Citrus Sinensis ID: 021121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV
Secondary Structure (PSIPRED)
cccEEccccEEEEEEccccccEEEEEEccccccccccEEEEEEcccccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEccccccEEEEEccccccccEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEEEcccccEEEEEEccccEEEEcccEEEEEEcccccEEEEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccEEEEEEccccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mpvfktpfngysvkfspfYESRLAVataqnfgilgngrvhvldlspaapalTELVAfdtadgvydlawseSHDSLLIAAVADgsvkiydtalpptanpirslhehtrevhsadynptrrdsfitsswddtvklwtvdrptsvrtfkEHAYCVYnatwnprhsdvfcsasgdctlRIWDVremgstmiipahEFEIlacdwnkyddcliasasvdksikiwdvrnyrvpiavlnghgyavrkvkfsphrrnllascsyDMTVCLWDFMVEDAlvgrydhhtefaVGVDMSVLVEGLLASTGWDELVYVWQqgmdprav
Flexible Loop (DISEMBL)
mpvfktpfngysVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTRevhsadynptrrdsfitsswddtvklwtvdrptsvrtfKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAsvdksikiwdVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV
Low Complexity Region (SEG)
MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV
Disordered region (IsUnstruct)
*****TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT************************DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ*******
Disordered Region (DISOPRED)
*PVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP***
Disordered Region (DISEMBL)
MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV
Disordered Region (DISPRO)
MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q9XF57	317	Peroxisome biogenesis pro	yes	no	0.996	0.996	0.841	1e-166
Q54WA3	316	Peroxisomal targeting sig	yes	no	0.974	0.977	0.5	3e-91
O00628	323	Peroxisomal targeting sig	yes	no	0.952	0.934	0.441	6e-72
P97865	318	Peroxisomal targeting sig	yes	no	0.933	0.930	0.435	1e-70
Q8R537	318	Peroxisomal targeting sig	yes	no	0.933	0.930	0.431	2e-70
P39108	375	Peroxisomal targeting sig	yes	no	0.943	0.797	0.316	3e-51
O59894	376	Peroxisomal targeting sig	yes	no	0.943	0.795	0.336	2e-50
P78798	308	Peroxisomal targeting sig	yes	no	0.955	0.983	0.314	2e-41
P90916	417	Probable histone-binding	yes	no	0.542	0.412	0.318	1e-21
Q61Y48	416	Probable histone-binding	N/A	no	0.542	0.413	0.307	4e-21

>sp|Q9XF57|PEX7_ARATH Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana GN=PEX7 PE=1 SV=2

 Score =  583 bits (1504), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 296/316 (93%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFK PFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL+L+P AP +TE V++DTA
Sbjct: 1   MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTA 60

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D VYD+ WSESHDS+LIAA+ DGSVKIYDTALPP +NPIRS  EH REV S DYNPTRRD
Sbjct: 61  DAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRD 120

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF+TSSWDDTVKLW +DRP SVRTFKEHAYCVY A WNP+H DVF SASGDCTLRIWDVR
Sbjct: 121 SFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMIIPAH+FEIL+CDWNKYDDC++A++SVDK++K+WDVR+YRVP+AVLNGHGYAVR
Sbjct: 181 EPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHRR+L+ASCSYDM+VCLWD+MVEDALVGRYDHHTEFAVG+DMSVLVEGL+ASTG
Sbjct: 241 KVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTG 300

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQQGMDPRA
Sbjct: 301 WDELVYVWQQGMDPRA 316

Import receptor for peroxisomal-targeting signal two (PTS2). A receptor-cargo complex composed of PEX5, PEX7, a PTS1-containing protein and a PTS2-containing protein is targeted to peroxisomes during import.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54WA3|PEX7_DICDI Peroxisomal targeting signal 2 receptor OS=Dictyostelium discoideum GN=pex7 PE=3 SV=1

 Score =  335 bits (859), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/312 (50%), Positives = 215/312 (68%), Gaps = 3/312 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           M  F + FNGYSV+FSPF E RLA  T+Q+FGI+GNGR ++LD+      +     FDT 
Sbjct: 1   MKRFHSHFNGYSVEFSPFEEQRLACVTSQHFGIIGNGRQYILDV--LDRDIGAFKTFDTR 58

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           DG+YD  WSE ++  + ++  DGS+KI+DT  P    PI+S  EHT+EV+S D+N   +D
Sbjct: 59  DGLYDCTWSEENECHVASSSGDGSIKIWDTQAPSGGRPIKSFEEHTKEVYSVDWNLVTKD 118

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           +FIT SWD ++K+W      S++TF+EH YC+Y+A W+PR++ +F S SGD TL+IWD R
Sbjct: 119 TFITGSWDQSIKIWNPRMDRSLKTFREHRYCIYSAIWSPRNAHLFASVSGDRTLKIWDSR 178

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           +  S   I AH+ EIL CDWNKY+D  + + SVDK+I+IWD+R    P  +L GH YAVR
Sbjct: 179 DNRSLNTIKAHDHEILTCDWNKYNDKEVVTGSVDKTIRIWDIRYPDRPTTILRGHTYAVR 238

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVE-DALVGRYDHHTEFAVGVDMSVLVEGLLAST 299
           ++K SPH  ++LASCSYDM+V +WD   E D ++ R DHHTEF VG+D ++ ++G +AS 
Sbjct: 239 RIKCSPHSESMLASCSYDMSVIVWDRAREQDPIIARMDHHTEFVVGLDWNMFIDGQMASC 298

Query: 300 GWDELVYVWQQG 311
            WDE V VW  G
Sbjct: 299 SWDEQVCVWNLG 310

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Dictyostelium discoideum (taxid: 44689)

>sp|O00628|PEX7_HUMAN Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7 PE=1 SV=1

 Score =  271 bits (692), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 136/308 (44%), Positives = 199/308 (64%), Gaps = 6/308 (1%)

Query: 3   VFKTPF-NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD 61
           + +TP  +GY+ +FSP+   RLA ATAQ++GI G G + +LD  P    L    +FD  D
Sbjct: 11  MLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILD--PDEAGLRLFRSFDWND 68

Query: 62  GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
           G++D+ WSE+++ +LI    DGS++++DTA    A P++   EH +EV+S D++ TR + 
Sbjct: 69  GLFDVTWSENNEHVLITCSGDGSLQLWDTA--KAAGPLQVYKEHAQEVYSVDWSQTRGEQ 126

Query: 122 FITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
            + S SWD TVKLW      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+
Sbjct: 127 LVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVK 186

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
             G  ++IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R
Sbjct: 187 AAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIR 246

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           +VKFSP   ++LASCSYD TV  W+F   D+L+   +HHTEF  G+D S+     +A   
Sbjct: 247 RVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCS 306

Query: 301 WDELVYVW 308
           WDE + ++
Sbjct: 307 WDETIKIY 314

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Homo sapiens (taxid: 9606)

>sp|P97865|PEX7_MOUSE Peroxisomal targeting signal 2 receptor OS=Mus musculus GN=Pex7 PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/301 (43%), Positives = 195/301 (64%), Gaps = 5/301 (1%)

Query: 9   NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
           +GY+ +FSP+   RLA A AQ++GI G G + VLD + +   L    +FD  DG++D+ W
Sbjct: 13  HGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLVLDQNESG--LQIFRSFDWNDGLFDVTW 70

Query: 69  SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
           SE+++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct: 71  SENNEHVLVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSW 128

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
           D TVK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct: 129 DQTVKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIV 188

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
           IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP 
Sbjct: 189 IPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF 248

Query: 248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
             ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + +
Sbjct: 249 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCSWDETIKI 308

Query: 308 W 308
           +
Sbjct: 309 Y 309

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Mus musculus (taxid: 10090)

>sp|Q8R537|PEX7_CRIGR Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus GN=PEX7 PE=1 SV=1

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/301 (43%), Positives = 195/301 (64%), Gaps = 5/301 (1%)

Query: 9   NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
           +GY+ +FSP+   RLA A AQ++GI G G + +LD + +   L    +FD +DG++D+ W
Sbjct: 13  HGYAAEFSPYLPGRLACAAAQHYGIAGCGTLIILDQNQSG--LQIFRSFDWSDGLFDVTW 70

Query: 69  SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
           SE ++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct: 71  SEDNEHVLVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSW 128

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
           D TVK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct: 129 DQTVKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTAGVRIV 188

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
           IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP 
Sbjct: 189 IPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF 248

Query: 248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
             ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + +
Sbjct: 249 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTEVADCSWDETIKI 308

Query: 308 W 308
           +
Sbjct: 309 Y 309

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Cricetulus griseus (taxid: 10029)

>sp|P39108|PEX7_YEAST Peroxisomal targeting signal 2 receptor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX7 PE=1 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 188/367 (51%), Gaps = 68/367 (18%)

Query: 8   FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLA 67
           F+GY V++SPF+++RLAVA   NFG++GNG++ +L++  +   + E+ +F T D ++DLA
Sbjct: 9   FSGYGVQYSPFFDNRLAVAAGSNFGLVGNGKLFILEIDRSG-RIVEVNSFLTQDCLFDLA 67

Query: 68  WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW 127
           W+ESH++ ++ A  DG+++++DT       PI    EH REV S ++N   R +F++SSW
Sbjct: 68  WNESHENQVLVAQGDGTLRLFDTTFKEF--PIAIFKEHEREVFSCNWNLVNRQNFLSSSW 125

Query: 128 DDTVKLWTVDRPTSVRTF-------------------KEHAY--------CVYNATWNPR 160
           D ++K+W+  R  S+ T                    K+ ++        CVY A ++P 
Sbjct: 126 DGSIKIWSPLRKQSLMTLTPRPLEITKMVDPLNAIILKKKSFTGISKNRNCVYQAQFSPH 185

Query: 161 HSDVFCSASGDCTLRIWDVR---EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
             ++  S SG+    ++D+R          +     E L CD+NKY   ++A+  VD +I
Sbjct: 186 DQNLVLSCSGNSYASLFDIRLPSGKNQNNFLVHSGLEALTCDFNKYRPYVVATGGVDNAI 245

Query: 218 KIWDVR-------------------NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD 258
           +IWD+R                   N      + N HG A+RKV +SPH  N+L S SYD
Sbjct: 246 RIWDIRMLNKNESATIKRTVPGQLHNSSCINEIPNAHGLAIRKVTWSPHHSNILMSASYD 305

Query: 259 MTVCLWDFMVEDAL---------------VGRYDHHTEFAVGVDMSVLVE-GLLASTGWD 302
           MT  +W  +  D                 +  +  H+EF  G D S+  + G +AST WD
Sbjct: 306 MTCRIWRDLSNDGAKETYKTNSTDATKGSIFNFTQHSEFVFGADWSLWGKPGYVASTAWD 365

Query: 303 ELVYVWQ 309
             ++VW 
Sbjct: 366 GNLFVWN 372

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import essential for import of 3-oxoacyl-CoA thiolase (a PTS2-containing protein) into peroxisomes. May direct thiolase to peroxisomes by shuttling between the cytosol and peroxisomal membranes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59894|PEX7_PICPA Peroxisomal targeting signal 2 receptor OS=Komagataella pastoris GN=PEX7 PE=3 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 199/366 (54%), Gaps = 67/366 (18%)

Query: 8   FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLA 67
           F+GY+V++SPFY++++AVAT+ N+G++GNGR++VL +      +T+ +++DT DG++ +A
Sbjct: 9   FSGYAVRYSPFYDNKIAVATSANYGLVGNGRLYVLSIMDDGNIITD-ISYDTQDGLFGVA 67

Query: 68  WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW 127
           WSE++++ ++ +  DG V ++DT L     P+    EH REV S D++   ++ F ++SW
Sbjct: 68  WSETNENHVLTSSGDGCVSLFDTTL--KDYPVMKFTEHQREVFSVDWSNIDKNLFCSASW 125

Query: 128 DDTVKLWT--VDRPTSVRTFKEHAY----------------------------------- 150
           D +VK+W+   +R TS+ T +  A                                    
Sbjct: 126 DGSVKVWSPGSNRNTSLLTLRSLASREEKTGRIEKPIPVVQPSQVPMSKTRPNIRNDNND 185

Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI--IPAHEFEILACDWNKYDDCLI 208
           CVY+A ++    ++  S + D  L++WD R      +  +  +  E L+CD+N+Y   ++
Sbjct: 186 CVYDAKFSFHDPNIIMSCNSDSHLQLWDTRLPNPLFMDFVAHNGLEALSCDFNRYRPFVV 245

Query: 209 ASASVDKSIKIWDVR------NYRVPIAV--LNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
           ASA VDK  K+WD R      + R P A+    GH +A+RK+ +SPH    L +CSYDMT
Sbjct: 246 ASAGVDKLAKVWDTRMIQPNVHSRPPRALNKFMGHEFAIRKLAWSPHGPTQLLTCSYDMT 305

Query: 261 VCLW-DFMVEDALVGRYDH---------------HTEFAVGVDMSVLVE-GLLASTGWDE 303
           V +W D     + VG  D                HTEF +G D S+  E G + +TGWDE
Sbjct: 306 VRVWNDSPSPTSRVGLLDGASQPHAPPCSKIFSAHTEFVMGCDWSLWGEPGWVVTTGWDE 365

Query: 304 LVYVWQ 309
           +VYVW 
Sbjct: 366 MVYVWN 371

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Pichia pastoris (taxid: 4922)

>sp|P78798|PEX7_SCHPO Peroxisomal targeting signal 2 receptor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex7 PE=2 SV=2

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 170/312 (54%), Gaps = 9/312 (2%)

Query: 1   MPVFKTP-FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT 59
           M   +TP F G SV+FSP  E+++AVA   ++G+ G+GR+++ D++P    + +   +D 
Sbjct: 1   MLSLRTPGFQGESVQFSPLVENKIAVAAVTHYGLGGSGRLYIHDVTPKGIQVCQ--HYDV 58

Query: 60  ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
            D ++ + WS++ ++ + A   DGS++++D  +P  + PI    EH  E+ + D N   R
Sbjct: 59  EDSLFGVRWSQNCENQVYACCGDGSLRLFDLTMP--SKPIHKWKEHKAEIVAIDTNTVDR 116

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC-VYNATWNPRHSDVFCSASGDCTLRIWD 178
              +T SWD T+KLW  + P SV+T    +   +     +    ++    S D   + WD
Sbjct: 117 RIVVTGSWDGTIKLWLGNLPNSVQTLNNGSNSRILTVATHYSSPNLLGYTSSDGLCKFWD 176

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
            R     M I     +I   +W+K +  ++ +A  +  +  +D+ N + P++VL+GH  A
Sbjct: 177 FRSSDKFMSIEIPN-QITCMNWSKSNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQLA 235

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLA 297
           VR +K S    +LLA+ SYDMT  ++D   + + + + D H+EF   VD S   +G  +A
Sbjct: 236 VRSIKSSNSAHDLLATASYDMTSRIFD-PEQHSCIRKVDLHSEFVRDVDWSDFGDGSWIA 294

Query: 298 STGWDELVYVWQ 309
           S GWDE +Y+W 
Sbjct: 295 SVGWDESLYIWN 306

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P90916|LIN53_CAEEL Probable histone-binding protein lin-53 OS=Caenorhabditis elegans GN=lin-53 PE=1 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-------TFKE 147
           T NP+  L  HT+E +   +NP +    +++S D TV  W ++   +V         FK 
Sbjct: 161 TFNPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKG 220

Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL 207
           H   V +  W+  H  VF S   D  L IWDVR       I AH  E+    +N Y + +
Sbjct: 221 HESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTSTPGHCIDAHSAEVNCLAFNPYSEFI 280

Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           +A+ S DK++ +WD+RN R+ +     H   + +V++SPH   +LAS   D  + +WD 
Sbjct: 281 LATGSADKTVALWDLRNLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDL 339

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA (By similarity). Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Y48|LIN53_CAEBR Probable histone-binding protein lin-53 OS=Caenorhabditis briggsae GN=lin-53 PE=3 SV=2

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-------RTFKE 147
           T NP+  L  HT+E +   +NP +    +++S D TV  W ++              FK 
Sbjct: 161 TFNPLLKLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINGNAGANGELKAREIFKG 220

Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL 207
           H   V +  W+  H  VF S   D  L IWD+R       I AH  E+    +N Y + +
Sbjct: 221 HESVVEDVAWHVLHDGVFGSVGDDKKLLIWDLRTNVPGHAIDAHSAEVNCLAFNPYSEFI 280

Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           +A+ S DK++ +WD+RN R+ +     H   + +V++SPH   +LAS   D  + +WD 
Sbjct: 281 LATGSADKTVALWDLRNLRLKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDL 339

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Essential protein. Required to repress the induction of vulval development by Ras signaling.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
82879859	317	peroxisomal import receptor PTS2 [Brassi	0.996	0.996	0.841	1e-164
15218882	317	peroxin 7 [Arabidopsis thaliana] gi|3174	0.996	0.996	0.841	1e-164
224079087	318	predicted protein [Populus trichocarpa]	0.996	0.993	0.858	1e-164
449433746	316	PREDICTED: peroxisome biogenesis protein	0.993	0.996	0.854	1e-164
356549206	318	PREDICTED: peroxisome biogenesis protein	0.993	0.990	0.858	1e-164
4689316	317	peroxisomal targeting signal type 2 rece	0.996	0.996	0.841	1e-163
297851344	317	hypothetical protein ARALYDRAFT_473130 [	0.996	0.996	0.838	1e-163
255587838	318	peroxisomal targeting signal 2 receptor,	0.996	0.993	0.848	1e-163
356555422	318	PREDICTED: LOW QUALITY PROTEIN: peroxiso	0.993	0.990	0.849	1e-162
225443794	316	PREDICTED: peroxisome biogenesis protein	0.993	0.996	0.835	1e-162

>gi|82879859|gb|ABB92566.1| peroxisomal import receptor PTS2 [Brassica napus]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 293/316 (92%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFK PFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL+LSP  P +TE +AFDTA
Sbjct: 1   MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELSPGGPGVTESIAFDTA 60

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D VYD+ WSESHDS+LIAA+ DGSVKIYDTALPP +NPIRS  EH REVHS DYNPTRRD
Sbjct: 61  DAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVHSVDYNPTRRD 120

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF+T+SWDDTVKLW +DRP S+RTFKEHAYCVY A WNP+H DVF SASGDCTLRIWDVR
Sbjct: 121 SFVTASWDDTVKLWAMDRPASIRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMIIPAH+ EIL+CDWNKYDDC++A+ SVDK+IK+WDVR+YR P+AVLNGHGYAVR
Sbjct: 181 EPGSTMIIPAHDLEILSCDWNKYDDCVLATCSVDKTIKVWDVRSYRAPLAVLNGHGYAVR 240

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHRRNL+ASCSYDM+VCLWD+MVEDALVGRYDHHTEFAVG+DMSVLVEGL+ASTG
Sbjct: 241 KVKFSPHRRNLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTG 300

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQQGMDPRA
Sbjct: 301 WDELVYVWQQGMDPRA 316

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218882|ref|NP_174220.1| peroxin 7 [Arabidopsis thaliana] gi|317412016|sp|Q9XF57.2|PEX7_ARATH RecName: Full=Peroxisome biogenesis protein 7; AltName: Full=Peroxin-7; Short=AtPEX7; AltName: Full=Peroxisomal targeting signal type 2 receptor; AltName: Full=Pex7p gi|9502414|gb|AAF88113.1|AC021043_6 peroxisomal targeting signal type 2 receptor, Pex7p [Arabidopsis thaliana] gi|89274147|gb|ABD65594.1| At1g29260 [Arabidopsis thaliana] gi|332192945|gb|AEE31066.1| peroxin 7 [Arabidopsis thaliana]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 296/316 (93%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFK PFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL+L+P AP +TE V++DTA
Sbjct: 1   MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTA 60

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D VYD+ WSESHDS+LIAA+ DGSVKIYDTALPP +NPIRS  EH REV S DYNPTRRD
Sbjct: 61  DAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRD 120

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF+TSSWDDTVKLW +DRP SVRTFKEHAYCVY A WNP+H DVF SASGDCTLRIWDVR
Sbjct: 121 SFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMIIPAH+FEIL+CDWNKYDDC++A++SVDK++K+WDVR+YRVP+AVLNGHGYAVR
Sbjct: 181 EPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHRR+L+ASCSYDM+VCLWD+MVEDALVGRYDHHTEFAVG+DMSVLVEGL+ASTG
Sbjct: 241 KVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTG 300

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQQGMDPRA
Sbjct: 301 WDELVYVWQQGMDPRA 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079087|ref|XP_002305744.1| predicted protein [Populus trichocarpa] gi|222848708|gb|EEE86255.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 272/317 (85%), Positives = 298/317 (94%), Gaps = 1/317 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LTELVAFDT 59
           MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL L PA  + LTEL++FDT
Sbjct: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRLHVLSLPPAPSSPLTELISFDT 60

Query: 60  ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           ADG+YDLAWSESHDSLLIAAVADGSVK+YDTALPPT NPIRSL EHTREVHS DYNPTRR
Sbjct: 61  ADGIYDLAWSESHDSLLIAAVADGSVKLYDTALPPTQNPIRSLQEHTREVHSVDYNPTRR 120

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           DSFIT+SWDDT+KLWT+DRP S+RTFKEHAYCVY+A WNPRH+DVF SASGDCT+RIWDV
Sbjct: 121 DSFITASWDDTIKLWTLDRPASIRTFKEHAYCVYSAAWNPRHTDVFASASGDCTVRIWDV 180

Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
           RE GSTMIIP H+FEIL CDWNKYDDC+IA+ASVDKSIK+WDVR++R PI+VLNGHGYAV
Sbjct: 181 REPGSTMIIPGHDFEILCCDWNKYDDCIIATASVDKSIKVWDVRSFRAPISVLNGHGYAV 240

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST 299
           RKVKFSPH RNL+ SCSYDM+VC+WDFMVEDALVGRYDHHTEFAVGVD+SVLV+GL+AST
Sbjct: 241 RKVKFSPHHRNLMVSCSYDMSVCMWDFMVEDALVGRYDHHTEFAVGVDISVLVDGLMAST 300

Query: 300 GWDELVYVWQQGMDPRA 316
           GWDELVYVWQ G DPRA
Sbjct: 301 GWDELVYVWQHGTDPRA 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433746|ref|XP_004134658.1| PREDICTED: peroxisome biogenesis protein 7-like [Cucumis sativus] gi|449479223|ref|XP_004155540.1| PREDICTED: peroxisome biogenesis protein 7-like [Cucumis sativus]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/316 (85%), Positives = 300/316 (94%), Gaps = 1/316 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFKTPFNGYSVKFSPFYESR+AVATAQNFGILGNGR+HVLDL+PA P ++E +AFDTA
Sbjct: 1   MPVFKTPFNGYSVKFSPFYESRIAVATAQNFGILGNGRLHVLDLNPAGP-ISEHIAFDTA 59

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           DGVYD++WSESHDSLL+AA+ADGSVK+YD ALPPT+NPIRS HEHTREVHSADYNP RRD
Sbjct: 60  DGVYDVSWSESHDSLLVAAIADGSVKLYDLALPPTSNPIRSFHEHTREVHSADYNPVRRD 119

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF+TSSWDDT KLWT+DRPTSVRTFKEHAYCVY++ WNPRH DVF SASGDCT+RIWDVR
Sbjct: 120 SFLTSSWDDTSKLWTLDRPTSVRTFKEHAYCVYSSVWNPRHGDVFASASGDCTVRIWDVR 179

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMIIPAH+FE+L+CDWNKYDDC IA+ASVDKSI++WDVR+YR P++VLNGHGYAVR
Sbjct: 180 EPGSTMIIPAHDFEVLSCDWNKYDDCCIATASVDKSIRVWDVRSYRTPVSVLNGHGYAVR 239

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHR+ LLASCSYDMTVCLWD+M+EDALVGRYDHHTEFAVG+DMSVLVEGLLASTG
Sbjct: 240 KVKFSPHRQGLLASCSYDMTVCLWDYMLEDALVGRYDHHTEFAVGIDMSVLVEGLLASTG 299

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQ G DPRA
Sbjct: 300 WDELVYVWQHGTDPRA 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549206|ref|XP_003542988.1| PREDICTED: peroxisome biogenesis protein 7-like [Glycine max]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/318 (85%), Positives = 301/318 (94%), Gaps = 3/318 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL--TELVAFD 58
           MP+FKTPFNGYSVKFSPFYE+RLAVATAQNFGILGNGR+HVLDLSP  P+L  +ELVA+D
Sbjct: 1   MPIFKTPFNGYSVKFSPFYENRLAVATAQNFGILGNGRLHVLDLSPE-PSLPISELVAYD 59

Query: 59  TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
           TADG+YD+AWSESHDS++IAAVADGSVK+YD ALPPT+NPIRS  EHTREVHSADYNP R
Sbjct: 60  TADGIYDVAWSESHDSIVIAAVADGSVKLYDLALPPTSNPIRSFQEHTREVHSADYNPVR 119

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
           RDSF++SSWDDTVKLWT+DRPTSVRTFKEHAYCVY+A WNPRH+DVF SASGDCTLR+WD
Sbjct: 120 RDSFLSSSWDDTVKLWTLDRPTSVRTFKEHAYCVYSAVWNPRHADVFASASGDCTLRVWD 179

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
           VRE GSTMI+PAHEFEILACDWNKYD+C+IA+ASVDKS+K+WDVRNYRVP+ VLNGHGYA
Sbjct: 180 VREPGSTMILPAHEFEILACDWNKYDECVIATASVDKSVKVWDVRNYRVPLCVLNGHGYA 239

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298
           VRKVKFSPH RNL+ SCSYDMTVC+WDFMVEDALV RYDHHTEFAVGVDMSVLVEGL+AS
Sbjct: 240 VRKVKFSPHVRNLMVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLMAS 299

Query: 299 TGWDELVYVWQQGMDPRA 316
           TGWDELVYVWQ G DPRA
Sbjct: 300 TGWDELVYVWQHGTDPRA 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4689316|gb|AAD27848.1|AF130973_1 peroxisomal targeting signal type 2 receptor [Arabidopsis thaliana]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 295/316 (93%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFK PFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL+L+P AP +TE V++DTA
Sbjct: 1   MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTA 60

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D VYD+ WSESHDS+LIAA  DGSVKIYDTALPP +NPIRS  EH REV S DYNPTRRD
Sbjct: 61  DAVYDVCWSESHDSVLIAANGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRD 120

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF+TSSWDDTVKLW +DRP SVRTFKEHAYCVY A WNP+H DVF SASGDCTLRIWDVR
Sbjct: 121 SFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMIIPAH+FEIL+CDWNKYDDC++A++SVDK++K+WDVR+YRVP+AVLNGHGYAVR
Sbjct: 181 EPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHRR+L+ASCSYDM+VCLWD+MVEDALVGRYDHHTEFAVG+DMSVLVEGL+ASTG
Sbjct: 241 KVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTG 300

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQQGMDPRA
Sbjct: 301 WDELVYVWQQGMDPRA 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851344|ref|XP_002893553.1| hypothetical protein ARALYDRAFT_473130 [Arabidopsis lyrata subsp. lyrata] gi|297339395|gb|EFH69812.1| hypothetical protein ARALYDRAFT_473130 [Arabidopsis lyrata subsp. lyrata]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 265/316 (83%), Positives = 294/316 (93%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFK PFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL+L+P AP +TE VA+DTA
Sbjct: 1   MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVAYDTA 60

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D VYD+ WSESHDS+LIAA+ DGSVKIYDTALPP +NPIRS  EH REV S DYNPTRRD
Sbjct: 61  DAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSLDYNPTRRD 120

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF+TSSWDDTVKLW +DRP SVRTFKEH YCVY A WNP+H DVF SASGDCT+RIWDVR
Sbjct: 121 SFLTSSWDDTVKLWAMDRPASVRTFKEHVYCVYQAVWNPKHGDVFASASGDCTVRIWDVR 180

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMIIP HE+EIL+CDWNKYDDC++A++SVDK++K+WDVR+YRVP+AVLNGHGYAVR
Sbjct: 181 EPGSTMIIPGHEYEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHRR+L+ASCSYDMTVCLWD+MVEDALVGRYDHHTEFAVG+DMSVLVEGL+ASTG
Sbjct: 241 KVKFSPHRRSLIASCSYDMTVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTG 300

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQQGMDPRA
Sbjct: 301 WDELVYVWQQGMDPRA 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587838|ref|XP_002534414.1| peroxisomal targeting signal 2 receptor, putative [Ricinus communis] gi|223525344|gb|EEF27971.1| peroxisomal targeting signal 2 receptor, putative [Ricinus communis]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/317 (84%), Positives = 296/317 (93%), Gaps = 1/317 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDT 59
           MPVFKTPFNGYSVKFSPF+E+RLAVAT+QNFGILGNGRVHVL L P     LTEL++FDT
Sbjct: 1   MPVFKTPFNGYSVKFSPFHETRLAVATSQNFGILGNGRVHVLSLPPTPSLPLTELISFDT 60

Query: 60  ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           ADGVYD+AWSESHDSLL+AAVADGSVK+YD ALPPT NP+RSL EHTREVHS DYNPTRR
Sbjct: 61  ADGVYDIAWSESHDSLLVAAVADGSVKLYDIALPPTQNPLRSLQEHTREVHSVDYNPTRR 120

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           DSFITSSWDDTVKLWT+DRP S+RTFKEHAYCVY+ATWNPRH+DVF SASGDCT+RIWDV
Sbjct: 121 DSFITSSWDDTVKLWTLDRPASIRTFKEHAYCVYSATWNPRHTDVFASASGDCTVRIWDV 180

Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
           RE GSTM+IP H+FEIL+CDWNKYDDC+IA+ASVDKSIK+WDVR+YR P++VLNGHGYAV
Sbjct: 181 REPGSTMMIPGHDFEILSCDWNKYDDCIIAAASVDKSIKVWDVRSYRQPMSVLNGHGYAV 240

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST 299
           RKVKFSPH RNL+ SCSYDMTVC+WDFM+EDALVGRYDHHTEFAVGVDMSVLVEGL+ ST
Sbjct: 241 RKVKFSPHHRNLMVSCSYDMTVCMWDFMIEDALVGRYDHHTEFAVGVDMSVLVEGLIGST 300

Query: 300 GWDELVYVWQQGMDPRA 316
           GWDELVYVWQ G DPRA
Sbjct: 301 GWDELVYVWQHGTDPRA 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555422|ref|XP_003546031.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis protein 7-like [Glycine max]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/318 (84%), Positives = 299/318 (94%), Gaps = 3/318 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLS--PAAPALTELVAFD 58
           MPVFKTPFNGYSVKFSPFYE+RLAVATAQNFGILGNGR+HVLDLS  P+ P + EL A+D
Sbjct: 1   MPVFKTPFNGYSVKFSPFYENRLAVATAQNFGILGNGRLHVLDLSADPSLP-IGELAAYD 59

Query: 59  TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
           TADG+YD++WSESHDS++IAAVADGSVK+YD ALPPT+NPIRS  EHTREVHSADYNP R
Sbjct: 60  TADGIYDVSWSESHDSIVIAAVADGSVKLYDLALPPTSNPIRSFQEHTREVHSADYNPVR 119

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
           RDSF++SSWDDTVKLWT+DRPTSVRTFKEHAYCVY+A WNPRH+DVF SASGDCTLR+WD
Sbjct: 120 RDSFLSSSWDDTVKLWTLDRPTSVRTFKEHAYCVYSAVWNPRHADVFASASGDCTLRVWD 179

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
           VRE GSTMI+P HEFEILACDWNKYD+C+IA+ASVDKS+K+WDVRNYRVP++VLNGHGYA
Sbjct: 180 VREPGSTMILPGHEFEILACDWNKYDECVIATASVDKSVKVWDVRNYRVPLSVLNGHGYA 239

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298
           VRKVKFSPH RNL+ SCSYDMTVC+WDFMVEDALV RYDHHTEFAVGVDMSVLVEGL+AS
Sbjct: 240 VRKVKFSPHVRNLMVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLMAS 299

Query: 299 TGWDELVYVWQQGMDPRA 316
           TGWDELVYVWQ G DPRA
Sbjct: 300 TGWDELVYVWQHGTDPRA 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443794|ref|XP_002272882.1| PREDICTED: peroxisome biogenesis protein 7 [Vitis vinifera]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 264/316 (83%), Positives = 297/316 (93%), Gaps = 1/316 (0%)

Query: 1   MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
           MPVFKTPFNGY+VKFSPFYESRLAVATAQNFGILGNGR+HVL+LSPA P ++E  +FDTA
Sbjct: 1   MPVFKTPFNGYAVKFSPFYESRLAVATAQNFGILGNGRLHVLELSPAGP-ISEFASFDTA 59

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           DGVYD+ WSESH+SLLIAAVADGSVK+YD ALPP +NP+RSL EH+REVHS D+NP RRD
Sbjct: 60  DGVYDVTWSESHESLLIAAVADGSVKLYDLALPPASNPVRSLQEHSREVHSLDFNPVRRD 119

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           SF++SSWDDT+KLWT+DRPTSVRTFKEHAYCVY++ WNPRH+DVF SASGDCT+R+WDVR
Sbjct: 120 SFLSSSWDDTIKLWTLDRPTSVRTFKEHAYCVYSSVWNPRHADVFASASGDCTIRVWDVR 179

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           E GSTMI+PAHEFEILACDWNKYDDC++ SASVDKSIK+WDVRN+R+P++VLNGH YAVR
Sbjct: 180 EPGSTMILPAHEFEILACDWNKYDDCVLVSASVDKSIKVWDVRNFRIPVSVLNGHSYAVR 239

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
           KVKFSPHRR  +ASCSYDMTVCLWD+MVEDAL+GRYDHHTEFAVGVDMSVLVEGLLASTG
Sbjct: 240 KVKFSPHRRGAIASCSYDMTVCLWDYMVEDALIGRYDHHTEFAVGVDMSVLVEGLLASTG 299

Query: 301 WDELVYVWQQGMDPRA 316
           WDELVYVWQ G DPRA
Sbjct: 300 WDELVYVWQHGTDPRA 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2029939	317	PEX7 "AT1G29260" [Arabidopsis	0.996	0.996	0.841	2.7e-155
DICTYBASE|DDB_G0279801	316	pex7 "peroxisomal biogenesis f	0.974	0.977	0.5	2.3e-87
UNIPROTKB|E1BYP4	321	PEX7 "Uncharacterized protein"	0.933	0.922	0.461	1.8e-71
UNIPROTKB|O00628	323	PEX7 "Peroxisomal targeting si	0.952	0.934	0.441	4.3e-70
RGD|1308483	318	Pex7 "peroxisomal biogenesis f	0.933	0.930	0.441	3.8e-69
UNIPROTKB|E2QYX6	323	PEX7 "Uncharacterized protein"	0.933	0.916	0.431	4.9e-69
MGI|MGI:1321392	318	Pex7 "peroxisomal biogenesis f	0.933	0.930	0.435	8e-69
UNIPROTKB|Q8R537	318	PEX7 "Peroxisomal targeting si	0.933	0.930	0.431	8e-69
UNIPROTKB|Q08DL6	323	PEX7 "Peroxisomal biogenesis f	0.933	0.916	0.421	2.7e-68
ASPGD|ASPL0000053437	355	pexG [Emericella nidulans (tax	0.577	0.515	0.412	1.5e-66

TAIR|locus:2029939 PEX7 "AT1G29260" [Arabidopsis thaliana (taxid:3702)]

 Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
 Identities = 266/316 (84%), Positives = 296/316 (93%)

Query:     1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
             MPVFK PFNGYSVKFSPFYESRLAVATAQNFGILGNGR+HVL+L+P AP +TE V++DTA
Sbjct:     1 MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTA 60

Query:    61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             D VYD+ WSESHDS+LIAA+ DGSVKIYDTALPP +NPIRS  EH REV S DYNPTRRD
Sbjct:    61 DAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRD 120

Query:   121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             SF+TSSWDDTVKLW +DRP SVRTFKEHAYCVY A WNP+H DVF SASGDCTLRIWDVR
Sbjct:   121 SFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180

Query:   181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
             E GSTMIIPAH+FEIL+CDWNKYDDC++A++SVDK++K+WDVR+YRVP+AVLNGHGYAVR
Sbjct:   181 EPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240

Query:   241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
             KVKFSPHRR+L+ASCSYDM+VCLWD+MVEDALVGRYDHHTEFAVG+DMSVLVEGL+ASTG
Sbjct:   241 KVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTG 300

Query:   301 WDELVYVWQQGMDPRA 316
             WDELVYVWQQGMDPRA
Sbjct:   301 WDELVYVWQQGMDPRA 316

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0006625 "protein targeting to peroxisome" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

DICTYBASE|DDB_G0279801 pex7 "peroxisomal biogenesis factor 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 156/312 (50%), Positives = 215/312 (68%)

Query:     1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA 60
             M  F + FNGYSV+FSPF E RLA  T+Q+FGI+GNGR ++LD+      +     FDT 
Sbjct:     1 MKRFHSHFNGYSVEFSPFEEQRLACVTSQHFGIIGNGRQYILDVLDRD--IGAFKTFDTR 58

Query:    61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             DG+YD  WSE ++  + ++  DGS+KI+DT  P    PI+S  EHT+EV+S D+N   +D
Sbjct:    59 DGLYDCTWSEENECHVASSSGDGSIKIWDTQAPSGGRPIKSFEEHTKEVYSVDWNLVTKD 118

Query:   121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             +FIT SWD ++K+W      S++TF+EH YC+Y+A W+PR++ +F S SGD TL+IWD R
Sbjct:   119 TFITGSWDQSIKIWNPRMDRSLKTFREHRYCIYSAIWSPRNAHLFASVSGDRTLKIWDSR 178

Query:   181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
             +  S   I AH+ EIL CDWNKY+D  + + SVDK+I+IWD+R    P  +L GH YAVR
Sbjct:   179 DNRSLNTIKAHDHEILTCDWNKYNDKEVVTGSVDKTIRIWDIRYPDRPTTILRGHTYAVR 238

Query:   241 KVKFSPHRRNLLASCSYDMTVCLWDFMVE-DALVGRYDHHTEFAVGVDMSVLVEGLLAST 299
             ++K SPH  ++LASCSYDM+V +WD   E D ++ R DHHTEF VG+D ++ ++G +AS 
Sbjct:   239 RIKCSPHSESMLASCSYDMSVIVWDRAREQDPIIARMDHHTEFVVGLDWNMFIDGQMASC 298

Query:   300 GWDELVYVWQQG 311
              WDE V VW  G
Sbjct:   299 SWDEQVCVWNLG 310

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA;ISS

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA;ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BYP4 PEX7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 139/301 (46%), Positives = 196/301 (65%)

Query:     9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
             +GY+ +FSP++  R+A A AQ +GI G G + VL+ +     L  L +FD  DG++D+ W
Sbjct:    16 HGYAAEFSPYWPGRVACAAAQYYGIAGCGTLAVLEQNETGIVL--LRSFDWNDGLFDVTW 73

Query:    69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
             SE+++ +LI +  DGS++I+D A P    P++   EHT+E +S D++ TR +  + S SW
Sbjct:    74 SENNEHVLITSSGDGSLQIWDIAKPK--GPLQVYKEHTQEAYSVDWSQTRGEQLVVSGSW 131

Query:   128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             D T KLW      S+RTFK H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct:   132 DQTAKLWDPAVGKSLRTFKGHEGVIYSTIWSPHIPGCFASASGDQTLRIWDVKAPGVRLV 191

Query:   188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
             IPAH+ EIL+CDW KYD+ L+ + +VD S+K WD+RN R P+ +L GH YAVR+VKFSP 
Sbjct:   192 IPAHQAEILSCDWCKYDENLLVTGAVDCSLKGWDLRNVRQPVFILLGHTYAVRRVKFSPF 251

Query:   248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
                LLASCSYD TV  WDF   + L+   +HHTEF  G+D+S+   G +    WDELV +
Sbjct:   252 HATLLASCSYDFTVRFWDFSKPNPLLETVEHHTEFTCGLDLSLHKCGQVVDCAWDELVKI 311

Query:   308 W 308
             +
Sbjct:   312 Y 312

GO:0001764 "neuron migration" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|O00628 PEX7 "Peroxisomal targeting signal 2 receptor" [Homo sapiens (taxid:9606)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 136/308 (44%), Positives = 199/308 (64%)

Query:     3 VFKTPF-NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD 61
             + +TP  +GY+ +FSP+   RLA ATAQ++GI G G + +LD  P    L    +FD  D
Sbjct:    11 MLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILD--PDEAGLRLFRSFDWND 68

Query:    62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
             G++D+ WSE+++ +LI    DGS++++DTA    A P++   EH +EV+S D++ TR + 
Sbjct:    69 GLFDVTWSENNEHVLITCSGDGSLQLWDTA--KAAGPLQVYKEHAQEVYSVDWSQTRGEQ 126

Query:   122 FITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
              + S SWD TVKLW      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+
Sbjct:   127 LVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVK 186

Query:   181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
               G  ++IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R
Sbjct:   187 AAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIR 246

Query:   241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
             +VKFSP   ++LASCSYD TV  W+F   D+L+   +HHTEF  G+D S+     +A   
Sbjct:   247 RVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCS 306

Query:   301 WDELVYVW 308
             WDE + ++
Sbjct:   307 WDETIKIY 314

GO:0001764 "neuron migration" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IMP

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IDA

GO:0016558 "protein import into peroxisome matrix" evidence=IDA;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

RGD|1308483 Pex7 "peroxisomal biogenesis factor 7" [Rattus norvegicus (taxid:10116)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 133/301 (44%), Positives = 196/301 (65%)

Query:     9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
             +GY+V+FSP+   RLA A AQ++GI G G + VLD + +   L    +FD  DG++D+ W
Sbjct:    13 HGYAVEFSPYLPGRLACAAAQHYGIAGCGTLLVLDQNESG--LQIFRSFDWNDGLFDVTW 70

Query:    69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
             SE+++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct:    71 SENNEHVLVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRDEQLVVSGSW 128

Query:   128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             D TVK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct:   129 DQTVKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIV 188

Query:   188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
             IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP 
Sbjct:   189 IPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF 248

Query:   248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
               ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE V +
Sbjct:   249 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTEVADCSWDETVKI 308

Query:   308 W 308
             +
Sbjct:   309 Y 309

GO:0001764 "neuron migration" evidence=IEA;ISO

GO:0001958 "endochondral ossification" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005777 "peroxisome" evidence=ISO

GO:0005782 "peroxisomal matrix" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006625 "protein targeting to peroxisome" evidence=ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISO

GO:0016558 "protein import into peroxisome matrix" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

UNIPROTKB|E2QYX6 PEX7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 130/301 (43%), Positives = 195/301 (64%)

Query:     9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
             +GY+ +FSP+   RLA A AQ++GI G G + +LD + +   L    +FD  DG++D+ W
Sbjct:    18 HGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLILDQNESGLRLFR--SFDWNDGLFDVTW 75

Query:    69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
             SE+++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct:    76 SENNEHILVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSW 133

Query:   128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             D TVKLW      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct:   134 DQTVKLWDPTVGKSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKSTGVRIV 193

Query:   188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
             +PAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP 
Sbjct:   194 VPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF 253

Query:   248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
               ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + +
Sbjct:   254 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCAWDETIKI 313

Query:   308 W 308
             +
Sbjct:   314 Y 314

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

MGI|MGI:1321392 Pex7 "peroxisomal biogenesis factor 7" [Mus musculus (taxid:10090)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 131/301 (43%), Positives = 195/301 (64%)

Query:     9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
             +GY+ +FSP+   RLA A AQ++GI G G + VLD + +   L    +FD  DG++D+ W
Sbjct:    13 HGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLVLDQNESG--LQIFRSFDWNDGLFDVTW 70

Query:    69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
             SE+++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct:    71 SENNEHVLVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSW 128

Query:   128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             D TVK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct:   129 DQTVKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIV 188

Query:   188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
             IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP 
Sbjct:   189 IPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF 248

Query:   248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
               ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + +
Sbjct:   249 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCSWDETIKI 308

Query:   308 W 308
             +
Sbjct:   309 Y 309

GO:0001764 "neuron migration" evidence=IMP

GO:0001958 "endochondral ossification" evidence=IMP

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO

GO:0005782 "peroxisomal matrix" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006625 "protein targeting to peroxisome" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008611 "ether lipid biosynthetic process" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=ISO;IMP

GO:0019899 "enzyme binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

UNIPROTKB|Q8R537 PEX7 "Peroxisomal targeting signal 2 receptor" [Cricetulus griseus (taxid:10029)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 130/301 (43%), Positives = 195/301 (64%)

Query:     9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
             +GY+ +FSP+   RLA A AQ++GI G G + +LD + +   L    +FD +DG++D+ W
Sbjct:    13 HGYAAEFSPYLPGRLACAAAQHYGIAGCGTLIILDQNQSG--LQIFRSFDWSDGLFDVTW 70

Query:    69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
             SE ++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct:    71 SEDNEHVLVTCSGDGSLQLWDTA--KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSW 128

Query:   128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             D TVK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++
Sbjct:   129 DQTVKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTAGVRIV 188

Query:   188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
             IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP 
Sbjct:   189 IPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF 248

Query:   248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
               ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + +
Sbjct:   249 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTEVADCSWDETIKI 308

Query:   308 W 308
             +
Sbjct:   309 Y 309

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=ISS

GO:0008611 "ether lipid biosynthetic process" evidence=ISS

GO:0016558 "protein import into peroxisome matrix" evidence=ISS

UNIPROTKB|Q08DL6 PEX7 "Peroxisomal biogenesis factor 7" [Bos taurus (taxid:9913)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 127/301 (42%), Positives = 196/301 (65%)

Query:     9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
             +GY+ +FSP+   RLA A +Q++GI G+G + +LD + +   L    +FD  DG++D+ W
Sbjct:    18 HGYAAEFSPYLPGRLACAASQHYGIAGSGTLLILDQNESGLRLFR--SFDWNDGLFDVTW 75

Query:    69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SW 127
             SE+++ +L+    DGS++++DTA      P++   EHT+EV+S D++ TR +  + S SW
Sbjct:    76 SENNEHVLVTCSGDGSLQLWDTAR--ATGPLQVFKEHTQEVYSVDWSQTRGEQLVVSGSW 133

Query:   128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             D TVKLW      S+ TF+ H   +Y+  W+P     F S+SGD TLRIWDV+  G  ++
Sbjct:   134 DQTVKLWDPTVGKSLCTFRGHESVIYSTIWSPHIPGCFASSSGDQTLRIWDVKTTGVRIV 193

Query:   188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
             +PAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN + P+  L GH YA+R+VKFSP 
Sbjct:   194 VPAHQAEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVQQPVFELLGHTYAIRRVKFSPF 253

Query:   248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
               ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + +
Sbjct:   254 HASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCAWDETIKI 313

Query:   308 W 308
             +
Sbjct:   314 Y 314

GO:0008611 "ether lipid biosynthetic process" evidence=ISS

GO:0016558 "protein import into peroxisome matrix" evidence=ISS

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

ASPGD|ASPL0000053437 pexG [Emericella nidulans (taxid:162425)]

 Score = 412 (150.1 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
 Identities = 80/194 (41%), Positives = 127/194 (65%)

Query:     4 FKTP-FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG 62
             F+T  + GY+VK+SPF+++RLAVA++ NFG++GNGR+++L+L+P    +     F T D 
Sbjct:     4 FRTEGYQGYAVKYSPFFDNRLAVASSANFGLVGNGRLYILELTPNG--IVPAKWFTTQDA 61

Query:    63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
             +YDLAWSE+++  ++ A  DGS+K++D+ L     PI++  EH REV S  +N   +D+F
Sbjct:    62 LYDLAWSEANEHQVLTATGDGSIKLFDSTLNDF--PIQNWKEHNREVFSVSWNLVAKDTF 119

Query:   123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
              +SSWD TV++W+  RP S+ T   H+ C Y+A+++P   D+    S D  LR++D+R  
Sbjct:   120 CSSSWDGTVRIWSPQRPHSLVTLPTHS-CTYSASFSPHSPDILSCVSSDSYLRVYDLRTP 178

Query:   183 GS-----TMIIPAH 191
              S     T+ IP H
Sbjct:   179 ASASNHLTLQIPIH 192

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0006625 "protein targeting to peroxisome" evidence=IMP

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00628	PEX7_HUMAN	No assigned EC number	0.4415	0.9526	0.9349	yes	no
Q8R537	PEX7_CRIGR	No assigned EC number	0.4318	0.9337	0.9308	yes	no
P97865	PEX7_MOUSE	No assigned EC number	0.4352	0.9337	0.9308	yes	no
P78798	PEX7_SCHPO	No assigned EC number	0.3141	0.9558	0.9837	yes	no
Q9XF57	PEX7_ARATH	No assigned EC number	0.8417	0.9968	0.9968	yes	no
Q54WA3	PEX7_DICDI	No assigned EC number	0.5	0.9747	0.9778	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-39
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-11
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-09
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-08
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	7e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  140 bits (355), Expect = 1e-39
 Identities = 72/249 (28%), Positives = 109/249 (43%), Gaps = 11/249 (4%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
            GV  +A+S     LL     DG++K++D     T   +R+L  HT  V     +     
Sbjct: 10  GGVTCVAFSPDGK-LLATGSGDGTIKVWDLE---TGELLRTLKGHTGPVRDVAASA-DGT 64

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
              + S D T++LW ++    VRT   H   V +  ++P    +  S+S D T+++WDV 
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVE 123

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
                  +  H   + +  ++      +AS+S D +IK+WD+R  +  +A L GH   V 
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVN 181

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
            V FSP     L S S D T+ LWD       +G    H      V  S     LLAS  
Sbjct: 182 SVAFSP-DGEKLLSSSSDGTIKLWDLS-TGKCLGTLRGHENGVNSVAFSP-DGYLLASGS 238

Query: 301 WDELVYVWQ 309
            D  + VW 
Sbjct: 239 EDGTIRVWD 247

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  138 bits (349), Expect = 9e-39
 Identities = 82/300 (27%), Positives = 132/300 (44%), Gaps = 24/300 (8%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
             V FSP     LA  +       G+G + V DL       T          V D+A S 
Sbjct: 13  TCVAFSP-DGKLLATGS-------GDGTIKVWDLETGELLRTLKGH---TGPVRDVAAS- 60

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD- 129
           +  + L +  +D +++++D     T   +R+L  HT  V S  ++P  R   ++SS  D 
Sbjct: 61  ADGTYLASGSSDKTIRLWDL---ETGECVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDK 115

Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
           T+K+W V+    + T + H   V +  ++P       S+S D T+++WD+R       + 
Sbjct: 116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLT 174

Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
            H  E+ +  ++  D   + S+S D +IK+WD+   +  +  L GH   V  V FSP   
Sbjct: 175 GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY 232

Query: 250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
            LLAS S D T+ +WD    +  V     HT     +  S      LAS   D  + +W 
Sbjct: 233 -LLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWS-PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  116 bits (290), Expect = 2e-29
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 14/277 (5%)

Query: 35  GNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP 94
            +G V + DLS     +  L     +  V  LA+S     L   +  DG++K++D     
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSES--VTSLAFSPDGKLLASGSSLDGTIKLWDLR--- 186

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-TFKEHAYCVY 153
           T  P+ +L  HT  V S  ++P       + S D T++LW +     +R T   H+  V 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASAS 212
           ++ ++P  S +  S S D T+R+WD+R   S    +  H   +L+  ++  D  L+AS S
Sbjct: 247 SS-FSPDGSLLA-SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS 303

Query: 213 VDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA 271
            D ++++WD+   ++     L GH   V  + FSP    L++  S D T+ LWD      
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           L     H    +V       V   ++S   D  V +W
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRV---VSSGSTDGTVRLW 397

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  115 bits (289), Expect = 3e-29
 Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 18/303 (5%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
            S+ FSP  E  L+ ++        +G + + DL      +  L        V  LA S 
Sbjct: 69  TSIAFSPDGELLLSGSS--------DGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSS 119

Query: 71  SHDSLLIAAV--ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD 128
              + ++ A    DG+VK++D + P     IR+L  H+  V S  ++P  +     SS D
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTP--GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMI 187
            T+KLW +     + T   H   V +  ++P    +  S S D T+R+WD+         
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
           +  H   +++  ++  D  L+AS S D +I++WD+R+    +  L+GH  +V  V FSP 
Sbjct: 238 LSGHSDSVVSS-FSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 248 RRNLLASCSYDMTVCLWDF-MVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY 306
              LLAS S D TV LWD    +         H      +  S     L++    D  + 
Sbjct: 296 -GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 307 VWQ 309
           +W 
Sbjct: 355 LWD 357

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 96.2 bits (240), Expect = 5e-23
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW 200
             RT K H   V    ++P    +  + SGD T+++WD+        +  H   +     
Sbjct: 1   LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 201 NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
           +  D   +AS S DK+I++WD+      +  L GH   V  V FSP  R +L+S S D T
Sbjct: 60  SA-DGTYLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKT 116

Query: 261 VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           + +WD       +     HT++   V  S      +AS+  D  + +W
Sbjct: 117 IKVWDV-ETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.2 bits (230), Expect = 3e-21
 Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 20/257 (7%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
            S+ FSP  +  L +A+        +G + + DLS      + L     +      ++S 
Sbjct: 202 SSLAFSP--DGGLLIASG-----SSDGTIRLWDLSTGKLLRSTLSGHSDSV---VSSFS- 250

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT 130
              SLL +  +DG+++++D  L  +++ +R+L  H+  V S  ++P       + S D T
Sbjct: 251 PDGSLLASGSSDGTIRLWD--LRSSSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGT 307

Query: 131 VKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
           V+LW ++  +  S  T K H   V + +++P  S +    S D T+R+WD+R       +
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Query: 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR 248
             H   +L+  ++  D  +++S S D ++++WD+    + +  L+GH   V  + FSP  
Sbjct: 368 EGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL-LRNLDGHTSRVTSLDFSP-D 423

Query: 249 RNLLASCSYDMTVCLWD 265
              LAS S D T+ LWD
Sbjct: 424 GKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.1 bits (188), Expect = 1e-15
 Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 36  NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT 95
           +G + + DL  ++  L  L        V  +A+S     LL +  +DG+V+++D      
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFS-PDGKLLASGSSDGTVRLWDLETGKL 318

Query: 96  ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNA 155
                +L  H   V S  ++P         S D T++LW +     ++T + H+  V + 
Sbjct: 319 -LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSV 376

Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           +++P    V  S S D T+R+WD+        +  H   + + D++  D   +AS S D 
Sbjct: 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS-PDGKSLASGSSDN 434

Query: 216 SIKIWDVRNYRVPIAV 231
           +I++WD++     ++ 
Sbjct: 435 TIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPP------TANPIRSLHEHTREVHSADYNP 116
           + D+A++      L  A  DG+  I    +P        ++PI  L  HT++V    ++P
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGT--IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHP 135

Query: 117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
           +  +   ++  D  V +W V+R  +V   K H+  + +  WN   S + C+ S D  L I
Sbjct: 136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNI 194

Query: 177 WDVREMGSTMIIPAHE-FEILACDWNKYDDCLIA---SASVDKSIKIWDVRNYRVPIAV 231
            D R+      + AH   +   C W K  D +I    S S  + I +WD R    P + 
Sbjct: 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 9/203 (4%)

Query: 114 YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173
           +N   +    +S+++  V++W V R   V   KEH   V++  ++     +  S S D +
Sbjct: 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599

Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
           +++W + +  S   I   +  I    +       +A  S D  +  +D+RN ++P+  + 
Sbjct: 600 VKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM-----VEDALVGRYDHHTEFAVGVDM 288
           GH   V  V+F     + L S S D T+ LWD       + +  +  +  HT     V +
Sbjct: 659 GHSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716

Query: 289 SVLVEGLLASTGWDELVYVWQQG 311
           SV  +G +A+      V+V+ + 
Sbjct: 717 SV-SDGYIATGSETNEVFVYHKA 738

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM--------IIP 189
           R   V   K H   + +  +NP  S++  S S D T+R+W++     ++        I+ 
Sbjct: 63  RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122

Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
            H+ +I   DWN  +  ++ S+  D  + IWD+ N
Sbjct: 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV------RNYRVPIAVLNGHGYAVR 240
           I+   E  I+   +N +D   + +AS D +I  W +      +N   PI  L GH   V 
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-YDHHTEFAVGVDMSVLVEGLLAST 299
            V F P   N+LAS   DM V +WD  VE          H++    ++ + L   LL +T
Sbjct: 130 IVSFHPSAMNVLASAGADMVVNVWD--VERGKAVEVIKCHSDQITSLEWN-LDGSLLCTT 186

Query: 300 GWDELVYVWQQGMDPR 315
             D+ + +    +DPR
Sbjct: 187 SKDKKLNI----IDPR 198

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            +  L GH   V  V FSP     LAS S D T+ LWD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              +  L GH   V  V FSP   NLLAS S D TV +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 14/136 (10%)

Query: 98  PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNA- 155
           P+  L  HT  +    +NP   +   + S D T+++W +     SV+  K+   C+    
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILKGH 124

Query: 156 -------TWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYDDCL 207
                   WNP +  + CS+  D  + IWD+  E  +  I    +   L   WN   + L
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSL--KWNIKGN-L 181

Query: 208 IASASVDKSIKIWDVR 223
           ++   V K + I D R
Sbjct: 182 LSGTCVGKHMHIIDPR 197

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
             +  H   + +  ++  D   +AS S D +IK+WD
Sbjct: 6   KTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 185 TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
              +  H   + +  ++  D  L+AS S D ++++WD
Sbjct: 4   LRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
             ++T K H   V +  ++P       S S D T+++WD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD--------HH 279
           P+  L GH  ++  ++F+P    +LAS S D+T+ +W+    D  V            H 
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA 316
            + ++ +D + +   ++ S+G+D  V +W    + RA
Sbjct: 126 KKISI-IDWNPMNYYIMCSSGFDSFVNIWDIENEKRA 161

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
             +RT K H   V +  ++P   ++  S S D T+R+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134
           +   +++L  HT  V S  ++P  +    + S D T+KLW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134
             +R+L  HT  V S  ++P       + S D TV++W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
PTZ00420	568	coronin; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0270	463	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0639	705	consensus Transducin-like enhancer of split protei	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG4328	498	consensus WD40 protein [Function unknown]	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.97
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0267	825	consensus Microtubule severing protein katanin p80	99.97
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.96
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1188	376	consensus WD40 repeat protein [General function pr	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.92
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.92
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
PRK11028	330	6-phosphogluconolactonase; Provisional	99.91
KOG0649	325	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG0649	325	consensus WD40 repeat protein [General function pr	99.89
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.89
KOG1963	792	consensus WD40 repeat protein [General function pr	99.89
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.88
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG1334	559	consensus WD40 repeat protein [General function pr	99.86
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
KOG2139	445	consensus WD40 repeat protein [General function pr	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.84
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.84
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.84
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.84
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.82
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.82
KOG2321	703	consensus WD40 repeat protein [General function pr	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
PRK02889	427	tolB translocation protein TolB; Provisional	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.76
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.75
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG2321	703	consensus WD40 repeat protein [General function pr	99.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
PRK00178	430	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.68
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.66
KOG4547	541	consensus WD40 repeat-containing protein [General	99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
PRK04792	448	tolB translocation protein TolB; Provisional	99.65
PRK01029	428	tolB translocation protein TolB; Provisional	99.63
KOG4547	541	consensus WD40 repeat-containing protein [General	99.62
KOG2315	566	consensus Predicted translation initiation factor	99.62
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
KOG2315	566	consensus Predicted translation initiation factor	99.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.53
KOG2314	698	consensus Translation initiation factor 3, subunit	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.52
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.52
PRK04792	448	tolB translocation protein TolB; Provisional	99.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.51
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.51
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.51
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.51
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.49
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.48
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.46
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.45
PRK04043	419	tolB translocation protein TolB; Provisional	99.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.4
COG4946	668	Uncharacterized protein related to the periplasmic	99.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.39
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.37
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.37
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.34
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.3
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.29
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.29
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.28
PRK04043	419	tolB translocation protein TolB; Provisional	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.22
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.14
COG4946	668	Uncharacterized protein related to the periplasmic	99.13
KOG2314	698	consensus Translation initiation factor 3, subunit	99.12
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.1
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.1
KOG2695	425	consensus WD40 repeat protein [General function pr	99.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.09
KOG2695	425	consensus WD40 repeat protein [General function pr	99.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.09
KOG1008	783	consensus Uncharacterized conserved protein, conta	99.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.06
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.06
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.99
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.98
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.89
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.85
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.8
KOG3621	726	consensus WD40 repeat-containing protein [General	98.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.76
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.67
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.64
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.58
PRK02888	635	nitrous-oxide reductase; Validated	98.57
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.55
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.54
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.54
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.47
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.41
KOG3621	726	consensus WD40 repeat-containing protein [General	98.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.4
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.4
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.37
COG3391	381	Uncharacterized conserved protein [Function unknow	98.35
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.34
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.32
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.24
COG3391	381	Uncharacterized conserved protein [Function unknow	98.23
PRK02888	635	nitrous-oxide reductase; Validated	98.23
KOG2395	644	consensus Protein involved in vacuole import and d	98.19
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.19
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.18
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.17
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.13
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.1
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.08
KOG2444	238	consensus WD40 repeat protein [General function pr	98.07
PF14727	418	PHTB1_N: PTHB1 N-terminus	98.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.93
KOG2395	644	consensus Protein involved in vacuole import and d	97.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.81
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.78
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.76
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.73
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.73
PRK13616	591	lipoprotein LpqB; Provisional	97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.69
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.66
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.66
PHA02713	557	hypothetical protein; Provisional	97.66
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.64
PHA02713	557	hypothetical protein; Provisional	97.63
PRK13616	591	lipoprotein LpqB; Provisional	97.56
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.56
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.42
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.4
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.39
KOG2444	238	consensus WD40 repeat protein [General function pr	97.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.33
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.3
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.2
PRK10115	686	protease 2; Provisional	97.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.15
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.09
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.01
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.97
PRK10115	686	protease 2; Provisional	96.95
COG5167	776	VID27 Protein involved in vacuole import and degra	96.95
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.87
PHA03098	534	kelch-like protein; Provisional	96.87
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.8
COG5276	370	Uncharacterized conserved protein [Function unknow	96.78
PHA03098	534	kelch-like protein; Provisional	96.7
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.61
PHA02790	480	Kelch-like protein; Provisional	96.58
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.53
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.45
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.31
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.13
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.12
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.07
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.99
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.95
PHA02790	480	Kelch-like protein; Provisional	95.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.92
PRK13684	334	Ycf48-like protein; Provisional	95.9
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.81
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.8
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.77
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.77
COG5167	776	VID27 Protein involved in vacuole import and degra	95.77
KOG2247	615	consensus WD40 repeat-containing protein [General	95.74
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.48
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.43
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.42
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.3
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.27
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.19
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.14
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.13
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.02
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.02
KOG2247	615	consensus WD40 repeat-containing protein [General	94.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.9
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.76
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.71
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.69
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.68
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.68
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.64
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.6
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.56
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.27
COG4590	733	ABC-type uncharacterized transport system, permeas	94.27
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.17
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	94.0
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.93
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.82
PRK13684	334	Ycf48-like protein; Provisional	93.7
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.69
COG5276	370	Uncharacterized conserved protein [Function unknow	93.56
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.29
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.0
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.87
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.73
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.55
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.36
COG4590	733	ABC-type uncharacterized transport system, permeas	92.36
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.9
COG3292	671	Predicted periplasmic ligand-binding sensor domain	91.48
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.41
PLN02153	341	epithiospecifier protein	91.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.15
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.12
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.77
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.53
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	90.15
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.0
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.74
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.7
PF08954	136	DUF1900: Domain of unknown function (DUF1900); Int	89.67
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.13
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.04
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	88.83
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.79
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.7
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	88.56
PLN02153	341	epithiospecifier protein	88.26
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.22
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	88.21
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.77
PLN02193	470	nitrile-specifier protein	87.15
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.62
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.28
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	86.11
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	85.67

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-54  Score=313.79  Aligned_cols=307  Identities=53%  Similarity=0.969  Sum_probs=286.7

Q ss_pred             CCceecC-cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121            1 MPVFKTP-FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         1 ~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      |+++..+ ..-+++.|||..++++++++.+.|+..+.|++.|.++.... .+.+...++..+.+..++|++..++.++++
T Consensus         1 m~~~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a   79 (311)
T KOG0277|consen    1 MQTHTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-GIQECQSYDTEDGLFDVAWSENHENQVIAA   79 (311)
T ss_pred             CcceecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCC-CeEEEEeeecccceeEeeecCCCcceEEEE
Confidence            6777765 78899999999999999999999999999999999997333 377888889999999999999988999999


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (317)
                      +.||++++||+.  ....++..++.|..+|.++.|++..+..+++++.|++|++|+...++.+.++.+|...|....|+|
T Consensus        80 ~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp  157 (311)
T KOG0277|consen   80 SGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP  157 (311)
T ss_pred             ecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCC
Confidence            999999999965  345789999999999999999998887899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      ..++++++++.|+.+++||++.......+..|...+.++.|+..+.++++||+.|+.|+.||+++.+.++..+.+|+-.|
T Consensus       158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV  237 (311)
T KOG0277|consen  158 HIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV  237 (311)
T ss_pred             CCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEE
Confidence            99999999999999999999987777778999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.++|||....+|++++.|-+++|||...+...+...+.|...+.++.|++..+.++|+++.|+.++||+.
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999999888999999999999999998887888999999999999999987889999999999999984

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-53  Score=323.06  Aligned_cols=290  Identities=25%  Similarity=0.373  Sum_probs=259.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..+|.|++|+|  ++..+++++.      |.++++||+....+   .....+|...|.|++|+||| ..||+|+.||+|
T Consensus       114 H~e~Vl~~~fsp--~g~~l~tGsG------D~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I  181 (480)
T KOG0271|consen  114 HGEAVLSVQFSP--TGSRLVTGSG------DTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSI  181 (480)
T ss_pred             CCCcEEEEEecC--CCceEEecCC------CceEEeeccCCCCc---ceeecCCccEEEEEEECCCc-chhhccccCCeE
Confidence            788999999999  6777777764      89999999998764   22334799999999999999 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEec-----CCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNP-----TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      ++||.+++  ......+.+|+..|++++|.|     ..+ +|++++.||.|+|||+..++++..+.+|+.+|+|+.|-- 
T Consensus       182 ~lwdpktg--~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-  257 (480)
T KOG0271|consen  182 RLWDPKTG--QQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-  257 (480)
T ss_pred             EEecCCCC--CcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-
Confidence            99998866  245567899999999999975     344 899999999999999999999999999999999999974 


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec-----------CC------------------------CC
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-----------KY------------------------DD  205 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~-----------~~------------------------~~  205 (317)
                       ..++++++.|++|++|+...+.....+++|...|+.++.+           |.                        .+
T Consensus       258 -~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  258 -EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             -CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence             5799999999999999999999999999999999999876           20                        23


Q ss_pred             cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEe
Q 021121          206 CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG  285 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~  285 (317)
                      ..+++|+.|.++.+|+....++++....+|..-|+.+.|||+++ ++++++.|..|++||-++++ .+..+++|-++|+.
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYq  414 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQ  414 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcc-hhhhhhhccceeEE
Confidence            35999999999999999988888999999999999999999999 79999999999999999997 67899999999999


Q ss_pred             EEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          286 VDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       286 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      ++|+.| .++|++|+.|.++++|++.+...
T Consensus       415 vawsaD-sRLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  415 VAWSAD-SRLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             EEeccC-ccEEEEcCCCceEEEEEeeeeee
Confidence            999998 88999999999999999987643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-53  Score=326.54  Aligned_cols=286  Identities=23%  Similarity=0.385  Sum_probs=263.1

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVAD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d   82 (317)
                      +....++..+.|++  ++..+++++      ++|.+++|+....+ .  .....+|.+.|.++.|+|. .+..+++|+.|
T Consensus       172 ~gd~rPis~~~fS~--ds~~laT~s------wsG~~kvW~~~~~~-~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  172 VGDTRPISGCSFSR--DSKHLATGS------WSGLVKVWSVPQCN-L--LQTLRGHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             ccCCCcceeeEeec--CCCeEEEee------cCCceeEeecCCcc-e--eEEEeccccceeeEEEccCCCccceeeeccC
Confidence            44567899999999  567777776      39999999988763 2  2333489999999999998 45799999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      |++++|+++..   .++..+.+|...|..++|+|+|+ +|++++.|.+-++||++++..+....+|...|.+++|+|+ +
T Consensus       241 gtvklw~~~~e---~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D-G  315 (459)
T KOG0272|consen  241 GTVKLWKLSQE---TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD-G  315 (459)
T ss_pred             CceeeeccCCC---cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCC-C
Confidence            99999999876   88899999999999999999999 9999999999999999999999999999999999999999 9


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      .++++|+.|..-+|||+|+++++..+.+|..+|.+++|+| +|..+|+|+.|++++|||++..+ .+..+.+|..-|+.+
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~-~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRS-ELYTIPAHSNLVSQV  393 (459)
T ss_pred             ceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccc-cceecccccchhhhe
Confidence            9999999999999999999999999999999999999999 99999999999999999999866 489999999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +|+|...++|+|++.|++++||..++.. +++.+.+|++.|.+++.+++ +..++|++.|+++++|.
T Consensus       394 k~~p~~g~fL~TasyD~t~kiWs~~~~~-~~ksLaGHe~kV~s~Dis~d-~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  394 KYSPQEGYFLVTASYDNTVKIWSTRTWS-PLKSLAGHEGKVISLDISPD-SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EecccCCeEEEEcccCcceeeecCCCcc-cchhhcCCccceEEEEeccC-CceEEEeccCceeeecc
Confidence            9999666699999999999999998887 77899999999999999999 89999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.2e-52  Score=316.12  Aligned_cols=284  Identities=28%  Similarity=0.386  Sum_probs=256.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC----CCCeEEEEEc
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES----HDSLLIAAVA   81 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~   81 (317)
                      |..-|.|++|+|  ++..++++..      +|.|++||..+++..-..+.  +|...|++++|.|-    +..+||+++.
T Consensus       156 H~~WVlcvawsP--Dgk~iASG~~------dg~I~lwdpktg~~~g~~l~--gH~K~It~Lawep~hl~p~~r~las~sk  225 (480)
T KOG0271|consen  156 HKNWVLCVAWSP--DGKKIASGSK------DGSIRLWDPKTGQQIGRALR--GHKKWITALAWEPLHLVPPCRRLASSSK  225 (480)
T ss_pred             CccEEEEEEECC--Ccchhhcccc------CCeEEEecCCCCCccccccc--CcccceeEEeecccccCCCccceecccC
Confidence            677899999999  7888888887      99999999988875555554  89999999999872    2358999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec--
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--  159 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--  159 (317)
                      ||.|+|||+..+   .++..+.+|..+|+|++|--+|  ++++|+.|++|++|+...|.+.+.+++|...|+.++.+-  
T Consensus       226 Dg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy  300 (480)
T KOG0271|consen  226 DGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY  300 (480)
T ss_pred             CCCEEEEEccCc---eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh
Confidence            999999999866   7888899999999999998655  899999999999999999999999999999999998872  


Q ss_pred             ---------C------------------------CCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCC
Q 021121          160 ---------R------------------------HSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDD  205 (317)
Q Consensus       160 ---------~------------------------~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~  205 (317)
                               .                        ++..+++|++|.++.+|+.... +++..+.+|..-|+.+.|+| ++
T Consensus       301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~  379 (480)
T KOG0271|consen  301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DG  379 (480)
T ss_pred             hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-Cc
Confidence                     1                        2446999999999999998755 47778889999999999999 99


Q ss_pred             cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEe
Q 021121          206 CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG  285 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~  285 (317)
                      +++|+++.|..|++||.++++. +..+++|-.+|+.++|+.|.+ +|++|+.|.++++||+++.+ +...+.+|...|.+
T Consensus       380 r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK-l~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  380 RYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK-LKQDLPGHADEVFA  456 (480)
T ss_pred             cEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee-ecccCCCCCceEEE
Confidence            9999999999999999999885 889999999999999999998 89999999999999999976 77889999999999


Q ss_pred             EEEEeccCCeEEEeecCCcEEEEe
Q 021121          286 VDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       286 ~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +.|+|| +..+++|+.|..+++|.
T Consensus       457 vDwspD-G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  457 VDWSPD-GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEecCC-CceeecCCCceEEEeec
Confidence            999999 89999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-47  Score=283.31  Aligned_cols=285  Identities=23%  Similarity=0.334  Sum_probs=252.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|+++.|++  +.+.+++.++      ||++.|||.-+.+. ...+.  -....|..++|+|.+ +++|+|+-|+..
T Consensus        54 H~~Ki~~~~ws~--Dsr~ivSaSq------DGklIvWDs~TtnK-~haip--l~s~WVMtCA~sPSg-~~VAcGGLdN~C  121 (343)
T KOG0286|consen   54 HLNKIYAMDWST--DSRRIVSASQ------DGKLIVWDSFTTNK-VHAIP--LPSSWVMTCAYSPSG-NFVACGGLDNKC  121 (343)
T ss_pred             cccceeeeEecC--CcCeEEeecc------CCeEEEEEcccccc-eeEEe--cCceeEEEEEECCCC-CeEEecCcCcee
Confidence            778999999999  6788888887      99999999877652 11221  245679999999998 699999999999


Q ss_pred             EEEEeCCCCCC---CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           86 KIYDTALPPTA---NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        86 ~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      .||++...+..   ...+.+.+|.+.+.|+.|.+|+  .|++++.|.+..+||+++++.+..+.+|.+.|.++.++|.++
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence            99999865322   4455688999999999999875  599999999999999999999999999999999999999559


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCcee
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVR  240 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~  240 (317)
                      +.+++|+-|+..++||+|.+...+.+.+|+..|+++.|.| ++.-+++|++|++.++||+|..++ +..+.  .-..+|+
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~git  277 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGIT  277 (343)
T ss_pred             CeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCce
Confidence            9999999999999999999999999999999999999999 999999999999999999998764 44443  3346899


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +++||..|+ +|++|..|.++.+||.-.++ .+..+.+|+..|.++..+|+ +..++||+.|..++||.
T Consensus       278 Sv~FS~SGR-lLfagy~d~~c~vWDtlk~e-~vg~L~GHeNRvScl~~s~D-G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  278 SVAFSKSGR-LLFAGYDDFTCNVWDTLKGE-RVGVLAGHENRVSCLGVSPD-GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEEEccccc-EEEeeecCCceeEeeccccc-eEEEeeccCCeeEEEEECCC-CcEEEecchhHheeecC
Confidence            999999999 79999999999999998876 67889999999999999999 89999999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-47  Score=292.83  Aligned_cols=286  Identities=22%  Similarity=0.407  Sum_probs=253.4

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      .-+|..+.|.|  +++-+++++.      .|.+.+|+...-.   .+.....|..+|+++.|++++ ..+++|..+|.|+
T Consensus        96 kc~V~~v~WtP--eGRRLltgs~------SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iK  163 (464)
T KOG0284|consen   96 KCPVNVVRWTP--EGRRLLTGSQ------SGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIK  163 (464)
T ss_pred             ccceeeEEEcC--CCceeEeecc------cccEEEecCceee---HHHHhhhhcccceeEEEccCC-CEEEEcCCCceEE
Confidence            45788999999  5554555544      8999999985543   233445799999999999998 6999999999999


Q ss_pred             EEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           87 IYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +|+..-    ..+..++.| ...|.+++|+|... .+++++.||+|+|||....+....+.+|.-.|.+++|+|. ..++
T Consensus       164 yWqpnm----nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~-kgLi  237 (464)
T KOG0284|consen  164 YWQPNM----NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT-KGLI  237 (464)
T ss_pred             ecccch----hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc-ccee
Confidence            999754    344455554 59999999999877 9999999999999999999998999999999999999999 8899


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++++.|..|++||.++++++.++..|+..|..+.|+| ++++|++++.|..+++||+++.+. +..+++|...|+++.|+
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkdv~~~~Wh  315 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKE-LFTYRGHKKDVTSLTWH  315 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHH-HHHhhcchhhheeeccc
Confidence            9999999999999999999999999999999999999 889999999999999999997664 78889999999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |-...+|.+|+.||.|..|.+...+++...-..|...|.+++|+|- +.+|++|+.|.++++|.-...
T Consensus       316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-Ghil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-GHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             cccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc-ceeEeecCCCcceeeeccCCC
Confidence            9988899999999999999998777666677789999999999999 899999999999999987654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-46  Score=290.49  Aligned_cols=247  Identities=25%  Similarity=0.402  Sum_probs=231.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC-CCCEEEEEcCCCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT-RRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~  136 (317)
                      +...+|..+.|++++ ..|++|+.+|.+++|+....   ..+..+.+|.+.|.++.|+|. ....+++|+.||++++|++
T Consensus       173 gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCC-CeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            456789999999998 69999999999999998765   788899999999999999998 3448999999999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      ++...+..+.+|...|..++|+|+ +++|++++.|.+-++||++++..+....+|..+|.+++|+| +|.++++|+.|..
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSL  326 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCC-CceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccch
Confidence            999999999999999999999999 99999999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      -+|||+|++++ +..+.+|..+|.+++|+|+|- .||||+.|++++|||++..+ .+..+.+|..-|+.+.|+|+.+.+|
T Consensus       327 ~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  327 GRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS-ELYTIPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             hheeecccCcE-EEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc-cceecccccchhhheEecccCCeEE
Confidence            99999999885 888999999999999999997 69999999999999999877 4789999999999999999778999


Q ss_pred             EEeecCCcEEEEecCCC
Q 021121          297 ASTGWDELVYVWQQGMD  313 (317)
Q Consensus       297 ~s~~~dg~i~~w~~~~~  313 (317)
                      +|++.|+++++|.-..-
T Consensus       404 ~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  404 VTASYDNTVKIWSTRTW  420 (459)
T ss_pred             EEcccCcceeeecCCCc
Confidence            99999999999987653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-43  Score=258.66  Aligned_cols=288  Identities=20%  Similarity=0.276  Sum_probs=238.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce--eeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT--ELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      |++.|+.++..+. +..++.+.+.      |..+.+|++......+-  .....+|...|..+..+++| +++++++.|+
T Consensus        14 h~d~Vt~la~~~~-~~~~l~sasr------Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~   85 (315)
T KOG0279|consen   14 HTDWVTALAIKIK-NSDILVSASR------DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDG   85 (315)
T ss_pred             CCceEEEEEeecC-CCceEEEccc------ceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccc
Confidence            7899999999997 3445555554      89999999987654331  22233788899999999998 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCC-
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRH-  161 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-  161 (317)
                      ++++||+..+   +..+.+.+|...|.+++|+++.. .+++|+.|.+|++|+............. .+.|.|+.|+|+. 
T Consensus        86 ~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   86 TLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             eEEEEEecCC---cEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence            9999999877   78888999999999999999988 8999999999999998755443333322 7899999999985 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ..+|++++.|++|++||+++.+....+.+|...++.++++| +|.++++|+.||.+.+||++..+. +..+ +|...|.+
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~-lysl-~a~~~v~s  238 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKN-LYSL-EAFDIVNS  238 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCce-eEec-cCCCeEee
Confidence            56899999999999999999999999999999999999999 999999999999999999999775 5555 47789999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeee----cc-----cceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD----HH-----TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ++|+|+.. .|+. ..+..|+|||+.++. ++..+.    +.     .....+++|+++ +..|++|-.|+.|++|.+..
T Consensus       239 l~fspnry-wL~~-at~~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~d-G~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  239 LCFSPNRY-WLCA-ATATSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSAD-GQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEecCCce-eEee-ccCCceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCC-CcEEEeeecCCcEEEEEeec
Confidence            99999874 4544 456679999999876 222222    11     334678899999 89999999999999999853

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.2e-44  Score=279.35  Aligned_cols=292  Identities=24%  Similarity=0.384  Sum_probs=252.0

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCccee-------e----eeecCCCCeeEEEecCCC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTE-------L----VAFDTADGVYDLAWSESH   72 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~-------~----~~~~~~~~v~~~~~~~~~   72 (317)
                      +.|..+|.+++|+|-.++.+ ++++.      +...++|++.........       +    ........|++++|+.+|
T Consensus       175 l~~~~~V~~~~WnP~~~~ll-asg~~------~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G  247 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLL-ASGSG------DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG  247 (524)
T ss_pred             ccCCCceEEEecCchhhhhh-hccCC------ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC
Confidence            34788999999999644444 44443      789999999852111111       1    112345689999999998


Q ss_pred             CCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce
Q 021121           73 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV  152 (317)
Q Consensus        73 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  152 (317)
                       .+||+|+.||.+++|+...    ..+.++..|+++|.++.|+..|. +|++++.|+++.+||..+++..+.+.-|..+-
T Consensus       248 -~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  248 -TLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPA  321 (524)
T ss_pred             -CeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence             6999999999999999653    67888999999999999999998 99999999999999999999999999888887


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      ..+.|-.  ..-+++++.|+.|+++.+....++.++.+|.++|.++.|+| .+.+|++++.|+++++|...... ....+
T Consensus       322 lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~-~~~~l  397 (524)
T KOG0273|consen  322 LDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN-SVHDL  397 (524)
T ss_pred             cceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc-chhhh
Confidence            8899985  46788999999999999999999999999999999999999 99999999999999999987755 47888


Q ss_pred             ecCCCceeEEEecCCCC--------eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc
Q 021121          233 NGHGYAVRKVKFSPHRR--------NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL  304 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  304 (317)
                      .+|...|..+.|+|.++        ..+++++.|++|++||+..+. ++..+..|..+|++++|+|+ +.++|+|+.||.
T Consensus       398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~-g~ylAsGs~dg~  475 (524)
T KOG0273|consen  398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPN-GRYLASGSLDGC  475 (524)
T ss_pred             hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCC-CcEEEecCCCCe
Confidence            99999999999999763        268999999999999999987 66788899999999999999 899999999999


Q ss_pred             EEEEecCCCC
Q 021121          305 VYVWQQGMDP  314 (317)
Q Consensus       305 i~~w~~~~~~  314 (317)
                      |.+|+..+.+
T Consensus       476 V~iws~~~~~  485 (524)
T KOG0273|consen  476 VHIWSTKTGK  485 (524)
T ss_pred             eEeccccchh
Confidence            9999987653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5e-43  Score=253.45  Aligned_cols=267  Identities=21%  Similarity=0.321  Sum_probs=231.7

Q ss_pred             CceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      |.+|++|...++.    ....+. ....|+.+...|++ ..||+++. -.|++||+.+. ...++.++.+|...|+++.|
T Consensus        19 DhTIRfWqa~tG~----C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~-np~Pv~t~e~h~kNVtaVgF   91 (311)
T KOG0315|consen   19 DHTIRFWQALTGI----CSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSN-NPNPVATFEGHTKNVTAVGF   91 (311)
T ss_pred             cceeeeeehhcCe----EEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCC-CCCceeEEeccCCceEEEEE
Confidence            8999999998875    233333 45689999999997 57877765 56999999986 44588999999999999999


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-ccCcc
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-PAHEF  193 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~  193 (317)
                      ..+|+ .+++|+.||+++|||++...+.+.++ +..+|+++..+|+ ...|++|..+|.|++||+.+......+ +....
T Consensus        92 ~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   92 QCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             eecCe-EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            99998 99999999999999999987777776 6799999999998 777889999999999999987555544 34556


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-----ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYR-----VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      ++.++...| ++.+++.+...|..++|++-...     .|+..++.|++.+..+.+||+++ +|++++.|.+++||+.++
T Consensus       169 ~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  169 SIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             ceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCC
Confidence            899999999 99999999999999999987533     36677889999999999999999 799999999999999988


Q ss_pred             ccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       269 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      --.....+.+|...+.+.+||.+ +.+|++|+.|+.+++|++...++
T Consensus       247 ~~kle~~l~gh~rWvWdc~FS~d-g~YlvTassd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  247 FFKLELVLTGHQRWVWDCAFSAD-GEYLVTASSDHTARLWDLSAGKE  292 (311)
T ss_pred             ceeeEEEeecCCceEEeeeeccC-ccEEEecCCCCceeecccccCce
Confidence            74456778899999999999999 89999999999999999988763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-42  Score=254.00  Aligned_cols=286  Identities=21%  Similarity=0.292  Sum_probs=240.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC-CcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA-PALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +.+.+..++|+|- .+.++++++.      |..|++|+..... ...+....-.|+..|+.++|+|.| ++|++|+.|.+
T Consensus        13 h~~r~W~~awhp~-~g~ilAscg~------Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t   84 (312)
T KOG0645|consen   13 HKDRVWSVAWHPG-KGVILASCGT------DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDAT   84 (312)
T ss_pred             CCCcEEEEEeccC-CceEEEeecC------CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccce
Confidence            6678999999992 2778888886      9999999998522 122222233689999999999998 59999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC---ceeEEeeccccceEEEEEecCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP---TSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      +.||.-.. ...+++..+++|...|.|++|+++|. +||+++.|..|.||.+..+   ++...++.|...|..+.|+|. 
T Consensus        85 ~~Iw~k~~-~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt-  161 (312)
T KOG0645|consen   85 VVIWKKED-GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-  161 (312)
T ss_pred             EEEeecCC-CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-
Confidence            99998654 46678889999999999999999998 9999999999999999754   567788999999999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121          162 SDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA  238 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  238 (317)
                      ..+|++++.|.+|++|+-...   .+..++.+|...|.+++|+| .|..+++++.|++++||-....     .-..|..+
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~  235 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRA  235 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhcccc
Confidence            889999999999999987632   56888999999999999999 9999999999999999986632     11236778


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEeccccc------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVED------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +..+.|. ++  +|++++.|+.|++|.-...-      .+...-..|+..|++++|.|...++|++|+.||.|++|.+.
T Consensus       236 ~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  236 LYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999998 44  69999999999999865421      22234457888999999999667899999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.5e-44  Score=295.04  Aligned_cols=247  Identities=27%  Similarity=0.464  Sum_probs=228.4

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC----------------------------CCCCceeeccCCcce
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP----------------------------TANPIRSLHEHTREV  109 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~----------------------------~~~~~~~~~~~~~~v  109 (317)
                      .....++|..|++++ .+||.|..|..|++|.+...+                            .......+.+|.++|
T Consensus       376 nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            566789999999998 699999999999999987420                            111234467899999


Q ss_pred             EEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121          110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP  189 (317)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (317)
                      ..+.|+|+.+ +|++++.|+++++|.+.+..++-.+++|..||+.+.|+|. +.+|++++.|++.++|......+++.+.
T Consensus       455 yg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  455 YGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             eeeeeccccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhc
Confidence            9999999988 9999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      +|-+.+.|+.|+| +.+++++|+.|.++++||..++.. ++.+.+|.++|.+++|+|+|+ +|++|+.||.|++||+.++
T Consensus       533 ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  533 GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             ccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCC
Confidence            9999999999999 999999999999999999999875 899999999999999999999 7999999999999999998


Q ss_pred             cceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          270 DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       270 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      + ++..+.+|.+.|.++.|+.+ +..|++||.|.+|++||+..
T Consensus       610 ~-~v~~l~~Ht~ti~SlsFS~d-g~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  610 S-LVKQLKGHTGTIYSLSFSRD-GNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             c-chhhhhcccCceeEEEEecC-CCEEEecCCCCeEEEEEchh
Confidence            7 66788999999999999999 89999999999999999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-41  Score=266.05  Aligned_cols=282  Identities=25%  Similarity=0.394  Sum_probs=249.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ....|++++|+.  ++.+++++..      +|.++||+.....  ...+  -.|+++|.++.|+..| .+|++++.|+++
T Consensus       234 ~nkdVT~L~Wn~--~G~~LatG~~------~G~~riw~~~G~l--~~tl--~~HkgPI~slKWnk~G-~yilS~~vD~tt  300 (524)
T KOG0273|consen  234 SNKDVTSLDWNN--DGTLLATGSE------DGEARIWNKDGNL--ISTL--GQHKGPIFSLKWNKKG-TYILSGGVDGTT  300 (524)
T ss_pred             ccCCcceEEecC--CCCeEEEeec------CcEEEEEecCchh--hhhh--hccCCceEEEEEcCCC-CEEEeccCCccE
Confidence            456899999999  7888888876      9999999987653  2222  3699999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      .+||..++   .....+.-|..+-..+.|-.+.  .+++++.||.|+++.+....++.++.+|.++|.++.|+|. +.+|
T Consensus       301 ilwd~~~g---~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LL  374 (524)
T KOG0273|consen  301 ILWDAHTG---TVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLL  374 (524)
T ss_pred             EEEeccCc---eEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceE
Confidence            99998776   6666677788887889998665  5999999999999999999999999999999999999999 9999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC--------CCcEEEEEecCCcEEEEEccCCCccEEEEecCCC
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY--------DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~--------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      ++++.|++++||.+........+..|...|..+.|+|.        .+..+++++.|++|++||+..+. ++..+..|..
T Consensus       375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~  453 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQE  453 (524)
T ss_pred             EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCC
Confidence            99999999999999998899999999999999999983        34579999999999999999876 5888989999


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +|.+++|+|+++ ++++|+.||.|.+|++++++ +++.+.+. +.|..++|+.+ ++.|..+-.|+.+++-|+.
T Consensus       454 pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~-l~~s~~~~-~~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  454 PVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGK-LVKSYQGT-GGIFELCWNAA-GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ceEEEEecCCCc-EEEecCCCCeeEeccccchh-eeEeecCC-CeEEEEEEcCC-CCEEEEEecCCCceEEEec
Confidence            999999999999 79999999999999999987 66777664 55999999998 6888888899999998875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-42  Score=261.70  Aligned_cols=285  Identities=28%  Similarity=0.416  Sum_probs=255.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +..+|+.+-|+|  .-.+.+..++      |++|++||..++.-   .....+|...+.+++|+..| .++++++.|-.+
T Consensus       107 ~r~~vt~v~~hp--~~~~v~~as~------d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~  174 (406)
T KOG0295|consen  107 HRSSVTRVIFHP--SEALVVSASE------DATIKVFDTETGEL---ERSLRGHTDSVFDISFDASG-KYLATCSSDLSA  174 (406)
T ss_pred             cccceeeeeecc--CceEEEEecC------CceEEEEEccchhh---hhhhhccccceeEEEEecCc-cEEEecCCccch
Confidence            667899999999  5555565555      89999999998763   22233788899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||...  ...+++.+.+|...|.+++|-|.|. ++++++.|.+|+.|++.++.++.++.+|...|..++.+.| +.++
T Consensus       175 ~LWd~~~--~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D-Gti~  250 (406)
T KOG0295|consen  175 KLWDFDT--FFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD-GTII  250 (406)
T ss_pred             hheeHHH--HHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCC-eeEE
Confidence            9999874  3567778889999999999999996 9999999999999999999999999999999999999998 9999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC--------------CCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY--------------DDCLIASASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~--------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      ++++.|.+|++|-+.++++...+..|+.++-+++|.|.              .++++++++.|++|++||+.++. ++.+
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~t  329 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFT  329 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEE
Confidence            99999999999999999888999999999999999773              23689999999999999999987 5889


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.+|...|..++|+|.|+ ||+++.+|+++++||+++.+ +...+..|+..+++++|..+ ..+++||+-|..+++|.-
T Consensus       330 L~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~-cmk~~~ah~hfvt~lDfh~~-~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  330 LVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQ-CMKTLEAHEHFVTSLDFHKT-APYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccce-eeeccCCCcceeEEEecCCC-CceEEeccccceeeeeec
Confidence            999999999999999999 79999999999999999987 66788899999999999987 679999999999999963

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-41  Score=282.11  Aligned_cols=269  Identities=26%  Similarity=0.389  Sum_probs=236.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC----------------------------Ccceeeeee
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA----------------------------PALTELVAF   57 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----------------------------~~~~~~~~~   57 (317)
                      ....+.|..|++  +..+++++-.      |..|++|.+.+..                            .........
T Consensus       377 t~~~v~ca~fSd--dssmlA~Gf~------dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  377 TYQGVTCAEFSD--DSSMLACGFV------DSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             cCCcceeEeecC--Ccchhhcccc------ccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            567889999999  5566666665      8899999998421                            011123355


Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      +|.++|..+.|+|+. ++|++++.|+++|+|.+.+.   ..+..+++|..+|+.+.|+|.|- ++++++.|++.++|...
T Consensus       449 GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTD  523 (707)
T ss_pred             cCCCceeeeeecccc-cceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCce-EEEecCCCceeeeeecc
Confidence            899999999999997 79999999999999999876   78888999999999999999987 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      ...+++.+.+|-+.|.|+.|+|+ .+++++|+.|.+|++||..++..++.+.+|..+|.+++|+| .|.+|++|+.|+.|
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLI  601 (707)
T ss_pred             cCCchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcE
Confidence            99999999999999999999999 99999999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc-----------------------eee
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-----------------------LVG  274 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------------------~~~  274 (317)
                      .+||+.+++ ++..+.+|.+.|.++.|+.+|. +|++|+.|.+|++||+.....                       ++.
T Consensus       602 ~iWDl~~~~-~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llg  679 (707)
T KOG0263|consen  602 KIWDLANGS-LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLG  679 (707)
T ss_pred             EEEEcCCCc-chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceee
Confidence            999999977 4888899999999999999998 899999999999999865321                       334


Q ss_pred             eeecccceeEeEEEEec
Q 021121          275 RYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       275 ~~~~~~~~v~~~~~~~~  291 (317)
                      .+.....+|..+.|...
T Consensus       680 s~~tK~tpv~~l~Ftrr  696 (707)
T KOG0263|consen  680 SFYTKNTPVVGLHFTRR  696 (707)
T ss_pred             eeeecCceEEEEEEecc
Confidence            44455667888888874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-41  Score=246.25  Aligned_cols=250  Identities=22%  Similarity=0.329  Sum_probs=216.6

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC--CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP--TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ..|++.|+.++..+.+...+++++.|..+.+|++....  .+.+++.+.+|...|..+..+++++ +.++++.|+.+++|
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlW   90 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLW   90 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-eEEeccccceEEEE
Confidence            37999999999999888899999999999999998652  2356788999999999999999998 99999999999999


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCC-CcEEEEEe
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYD-DCLIASAS  212 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~-~~~l~~~~  212 (317)
                      |+.+++..+.|.+|...|.+++|+|+ ...+++|+.|.+|++|+............ +...|.|+.|+|.. ..+|++++
T Consensus        91 Dl~~g~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen   91 DLATGESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             EecCCcEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence            99999999999999999999999999 88899999999999999875433333332 27789999999943 78999999


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      .|+++++||+++.+. ...+.+|++.++.+++||||. ++++|+.||.+.+||++.++. +. ...|...|.+++|+|+ 
T Consensus       170 ~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~-ly-sl~a~~~v~sl~fspn-  244 (315)
T KOG0279|consen  170 WDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN-LY-SLEAFDIVNSLCFSPN-  244 (315)
T ss_pred             CCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce-eE-eccCCCeEeeEEecCC-
Confidence            999999999998664 778889999999999999999 899999999999999999875 33 3456788999999996 


Q ss_pred             CCeEEEeecCCcEEEEecCCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                       .+.+....+..|+|||+....
T Consensus       245 -rywL~~at~~sIkIwdl~~~~  265 (315)
T KOG0279|consen  245 -RYWLCAATATSIKIWDLESKA  265 (315)
T ss_pred             -ceeEeeccCCceEEEeccchh
Confidence             444444556669999998753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.4e-41  Score=247.98  Aligned_cols=286  Identities=21%  Similarity=0.337  Sum_probs=249.3

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      ..|+..|+.+.|+|  ++.++++++.      |..|.+|+........-.+.  .|.++|..+.|.+++ +.+++++.|.
T Consensus        44 ~gh~geI~~~~F~P--~gs~~aSgG~------Dr~I~LWnv~gdceN~~~lk--gHsgAVM~l~~~~d~-s~i~S~gtDk  112 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHP--DGSCFASGGS------DRAIVLWNVYGDCENFWVLK--GHSGAVMELHGMRDG-SHILSCGTDK  112 (338)
T ss_pred             CCCcceEEEEEECC--CCCeEeecCC------cceEEEEeccccccceeeec--cccceeEeeeeccCC-CEEEEecCCc
Confidence            45889999999999  6777777775      99999999765543333333  899999999999998 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      +|+.||.+++   +.....+.|..-|+.+.-+..|..++.+++.||++++||+++...++.+. .+.+++++.|... +.
T Consensus       113 ~v~~wD~~tG---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~-s~  187 (338)
T KOG0265|consen  113 TVRGWDAETG---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDT-SD  187 (338)
T ss_pred             eEEEEecccc---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccc-cc
Confidence            9999999887   88888999999999999777788789999999999999999988888775 4677999999988 77


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC---CccEEEEecCC----
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY---RVPIAVLNGHG----  236 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~----  236 (317)
                      .+.+|+-|+.|++||++.......+.+|..+|+.+..+| ++.++.+-+.|.++++||++..   +.++..+.+|.    
T Consensus       188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe  266 (338)
T KOG0265|consen  188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE  266 (338)
T ss_pred             ceeeccccCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence            788999999999999999999999999999999999999 9999999999999999999853   23356666543    


Q ss_pred             CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      .....++|+|++. .+.+|+.|..+.+||..... ++..+.+|.+.|..++|+|. ..+|.+++.|.+|++=.
T Consensus       267 knlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~-~lyklpGh~gsvn~~~Fhp~-e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  267 KNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRR-ILYKLPGHYGSVNEVDFHPT-EPIILSCSSDKTIYLGE  336 (338)
T ss_pred             hhcceeeccCCCC-ccccccccceEEEeeccccc-EEEEcCCcceeEEEeeecCC-CcEEEEeccCceeEeec
Confidence            2446789999998 69999999999999987765 77899999999999999999 88999999999998643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-39  Score=294.58  Aligned_cols=289  Identities=17%  Similarity=0.279  Sum_probs=237.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC----CcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA----PALTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      |...|.+++|+|  ++.++++++.      |+.|+||++....    ..........+...+.+++|+|....+|++++.
T Consensus       482 ~~~~V~~i~fs~--dg~~latgg~------D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~  553 (793)
T PLN00181        482 SSNLVCAIGFDR--DGEFFATAGV------NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF  553 (793)
T ss_pred             CCCcEEEEEECC--CCCEEEEEeC------CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC
Confidence            677899999999  5666666665      9999999986421    111122233456689999999865579999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ||.|++||+...   +.+..+.+|...|++++|+|....+|++|+.||.|++||++++..+..+..+ ..+.++.|++.+
T Consensus       554 Dg~v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~  629 (793)
T PLN00181        554 EGVVQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSES  629 (793)
T ss_pred             CCeEEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCC
Confidence            999999999865   6677788999999999999744349999999999999999999888888754 679999997766


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCC-ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC-----CccEEEEecC
Q 021121          162 SDVFCSASGDCTLRIWDVREMG-STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY-----RVPIAVLNGH  235 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~  235 (317)
                      +.++++|+.||.|++||+++.+ ....+.+|...|.++.|.  ++.++++++.|+.|++||++..     ..++..+.+|
T Consensus       630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh  707 (793)
T PLN00181        630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH  707 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence            8999999999999999998765 466778899999999996  5678999999999999999753     2357788899


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee------------eeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG------------RYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      ...+..++|+|++. +|++|+.|+.|++|+.........            ....+...|.+++|+|+ +..|++|+.||
T Consensus       708 ~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~-~~~lva~~~dG  785 (793)
T PLN00181        708 TNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ-SSTLVAANSTG  785 (793)
T ss_pred             CCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC-CCeEEEecCCC
Confidence            99999999999998 799999999999999765432211            12345667999999998 78999999999


Q ss_pred             cEEEEec
Q 021121          304 LVYVWQQ  310 (317)
Q Consensus       304 ~i~~w~~  310 (317)
                      .|++|++
T Consensus       786 ~I~i~~~  792 (793)
T PLN00181        786 NIKILEM  792 (793)
T ss_pred             cEEEEec
Confidence            9999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-39  Score=262.08  Aligned_cols=282  Identities=28%  Similarity=0.422  Sum_probs=243.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..+|.+++|+|  ++.++++++.      +|.|++|++.....   ......|...+..+.|+|++ ..+++++.+|.|
T Consensus         8 h~~~i~~~~~~~--~~~~l~~~~~------~g~i~i~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i   75 (289)
T cd00200           8 HTGGVTCVAFSP--DGKLLATGSG------DGTIKVWDLETGEL---LRTLKGHTGPVRDVAASADG-TYLASGSSDKTI   75 (289)
T ss_pred             cCCCEEEEEEcC--CCCEEEEeec------CcEEEEEEeeCCCc---EEEEecCCcceeEEEECCCC-CEEEEEcCCCeE
Confidence            789999999999  4556666554      89999999987652   22223677788999999997 689999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++|++...   +....+..|...+.++.|++++. ++++++.+|.|.+||+++++....+..|...+.++.|+|+ +.++
T Consensus        76 ~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  150 (289)
T cd00200          76 RLWDLETG---ECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFV  150 (289)
T ss_pred             EEEEcCcc---cceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc-CCEE
Confidence            99999865   56667778889999999999966 8888888999999999988888888888899999999998 7888


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++++.++.|++||+++++....+..+...+.++.|+| +++.+++++.++.|++||++..+ .+..+..|...+.+++|+
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~  228 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFS  228 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCc-eecchhhcCCceEEEEEc
Confidence            8888899999999998888888888888999999999 88888888889999999998755 366666788899999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      |++. ++++++.|+.|++||+.+++ ....+..|...|.+++|+|+ +.+|++++.||.+++|+
T Consensus       229 ~~~~-~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         229 PDGY-LLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCc-EEEEEcCCCcEEEEEcCCce-eEEEccccCCcEEEEEECCC-CCEEEEecCCCeEEecC
Confidence            9966 78888889999999998765 55667788899999999998 78999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-40  Score=278.71  Aligned_cols=285  Identities=26%  Similarity=0.450  Sum_probs=245.0

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ...|.++.|+|  ++..++++..      ++.+++|+...... ....+  .+|...|++++|+|++ .++++++.|++|
T Consensus       159 ~~sv~~~~fs~--~g~~l~~~~~------~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~-~~l~s~s~D~ti  227 (456)
T KOG0266|consen  159 CPSVTCVDFSP--DGRALAAASS------DGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDG-SYLLSGSDDKTL  227 (456)
T ss_pred             cCceEEEEEcC--CCCeEEEccC------CCcEEEeecccccchhhccc--cccccceeeeEECCCC-cEEEEecCCceE
Confidence            57789999999  5666776665      89999999955441 11122  4789999999999998 599999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||+.  .....++.+.+|...|++++|+|+++ ++++|+.|++|++||++++++...+.+|...|++++|+++ ++++
T Consensus       228 riwd~~--~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d-~~~l  303 (456)
T KOG0266|consen  228 RIWDLK--DDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD-GNLL  303 (456)
T ss_pred             EEeecc--CCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC-CCEE
Confidence            999993  23477888999999999999999995 9999999999999999999999999999999999999999 8999


Q ss_pred             EEEeCCCeEEEEeCCCCC--ceeeeccCccc--eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc---
Q 021121          166 CSASGDCTLRIWDVREMG--STMIIPAHEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA---  238 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---  238 (317)
                      ++++.|+.|++||+.++.  +...+..+...  ++++.|+| ++.++++++.|+.+++||++.... .....+|...   
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~~~~  381 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKS-VGTYTGHSNLVRC  381 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcc-eeeecccCCccee
Confidence            999999999999999988  45666655554  99999999 999999999999999999998775 6677777664   


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc-cceeEeEEEEeccCCeEEEee--cCCcEEEEecC
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH-TEFAVGVDMSVLVEGLLASTG--WDELVYVWQQG  311 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~--~dg~i~~w~~~  311 (317)
                      +.+...++.++ ++++|+.|+.|++||+.++. .+..+.+| ...+..+.++|. ..++++++  .|+.+++|...
T Consensus       382 ~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~-~~~~l~~h~~~~~~~~~~~~~-~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  382 IFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG-ILQRLEGHSKAAVSDLSSHPT-ENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EecccccCCCC-eEEEEeCCceEEEEeCCccc-hhhhhcCCCCCceeccccCCC-cCeeeecCcCCCceEEEecCC
Confidence            44455577787 79999999999999999865 66788999 889999999998 88999988  79999999865

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-40  Score=251.61  Aligned_cols=283  Identities=22%  Similarity=0.306  Sum_probs=249.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..-|.|+++.|  .+.++++++.      |+.+.|||+.++..   .+...+|...|..+++++..+ ++++++.|+.|
T Consensus       150 HlgWVr~vavdP--~n~wf~tgs~------DrtikIwDlatg~L---kltltGhi~~vr~vavS~rHp-YlFs~gedk~V  217 (460)
T KOG0285|consen  150 HLGWVRSVAVDP--GNEWFATGSA------DRTIKIWDLATGQL---KLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQV  217 (460)
T ss_pred             ccceEEEEeeCC--CceeEEecCC------CceeEEEEcccCeE---EEeecchhheeeeeeecccCc-eEEEecCCCee
Confidence            667899999999  6888888876      99999999998762   233347999999999999884 99999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +.||++..   +.++.+.+|-+.|.|++.+|.-. .|++|+.|..+++||+++...+..+.+|..+|.++.+.|. ...+
T Consensus       218 KCwDLe~n---kvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-dpqv  292 (460)
T KOG0285|consen  218 KCWDLEYN---KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-DPQV  292 (460)
T ss_pred             EEEechhh---hhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-CCce
Confidence            99999876   88999999999999999999877 9999999999999999999999999999999999999998 5566


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++|+.|++|++||++.++....+..|...+.+++.+| ....+++++.| .|+-|++..+.. +..+.+|+.-|++++.+
T Consensus       293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f-~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEF-LQNLSGHNAIINTLSVN  369 (460)
T ss_pred             EEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccch-hhccccccceeeeeeec
Confidence            7999999999999999999999999999999999999 89999999876 599999998775 66689999999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeee---e-----cccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRY---D-----HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .|+  ++++|+++|.+.+||.+++... +..   .     ..+..|++.+|... +..|++|..|.+|++|.-+.
T Consensus       370 sD~--v~~~G~dng~~~fwdwksg~ny-Q~~~t~vqpGSl~sEagI~as~fDkt-g~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  370 SDG--VLVSGGDNGSIMFWDWKSGHNY-QRGQTIVQPGSLESEAGIFASCFDKT-GSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cCc--eEEEcCCceEEEEEecCcCccc-ccccccccCCccccccceeEEeeccc-CceEEeccCCcceEEEeccc
Confidence            887  7999999999999999987622 221   1     12456899999988 78999999999999998764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7e-40  Score=237.17  Aligned_cols=266  Identities=22%  Similarity=0.356  Sum_probs=222.3

Q ss_pred             eec-CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            4 FKT-PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         4 ~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      ++| ...|..++..|  +++.+++++       .-.|++||+++.++. .......|...|+++.|..+| +.+++|++|
T Consensus        36 iqh~dsqVNrLeiTp--dk~~LAaa~-------~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseD  104 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITP--DKKDLAAAG-------NQHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDG-RWMYTGSED  104 (311)
T ss_pred             EecCccceeeEEEcC--Ccchhhhcc-------CCeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecC-eEEEecCCC
Confidence            444 46899999999  455555554       449999999988753 223333688899999999998 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRH  161 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~  161 (317)
                      |+++|||++..   ...+.+ .|.++|+++..+|+.. .|++|..+|.|++||+.+..+...+- ....+|.++...|+ 
T Consensus       105 gt~kIWdlR~~---~~qR~~-~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d-  178 (311)
T KOG0315|consen  105 GTVKIWDLRSL---SCQRNY-QHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD-  178 (311)
T ss_pred             ceEEEEeccCc---ccchhc-cCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC-
Confidence            99999999874   344434 4779999999999987 89999999999999999886666553 34567999999999 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCC------CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          162 SDVFCSASGDCTLRIWDVREM------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +.+++.+...|..++|++-+.      +++.+++.|+..+..+.++| +.++|++++.|.+++||+..+.-.....+.+|
T Consensus       179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh  257 (311)
T KOG0315|consen  179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGH  257 (311)
T ss_pred             CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence            899999999999999998654      45567788999999999999 99999999999999999999873345668899


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEE
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  289 (317)
                      +..++.++||.+++ +|++|+.|+.+++|++..++ .+....+|..+..+++..
T Consensus       258 ~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k-~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  258 QRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGK-EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             CceEEeeeeccCcc-EEEecCCCCceeecccccCc-eeeecCCcccccEEEEee
Confidence            99999999999999 79999999999999999987 456778887777776653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.8e-39  Score=254.84  Aligned_cols=290  Identities=22%  Similarity=0.280  Sum_probs=238.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|-|..+-+++.++.       |+.|.+|+-.+-+  + ......|..-|+|+.|+||| .++++.+.||.|
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sd-------Dn~v~ffeGPPFK--F-k~s~r~HskFV~~VRysPDG-~~Fat~gsDgki  214 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSD-------DNTVAFFEGPPFK--F-KSSFREHSKFVNCVRYSPDG-SRFATAGSDGKI  214 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccC-------CCeEEEeeCCCee--e-eecccccccceeeEEECCCC-CeEEEecCCccE
Confidence            77889999999976666666555       8899999754432  1 22233688899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeec---cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE------------------
Q 021121           86 KIYDTALPPTANPIRSLH---EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT------------------  144 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------------  144 (317)
                      .+||=.++   +.+..+.   +|++.|.++.|+||+. .+++++.|.+++|||+.+.+++++                  
T Consensus       215 ~iyDGktg---e~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk  290 (603)
T KOG0318|consen  215 YIYDGKTG---EKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK  290 (603)
T ss_pred             EEEcCCCc---cEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC
Confidence            99997766   5555555   8999999999999998 899999999999999987644333                  


Q ss_pred             -------------------------eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-----------ee
Q 021121          145 -------------------------FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-----------II  188 (317)
Q Consensus       145 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~  188 (317)
                                               +.+|...|+++..+|+ +..|++|+.||.|.-||..++..-+           .+
T Consensus       291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~  369 (603)
T KOG0318|consen  291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM  369 (603)
T ss_pred             CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-CCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence                                     2578889999999999 7999999999999999986432110           00


Q ss_pred             --------------------------------------------------------------cc--------CccceEEE
Q 021121          189 --------------------------------------------------------------PA--------HEFEILAC  198 (317)
Q Consensus       189 --------------------------------------------------------------~~--------~~~~v~~i  198 (317)
                                                                                    +.        ..-...++
T Consensus       370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v  449 (603)
T KOG0318|consen  370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV  449 (603)
T ss_pred             eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence                                                                          00        00113567


Q ss_pred             EecCCCCcEEEEEecCCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee
Q 021121          199 DWNKYDDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD  277 (317)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  277 (317)
                      +++| +++.++.|+.|+.+++|.+.... ........|.++|++++|+|++. +|+++...+.+.+||+.+.+.....+.
T Consensus       450 Av~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~  527 (603)
T KOG0318|consen  450 AVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWA  527 (603)
T ss_pred             EEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceee
Confidence            7888 89999999999999999998755 33445678999999999999999 799999999999999999887667777


Q ss_pred             cccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          278 HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       278 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      -|...|.+++|+|+ ..++|||+.|-.|.||++..+.
T Consensus       528 FHtakI~~~aWsP~-n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  528 FHTAKINCVAWSPN-NKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             eeeeeEEEEEeCCC-ceEEEeccccceEEEEEccChh
Confidence            89999999999999 7899999999999999998754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2e-39  Score=246.59  Aligned_cols=284  Identities=17%  Similarity=0.213  Sum_probs=240.2

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .|..+|++++.+|  +..++++++.      |..-.+|++..+..   .....+|+..|+++.|+.+| .+||+|..+|.
T Consensus        62 ~H~~svFavsl~P--~~~l~aTGGg------DD~AflW~~~~ge~---~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~  129 (399)
T KOG0296|consen   62 KHTDSVFAVSLHP--NNNLVATGGG------DDLAFLWDISTGEF---AGELTGHKDSVTCCSFSHDG-TLLATGDMSGK  129 (399)
T ss_pred             hcCCceEEEEeCC--CCceEEecCC------CceEEEEEccCCcc---eeEecCCCCceEEEEEccCc-eEEEecCCCcc
Confidence            3889999999999  6788888876      88999999998762   23334899999999999998 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      |+||+..++   .....+......+.-+.|+|.+. .|++|+.||.+.+|.+.+....+.+.+|..++++=.|.|+ ++.
T Consensus       130 v~v~~~stg---~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd-GKr  204 (399)
T KOG0296|consen  130 VLVFKVSTG---GEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD-GKR  204 (399)
T ss_pred             EEEEEcccC---ceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC-Cce
Confidence            999999876   55555555667888999999887 9999999999999999998888999999999999999999 899


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccC---------------------------------------------------cc
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAH---------------------------------------------------EF  193 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------------------------------------------~~  193 (317)
                      ++++..||+|++||+.++.++..+...                                                   +.
T Consensus       205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~  284 (399)
T KOG0296|consen  205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE  284 (399)
T ss_pred             EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence            999999999999999988776655310                                                   00


Q ss_pred             ceEEEEecCC--CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121          194 EILACDWNKY--DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       194 ~v~~i~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                      .+.|+.+.|.  .-.+.|+|+-||+|.|||+...+  ++..-.|..+|..+.|-+ .. +|++++.+|.|+.||.++++ 
T Consensus       285 ~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRtG~-  359 (399)
T KOG0296|consen  285 LDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDARTGQ-  359 (399)
T ss_pred             hhhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccccc-
Confidence            1122222221  33468899999999999998765  455567999999999998 44 69999999999999999997 


Q ss_pred             eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +...+.+|...|.+++.+|+ .++++|+|.|+..+||+..
T Consensus       360 l~~~y~GH~~~Il~f~ls~~-~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQ-KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCC-CcEEEEecCCCeEEEEecC
Confidence            77899999999999999999 8999999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-39  Score=266.30  Aligned_cols=287  Identities=21%  Similarity=0.326  Sum_probs=243.8

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ..+|..++|+.. .+-++.+++.      -|.+.||+.+...-   .+...+|...+++++++||| .++++|+.||.|+
T Consensus       307 ~~~I~t~~~N~t-GDWiA~g~~k------lgQLlVweWqsEsY---VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVK  375 (893)
T KOG0291|consen  307 DQKILTVSFNST-GDWIAFGCSK------LGQLLVWEWQSESY---VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVK  375 (893)
T ss_pred             cceeeEEEeccc-CCEEEEcCCc------cceEEEEEeeccce---eeeccccccceeeEEECCCC-cEEEeccCCCcEE
Confidence            367788999885 4566666664      68999999988752   34444789999999999999 5999999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCCCCeE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRHSDVF  165 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l  165 (317)
                      |||...+   -+..++..|.+.|+.+.|+..++ .+++++.||+|+.||+......+++... .-...|++..|. +.++
T Consensus       376 vWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV  450 (893)
T KOG0291|consen  376 VWNTQSG---FCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELV  450 (893)
T ss_pred             EEeccCc---eEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEE
Confidence            9999876   88999999999999999999988 9999999999999999999998888754 345788999998 8888


Q ss_pred             EEEeCCC-eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          166 CSASGDC-TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       166 ~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      ++|+.|. .|++|++++|+.+-.+.+|++||.+++|+| .+..|++++.|.+|++||+-.....+..+. +...+..++|
T Consensus       451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsf  528 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSF  528 (893)
T ss_pred             EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEE
Confidence            8888776 499999999999999999999999999999 999999999999999999987655455555 5668999999


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccccce-------------------eeeeecccceeEeEEEEeccCCeEEEeecCCcE
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVEDAL-------------------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV  305 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  305 (317)
                      .|+|+. |+++..||.|.+||.......                   ...........+.+++++| +..+++||....|
T Consensus       529 rPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD-G~~IlAgG~sn~i  606 (893)
T KOG0291|consen  529 RPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD-GKCILAGGESNSI  606 (893)
T ss_pred             cCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC-CCEEEecCCcccE
Confidence            999995 999999999999998765311                   1111122457899999999 8899999999999


Q ss_pred             EEEecCCC
Q 021121          306 YVWQQGMD  313 (317)
Q Consensus       306 ~~w~~~~~  313 (317)
                      ++|++.++
T Consensus       607 CiY~v~~~  614 (893)
T KOG0291|consen  607 CIYDVPEG  614 (893)
T ss_pred             EEEECchh
Confidence            99999764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.4e-39  Score=238.12  Aligned_cols=248  Identities=21%  Similarity=0.341  Sum_probs=220.9

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.+.|.++.|++|. +.+++++.||.+.|||.-+.   .....+.-...-|..++|+|.++ +++.|+.|+...||++
T Consensus        52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Tt---nK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTT---NKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNKCSIYPL  126 (343)
T ss_pred             cccccceeeeEecCCc-CeEEeeccCCeEEEEEcccc---cceeEEecCceeEEEEEECCCCC-eEEecCcCceeEEEec
Confidence            3899999999999997 69999999999999998765   55666666788999999999998 9999999999999999


Q ss_pred             CCC------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121          137 DRP------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       137 ~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      .+.      +..+.+.+|.+.+.++.|.++  ..|++++.|.+..+||+++++.+..+.+|...|.+++++|.+++.+++
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence            865      455678899999999999975  456799999999999999999999999999999999999989999999


Q ss_pred             EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee--cccceeEeEEE
Q 021121          211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD--HHTEFAVGVDM  288 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~  288 (317)
                      |+-|+..++||+|.+. ..+.+.+|...|++++|.|+|. -+++|++|++.++||++..+++ ..+.  ....+|++++|
T Consensus       205 g~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITSVAF  281 (343)
T ss_pred             cccccceeeeeccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEE-eeeccCcccCCceeEEE
Confidence            9999999999999975 5999999999999999999998 5999999999999999997643 3333  33468999999


Q ss_pred             EeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          289 SVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       289 ~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      |.. +++|.+|..|..+.+||.-...+
T Consensus       282 S~S-GRlLfagy~d~~c~vWDtlk~e~  307 (343)
T KOG0286|consen  282 SKS-GRLLFAGYDDFTCNVWDTLKGER  307 (343)
T ss_pred             ccc-ccEEEeeecCCceeEeeccccce
Confidence            998 89999999999999999765443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.6e-41  Score=261.38  Aligned_cols=243  Identities=25%  Similarity=0.423  Sum_probs=218.4

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      .+.+|..+.|.|+| +.|++|+..|.+.+|+...-   .....++.|..+|.++.|++++. .+++|+.+|.|++|+..-
T Consensus        95 vkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cccceeeEEEcCCC-ceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccch
Confidence            45679999999998 69999999999999997433   44455678999999999999998 999999999999999875


Q ss_pred             CceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          139 PTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       139 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      . .++.+.. |...|.+++|+|. ...|+++++||+|+|||....+....+.+|.-.|.+++|+| ...++++++.|..|
T Consensus       170 n-nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlV  246 (464)
T KOG0284|consen  170 N-NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLV  246 (464)
T ss_pred             h-hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCcee
Confidence            4 3444444 5589999999997 78889999999999999999999999999999999999999 88899999999999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      ++||.+++++ +.++..|+..|..+.|+|++. +|+++|.|..++++|+++-+ -+..+++|...++++.|+|....+|.
T Consensus       247 KlWDprSg~c-l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lft  323 (464)
T KOG0284|consen  247 KLWDPRSGSC-LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFT  323 (464)
T ss_pred             EeecCCCcch-hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhH-HHHHhhcchhhheeecccccccccee
Confidence            9999999875 888899999999999999996 89999999999999999766 45788999999999999999888999


Q ss_pred             EeecCCcEEEEecCC
Q 021121          298 STGWDELVYVWQQGM  312 (317)
Q Consensus       298 s~~~dg~i~~w~~~~  312 (317)
                      +|+.||.|..|.+..
T Consensus       324 sgg~Dgsvvh~~v~~  338 (464)
T KOG0284|consen  324 SGGSDGSVVHWVVGL  338 (464)
T ss_pred             eccCCCceEEEeccc
Confidence            999999999999983

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-40  Score=269.82  Aligned_cols=289  Identities=23%  Similarity=0.330  Sum_probs=251.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      .++.|.+|+|--.++..+++++.       .+.+++|++....  .+  ...+|.+.|.++....+| -+|++|+.|.++
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~~~--c~--ii~GH~e~vlSL~~~~~g-~llat~sKD~sv  389 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPTSY--CQ--IIPGHTEAVLSLDVWSSG-DLLATGSKDKSV  389 (775)
T ss_pred             CchhheeeeecCCccceEEEEeC-------CCceEEEecCCCc--eE--EEeCchhheeeeeecccC-cEEEEecCCceE
Confidence            45778899987666778888877       7799999887765  22  334899999999955566 599999999999


Q ss_pred             EEEEeCCC-CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-----eE----EeeccccceEEE
Q 021121           86 KIYDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VR----TFKEHAYCVYNA  155 (317)
Q Consensus        86 ~v~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~----~~~~~~~~v~~~  155 (317)
                      ++|.+++. ....++....+|...|.+++++..+..+|+++|.|+++++|++...+.     ..    ....|...|+++
T Consensus       390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V  469 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV  469 (775)
T ss_pred             EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence            99999543 223455667799999999999988888999999999999999976211     11    234689999999


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +.+|+ ..+++||+.|.+.++|++.+......+.+|...+.++.|+| ..+.+++++.|++|+||.+.+.. ++.++.+|
T Consensus       470 aia~n-dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS-ClkT~eGH  546 (775)
T KOG0319|consen  470 AIAPN-DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS-CLKTFEGH  546 (775)
T ss_pred             EecCC-CceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccce-eeeeecCc
Confidence            99999 89999999999999999999999999999999999999999 89999999999999999999977 59999999


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ...|..+.|-.+++ .|++++.||.|++|++.+.+ +...++.|+..|.+++.+|. ..+++||+.||.|.+|.=.+
T Consensus       547 ~~aVlra~F~~~~~-qliS~~adGliKlWnikt~e-C~~tlD~H~DrvWaL~~~~~-~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  547 TSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNE-CEMTLDAHNDRVWALSVSPL-LDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cceeEeeeeeeCCc-EEEeccCCCcEEEEeccchh-hhhhhhhccceeEEEeecCc-cceeEecCCCeEEEEeecCc
Confidence            99999999999999 59999999999999999987 67899999999999999998 77999999999999997544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-39  Score=264.06  Aligned_cols=286  Identities=23%  Similarity=0.329  Sum_probs=246.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +...|.++.|+|. ..-++++..       +|.|.||+.++..    .+..+ -...+|++..|-+.- +.+++|+.|..
T Consensus        12 rSdRVKsVd~HPt-ePw~la~Ly-------nG~V~IWnyetqt----mVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~   78 (794)
T KOG0276|consen   12 RSDRVKSVDFHPT-EPWILAALY-------NGDVQIWNYETQT----MVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQ   78 (794)
T ss_pred             cCCceeeeecCCC-CceEEEeee-------cCeeEEEecccce----eeeeeeecccchhhheeeecc-ceEEEecCCce
Confidence            6788999999997 566666666       8999999998754    22323 245689999999875 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      |+||+..+.   +.+..+..|..-|.+++.+|..+ ++++++.|-.|++||.+.. .+.+.+.+|+.-|.+++|+|.+.+
T Consensus        79 IrVfnynt~---ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n  154 (794)
T KOG0276|consen   79 IRVFNYNTG---EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN  154 (794)
T ss_pred             EEEEecccc---eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence            999999877   88999999999999999999998 9999999999999999876 677889999999999999999999


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      .+++++-|++|++|.+.+..+..++.+|...|+|+.+-+. +..+|++|+.|.+|+|||.++.. +++++.+|...|..+
T Consensus       155 tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nvs~v  233 (794)
T KOG0276|consen  155 TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNVSFV  233 (794)
T ss_pred             ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccceEE
Confidence            9999999999999999999999999999999999999872 34699999999999999999855 699999999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .|+|.-+ ++++|++||+++||+..+-+ +...+.-.-+.+.+++-.+. ++.++.|.+.|.| +.++..+
T Consensus       234 ~fhp~lp-iiisgsEDGTvriWhs~Ty~-lE~tLn~gleRvW~I~~~k~-~~~i~vG~Deg~i-~v~lgre  300 (794)
T KOG0276|consen  234 FFHPELP-IIISGSEDGTVRIWNSKTYK-LEKTLNYGLERVWCIAAHKG-DGKIAVGFDEGSV-TVKLGRE  300 (794)
T ss_pred             EecCCCc-EEEEecCCccEEEecCccee-hhhhhhcCCceEEEEeecCC-CCeEEEeccCCcE-EEEccCC
Confidence            9999999 89999999999999987765 44455555677999988886 5677777766655 4455443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-38  Score=252.85  Aligned_cols=290  Identities=18%  Similarity=0.309  Sum_probs=236.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee-eecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-AFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |..-|.|+.|+|+ ..+|+.+++       ||+|.+||-.+++. ...+. ...|.+.|.+++|+||+ ..+++++.|.+
T Consensus       189 HskFV~~VRysPD-G~~Fat~gs-------Dgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt  258 (603)
T KOG0318|consen  189 HSKFVNCVRYSPD-GSRFATAGS-------DGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKT  258 (603)
T ss_pred             cccceeeEEECCC-CCeEEEecC-------CccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCC-ceEEEecCCce
Confidence            6667899999995 444444444       99999999887763 22222 33699999999999998 69999999999


Q ss_pred             EEEEEeCCC----------------------------------------CCCCCceeeccCCcceEEEEEecCCCCEEEE
Q 021121           85 VKIYDTALP----------------------------------------PTANPIRSLHEHTREVHSADYNPTRRDSFIT  124 (317)
Q Consensus        85 i~v~~~~~~----------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  124 (317)
                      ++|||+...                                        ....++..+.+|...|+++..+|++. +|++
T Consensus       259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~S  337 (603)
T KOG0318|consen  259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYS  337 (603)
T ss_pred             EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEe
Confidence            999998765                                        11224455678999999999999997 9999


Q ss_pred             EcCCCEEEEEEcCCCcee-----------EEe------------------------------------------------
Q 021121          125 SSWDDTVKLWTVDRPTSV-----------RTF------------------------------------------------  145 (317)
Q Consensus       125 ~~~dg~v~iwd~~~~~~~-----------~~~------------------------------------------------  145 (317)
                      |+.||.|.-|+..++..-           ..+                                                
T Consensus       338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~  417 (603)
T KOG0318|consen  338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG  417 (603)
T ss_pred             eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence            999999999998654211           000                                                


Q ss_pred             --------------ec--------cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEec
Q 021121          146 --------------KE--------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWN  201 (317)
Q Consensus       146 --------------~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~  201 (317)
                                    +.        ......+++++|+ +..+++|+.||.|++|.+...+.  ......|..++++++++
T Consensus       418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                          00        0113467788888 89999999999999999987543  33456799999999999


Q ss_pred             CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc
Q 021121          202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE  281 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  281 (317)
                      | ++.+|+++...+.+.+||..+.+.......-|...|.+++|+|+.. ++|+|+.|..|.||++......+.....|..
T Consensus       497 p-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~  574 (603)
T KOG0318|consen  497 P-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLG  574 (603)
T ss_pred             C-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhheEecccccc
Confidence            9 9999999999999999999987654445556999999999999998 7999999999999999988766777788998


Q ss_pred             eeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          282 FAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      .|+.+.|-.  +..+++.|.|..|++|++.
T Consensus       575 gVn~v~wld--e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  575 GVNSVAWLD--ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             CceeEEEec--CceEEeccCcceeEEeccc
Confidence            999999986  5799999999999999975

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-40  Score=238.73  Aligned_cols=252  Identities=21%  Similarity=0.453  Sum_probs=225.7

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      .|+..+.++.++|++..++.++++.+       ||.+++||+.....++...+  +|+..|.++.|++.....+++++.|
T Consensus        56 s~d~~D~LfdV~Wse~~e~~~~~a~G-------DGSLrl~d~~~~s~Pi~~~k--EH~~EV~Svdwn~~~r~~~ltsSWD  126 (311)
T KOG0277|consen   56 SYDTEDGLFDVAWSENHENQVIAASG-------DGSLRLFDLTMPSKPIHKFK--EHKREVYSVDWNTVRRRIFLTSSWD  126 (311)
T ss_pred             eeecccceeEeeecCCCcceEEEEec-------CceEEEeccCCCCcchhHHH--hhhhheEEeccccccceeEEeeccC
Confidence            46778899999999988888888887       99999999876654444433  7999999999999877889999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ++|++|+...+   ..+.++.+|...|....|+|..++++++++.|+.+++||++.......+..|..++.++.|+..+.
T Consensus       127 ~TiKLW~~~r~---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  127 GTIKLWDPNRP---NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH  203 (311)
T ss_pred             CceEeecCCCC---cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence            99999998776   788889999999999999999888999999999999999987655556889999999999999889


Q ss_pred             CeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          163 DVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ++++||+.|+.|+.||+++. .++..+.+|.-.|+.+.|+|....+|++++.|-++++||.......+.+..-|..-+..
T Consensus       204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g  283 (311)
T KOG0277|consen  204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG  283 (311)
T ss_pred             cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence            99999999999999999986 46778889999999999999889999999999999999998777677788889999999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEec
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      +.|++....++|+.+.|..++||+.
T Consensus       284 ~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  284 LDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccccCceeeecccccceeeecc
Confidence            9999987778999999999999984

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.6e-39  Score=238.76  Aligned_cols=249  Identities=21%  Similarity=0.355  Sum_probs=220.1

Q ss_pred             eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ...+|++.|+.+.|+|+| .+|++|+.|..|.+|++...  .+....+++|++.|..+.|.++++ .+++++.|.+|+.|
T Consensus        42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGS-HILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCC-EEEEecCCceEEEE
Confidence            344899999999999988 69999999999999997633  355667789999999999999998 99999999999999


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      |+++++.+++++.|...++++.-+..+..++.+++.||++++||+|+.+.++.+. ...+++++.|.. .+..+.+|+-|
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~s~qv~sggId  195 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-TSDQVISGGID  195 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc-cccceeecccc
Confidence            9999999999999999999999666677889999999999999999988888775 567899999998 88899999999


Q ss_pred             CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc---cceeeeeeccc----ceeEeEE
Q 021121          215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---DALVGRYDHHT----EFAVGVD  287 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~----~~v~~~~  287 (317)
                      +.|++||++... ....+.+|..+|+.+..+|+|. ++.+-+.|.++++||++.-   ++++..+.+|.    .....++
T Consensus       196 n~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  196 NDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             CceeeeccccCc-ceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999866 4889999999999999999999 6999999999999998753   34456666653    3456789


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |+|+ +..+.+|+.|..+++||...
T Consensus       274 wsp~-~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  274 WSPN-GTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             ccCC-CCccccccccceEEEeeccc
Confidence            9998 88999999999999999865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-38  Score=260.19  Aligned_cols=284  Identities=20%  Similarity=0.330  Sum_probs=244.7

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEEcC-Ce
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAVAD-GS   84 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-g~   84 (317)
                      +..+++.+|+|  ...+++.+-.      +|...+|++..-.    .+.... ...+|..++|+..|+ .||.|+.. |.
T Consensus       265 ~~kvtaa~fH~--~t~~lvvgFs------sG~f~LyelP~f~----lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQ  331 (893)
T KOG0291|consen  265 SSKVTAAAFHK--GTNLLVVGFS------SGEFGLYELPDFN----LIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQ  331 (893)
T ss_pred             ccceeeeeccC--CceEEEEEec------CCeeEEEecCCce----EEEEeecccceeeEEEecccCC-EEEEcCCccce
Confidence            36899999999  6666666664      8999999998654    333333 336799999999985 77776654 89


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      +-||+....   .-+...++|...+++++++|||+ ++++|+.||.|+|||..++-+..++..|++.|+.+.|+.. ++.
T Consensus       332 LlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-g~~  406 (893)
T KOG0291|consen  332 LLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-GNV  406 (893)
T ss_pred             EEEEEeecc---ceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec-CCE
Confidence            999999865   66667789999999999999998 9999999999999999999999999999999999999998 899


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccC-ccceEEEEecCCCCcEEEEEecCC-cEEEEEccCCCccEEEEecCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAH-EFEILACDWNKYDDCLIASASVDK-SIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +++.+-||+|+.||+...+..+++... .....|++..| .|.++.+|+.|. .|.+|++++++. +..+.+|.++|.++
T Consensus       407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l  484 (893)
T KOG0291|consen  407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGL  484 (893)
T ss_pred             EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceee
Confidence            999999999999999998888888643 34578999999 899999998886 599999999874 88999999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +|+|.+. +|++++.|.+|++||+-.....+..++ +...+..++|+|+ ++.|+++..||.|.+||....
T Consensus       485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd-G~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD-GKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             EEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCC-CCeEEEEEecceEEEEEhhhc
Confidence            9999999 799999999999999987754444444 4567999999999 889999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.1e-39  Score=244.18  Aligned_cols=288  Identities=25%  Similarity=0.401  Sum_probs=243.4

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC--CCeEEEEE
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH--DSLLIAAV   80 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~   80 (317)
                      .|.|++-|.++.-.+   +.++.+++       ||.+++||.....    .....+|.++|.+++|...+  ...+++++
T Consensus       101 ~~~hdDWVSsv~~~~---~~IltgsY-------Dg~~riWd~~Gk~----~~~~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGAS---KWILTGSY-------DGTSRIWDLKGKS----IKTIVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             cccchhhhhhhcccC---ceEEEeec-------CCeeEEEecCCce----EEEEecCCcceeeeEEEecCCccceEEEec
Confidence            345666777777665   67777777       9999999987653    34445899999998886433  23699999


Q ss_pred             cCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---------------------
Q 021121           81 ADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR---------------------  138 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------------------  138 (317)
                      .|.++++|.++.+... +.+....+|...|.++...+++. .+++|+.|..|.+|+.++                     
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~  245 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK  245 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence            9999999999876322 23333459999999999999998 999999999999999321                     


Q ss_pred             ----CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121          139 ----PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       139 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                          +.++..+.+|..+|.++.|++  ...+++++.|.+|+.||+.++.....+.+ ...++++..+| ..++|++|+.|
T Consensus       246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssd  321 (423)
T KOG0313|consen  246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSD  321 (423)
T ss_pred             cccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCC
Confidence                134556789999999999997  56788999999999999999998888774 55789999999 99999999999


Q ss_pred             CcEEEEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          215 KSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       215 ~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      ..|++||.|++.  .....+.+|+..|.++.|+|...++|++|+.|+++++||+++.+..+..+.+|...|.++.|..  
T Consensus       322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--  399 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--  399 (423)
T ss_pred             CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--
Confidence            999999999864  3456788999999999999999999999999999999999999878889999999999999996  


Q ss_pred             CCeEEEeecCCcEEEEecC
Q 021121          293 EGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~  311 (317)
                      +..+++||.|.+|+++.-.
T Consensus       400 ~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  400 GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CceEEeccCcceEEEeccc
Confidence            6799999999999998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-39  Score=247.58  Aligned_cols=244  Identities=22%  Similarity=0.378  Sum_probs=225.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      +|.+.|.|+++.|-+ ..+++|+.|++++|||+.++   +...++.+|...|..+++++..+ ++++++.|+.|+.||++
T Consensus       149 gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hccceEEEEeeCCCc-eeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCc-eEEEecCCCeeEEEech
Confidence            688999999999975 69999999999999999987   78888999999999999999988 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      ..+.++.+.+|-+.|.+++.+|. -..|++|+.|.++++||+|+...+..+.+|..+|.++.+.| ....+++|+.|++|
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tv  301 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTV  301 (460)
T ss_pred             hhhhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceE
Confidence            99999999999999999999998 88999999999999999999999999999999999999999 67789999999999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      ++||++.++. ...+..|+..|++++.+|... ++++++.|. |+-|++..++ .+..+.+|...|++++...|  .+++
T Consensus       302 rlWDl~agkt-~~tlt~hkksvral~lhP~e~-~fASas~dn-ik~w~~p~g~-f~~nlsgh~~iintl~~nsD--~v~~  375 (460)
T KOG0285|consen  302 RLWDLRAGKT-MITLTHHKKSVRALCLHPKEN-LFASASPDN-IKQWKLPEGE-FLQNLSGHNAIINTLSVNSD--GVLV  375 (460)
T ss_pred             EEeeeccCce-eEeeecccceeeEEecCCchh-hhhccCCcc-ceeccCCccc-hhhccccccceeeeeeeccC--ceEE
Confidence            9999999875 777888999999999999886 788888775 9999999887 55669999999999998874  6999


Q ss_pred             EeecCCcEEEEecCCCC
Q 021121          298 STGWDELVYVWQQGMDP  314 (317)
Q Consensus       298 s~~~dg~i~~w~~~~~~  314 (317)
                      +|++.|.+.+||...++
T Consensus       376 ~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  376 SGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             EcCCceEEEEEecCcCc
Confidence            99999999999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2e-40  Score=260.51  Aligned_cols=286  Identities=21%  Similarity=0.352  Sum_probs=243.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.++.|.|. .+.|+++++.      |+.|+||++-.....++.  ..+|..+|.+++|+++| ..+++++.|+.+
T Consensus       213 H~kgvsai~~fp~-~~hLlLS~gm------D~~vklW~vy~~~~~lrt--f~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l  282 (503)
T KOG0282|consen  213 HTKGVSAIQWFPK-KGHLLLSGGM------DGLVKLWNVYDDRRCLRT--FKGHRKPVRDASFNNCG-TSFLSASFDRFL  282 (503)
T ss_pred             Cccccchhhhccc-eeeEEEecCC------CceEEEEEEecCcceehh--hhcchhhhhhhhccccC-Ceeeeeecceee
Confidence            7788999999996 5677777776      999999999875533332  23899999999999998 689999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||++++   ++...+.. ...++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+. +..+
T Consensus       283 KlwDtETG---~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~-g~rF  357 (503)
T KOG0282|consen  283 KLWDTETG---QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE-GRRF  357 (503)
T ss_pred             eeeccccc---eEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-CceE
Confidence            99999987   66666653 5678999999999779999999999999999999999999999999999999998 8999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--cEEEEecCC--Ccee
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHG--YAVR  240 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~--~~v~  240 (317)
                      ++.++|+.+++|+.+...++..+. .+.....++..+| .+++++.-+.|+.|.+|.+...-.  ....+.+|.  +.-.
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence            999999999999999876655433 2334467899999 999999999999999998764321  233456664  3446


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      .+.|||||+ +|++|+.||.+.+||.++.+ ++..+..|.+++..+.|+|.....+|+++.||.|++|+
T Consensus       437 ~v~fSpDG~-~l~SGdsdG~v~~wdwkt~k-l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  437 QVDFSPDGR-TLCSGDSDGKVNFWDWKTTK-LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEcCCCC-eEEeecCCccEEEeechhhh-hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            789999999 79999999999999999987 77899999999999999999788999999999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-39  Score=252.82  Aligned_cols=260  Identities=25%  Similarity=0.448  Sum_probs=230.3

Q ss_pred             eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-------CCceeeccCCcceEEEEEecCCCCEEEE
Q 021121           52 TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-------NPIRSLHEHTREVHSADYNPTRRDSFIT  124 (317)
Q Consensus        52 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  124 (317)
                      +....+.|.+.|+.+.+-|+.+.++++++..+.|.|||.......       .+-..+.+|...-.+++|++.....+++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            344456799999999999999999999999999999998764222       2233678899888999999988879999


Q ss_pred             EcCCCEEEEEEcCCCc-------eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC--CCCceeeeccCccce
Q 021121          125 SSWDDTVKLWTVDRPT-------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR--EMGSTMIIPAHEFEI  195 (317)
Q Consensus       125 ~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v  195 (317)
                      ++.|+.|++||+....       ....+.+|...|..++|++.+..+|++++.|+.+.|||+|  +.++.....+|..++
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            9999999999997643       3456778999999999999989999999999999999999  556677788999999


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----  270 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----  270 (317)
                      +|++|+|.++.+||+|+.|++|++||+|+...++..+.+|...|.++.|+|....+|++++.|+.+.|||+..-.     
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986532     


Q ss_pred             --------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          271 --------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       271 --------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                              +++....+|...|..+.|+|.....++|.+.|+.+.||++.
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                    34567789999999999999978899999999999999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-39  Score=248.74  Aligned_cols=292  Identities=17%  Similarity=0.221  Sum_probs=239.5

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +|.+.|.-+.||+  +|+++++++.      |.+..+|++.............+|..+|..+.|+||+ ++|++++.+..
T Consensus       222 ~htdEVWfl~FS~--nGkyLAsaSk------D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~  292 (519)
T KOG0293|consen  222 DHTDEVWFLQFSH--NGKYLASASK------DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEV  292 (519)
T ss_pred             hCCCcEEEEEEcC--CCeeEeeccC------CceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHh
Confidence            4788999999999  7889988887      8899999998766422233444899999999999997 68888888889


Q ss_pred             EEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCCC
Q 021121           85 VKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRHS  162 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~  162 (317)
                      +.+||+.++   .....+. ++.-.+.+++|.|||. .+++|+.|+.+..||++.. .....++. ...|.+++..+| +
T Consensus       293 ~~lwDv~tg---d~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~D-g  366 (519)
T KOG0293|consen  293 LSLWDVDTG---DLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYD-G  366 (519)
T ss_pred             eeeccCCcc---hhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCC-C
Confidence            999999987   4443333 3568899999999998 8999999999999999754 44444433 246999999999 7


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc--ee
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA--VR  240 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--v~  240 (317)
                      +.+++.+.|..|++|+.++......+. ...+|+++..+. +++++++.-.+..+++||++... .+..+.+|...  +-
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENK-LVRKYFGHKQGHFII  443 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhh-HHHHhhcccccceEE
Confidence            888888899999999988765544443 567899999998 99999999999999999999654 46677777643  33


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      .-+|--....++++|++|+.|+||+..+++ ++..+.+|...|++++|+|.+..++|++|+||+||||......+
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~r  517 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNNR  517 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCc-eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcccc
Confidence            445655444589999999999999998886 78899999999999999999888999999999999999876544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.8e-40  Score=251.41  Aligned_cols=274  Identities=21%  Similarity=0.406  Sum_probs=234.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ....|+|+++..   ++ ++++..      |.+|+|||.+...   -.....+|.+.|.|+.|..   ..+++|+.|.+|
T Consensus       196 ~skgVYClQYDD---~k-iVSGlr------DnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd~---rviisGSSDsTv  259 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EK-IVSGLR------DNTIKIWDKNSLE---CLKILTGHTGSVLCLQYDE---RVIVSGSSDSTV  259 (499)
T ss_pred             cCCceEEEEecc---hh-hhcccc------cCceEEeccccHH---HHHhhhcCCCcEEeeeccc---eEEEecCCCceE
Confidence            345788887754   33 455554      8999999988654   1233448999999999984   599999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc---eeEEeeccccceEEEEEecCCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT---SVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ++||++++   +++.++..|...|..+.|+.   .++++++.|.++.+||+....   +.+.+.+|...|+.+.|+   .
T Consensus       260 rvWDv~tg---e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~  330 (499)
T KOG0281|consen  260 RVWDVNTG---EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---D  330 (499)
T ss_pred             EEEeccCC---chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---c
Confidence            99999987   89999999999999999984   399999999999999998764   344567899999999997   5


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +++++++.|.+|++|++.+.+.++++.+|...|-|+.+   .++++++|+.|.+|++||+..+. ++..+++|+.-|.++
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRci  406 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCI  406 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccH-HHHHHhchHHhhhhe
Confidence            69999999999999999999999999999999988876   67899999999999999999987 488999999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccc--------eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDA--------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .|.  .+ -+++|+.||+|++||+.....        ++..+..|.+.|..+.|.   ...+++++.|.+|.+||+...+
T Consensus       407 RFd--~k-rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  407 RFD--NK-RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             eec--Cc-eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEEcCCCC
Confidence            996  34 499999999999999987642        455677899999999997   5689999999999999997654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=251.06  Aligned_cols=286  Identities=21%  Similarity=0.290  Sum_probs=244.8

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +....|.+++|+|..+..++++++.        ++.||+...... .+.+.  .....+.++.|..|| .+|++|...|.
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S~--------rvqly~~~~~~~-~k~~s--rFk~~v~s~~fR~DG-~LlaaGD~sG~   91 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSSV--------RVQLYSSVTRSV-RKTFS--RFKDVVYSVDFRSDG-RLLAAGDESGH   91 (487)
T ss_pred             cccCcceeEecCCCCCCceEEeccc--------EEEEEecchhhh-hhhHH--hhccceeEEEeecCC-eEEEccCCcCc
Confidence            4567899999999989999999875        899999877652 22222  456789999999999 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      |+|||+++.   ..+..+.+|..++..+.|+|.+...+++|+.|+.+++||+.+......+.+|++.|.|.+|+|.++.+
T Consensus        92 V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   92 VKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             EEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence            999996543   56778899999999999999998899999999999999999988766889999999999999998889


Q ss_pred             EEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE
Q 021121          165 FCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK  243 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~  243 (317)
                      +++|+.||.|++||++.. ..+..+. |..+|.++.+-| .+.++++++ ...+++||+-++.+.+.....|...|+|++
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~  245 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLR  245 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEE
Confidence            999999999999999987 4455554 899999999999 889999987 467999999988776777667999999999


Q ss_pred             ecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          244 FSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +..++. .|++|+-|+.+++||+.+-+ .+..+. ..++|.+++.+|+ ++.++.|..+|.+.+=+...
T Consensus       246 l~s~~~-rLlS~sLD~~VKVfd~t~~K-vv~s~~-~~~pvLsiavs~d-d~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  246 LASDST-RLLSGSLDRHVKVFDTTNYK-VVHSWK-YPGPVLSIAVSPD-DQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             eecCCc-eEeecccccceEEEEccceE-EEEeee-cccceeeEEecCC-CceEEEecccceeeeehhhc
Confidence            999987 59999999999999977665 555554 4688999999998 78999999999887654443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-38  Score=261.02  Aligned_cols=293  Identities=28%  Similarity=0.391  Sum_probs=243.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |++.|.++.|+|+....++++++.      |+.+++||+.........+  ..|.+.|++++|++++ ..+++++.|..+
T Consensus       146 ~gGvVssl~F~~~~~~~lL~sg~~------D~~v~vwnl~~~~tcl~~~--~~H~S~vtsL~~~~d~-~~~ls~~RDkvi  216 (775)
T KOG0319|consen  146 HGGVVSSLLFHPHWNRWLLASGAT------DGTVRVWNLNDKRTCLHTM--ILHKSAVTSLAFSEDS-LELLSVGRDKVI  216 (775)
T ss_pred             CCceEEEEEeCCccchhheeecCC------CceEEEEEcccCchHHHHH--HhhhhheeeeeeccCC-ceEEEeccCcEE
Confidence            688999999999877777777776      9999999999765322222  2688899999999997 578888888888


Q ss_pred             EEEEeCCC------------------------------------------------------------------------
Q 021121           86 KIYDTALP------------------------------------------------------------------------   93 (317)
Q Consensus        86 ~v~~~~~~------------------------------------------------------------------------   93 (317)
                      .+||+..-                                                                        
T Consensus       217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~  296 (775)
T KOG0319|consen  217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL  296 (775)
T ss_pred             EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence            88887432                                                                        


Q ss_pred             ----------------------------------------------CCC----------CCceeeccCCcceEEEEEecC
Q 021121           94 ----------------------------------------------PTA----------NPIRSLHEHTREVHSADYNPT  117 (317)
Q Consensus        94 ----------------------------------------------~~~----------~~~~~~~~~~~~v~~~~~~~~  117 (317)
                                                                    .+.          .....+.+|...|.++....+
T Consensus       297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~  376 (775)
T KOG0319|consen  297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS  376 (775)
T ss_pred             EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence                                                          000          011234578888888885555


Q ss_pred             CCCEEEEEcCCCEEEEEEcCCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce-----e--
Q 021121          118 RRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST-----M--  186 (317)
Q Consensus       118 ~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~--  186 (317)
                      |- +|++|+.|.++++|.++++.    ++....+|.+.|.+++++..+...|++++.|+++++|++...+..     .  
T Consensus       377 g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~  455 (775)
T KOG0319|consen  377 GD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC  455 (775)
T ss_pred             Cc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence            64 99999999999999885442    345567899999999999888889999999999999999863211     1  


Q ss_pred             --eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121          187 --IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       187 --~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vw  264 (317)
                        ....|+..|++++++| +..+++||+.|++.++|++++.+ ....+.+|...|.++.|+|..+ +++|+|.|++|+||
T Consensus       456 ~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIW  532 (775)
T ss_pred             hHHHHhhcccccceEecC-CCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc-eeEeccCCceEEEE
Confidence              2346899999999999 99999999999999999999655 5888999999999999999988 89999999999999


Q ss_pred             ecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          265 DFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       265 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+.+.. ++.++.+|...|..+.|-.+ +..|+|++.||.+++|++.+.
T Consensus       533 ~is~fS-ClkT~eGH~~aVlra~F~~~-~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  533 SISTFS-CLKTFEGHTSAVLRASFIRN-GKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             Eeccce-eeeeecCccceeEeeeeeeC-CcEEEeccCCCcEEEEeccch
Confidence            999987 78999999999999999998 889999999999999999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-38  Score=241.71  Aligned_cols=246  Identities=25%  Similarity=0.352  Sum_probs=226.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ++..+|+.+-|+|+- .++++++.|++|++||..++   +....+++|...+.++.|+..|+ ++++++.|-.+++||.+
T Consensus       106 g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFD  180 (406)
T ss_pred             ccccceeeeeeccCc-eEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCcc-EEEecCCccchhheeHH
Confidence            678899999999986 68999999999999999887   67888999999999999999998 99999999999999998


Q ss_pred             C-CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          138 R-PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       138 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      + .++++.+.+|+..|.++.|-|. ++++++++.|.+|+.|++.++-++.++.+|...+..++.+. ++.++++++.|.+
T Consensus       181 ~~~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqt  258 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCce
Confidence            7 4677888899999999999999 79999999999999999999999999999999999999998 9999999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCC--------------CCeeEEeeecCCeEEEEecccccceeeeeecccce
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH--------------RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF  282 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  282 (317)
                      +++|-+.+.+ +...+..|+.+|-+++|.|.              +..++.+++.|++|++||+.++. ++.++.+|...
T Consensus       259 l~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnw  336 (406)
T KOG0295|consen  259 LRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNW  336 (406)
T ss_pred             EEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccce
Confidence            9999999865 47788899999999999873              22389999999999999999997 67899999999


Q ss_pred             eEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          283 AVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       283 v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |.+++|+|. |++|+++.+|+++++||+...
T Consensus       337 Vr~~af~p~-Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  337 VRGVAFSPG-GKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             eeeeEEcCC-CeEEEEEecCCcEEEEEeccc
Confidence            999999998 899999999999999999764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-38  Score=262.78  Aligned_cols=291  Identities=19%  Similarity=0.306  Sum_probs=243.6

Q ss_pred             cee-cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            3 VFK-TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         3 ~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      .|+ ....|..++|+|. ..-++++--       +|.|++||..-.. .+..  ..+|.++|+.++|+|+.+ ++++|+.
T Consensus         4 kfEskSsRvKglsFHP~-rPwILtslH-------sG~IQlWDYRM~t-li~r--FdeHdGpVRgv~FH~~qp-lFVSGGD   71 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPK-RPWILTSLH-------SGVIQLWDYRMGT-LIDR--FDEHDGPVRGVDFHPTQP-LFVSGGD   71 (1202)
T ss_pred             hhhcccccccceecCCC-CCEEEEeec-------Cceeeeehhhhhh-HHhh--hhccCCccceeeecCCCC-eEEecCC
Confidence            355 3468899999994 344444443       8999999987543 1111  227999999999999985 9999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      |-.|+||+.+..   +++.++.+|-..|..+.|++.-+ .++++|.|.+|+||+..+++++..+.+|...|.|..|+|. 
T Consensus        72 DykIkVWnYk~r---rclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt-  146 (1202)
T KOG0292|consen   72 DYKIKVWNYKTR---RCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT-  146 (1202)
T ss_pred             ccEEEEEecccc---eehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-
Confidence            999999999876   88899999999999999999988 9999999999999999999999999999999999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCC-----------------------------ceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          162 SDVFCSASGDCTLRIWDVREMG-----------------------------STMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      ..++++++-|.+|++||+...+                             ....+.+|...|+-++|+| .-.++++|+
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~  225 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGA  225 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecC
Confidence            8899999999999999985211                             1123568999999999999 889999999


Q ss_pred             cCCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          213 VDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       213 ~d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .|..|++|.+...+ -.+.+..+|...|.++.|+|... ++++.++|++|+|||+.... .++.++...+.-..++.+|.
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt-~v~tfrrendRFW~laahP~  303 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT-SVQTFRRENDRFWILAAHPE  303 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc-ceeeeeccCCeEEEEEecCC
Confidence            99999999987543 12456789999999999999887 89999999999999998766 56777777788899999997


Q ss_pred             cCCeEEEeecCCcEEEEecCCCCC
Q 021121          292 VEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                       .+++++|- |+-+.+|.++.++.
T Consensus       304 -lNLfAAgH-DsGm~VFkleRErp  325 (1202)
T KOG0292|consen  304 -LNLFAAGH-DSGMIVFKLERERP  325 (1202)
T ss_pred             -cceeeeec-CCceEEEEEcccCc
Confidence             66666664 55577999986543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.1e-39  Score=245.55  Aligned_cols=232  Identities=24%  Similarity=0.465  Sum_probs=207.4

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ...+|+|+.+..   ..+++|..|.+|+|||...-   .+...+.+|.+.|.|+.|..  + .+++|+.|.+|++||+++
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd~--r-viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeeccc--e-EEEecCCCceEEEEeccC
Confidence            456899999873   37999999999999998755   78888999999999999973  3 899999999999999999


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---eeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---TMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      ++++.++-.|...|..+.|+   ..++++++.|.++.+||+.....   .+.+.+|...|+.+.|+.   +++++++.|.
T Consensus       267 ge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDR  340 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDR  340 (499)
T ss_pred             CchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCc
Confidence            99999999999999999998   67899999999999999987643   345678999999999864   5999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      +|++|++.+.+ .+.++.+|...|.|+.+.  ++ ++++|+.|.+|++||+..+. +++.+++|+.-|.++.|.   .+.
T Consensus       341 TikvW~~st~e-fvRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRciRFd---~kr  412 (499)
T KOG0281|consen  341 TIKVWSTSTCE-FVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFD---NKR  412 (499)
T ss_pred             eEEEEecccee-eehhhhcccccceehhcc--Ce-EEEecCCCceEEEEeccccH-HHHHHhchHHhhhheeec---Cce
Confidence            99999999976 489999999999998874  55 89999999999999999987 678999999999999998   678


Q ss_pred             EEEeecCCcEEEEecCCC
Q 021121          296 LASTGWDELVYVWQQGMD  313 (317)
Q Consensus       296 l~s~~~dg~i~~w~~~~~  313 (317)
                      +++|+.||+|++||+...
T Consensus       413 IVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             eeeccccceEEEEecccc
Confidence            999999999999999763

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-37  Score=252.59  Aligned_cols=246  Identities=22%  Similarity=0.372  Sum_probs=225.9

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .+...|.++.|+|..+ .++++-.+|.|.||+.++.   ..++.++-...+|.+..|-+..+ .+++|+.|..|++|+.+
T Consensus        11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             ccCCceeeeecCCCCc-eEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecc
Confidence            4778899999999975 8888899999999999876   77888888889999999988766 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      +++.++.+.+|.+-|.+++.+|. ..+++++++|-.|++||.+.. .+.+.+.+|...|.+++|+|.+.+.+++++-|++
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             cceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            99999999999999999999999 788889999999999999876 6778899999999999999999999999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCC-CeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR-RNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      |+||.+.+.. +..++.+|...|+++.|-+.| +-+|++|+.|.+|+|||.++.. +++++.+|...|..+.|+|. -.+
T Consensus       165 VKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nvs~v~fhp~-lpi  241 (794)
T KOG0276|consen  165 VKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNVSFVFFHPE-LPI  241 (794)
T ss_pred             EEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccceEEEecCC-CcE
Confidence            9999999865 688999999999999998865 2279999999999999999876 77999999999999999997 679


Q ss_pred             EEEeecCCcEEEEecCC
Q 021121          296 LASTGWDELVYVWQQGM  312 (317)
Q Consensus       296 l~s~~~dg~i~~w~~~~  312 (317)
                      ++||+.||++|||+-.+
T Consensus       242 iisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEEecCCccEEEecCcc
Confidence            99999999999999765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.9e-37  Score=258.86  Aligned_cols=247  Identities=30%  Similarity=0.488  Sum_probs=215.7

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc-C
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-D  137 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-~  137 (317)
                      +...|.++.|+++| ..+++++.++.+++|+...... .....+.+|...|.+++|+|++. ++++++.|++|++||+ .
T Consensus       158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccC
Confidence            36789999999999 4799999999999999965421 25666688999999999999998 9999999999999999 5


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      .+..++.+++|...|++++|+|+ ++++++|+.|++|++||++++++...+.+|..+|.+++|++ ++++|++++.|+.|
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i  312 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTI  312 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccE
Confidence            55889999999999999999999 59999999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEEccCCCc-cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce---eEeEEEEec
Q 021121          218 KIWDVRNYRV-PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF---AVGVDMSVL  291 (317)
Q Consensus       218 ~v~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---v~~~~~~~~  291 (317)
                      ++||+.++.. +...+..+..  ++++++|+|++. +++++..|+.+++||+.... ....+.+|...   +.+...++.
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCCc-ceeeecccCCcceeEecccccCC
Confidence            9999998763 2455555554  499999999999 69999999999999999887 55667777664   344444555


Q ss_pred             cCCeEEEeecCCcEEEEecCCC
Q 021121          292 VEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       +.++++|+.|+.|++|++...
T Consensus       391 -~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  391 -GKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             -CCeEEEEeCCceEEEEeCCcc
Confidence             789999999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.8e-37  Score=249.60  Aligned_cols=286  Identities=24%  Similarity=0.366  Sum_probs=245.1

Q ss_pred             CceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            2 PVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         2 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      |.+...+...=++|+.  .+.++++.+.        .|++|+...+.  ...+..++ .+.|+++.|+++| .+|++|..
T Consensus       172 P~l~dDfY~nlldWss--~n~laValg~--------~vylW~~~s~~--v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~  237 (484)
T KOG0305|consen  172 PGLQDDFYLNLLDWSS--ANVLAVALGQ--------SVYLWSASSGS--VTELCSFG-EELVTSVKWSPDG-SHLAVGTS  237 (484)
T ss_pred             CcccccHhhhHhhccc--CCeEEEEecc--------eEEEEecCCCc--eEEeEecC-CCceEEEEECCCC-CEEEEeec
Confidence            3344444445588998  7888888765        89999988775  44444444 7899999999999 69999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-eeccccceEEEEEec
Q 021121           82 DGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNP  159 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~  159 (317)
                      +|.|.|||....   +....+.. |...|-+++|+  +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus       238 ~g~v~iwD~~~~---k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  238 DGTVQIWDVKEQ---KKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             CCeEEEEehhhc---cccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence            999999998766   66667777 99999999999  23 899999999999999998866555 888999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe--cCCcEEEEEccCCCccEEEEecCCC
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS--VDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      + +.++++|+.|+.+.|||....+++..+..|...|.+++|+|....+||+|+  .|+.|++||..++.. +.... -..
T Consensus       312 d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgs  388 (484)
T KOG0305|consen  312 D-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGS  388 (484)
T ss_pred             C-CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCC
Confidence            9 999999999999999999888999999999999999999999999999975  689999999998764 44443 456


Q ss_pred             ceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          238 AVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .|.+|.|++..+.++.+-+ .++.|.||++.+.+ .+..+.+|...|..++++|+ +..+++|+.|.++++|++-.
T Consensus       389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l~gH~~RVl~la~SPd-g~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK-LVAELLGHTSRVLYLALSPD-GETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc-eeeeecCCcceeEEEEECCC-CCEEEEecccCcEEeccccC
Confidence            8999999999987665544 56789999999865 67889999999999999999 89999999999999999866

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-37  Score=220.52  Aligned_cols=241  Identities=22%  Similarity=0.322  Sum_probs=212.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .+.++|+.+.|+-+| ++.++++.|.+|++|+...+   ..++++.+|..+|..++.+.|+. .+++|+.|..+.+||++
T Consensus        15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ccccceEEEEEccCC-CEEEEcCCCceEEeeccccc---ceeeeecCCCceeeecccccccc-ccccCCCCceEEEEEcc
Confidence            578899999999999 69999999999999998776   89999999999999999999887 89999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      +|+..+.+++|.+.|+.++|+.+ ...+++|+.|.++++||-++.  ++++.+......|.++...   +..|++|+.||
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DG  165 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDG  165 (307)
T ss_pred             cCeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCC
Confidence            99999999999999999999988 899999999999999999865  6777887778889999875   46799999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeE--EEEeccC
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV--DMSVLVE  293 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~  293 (317)
                      +++.||+|.++. ....  ...+|++++|+++++ ...+++.|+++++.|-.+++ ++..+.+|...-+.+  +++.. .
T Consensus       166 tvRtydiR~G~l-~sDy--~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGk-lL~sYkGhkn~eykldc~l~qs-d  239 (307)
T KOG0316|consen  166 TVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGN-CSLASSLDSTLRLLDKETGK-LLKSYKGHKNMEYKLDCCLNQS-D  239 (307)
T ss_pred             cEEEEEeeccee-ehhh--cCCcceeEEecCCCC-EEEEeeccceeeecccchhH-HHHHhcccccceeeeeeeeccc-c
Confidence            999999999764 3333  345899999999998 68888999999999988887 778899997755544  45544 6


Q ss_pred             CeEEEeecCCcEEEEecCCC
Q 021121          294 GLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+++|+.||.|++||+...
T Consensus       240 thV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             eeEEeccCCceEEEEEeccc
Confidence            69999999999999999764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-37  Score=261.26  Aligned_cols=246  Identities=23%  Similarity=0.395  Sum_probs=224.0

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ....|..++|+|..+ .++++-..|.|++||.+-+   ..+..+..|.++|..++|+|+++ ++++|+.|-.|++|+..+
T Consensus         8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             ccccccceecCCCCC-EEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEeccc
Confidence            456789999999974 9999999999999999876   78888999999999999999998 999999999999999999


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEE
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK  218 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  218 (317)
                      .+++.++.+|-+.|..+.|++. -..++++++|.+|+||+.++.+++..+.+|...|.|..|+| ...++++++-|.+||
T Consensus        83 rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVR  160 (1202)
T ss_pred             ceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEE
Confidence            9999999999999999999998 78899999999999999999999999999999999999999 999999999999999


Q ss_pred             EEEccCCCc----------------------------cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          219 IWDVRNYRV----------------------------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       219 v~d~~~~~~----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      |||+...+.                            ....+.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecccc
Confidence            999863221                            1234678999999999999998 89999999999999987655


Q ss_pred             -ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          271 -ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       271 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       -.+.+..+|...|.++-|+|. .++++|.|.|++|++||+...
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCc-cceeEecCCCccEEEEecccc
Confidence             234667899999999999998 889999999999999999764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=222.00  Aligned_cols=249  Identities=20%  Similarity=0.282  Sum_probs=220.3

Q ss_pred             eeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           54 LVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        54 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      +...+|..+++.+.|+.+|+ +|++++.|....+|--.++   +.+.++.+|.+.|+|+..+.+.+ .+++|+.|.++++
T Consensus         4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kL   78 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKL   78 (327)
T ss_pred             cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcc-eeeeccccceeEE
Confidence            44558999999999999995 9999999999999998766   88999999999999999998887 9999999999999


Q ss_pred             EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC-----CCeEEEEeCC-------CCCceeeeccCccceEEEEec
Q 021121          134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-----DCTLRIWDVR-------EMGSTMIIPAHEFEILACDWN  201 (317)
Q Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~v~~i~~~  201 (317)
                      ||+++|+++..++ ...+|..+.|++. +++++.+.+     .+.|.++|++       ..++...+..+++.++.+.|.
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            9999999999987 5678999999998 676666543     4779999998       446677888888999999999


Q ss_pred             CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----------
Q 021121          202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----------  270 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----------  270 (317)
                      | .+..|++|.+||.|..||++++.+.+.....|...|+.++++|+.. ++++++.|.+-++||+.+.+           
T Consensus       157 ~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv  234 (327)
T KOG0643|consen  157 P-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPV  234 (327)
T ss_pred             c-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeecccc
Confidence            9 9999999999999999999998877788888999999999999998 79999999999999987532           


Q ss_pred             -------------------------------------------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          271 -------------------------------------------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       271 -------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                                                                 +.+.+..+|-++|++++|+|+ ++..++|+.||.||+
T Consensus       235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd-GksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD-GKSYSSGGEDGYVRL  313 (327)
T ss_pred             cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC-CcccccCCCCceEEE
Confidence                                                       112456689999999999999 899999999999999


Q ss_pred             EecCC
Q 021121          308 WQQGM  312 (317)
Q Consensus       308 w~~~~  312 (317)
                      ..++.
T Consensus       314 h~Fd~  318 (327)
T KOG0643|consen  314 HHFDS  318 (327)
T ss_pred             EEecc
Confidence            87654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=217.88  Aligned_cols=244  Identities=24%  Similarity=0.428  Sum_probs=210.4

Q ss_pred             ecCCCCeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCCCCCCCceee-ccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSES-HDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      .+|.+.+..++|+|- | .+||+++.|..|++|+...+....+...+ .+|+..|.+++|+|.|+ +|++++.|.++.||
T Consensus        11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw   88 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIW   88 (312)
T ss_pred             cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEe
Confidence            368889999999997 5 59999999999999998854334444333 37999999999999999 99999999999999


Q ss_pred             EcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCCcEEE
Q 021121          135 TVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDDCLIA  209 (317)
Q Consensus       135 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~  209 (317)
                      .-..+  +++..+.+|...|.+++|+++ +++|++++.|..|-+|.....   ++...++.|...|..+.|+| ...+|+
T Consensus        89 ~k~~~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~  166 (312)
T KOG0645|consen   89 KKEDGEFECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLF  166 (312)
T ss_pred             ecCCCceeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeE
Confidence            86644  678899999999999999999 999999999999999999855   45667889999999999999 999999


Q ss_pred             EEecCCcEEEEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          210 SASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      +++.|.+|++|+-....  .+..++.+|...|.+++|+|.|. -|++++.|++++||...+.     .-..|...++.+.
T Consensus       167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~  240 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP  240 (312)
T ss_pred             EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC-----cchhcccceEeee
Confidence            99999999999876322  35788999999999999999998 4999999999999986632     2234678899999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |.   ...|++++.|+.|++|.-...
T Consensus       241 W~---~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  241 WD---NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             ec---ccceEeccCCCEEEEEEecCC
Confidence            98   358999999999999988754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.7e-36  Score=269.33  Aligned_cols=271  Identities=21%  Similarity=0.357  Sum_probs=221.6

Q ss_pred             CceEEEEecCCCCCcc--eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-----CCCceeeccCCcc
Q 021121           36 NGRVHVLDLSPAAPAL--TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-----ANPIRSLHEHTRE  108 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-----~~~~~~~~~~~~~  108 (317)
                      +|-+++|+........  ..-....|...|.+++|+|++ .++++|+.|+.|++|++.....     ..+...+. +...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCc
Confidence            4567777766433110  001122478899999999998 5999999999999999753210     01222233 3568


Q ss_pred             eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121          109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII  188 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (317)
                      +.+++|++....+|++++.||.|++||+.+++.+..+..|...|++++|+|.++.+|++|+.||.|++||++++..+..+
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            99999998655599999999999999999999999999999999999999855889999999999999999998888777


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      ..+ ..+.++.|++.++.++++|+.|+.|++||+++.+.++..+.+|...|.++.|. ++. +|++++.|++|++||++.
T Consensus       615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCC
Confidence            644 57899999765899999999999999999998765677788999999999997 555 699999999999999975


Q ss_pred             c-----cceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          269 E-----DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       269 ~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .     ...+..+.+|...+..++|+|+ +.+|++|+.|+.|++|+...
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~-~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVS-DGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCC-CCEEEEEeCCCEEEEEECCC
Confidence            3     1356778899999999999998 78999999999999999754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.8e-36  Score=247.10  Aligned_cols=284  Identities=19%  Similarity=0.310  Sum_probs=246.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|+++++|.  +..++++++       .+.+.+|+..+.+    .+..+... -+.+..|.|-+ +++++|...|.+
T Consensus       372 HR~dVRsl~vS~--d~~~~~Sga-------~~SikiWn~~t~k----ciRTi~~~-y~l~~~Fvpgd-~~Iv~G~k~Gel  436 (888)
T KOG0306|consen  372 HRSDVRSLCVSS--DSILLASGA-------GESIKIWNRDTLK----CIRTITCG-YILASKFVPGD-RYIVLGTKNGEL  436 (888)
T ss_pred             chhheeEEEeec--CceeeeecC-------CCcEEEEEccCcc----eeEEeccc-cEEEEEecCCC-ceEEEeccCCce
Confidence            678899999999  666666665       6799999998754    34444333 78899999976 799999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-----CceeE--Eee-----ccccceE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-----PTSVR--TFK-----EHAYCVY  153 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~--~~~-----~~~~~v~  153 (317)
                      .+||+...   ..+...+.|.+.|++++.+||+. .+++|+.|.+|++||..-     +...+  .+.     .-+..|.
T Consensus       437 ~vfdlaS~---~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL  512 (888)
T KOG0306|consen  437 QVFDLASA---SLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL  512 (888)
T ss_pred             EEEEeehh---hhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence            99999876   66777789999999999999998 899999999999999742     21111  111     2356799


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      |+.++|+ +.+++++--|.++++|-+.+.+....+.+|.-||.|+..+| ++++++||+.|..|++|-+.-+. +...+.
T Consensus       513 ~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGD-CHKS~f  589 (888)
T KOG0306|consen  513 CVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGD-CHKSFF  589 (888)
T ss_pred             EEEEcCC-CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccch-hhhhhh
Confidence            9999999 99999999999999999999999999999999999999999 99999999999999999988766 478888


Q ss_pred             cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +|...|.++.|.|... ++.+++.|+.|+-||-..-+ .++.+.+|...|++++.+|+ |.+++++|.|.+|++|....+
T Consensus       590 AHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~~ev~cLav~~~-G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  590 AHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFE-EIQKLDGHHSEVWCLAVSPN-GSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             cccCceeEEEEcccce-eEEEecCcceEEeechhhhh-hheeeccchheeeeeEEcCC-CCeEEeccCCceeEeeeccCc
Confidence            9999999999999776 79999999999999987765 67899999999999999999 889999999999999998764


Q ss_pred             C
Q 021121          314 P  314 (317)
Q Consensus       314 ~  314 (317)
                      +
T Consensus       667 ~  667 (888)
T KOG0306|consen  667 I  667 (888)
T ss_pred             c
Confidence            3

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.3e-37  Score=232.83  Aligned_cols=287  Identities=17%  Similarity=0.281  Sum_probs=248.7

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc----ee-eeeecCCCCeeEEEecCCCCCeEEE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL----TE-LVAFDTADGVYDLAWSESHDSLLIA   78 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~----~~-~~~~~~~~~v~~~~~~~~~~~~l~~   78 (317)
                      |.....+.|..|||  ++.++++++.      ||-|.+|++.++....    +. -...-+..+|.|+.|+.|. .++|+
T Consensus       210 Fg~KSh~EcA~FSP--DgqyLvsgSv------DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAs  280 (508)
T KOG0275|consen  210 FGQKSHVECARFSP--DGQYLVSGSV------DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLAS  280 (508)
T ss_pred             cccccchhheeeCC--CCceEeeccc------cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhc
Confidence            55667888999999  7999999987      9999999998765211    11 1112367889999999998 59999


Q ss_pred             EEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEE
Q 021121           79 AVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW  157 (317)
Q Consensus        79 ~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (317)
                      |+.||.|++|.+.++   .+++.+. .|...|+|+.|+.|+. .+++++.|.++++.-+++|++++.+++|.+.|+...|
T Consensus       281 GsqDGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             cCcCCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence            999999999999987   7777776 8999999999999998 8999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-
Q 021121          158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-  234 (317)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-  234 (317)
                      .++ ++.+++++.||+|++|+..+.+++.+++.  .+.+|+++-.-|.+...++++...+++++.++...  .+..+.. 
T Consensus       357 t~d-G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSG  433 (508)
T KOG0275|consen  357 TDD-GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSG  433 (508)
T ss_pred             cCC-CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccC
Confidence            999 89999999999999999999999888764  45678999998988899999999999999998752  2444432 


Q ss_pred             --CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          235 --HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       235 --~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                        ..+..-+.+.+|.|. ++++.+.|+.++.|.+.+++ +-..+.-|+..+.+++-+|. .++|++-+.||.+++|.
T Consensus       434 kREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPH-qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  434 KREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPH-QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCc-eeeeeecccccccccccCcc-cchhhhhcccchhhhcC
Confidence              234566788999999 79999999999999999987 66788899999999999998 89999999999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3.2e-36  Score=235.29  Aligned_cols=258  Identities=19%  Similarity=0.395  Sum_probs=218.8

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-------eeeeecCCCCeeEEEecCCCCCeE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-------ELVAFDTADGVYDLAWSESHDSLL   76 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l   76 (317)
                      +.|+..|..+.+-|+++..+++.+.       .+.|+|||..+......       .+...+|...-+.++|++.....|
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~-------~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTS-------SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCC-------CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            5688999999999974444333333       88999999976543222       234557777778899999888899


Q ss_pred             EEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC--CCceeEEeecccc
Q 021121           77 IAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAY  150 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~  150 (317)
                      ++++.|+.|++||+.....    ..+...+.+|...|..++|++....+|++++.|+.+.|||++  +.++.+...+|.+
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            9999999999999986543    345567889999999999999888899999999999999999  5566777789999


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--  227 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--  227 (317)
                      +++|++|+|.++.+||+|+.|++|.+||+|+. +++..+.+|+..|.++.|+|.....|++++.|+.+.+||+..-..  
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            99999999999999999999999999999987 467788999999999999998899999999999999999975322  


Q ss_pred             -----------cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          228 -----------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       228 -----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                                 ++....+|...|..+.|+|+.+..+++.+.|+.+.||++..
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                       24566789999999999999998999999999999999763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.5e-34  Score=232.46  Aligned_cols=244  Identities=30%  Similarity=0.451  Sum_probs=217.0

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .|..+|.+++|+|++ .++++++.+|.+++|++...   .....+..|...+..+.|+|+++ .+++++.+|.|++||+.
T Consensus         7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLE   81 (289)
T ss_pred             ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcC
Confidence            688999999999997 59999999999999999865   46667778999999999999986 89999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      +++....+..|...+.++.|+|+ +.++++++.+|.+++||+++++....+..|...+.+++|+| ++.++++++.++.|
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i  159 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI  159 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence            98888888888889999999998 78888888899999999998888888888888999999999 78888888889999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      ++||++..+ +...+..|...+.++.|+|+++ .+++++.++.|++||++..+ ....+..|...+.+++|+|+ +.+++
T Consensus       160 ~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~  235 (289)
T cd00200         160 KLWDLRTGK-CVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPD-GYLLA  235 (289)
T ss_pred             EEEEccccc-cceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCCc-eecchhhcCCceEEEEEcCC-CcEEE
Confidence            999998765 4667778888999999999998 57777789999999998765 55667688889999999998 78888


Q ss_pred             EeecCCcEEEEecCC
Q 021121          298 STGWDELVYVWQQGM  312 (317)
Q Consensus       298 s~~~dg~i~~w~~~~  312 (317)
                      +++.||.|++|++..
T Consensus       236 ~~~~~~~i~i~~~~~  250 (289)
T cd00200         236 SGSEDGTIRVWDLRT  250 (289)
T ss_pred             EEcCCCcEEEEEcCC
Confidence            888899999999975

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-36  Score=220.44  Aligned_cols=286  Identities=16%  Similarity=0.286  Sum_probs=241.1

Q ss_pred             ecCcceeEEEEecC-CCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            5 KTPFNGYSVKFSPF-YESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         5 ~~~~~v~~~~~~p~-~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      .|..+|..++|||. .++.|+++.+.      ||.-.+-+-+++.. +-  ...+|++.|.....+.+. ...++++.|-
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~k------d~~pmlr~g~tgdw-ig--tfeghkgavw~~~l~~na-~~aasaaadf   81 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASK------DGKPMLRNGDTGDW-IG--TFEGHKGAVWSATLNKNA-TRAASAAADF   81 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEecc------CCCchhccCCCCCc-EE--eeeccCcceeeeecCchh-hhhhhhcccc
Confidence            37789999999983 46888888876      77777666555542 11  223799999999999875 6888999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeeccccceEEEEEecCCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      +-++||.-++   ..+..+. |+.-|.+++|+.|.. +|++|+.+..++|||++..+ +...+.+|.+.|..+.|... .
T Consensus        82 takvw~a~tg---delhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D  155 (334)
T KOG0278|consen   82 TAKVWDAVTG---DELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-D  155 (334)
T ss_pred             hhhhhhhhhh---hhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-C
Confidence            9999998876   5555554 889999999999987 99999999999999998764 56678899999999999987 7


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +.+++++.|++||+||.++++.++++. ...+|+++.+++ ++++|.++ ..+.|.+||..+... ++..+ -...|.+.
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~-lKs~k-~P~nV~SA  230 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGL-LKSYK-MPCNVESA  230 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEEe-cCceeEEeccccccc-eeecc-Cccccccc
Confidence            778888999999999999999999887 567899999999 88877765 467899999998764 55544 34578999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .++|+.. ++++|++|..++.||..+++++-....+|.++|.++.|+|+ +...++|+.||+|++|.+...
T Consensus       231 SL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd-GE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  231 SLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD-GELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             cccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-CceeeccCCCceEEEEEecCC
Confidence            9999986 79999999999999999998665556899999999999999 889999999999999998764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-35  Score=210.78  Aligned_cols=278  Identities=16%  Similarity=0.225  Sum_probs=230.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +..+|.++.|+-  ++.++.+++.      |.+|++|+...+. .++..  .+|...|..++.+.|+ ..+++|+.|..+
T Consensus        16 ~qgaV~avryN~--dGnY~ltcGs------drtvrLWNp~rg~-liktY--sghG~EVlD~~~s~Dn-skf~s~GgDk~v   83 (307)
T KOG0316|consen   16 AQGAVRAVRYNV--DGNYCLTCGS------DRTVRLWNPLRGA-LIKTY--SGHGHEVLDAALSSDN-SKFASCGGDKAV   83 (307)
T ss_pred             cccceEEEEEcc--CCCEEEEcCC------CceEEeecccccc-eeeee--cCCCceeeeccccccc-cccccCCCCceE
Confidence            568999999999  6777777776      8999999987664 12222  2788899999999887 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC--ceeEEeeccccceEEEEEecCCCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      .+||+.++   +..+.+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++.  ++++.+......|.++..+   +.
T Consensus        84 ~vwDV~TG---kv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~h  156 (307)
T KOG0316|consen   84 QVWDVNTG---KVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EH  156 (307)
T ss_pred             EEEEcccC---eeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---cc
Confidence            99999988   88999999999999999999887 9999999999999999865  6788888888899999987   66


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce--eE
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV--RK  241 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v--~~  241 (317)
                      .+++|+.||+++.||++.+.....+-  ..+|+++.|++ +++..++++.|+++++.|-.+++. +...++|...-  ..
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykld  232 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLD  232 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecC-CCCEEEEeeccceeeecccchhHH-HHHhcccccceeeee
Confidence            79999999999999999987665554  46799999999 999999999999999999999874 77888887543  34


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce-eEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF-AVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      .+++.... .+++|++||.+.+||+.... ++..+..+... +.+++++|. ...|+++.. +.+..|.-
T Consensus       233 c~l~qsdt-hV~sgSEDG~Vy~wdLvd~~-~~sk~~~~~~v~v~dl~~hp~-~~~f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  233 CCLNQSDT-HVFSGSEDGKVYFWDLVDET-QISKLSVVSTVIVTDLSCHPT-MDDFITATG-HGDLFWYQ  298 (307)
T ss_pred             eeecccce-eEEeccCCceEEEEEeccce-eeeeeccCCceeEEeeecccC-ccceeEecC-Cceeceee
Confidence            56666655 69999999999999999876 56677777776 899999998 444555443 44556643

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.4e-34  Score=240.63  Aligned_cols=233  Identities=22%  Similarity=0.331  Sum_probs=189.0

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV  131 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  131 (317)
                      ..+|.+.|++++|+|.++.+|++|+.|++|++||+.....    ..++..+.+|...|.+++|+|++.++|++++.|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            3478999999999994336999999999999999975421    235667889999999999999876699999999999


Q ss_pred             EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccc-eEEEEecCCCCcEEEE
Q 021121          132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE-ILACDWNKYDDCLIAS  210 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~  210 (317)
                      ++||+++++....+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..|... ...+.|.+ ++..+++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt  228 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIIT  228 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEE
Confidence            99999999999899999999999999998 899999999999999999999988888888754 45678888 6666665


Q ss_pred             Ee----cCCcEEEEEccCCCccEEEEecC-CCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeecccceeE
Q 021121          211 AS----VDKSIKIWDVRNYRVPIAVLNGH-GYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDHHTEFAV  284 (317)
Q Consensus       211 ~~----~d~~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~  284 (317)
                      ++    .|+.|++||+++...++.....+ ...+....|++++. +|++++ .|+.|++||+.+++........+..++.
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence            44    47899999999877666655433 34556677899998 566666 5999999999987743332233456788


Q ss_pred             eEEEEec
Q 021121          285 GVDMSVL  291 (317)
Q Consensus       285 ~~~~~~~  291 (317)
                      +++|.|.
T Consensus       308 g~~~~pk  314 (493)
T PTZ00421        308 GLCMMPK  314 (493)
T ss_pred             ceEeccc
Confidence            8999885

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-36  Score=247.99  Aligned_cols=294  Identities=22%  Similarity=0.339  Sum_probs=242.0

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC----CCCeeEEEecCCCCCeEEEEEcC
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT----ADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      .....+++.+++ ..++++++.        ..+.||.+++..........+..    .-.+..++|.....++||+++..
T Consensus        39 k~~~nAIs~nr~-~~qiv~AGr--------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n  109 (839)
T KOG0269|consen   39 KAKANAISVNRD-INQIVVAGR--------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN  109 (839)
T ss_pred             ccccceEeecCC-cceeEEecc--------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC
Confidence            345567778885 456666654        37888888876543332222211    22456788987667899999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      |.|.+||+......+.+..+..|...+++++|++..+++|++|+.||.|++||++..+....+.+....|..+.|+|..+
T Consensus       110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG  189 (839)
T ss_pred             CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence            99999999875445677788999999999999999999999999999999999999988888888889999999999989


Q ss_pred             CeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          163 DVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      +.|+++.+.|.+++||+|.. +...++..|.++|.|+.|+| ++.+||+|+.|+.|+|||..+.+...........+|.+
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~r  268 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGR  268 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeee
Confidence            99999999999999999976 45667889999999999999 99999999999999999998655322222224568999


Q ss_pred             EEecCCCCeeEEeee--cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          242 VKFSPHRRNLLASCS--YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.|-|..++.|++++  .|-.|+|||++..-.+...+..|...++.++|.......+.+++.||.|..-.+
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence            999999998888877  577899999999888888999999999999998744568999999998765443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=239.45  Aligned_cols=250  Identities=22%  Similarity=0.344  Sum_probs=217.7

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|..+|+++.|.|....+|++++.|+.|+||++-.  ...+++++.+|..+|.+++|+++|. .+++++.|+.|++||+
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLKLWDT  287 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCC-eeeeeecceeeeeecc
Confidence            379999999999994448999999999999999985  3588999999999999999999998 8999999999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      ++|+++..+. ....++|+.|+|++.+++++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-+ ++..+++.++|++
T Consensus       288 ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks  365 (503)
T KOG0282|consen  288 ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKS  365 (503)
T ss_pred             ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCcc
Confidence            9999999987 4567999999999779999999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc--ceeeeeeccc--ceeEeEEEEecc
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHT--EFAVGVDMSVLV  292 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~--~~v~~~~~~~~~  292 (317)
                      ++||+.+.+-........+.....++..+|+++ ++++-+.|+.|.++.+...-  .....+.+|.  +.-..+.|||| 
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-  443 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-  443 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-
Confidence            999999876532222333344677899999999 79999999999999875533  2234566775  45567899999 


Q ss_pred             CCeEEEeecCCcEEEEecCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.+|++|+.||.+.+||..+-
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTT  464 (503)
T ss_pred             CCeEEeecCCccEEEeechhh
Confidence            899999999999999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=234.26  Aligned_cols=246  Identities=20%  Similarity=0.308  Sum_probs=215.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ...+.|.+++|+|..+.-+|+.+. -.+.+|+....   ...+.+...+..+.+++|..||+ ++++|+..|.|++||+.
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMK   98 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecc-cEEEEEecchh---hhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccc
Confidence            345689999999988777777664 46999998765   55555666788999999999999 99999999999999988


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      +...++.+.+|+.++..+.|+|+++.++++|++|+.+++||+.+......+.+|+..|.|.+|+|.++.++++|+.||.|
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            77788899999999999999999899999999999999999998887668889999999999999888899999999999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      ++||++.....+..+ .|+.+|.++.+-|.|. ++++++ ...|+|||+.++...+..+..|...|+|+++..+ +..|+
T Consensus       179 rl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~-~~rLl  254 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD-STRLL  254 (487)
T ss_pred             EEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecC-CceEe
Confidence            999999875444444 5899999999999998 688776 5679999999887777778889999999999998 78999


Q ss_pred             EeecCCcEEEEecCC
Q 021121          298 STGWDELVYVWQQGM  312 (317)
Q Consensus       298 s~~~dg~i~~w~~~~  312 (317)
                      ++|-|+.+++||+..
T Consensus       255 S~sLD~~VKVfd~t~  269 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTN  269 (487)
T ss_pred             ecccccceEEEEccc
Confidence            999999999999643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.6e-34  Score=243.65  Aligned_cols=277  Identities=22%  Similarity=0.331  Sum_probs=238.3

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ...+.+..|++   +.+..+..       +..|++|+.....  .......+|.+.|.++++.. +..++++|+.|.+++
T Consensus       208 ~~~~~~~q~~~---~~~~~~s~-------~~tl~~~~~~~~~--~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~r  274 (537)
T KOG0274|consen  208 DHVVLCLQLHD---GFFKSGSD-------DSTLHLWDLNNGY--LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTER  274 (537)
T ss_pred             cchhhhheeec---CeEEecCC-------CceeEEeecccce--EEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEE
Confidence            45566777774   55555554       8899999998765  22222458999999999987 457999999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      +||..++   .+...+.+|.+.|.++...+.   .+++|+.|.+|++|+++++..+..+.+|.++|.++..+   +.+++
T Consensus       275 vWd~~sg---~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lv  345 (537)
T KOG0274|consen  275 VWDCSTG---ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLV  345 (537)
T ss_pred             eEecCCC---cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEE
Confidence            9998877   899999999999999988743   78889999999999999999999999999999999998   67999


Q ss_pred             EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121          167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP  246 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~  246 (317)
                      +|+.|++|++||..+++++..+.+|...|.++.+.+ . +.+++|+.|++|++||+++...++..+.+|..-+..+.+. 
T Consensus       346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-  422 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-  422 (537)
T ss_pred             EEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-
Confidence            999999999999999999999999999999998876 3 8999999999999999999745689999999988777764 


Q ss_pred             CCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          247 HRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                       ++ +|++++.|++|++||..+++ +...+.+ |...|..+++.   ...+++++.||.+++||+...+
T Consensus       423 -~~-~Lvs~~aD~~Ik~WD~~~~~-~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  423 -DN-FLVSSSADGTIKLWDAEEGE-CLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             -cc-eeEeccccccEEEeecccCc-eeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCc
Confidence             44 79999999999999999987 5566776 66888888876   4678899999999999998764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5e-34  Score=208.25  Aligned_cols=284  Identities=20%  Similarity=0.248  Sum_probs=239.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +..++.+++|+.  ++.-+++++.      |+.+.+|++.... ........+|.+.|-.++|+|..+.++++++.|.+|
T Consensus        19 ~~~~v~Sv~wn~--~g~~lasgs~------dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   19 HVQKVHSVAWNC--DGTKLASGSF------DKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             hhhcceEEEEcc--cCceeeeccc------CCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            667899999999  6777777765      9999999998774 344555568888999999999888899999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||+...   ++........+. .-+.|+|+|. ++++++.|..|...|.++.+.....+ ....+..+.|+-+ ++++
T Consensus        90 r~wd~r~~---k~~~~i~~~~en-i~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~-nd~F  162 (313)
T KOG1407|consen   90 RIWDIRSG---KCTARIETKGEN-INITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNS-NDLF  162 (313)
T ss_pred             EEEEeccC---cEEEEeeccCcc-eEEEEcCCCC-EEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCC-CCEE
Confidence            99999877   666655544444 4578999998 99999999999999999887776655 5667889999965 7888


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      +.....|+|.|......+++..++.|.....||.|+| +|+++|+|+.|-.+.+||+...- +.+.+..+.-+|+.+.|+
T Consensus       163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELi-C~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELI-CERCISRLDWPVRTLSFS  240 (313)
T ss_pred             EEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhh-hheeeccccCceEEEEec
Confidence            7777789999999999999999999999999999999 99999999999999999998765 477888899999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC---------CcEEEEecC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD---------ELVYVWQQG  311 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~~w~~~  311 (317)
                      .+|+ +||++++|..|-|=+++++..+. . ..+.++...++|+|. ..+||-++.|         |.+++|-+.
T Consensus       241 ~dg~-~lASaSEDh~IDIA~vetGd~~~-e-I~~~~~t~tVAWHPk-~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  241 HDGR-MLASASEDHFIDIAEVETGDRVW-E-IPCEGPTFTVAWHPK-RPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCcc-eeeccCccceEEeEecccCCeEE-E-eeccCCceeEEecCC-CceeeEEecCCCCccccccceeEEecCC
Confidence            9999 79999999999999999998543 2 346788999999997 6677665543         677777654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.9e-36  Score=228.12  Aligned_cols=283  Identities=18%  Similarity=0.249  Sum_probs=231.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |.+.|.|++=+|.....+ ++++.      ||.|+|||+..... .  .....|.+.|..|++..   ..+++++.|.+|
T Consensus        65 HrdGV~~lakhp~~ls~~-aSGs~------DG~VkiWnlsqR~~-~--~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtv  131 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTV-ASGSC------DGEVKIWNLSQREC-I--RTFKAHEGLVRGICVTQ---TSFFTVGDDKTV  131 (433)
T ss_pred             cccccchhhcCcchhhhh-hcccc------CceEEEEehhhhhh-h--heeecccCceeeEEecc---cceEEecCCcce
Confidence            778999999999422333 33333      99999999987652 1  22226888999999986   368888899999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +.|.++.+    +..++.+ ...+..+.-+..+. .+++++.  .|.|||.+...++..+.-....|.++.|+|....+|
T Consensus       132 K~wk~~~~----p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL  203 (433)
T KOG0268|consen  132 KQWKIDGP----PLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL  203 (433)
T ss_pred             eeeeccCC----cceeeec-cccccccccccccc-cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence            99998753    5555543 45666666665555 7888885  599999999999999988888899999999988999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++|+.|+.|.+||+++..++..+. ....-+.|+|+| ....++++.+|..++.||++....++....+|.+.|.++.|+
T Consensus       204 as~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  204 ASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            999999999999999999888775 445668899999 999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |.|+. +++||.|.+|+||.++.+...--.....-..|.++.||.| .+++++||+|+.|++|.-...
T Consensus       282 ptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D-skyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  282 PTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD-SKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             CCcch-hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc-ccEEEecCCCcceeeeecchh
Confidence            99995 9999999999999988765211111111246999999999 899999999999999987653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.4e-34  Score=247.97  Aligned_cols=296  Identities=21%  Similarity=0.291  Sum_probs=241.0

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--------cceee-eeecCCCCeeEEEecCCCCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--------ALTEL-VAFDTADGVYDLAWSESHDSLL   76 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--------~~~~~-~~~~~~~~v~~~~~~~~~~~~l   76 (317)
                      +...|++++.+|  ++..++++++.    .||.++||+.+.-..        ....+ ....|.+.|+|+.|+||| .+|
T Consensus        12 ~~~~IfSIdv~p--dg~~~aTgGq~----~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~l   84 (942)
T KOG0973|consen   12 NEKSIFSIDVHP--DGVKFATGGQV----LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYL   84 (942)
T ss_pred             CCeeEEEEEecC--CceeEecCCcc----ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeE
Confidence            346799999999  56666666632    288888999864221        01112 223789999999999999 699


Q ss_pred             EEEEcCCeEEEEEeCCC---------------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121           77 IAAVADGSVKIYDTALP---------------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      |+|++|+.|.||+....               +.++....+.+|...|..++|+|++. ++++++.|++|.+|+..+.+.
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEcccccee
Confidence            99999999999998730               22345667889999999999999998 999999999999999999999


Q ss_pred             eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC------ccceEEEEecCCCCcEEEEEec--
Q 021121          142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH------EFEILACDWNKYDDCLIASASV--  213 (317)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~--  213 (317)
                      +..+++|.+.|..+.|.|- +++|++-+.|++|++|++.+-...+.+..+      ...+..+.|+| +|.+|++...  
T Consensus       164 ~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n  241 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVN  241 (942)
T ss_pred             eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhcc
Confidence            9999999999999999999 999999999999999997765555555432      33578999999 9999998643  


Q ss_pred             --CCcEEEEEccCCCccEEEEecCCCceeEEEecCC--------C-------Ce-eEEeeecCCeEEEEecccccceeee
Q 021121          214 --DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH--------R-------RN-LLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       214 --d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~-~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                        -..+.|.+-.+.+. -..+.+|..++.++.|+|.        |       .+ ++|+|+.|++|.||.....++++-.
T Consensus       242 ~~~~~~~IieR~tWk~-~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi  320 (942)
T KOG0973|consen  242 GGKSTIAIIERGTWKV-DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI  320 (942)
T ss_pred             CCcceeEEEecCCcee-eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence              23688888766553 5678899999999999982        1       11 6899999999999999887766655


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..-....|.+++|+|| |..|++++.||+|.+..++.+
T Consensus       321 ~~lf~~SI~DmsWspd-G~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  321 HNLFNKSIVDMSWSPD-GFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhcCceeeeeEcCC-CCeEEEEecCCeEEEEEcchH
Confidence            5666778999999999 889999999999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-35  Score=243.73  Aligned_cols=248  Identities=19%  Similarity=0.329  Sum_probs=204.6

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC--------------------------------C------------
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL--------------------------------P------------   93 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~--------------------------------~------------   93 (317)
                      .|.+.|.++.|++|| ++||+|+.|+.|+||.+..                                .            
T Consensus       265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            588999999999999 6999999999999998876                                0            


Q ss_pred             -------------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           94 -------------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        94 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                                   -..+++..+.+|.+.|..+.|+.++  +|++++.|.+|++|++...++++.|. |..-|+|++|+|.
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv  420 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV  420 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence                         0113455678899999999999875  89999999999999999999999987 8999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cC---
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GH---  235 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~---  235 (317)
                      +.++|++|+-||+|+||++...+...- .....-|++++|.| +|+..++|+.+|.+++|+....+. .....  .|   
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~-~~~~~I~~~~~K  497 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKL-VSDFHIRLHNKK  497 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeE-EEeeeEeeccCc
Confidence            999999999999999999987655443 33457899999999 899999999999999999987653 22211  11   


Q ss_pred             ---CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          236 ---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       236 ---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                         ...|+.+.|.|....-+++.+.|..|+|+|.++.+ ++..+.++..  .-....|+.+ +++|++++.|..|++|++
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~D-gk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSD-GKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccC-CCEEEEeecCceEEEEeC
Confidence               23799999998766546667789999999997765 5566665433  2345688888 899999999999999998


Q ss_pred             CCCC
Q 021121          311 GMDP  314 (317)
Q Consensus       311 ~~~~  314 (317)
                      ...+
T Consensus       576 ~~~~  579 (712)
T KOG0283|consen  576 DSFN  579 (712)
T ss_pred             CCCc
Confidence            6544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-32  Score=196.95  Aligned_cols=293  Identities=19%  Similarity=0.291  Sum_probs=230.8

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC-----------CC-cceeeeeecCCCCeeEEEecC
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA-----------AP-ALTELVAFDTADGVYDLAWSE   70 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-----------~~-~~~~~~~~~~~~~v~~~~~~~   70 (317)
                      .++..+.|++++|+|  .+.+.+.+++      ..+++|-....-           .+ .........|.+.|.|.+|+|
T Consensus        28 ~l~dsqairav~fhp--~g~lyavgsn------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHP--AGGLYAVGSN------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             EecchhheeeEEecC--CCceEEeccC------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence            355678899999999  4555554443      567776654321           01 111223336889999999999


Q ss_pred             CCCCeEEEEEcCCeEEEEEeCCCCC--CCCceeeccCCcceEEEEEecC---CCCEEEEEc-CCCEEEEEEcCCCceeEE
Q 021121           71 SHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPT---RRDSFITSS-WDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        71 ~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~v~iwd~~~~~~~~~  144 (317)
                      .| .++++|++|.+|++..++....  ......+.-|.+.|..++|..+   +..+|++++ .|..|++-|..+++..+.
T Consensus       100 ~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  100 CG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             cc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            99 5999999999999987765421  1233456779999999999643   333666654 477888889999999999


Q ss_pred             eeccccceEEEE-EecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-------CccceEEEEecCCCCcEEEEEecCCc
Q 021121          145 FKEHAYCVYNAT-WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-------HEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       145 ~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      +.+|.+-|.++- |+   +.++++|+.|.+|++||++-...+..+..       ..+.|.+++..| .+++|++|..|..
T Consensus       179 ~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dss  254 (350)
T KOG0641|consen  179 LSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSS  254 (350)
T ss_pred             ecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCc
Confidence            999999888773 43   88999999999999999998777766531       235689999999 9999999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc---cceeeeeecccceeEeEEEEeccC
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---DALVGRYDHHTEFAVGVDMSVLVE  293 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~  293 (317)
                      ..+||++.++ +++.+..|...|+++.|+|... ++.+++.|..|++-|+...   +..+.....|...+..+.|+|. +
T Consensus       255 c~lydirg~r-~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~-d  331 (350)
T KOG0641|consen  255 CMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-D  331 (350)
T ss_pred             eEEEEeeCCc-eeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc-c
Confidence            9999999876 5899999999999999999876 7999999999999998753   2233455678888999999998 7


Q ss_pred             CeEEEeecCCcEEEEecC
Q 021121          294 GLLASTGWDELVYVWQQG  311 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~  311 (317)
                      -.+++.+.|.++.+|-++
T Consensus       332 ~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  332 FSFISSSADKTATLWALN  349 (350)
T ss_pred             ceeeeccCcceEEEeccC
Confidence            789999999999999875

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.6e-32  Score=232.44  Aligned_cols=249  Identities=12%  Similarity=0.176  Sum_probs=191.2

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-----CCCceeeccCCcceE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-----ANPIRSLHEHTREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-----~~~~~~~~~~~~~v~  110 (317)
                      .+.|++|+.....   ......+|...|.+++|+|+.+.+|++|+.||.|++||+.....     ..++..+.+|...|.
T Consensus        53 ~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         53 IGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             eeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            6788999876542   12223378999999999997557999999999999999975421     123456788999999


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (317)
                      +++|+|++..++++++.|+.|++||+++++....+. +...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            999999987567899999999999999998777775 5678999999999 88999999999999999999999888988


Q ss_pred             CccceEEE-----EecCCCCcEEEEEecCC----cEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCC
Q 021121          191 HEFEILAC-----DWNKYDDCLIASASVDK----SIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       191 ~~~~v~~i-----~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      |...+.+.     .|++ ++.++++++.++    .|++||+++...++.....  +.+.+......+++. ++++|+.|+
T Consensus       208 H~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~  285 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDG  285 (568)
T ss_pred             ccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC-EEEEEECCC
Confidence            88764332     3457 778888877764    7999999976656665433  223333333344465 788999999


Q ss_pred             eEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .|++|++..+.........+..+..+++|.|.
T Consensus       286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             eEEEEEccCCcEEeecccccCCCccceEEccc
Confidence            99999998764211112225678889999996

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.7e-33  Score=233.96  Aligned_cols=247  Identities=18%  Similarity=0.212  Sum_probs=189.4

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC----------CCCCCceeeccCCcceEEEEEec-CCCCEEEEEcCCCE
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALP----------PTANPIRSLHEHTREVHSADYNP-TRRDSFITSSWDDT  130 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~  130 (317)
                      .|+....++++. .+++++.+.....|+...+          ........+.+|.+.|.+++|+| ++. +|++|+.|+.
T Consensus        22 ~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS~Dgt   99 (493)
T PTZ00421         22 NVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTASEDGT   99 (493)
T ss_pred             ccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEeCCCE
Confidence            344455555542 4455555555555553221          11111234678999999999999 555 9999999999


Q ss_pred             EEEEEcCCC-------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121          131 VKLWTVDRP-------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY  203 (317)
Q Consensus       131 v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~  203 (317)
                      |++||+.++       +.+..+.+|...|.+++|+|.+.++|++++.|+.|++||+++++....+..|...|.+++|+| 
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-  178 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-  178 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-
Confidence            999999765       346678899999999999998668999999999999999999988888989999999999999 


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc-eeEEEecCCCCeeEEee---ecCCeEEEEecccccceeeeeecc
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA-VRKVKFSPHRRNLLASC---SYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      ++.+|++++.|+.|++||+++++ .+..+.+|... +..+.|.+++..++.+|   +.|+.|++||+++..........+
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d  257 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD  257 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence            99999999999999999999876 46777788754 45788999887444333   247999999998766554444433


Q ss_pred             -cceeEeEEEEeccCCeEEEee-cCCcEEEEecCCC
Q 021121          280 -TEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMD  313 (317)
Q Consensus       280 -~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~  313 (317)
                       ...+....|+++ +.+|++++ .|+.|++|++..+
T Consensus       258 ~~~~~~~~~~d~d-~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        258 QSSALFIPFFDED-TNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCCceEEEEEcCC-CCEEEEEEeCCCeEEEEEeeCC
Confidence             334555678888 67888777 5999999999764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=5.4e-34  Score=213.20  Aligned_cols=292  Identities=18%  Similarity=0.315  Sum_probs=236.1

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC------------CC---cceeeeeecCCCCeeEEEec
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA------------AP---ALTELVAFDTADGVYDLAWS   69 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~------------~~---~~~~~~~~~~~~~v~~~~~~   69 (317)
                      .|..++++.+|||  ++.++++++.      |-.|+|.|.+..            ..   .......++|.+.|+++.|+
T Consensus       110 ~HK~~cR~aafs~--DG~lvATGsa------D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  110 SHKSPCRAAAFSP--DGSLVATGSA------DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             ecccceeeeeeCC--CCcEEEccCC------cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            3788999999999  7899998886      899999998721            00   11122345899999999999


Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe---e
Q 021121           70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF---K  146 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~  146 (317)
                      |.. .+|++|+.|++|++||+......+..+.++ ...+|.++.|+|.|. +++.|.....+++||+++.++...-   .
T Consensus       182 Pre-~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  182 PRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             chh-heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccc
Confidence            986 799999999999999998653223333333 467999999999998 9999999999999999998776544   3


Q ss_pred             ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCc-cceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHE-FEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      .|.+.|+++.+++. +++.++++.||.|++||--+.+++.++. .|. ..|.+..|.. +++++++.+.|..+++|.+.+
T Consensus       259 qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  259 QHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             ccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecC
Confidence            58889999999999 8999999999999999998888888775 343 4688999998 999999999999999999999


Q ss_pred             CCccEEEEecCC-----CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          225 YRVPIAVLNGHG-----YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       225 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      ++. +....+-+     .--+...|+....++|.---..+.+.-||.++.......--+|.+.+..+.-+|. +..+++|
T Consensus       337 ~R~-l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~-~p~FmTc  414 (430)
T KOG0640|consen  337 GRM-LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV-EPAFMTC  414 (430)
T ss_pred             Cce-EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC-CCceeee
Confidence            874 65555431     1224556777777544444456779999999988666667799999999999998 7799999


Q ss_pred             ecCCcEEEEecC
Q 021121          300 GWDELVYVWQQG  311 (317)
Q Consensus       300 ~~dg~i~~w~~~  311 (317)
                      +.|..+|+|--.
T Consensus       415 sdD~raRFWyrr  426 (430)
T KOG0640|consen  415 SDDFRARFWYRR  426 (430)
T ss_pred             cccceeeeeeec
Confidence            999999999754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.9e-33  Score=206.25  Aligned_cols=276  Identities=19%  Similarity=0.300  Sum_probs=216.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ..+.|.+++|||. ...++++++      +||+||+|+++..+. +.......|.++|.+++|+.+| ..+++|+.|+.+
T Consensus        26 P~DsIS~l~FSP~-~~~~~~A~S------WD~tVR~wevq~~g~-~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~   96 (347)
T KOG0647|consen   26 PEDSISALAFSPQ-ADNLLAAGS------WDGTVRIWEVQNSGQ-LVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQA   96 (347)
T ss_pred             cccchheeEeccc-cCceEEecc------cCCceEEEEEecCCc-ccchhhhccCCCeEEEEEccCC-ceEEeeccCCce
Confidence            4578999999995 455555555      599999999998642 3334445789999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++||+.++    ....+..|.++|.++.|-+... ..|++|+.|.+|+.||++...++.++. -.++++++..-   ..+
T Consensus        97 k~wDL~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm  168 (347)
T KOG0647|consen   97 KLWDLASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPM  168 (347)
T ss_pred             EEEEccCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc---Cce
Confidence            99999875    5556778999999999976432 378999999999999999998888887 45668888765   558


Q ss_pred             EEEEeCCCeEEEEeCCCCCceee--eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-cEEEEecCC-----
Q 021121          165 FCSASGDCTLRIWDVREMGSTMI--IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHG-----  236 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~-----  236 (317)
                      ++++..+..|.+|+++++.....  .....-.++|++..+ +....+.|+-+|.+.+..+..+.. .-..++.|.     
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            88899999999999987633221  122344688999888 777779999999999998876421 233455554     


Q ss_pred             ----CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE-EeecC
Q 021121          237 ----YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA-STGWD  302 (317)
Q Consensus       237 ----~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d  302 (317)
                          ..|++|+|+|... .|++++.||++.+||-.... .+...+.|..+|++.+|+.+ |.+++ +.|.|
T Consensus       248 ~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~-kLk~s~~~~qpItcc~fn~~-G~ifaYA~gYD  315 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDART-KLKTSETHPQPITCCSFNRN-GSIFAYALGYD  315 (347)
T ss_pred             CCceEEecceEeecccc-eEEEecCCceEEEecchhhh-hhhccCcCCCccceeEecCC-CCEEEEEeecc
Confidence                3688999999877 69999999999999977655 45677889999999999998 55544 44443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.5e-33  Score=214.56  Aligned_cols=251  Identities=24%  Similarity=0.394  Sum_probs=211.5

Q ss_pred             ceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCC--CEEEEEcCC
Q 021121           51 LTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR--DSFITSSWD  128 (317)
Q Consensus        51 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d  128 (317)
                      .+++..+.|...|.++.-.  + ..+++|+.||.+++||..    ++....+.+|.++|.+++|.....  ..|++++.|
T Consensus        96 P~pl~~~~hdDWVSsv~~~--~-~~IltgsYDg~~riWd~~----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D  168 (423)
T KOG0313|consen   96 PKPLQCFLHDDWVSSVKGA--S-KWILTGSYDGTSRIWDLK----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD  168 (423)
T ss_pred             CCccccccchhhhhhhccc--C-ceEEEeecCCeeEEEecC----CceEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence            3455666788888888877  2 589999999999999965    367888899999999998854332  269999999


Q ss_pred             CEEEEEEcCCCce----eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC------------------------
Q 021121          129 DTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR------------------------  180 (317)
Q Consensus       129 g~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------------  180 (317)
                      .++++|..+.++.    ++..++|+..|.+++..++ +..+++|+.|..|.+|+..                        
T Consensus       169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             ceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence            9999999887643    3344589999999999999 8999999999999999932                        


Q ss_pred             -CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          181 -EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       181 -~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                       ++.++..+.+|..+|.++.|++  ...+.+++.|.+|+.||+.+++. ...+. .+..+.++.++|... +|++|+.|.
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr  322 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSK-LLASGSSDR  322 (423)
T ss_pred             cccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccc-eeeecCCCC
Confidence             1235566789999999999996  66899999999999999999875 44444 345899999999887 899999999


Q ss_pred             eEEEEeccccc--ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          260 TVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       260 ~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .|++||.+++.  .+.+.+.+|...|.++.|+|.+..+|++++.|+++++||++...
T Consensus       323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            99999998865  55678899999999999999988899999999999999998754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=222.21  Aligned_cols=289  Identities=19%  Similarity=0.319  Sum_probs=221.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee--cCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF--DTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      +...|.++++.|  .+.-+++++-      |..|++||++.....++....+  .....|++++|++.++ .|++.+...
T Consensus       166 gtk~Vsal~~Dp--~GaR~~sGs~------Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~a  236 (641)
T KOG0772|consen  166 GTKIVSALAVDP--SGARFVSGSL------DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSA  236 (641)
T ss_pred             CceEEEEeeecC--CCceeeeccc------cceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCc
Confidence            345788999999  5555555554      8899999998765433333222  2345799999999985 666666677


Q ss_pred             eEEEEEeCCCCCCC---------CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEee-----cc
Q 021121           84 SVKIYDTALPPTAN---------PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFK-----EH  148 (317)
Q Consensus        84 ~i~v~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~  148 (317)
                      ..+|+|-+.....+         .+...++|...++|.+|+|..+..+++++.||++++||++..+. ...++     +.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            89999865431111         12234689999999999999998999999999999999987643 23332     23


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--ee-eeccCcc--ceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TM-IIPAHEF--EILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~-~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      .-+++.++|+|+ +++|++|..||.|.+|+.+....  .. .-..|..  .|+||.|++ ++++|++-+.|+++++||++
T Consensus       317 Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  317 RVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ccCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeecc
Confidence            447899999999 88899999999999999865422  22 2245665  899999999 99999999999999999999


Q ss_pred             CCCccEEEEecC--CCceeEEEecCCCCeeEEeeec------CCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121          224 NYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSY------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       224 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      +.+.++....+-  ..+-+.++|||+.+ +|++|..      .|.+.+||..+.+ .+..+.-....|..+.|+|. =+.
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d-~v~ki~i~~aSvv~~~Whpk-LNQ  471 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLD-TVYKIDISTASVVRCLWHPK-LNQ  471 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEecccee-eEEEecCCCceEEEEeecch-hhh
Confidence            998887765543  34567899999998 7888763      5789999988877 45666666788999999998 566


Q ss_pred             EEEeecCCcEEEE
Q 021121          296 LASTGWDELVYVW  308 (317)
Q Consensus       296 l~s~~~dg~i~~w  308 (317)
                      |..|+.||.+++|
T Consensus       472 i~~gsgdG~~~vy  484 (641)
T KOG0772|consen  472 IFAGSGDGTAHVY  484 (641)
T ss_pred             eeeecCCCceEEE
Confidence            7777778988875

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-33  Score=216.07  Aligned_cols=298  Identities=20%  Similarity=0.261  Sum_probs=226.6

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC------CCCeEEEEEcCCeE
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES------HDSLLIAAVADGSV   85 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i   85 (317)
                      .+..-|. ++.++++-.+.    ....+.+|=.+...+.+..-.-+-.+....|++|...      -.+++|.|+.+..|
T Consensus       130 e~~V~ps-DnlIl~ar~ed----dvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  130 EEQVKPS-DNLILCARNED----DVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             cceeccC-CcEEEEeeccC----CceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            3445564 55666665431    0234444444443322222222223445577787532      12699999999999


Q ss_pred             EEEEeCCCCCCCCcee------------------eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121           86 KIYDTALPPTANPIRS------------------LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE  147 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  147 (317)
                      .|||+.-.....+...                  ..+|+..|..+.|+..-++.|++|+.|.+|++||+.++++...+..
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            9999875422222221                  2368889999999988888999999999999999999999999999


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      |.+.|.++.|+|..+..+++|+.|++|.+.|.|........-...+.|-.++|.|.....++++..||+++-+|+|+...
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~  364 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK  364 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence            99999999999999999999999999999999964333333335678999999998899999999999999999999988


Q ss_pred             cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce-eeeeecccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121          228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY  306 (317)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  306 (317)
                      ++..+..|..+|.++++++.-++++++++.|+.+++|++...... +....-.-+...++++.|+-...++.||..+.++
T Consensus       365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~  444 (463)
T KOG0270|consen  365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR  444 (463)
T ss_pred             ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence            999999999999999999999999999999999999998765521 1111111123567777887666899999999999


Q ss_pred             EEecCCCC
Q 021121          307 VWQQGMDP  314 (317)
Q Consensus       307 ~w~~~~~~  314 (317)
                      |||+....
T Consensus       445 vwd~~~~~  452 (463)
T KOG0270|consen  445 VWDIFTNS  452 (463)
T ss_pred             EeecccCh
Confidence            99997653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-32  Score=209.31  Aligned_cols=249  Identities=14%  Similarity=0.215  Sum_probs=211.8

Q ss_pred             eeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           54 LVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        54 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      .....|...|.+++.+|+. +++++|+.|..-.+|++.++   .....+.+|+..|+++.|+.+|. +|++|+.+|.|+|
T Consensus        58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~g---e~~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v  132 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLV  132 (399)
T ss_pred             eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCC---cceeEecCCCCceEEEEEccCce-EEEecCCCccEEE
Confidence            3344799999999999965 79999999999999999887   67788899999999999999998 9999999999999


Q ss_pred             EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      |...++.....+...-..+.=+.|+|. ..+|++|+.||.+.+|.+.++...+.+.+|..++++=.|.| +|+.++++..
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~  210 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYD  210 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEec
Confidence            999999888888766677888999997 99999999999999999999888889999999999999999 8999999999


Q ss_pred             CCcEEEEEccCCCccEEEEe---------------------------------------------------cCCCceeEE
Q 021121          214 DKSIKIWDVRNYRVPIAVLN---------------------------------------------------GHGYAVRKV  242 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~---------------------------------------------------~~~~~v~~~  242 (317)
                      ||+|++||..+... +..+.                                                   .+...+.++
T Consensus       211 dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQP-LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             CceEEEEecCCCce-eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            99999999987653 33222                                                   011112223


Q ss_pred             E---ecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          243 K---FSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       243 ~---~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      .   ++..-+ +.|+|+-||+|.|||+....  ++..-.|+.+|+.+.|.+  ..+|++++.+|.|+.||.++++.
T Consensus       290 e~~~~ss~lp-L~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  290 ESIPSSSKLP-LAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             hhcccccccc-hhhcccccceEEEEecccch--hheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccce
Confidence            3   333334 78899999999999998764  456677889999999998  47899999999999999988754

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=9.9e-32  Score=227.59  Aligned_cols=227  Identities=17%  Similarity=0.277  Sum_probs=178.9

Q ss_pred             EEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--------eeEEeecccc
Q 021121           79 AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--------SVRTFKEHAY  150 (317)
Q Consensus        79 ~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~  150 (317)
                      |+.++.|++|+....   ..+..+.+|.+.|.+++|+|+...+|++|+.||.|++||+.++.        .+..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            566789999997654   56778899999999999999854499999999999999997642        3346778999


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA  230 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  230 (317)
                      .|.+++|+|++..++++++.|+.|++||+++++....+. +...|.+++|+| ++.+|++++.|+.|++||+++++. +.
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~-i~  203 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEI-AS  203 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcE-EE
Confidence            999999999855667899999999999999988777665 567899999999 999999999999999999998764 67


Q ss_pred             EEecCCCceeE-----EEecCCCCeeEEeeecCC----eEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEe
Q 021121          231 VLNGHGYAVRK-----VKFSPHRRNLLASCSYDM----TVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       231 ~~~~~~~~v~~-----~~~~~~~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      .+.+|.+.+..     ..|++++. +|++++.|+    .|+|||+++...++.....  +.+.+. -.+.++.+.++++|
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsG  281 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIG  281 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEE
Confidence            78888876533     23457877 577766664    7999999965444444332  223222 23445447789999


Q ss_pred             ecCCcEEEEecCCC
Q 021121          300 GWDELVYVWQQGMD  313 (317)
Q Consensus       300 ~~dg~i~~w~~~~~  313 (317)
                      +.|+.|++|++..+
T Consensus       282 kGD~tIr~~e~~~~  295 (568)
T PTZ00420        282 KGDGNCRYYQHSLG  295 (568)
T ss_pred             ECCCeEEEEEccCC
Confidence            99999999999654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=5.4e-32  Score=210.68  Aligned_cols=281  Identities=17%  Similarity=0.305  Sum_probs=230.4

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      .+.++...|  ...+..+++.      |..+.++|...... +..  ..+|...|+.+.|+|+. ..+++++.|..|+||
T Consensus       221 gi~ald~~~--s~~~ilTGG~------d~~av~~d~~s~q~-l~~--~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  221 GITALDIIP--SSSKILTGGE------DKTAVLFDKPSNQI-LAT--LKGHTKKITSVKFHKDL-DTVITASADEIIRVW  288 (506)
T ss_pred             CeeEEeecC--CCCcceecCC------CCceEEEecchhhh-hhh--ccCcceEEEEEEeccch-hheeecCCcceEEee
Confidence            456677777  3334444443      88999999887651 222  23788899999999997 589999999999999


Q ss_pred             EeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc--ccceEEEEEecCCCCeEE
Q 021121           89 DTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH--AYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~  166 (317)
                      .....   ........|.++|+.+..+|.|. ||++++.||+..+.|++++..+......  .-.+++.+|+|| +.+|.
T Consensus       289 s~~~~---s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD-gLifg  363 (506)
T KOG0289|consen  289 SVPLS---SEPTSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD-GLIFG  363 (506)
T ss_pred             ccccc---cCccccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC-ceEEe
Confidence            98765   45556778999999999999998 9999999999999999999888776542  245899999999 99999


Q ss_pred             EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-cCCCceeEEEec
Q 021121          167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFS  245 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~  245 (317)
                      +|..||.|++||+.++.....+.+|.++|..+.|+. +|.+++++++|+.|++||+|+.+. ..++. .....+.++.|.
T Consensus       364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             ccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEc
Confidence            999999999999999999999999999999999999 999999999999999999998774 33333 334579999999


Q ss_pred             CCCCeeEEeeecCCeEEEEeccccc-ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.|. +|+.++.|=.|++++-.+.+ ..+..+..|.+..+++.|... ..+++++|.|..++++.+
T Consensus       442 ~SGt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~-aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  442 QSGT-YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH-AQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCCC-eEEeecceeEEEEEecccccceeeehhhhcccccceeeeccc-ceEEeeccchhheEEeec
Confidence            9999 57777766666665533332 345667778888999999887 789999999999999865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=8.5e-34  Score=219.28  Aligned_cols=280  Identities=19%  Similarity=0.271  Sum_probs=229.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...+..+.|-+. .+.|+.++.       |..|++|+.......+.. ...+..++|+.+.|.+++ +.+++++.|+.+
T Consensus       174 h~gev~~v~~l~~-sdtlatgg~-------Dr~Ik~W~v~~~k~~~~~-tLaGs~g~it~~d~d~~~-~~~iAas~d~~~  243 (459)
T KOG0288|consen  174 HEGEVHDVEFLRN-SDTLATGGS-------DRIIKLWNVLGEKSELIS-TLAGSLGNITSIDFDSDN-KHVIAASNDKNL  243 (459)
T ss_pred             cccccceeEEccC-cchhhhcch-------hhhhhhhhcccchhhhhh-hhhccCCCcceeeecCCC-ceEEeecCCCce
Confidence            5678899999993 366666665       889999999876521111 122567789999999998 688888899999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++|++...   ....++.+|...|+++.|..... .+++|+.|.+|+.||+....+.+++. ....+..|..+   ...+
T Consensus       244 r~Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~  315 (459)
T KOG0288|consen  244 RLWNVDSL---RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDV  315 (459)
T ss_pred             eeeeccch---hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceee
Confidence            99999866   78888999999999999987765 59999999999999999988877765 34557777776   4568


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC----CCceeE
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH----GYAVRK  241 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~v~~  241 (317)
                      ++|-.|++|++||.++..+....+.+. .|+++..++ ++..+.+++.|.++.+.|+++.+. ...+.+.    ....+.
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtr  392 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTR  392 (459)
T ss_pred             eecccccceEEEeccCCceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccE-EEEeeccccccccccce
Confidence            899999999999999999998888665 899999999 999999999999999999998663 4443321    234889


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +.|||++. |+++|+.||.|+||++.+++ +...+.....  .|++++|+|. +..|++++.++.+.+|.
T Consensus       393 vvfSpd~~-YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  393 VVFSPDGS-YVAAGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eEECCCCc-eeeeccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCC-CchhhcccCCcceEecC
Confidence            99999999 79999999999999999987 3344443333  6999999998 88999999999999994

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-31  Score=198.37  Aligned_cols=245  Identities=20%  Similarity=0.326  Sum_probs=205.2

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC--CCEEEEEEc
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW--DDTVKLWTV  136 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~  136 (317)
                      ....|+++.|+++|. .+++++.|..+++||...+   +..+++..++-.+..++|..... .++.++.  |.+|+..++
T Consensus        13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEe
Confidence            467899999999994 8888899999999999877   77778887888889999977665 5666665  889999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      .+.+.++.+.+|...|++++.+|- ++.+++++.|++|++||+|..++...+.....+  .++|+| .|-++|++.....
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp-~GLifA~~~~~~~  163 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP-EGLIFALANGSEL  163 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC-CCcEEEEecCCCe
Confidence            999999999999999999999998 689999999999999999988777766544443  578999 9999999988889


Q ss_pred             EEEEEccCC-CccEEEEecC---CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee---EeEEEE
Q 021121          217 IKIWDVRNY-RVPIAVLNGH---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA---VGVDMS  289 (317)
Q Consensus       217 i~v~d~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v---~~~~~~  289 (317)
                      |++||+|+. +.|...+...   ....+.+.|+|+|+. |+.+...+.+.+.|.-++. +...+..+...-   ...+|+
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc-EeeeEeeccCCCCcceeEEEC
Confidence            999999986 4455555433   567899999999995 5566778899999998887 556666654432   577899


Q ss_pred             eccCCeEEEeecCCcEEEEecCCCCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      |+ ++++++|+.||+|.+|+++++.+
T Consensus       242 Pd-s~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  242 PD-SKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             CC-CcEEEEecCCCcEEEEEcCCCcE
Confidence            99 89999999999999999987654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-30  Score=195.58  Aligned_cols=281  Identities=18%  Similarity=0.268  Sum_probs=223.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc--CC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA--DG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg   83 (317)
                      ....|.++.|++  ++.+++++++      |..++|||...+.. ...+.  .++-++..++|.... +.++.++.  |.
T Consensus        13 ~~~~i~sl~fs~--~G~~litss~------dDsl~LYd~~~g~~-~~ti~--skkyG~~~~~Fth~~-~~~i~sStk~d~   80 (311)
T KOG1446|consen   13 TNGKINSLDFSD--DGLLLITSSE------DDSLRLYDSLSGKQ-VKTIN--SKKYGVDLACFTHHS-NTVIHSSTKEDD   80 (311)
T ss_pred             CCCceeEEEecC--CCCEEEEecC------CCeEEEEEcCCCce-eeEee--cccccccEEEEecCC-ceEEEccCCCCC
Confidence            467899999999  6777777665      78999999988752 22222  455678888888765 45666665  78


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      +|+..++...   +.++.+.+|...|++++.+|-+. .+++++.|++|++||++..++...+....  -...+|.|. +-
T Consensus        81 tIryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~-GL  153 (311)
T KOG1446|consen   81 TIRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPE-GL  153 (311)
T ss_pred             ceEEEEeecC---ceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCC-Cc
Confidence            9999999877   89999999999999999999986 99999999999999999888777665333  345689998 88


Q ss_pred             eEEEEeCCCeEEEEeCCCC--Cceeeec---cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121          164 VFCSASGDCTLRIWDVREM--GSTMIIP---AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA  238 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  238 (317)
                      ++|++.....|++||+|..  .+...+.   ......+.+.|+| +|+.++.++..+.+++.|.-.+.. ...+..+...
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~  231 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTV-KSTFSGYPNA  231 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcE-eeeEeeccCC
Confidence            9999888889999999975  3444443   3356789999999 999999999999999999998873 5666555432


Q ss_pred             e---eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          239 V---RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       239 v---~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      -   -..+|+|+++ ++++|+.||+|.+|+++++..+ ..+.+ +.+++.++.|+|. -.+++++  +..+.+|=...
T Consensus       232 ~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~~~~~~~~~~fnP~-~~mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  232 GNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKV-AVLRGPNGGPVSCVRFNPR-YAMFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             CCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEe-eEecCCCCCCccccccCCc-eeeeeec--CceEEEEeccc
Confidence            2   5788999999 7999999999999999999854 45555 7899999999996 4456655  46677776553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-31  Score=198.83  Aligned_cols=269  Identities=20%  Similarity=0.310  Sum_probs=214.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ..+.|.++.|+|. .+.++++.       +||.+++||.....    ....+.|..++.+++|.++  ..+++|+.||.|
T Consensus        12 P~d~IS~v~f~~~-~~~LLvss-------WDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~v   77 (323)
T KOG1036|consen   12 PEDGISSVKFSPS-SSDLLVSS-------WDGSLRLYDVPANS----LKLKFKHGAPLLDCAFADE--STIVTGGLDGQV   77 (323)
T ss_pred             ChhceeeEEEcCc-CCcEEEEe-------ccCcEEEEeccchh----hhhheecCCceeeeeccCC--ceEEEeccCceE
Confidence            3577999999985 55566655       39999999998764    3444578999999999985  589999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +.+|+..+    ....+..|..+|.|+.+++... .+++|+.|++|++||.+.......+.. ...|.++...   ++.|
T Consensus        78 r~~Dln~~----~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~---g~~L  148 (323)
T KOG1036|consen   78 RRYDLNTG----NEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS---GNRL  148 (323)
T ss_pred             EEEEecCC----cceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc-CceEEEEecc---CCEE
Confidence            99999875    3445667999999999998766 899999999999999987655555553 4478998876   7789


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC---ccEEEEecCC----
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR---VPIAVLNGHG----  236 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~----  236 (317)
                      ++|+.+..+.+||+++.....+..  ..+-.++|++.-| ++.-+++++-||.|.+=.+....   .....++.|.    
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK  227 (323)
T ss_pred             EEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence            999999999999999886654332  3445789999999 88888889999998876655431   1233455553    


Q ss_pred             -----CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          237 -----YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       237 -----~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                           .+|++|+|+|-.. .|+||+.||.|.+||+.+.+.+ ..+......|..++|+.+ +..||.++.
T Consensus       228 ~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl-~q~~~~~~SI~slsfs~d-G~~LAia~s  294 (323)
T KOG1036|consen  228 DTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRL-KQLAKYETSISSLSFSMD-GSLLAIASS  294 (323)
T ss_pred             CceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhh-hhccCCCCceEEEEeccC-CCeEEEEec
Confidence                 3899999999877 6999999999999999988744 555555677999999999 788888773

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5e-32  Score=197.82  Aligned_cols=247  Identities=19%  Similarity=0.267  Sum_probs=213.4

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .|...+.+++|+-+| ..|++|+.|+++.+|+++.. .........+|.+.|-.++|.|..+..+++++.|..|++||++
T Consensus        18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhcceEEEEcccC-ceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            677889999999998 69999999999999999865 2233345678999999999999988899999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      .+++........+ -.-+.|+|+ +.++++++.|..|.+.|.++.+.....+ ....+..+.|+. ++++++.....|.|
T Consensus        96 ~~k~~~~i~~~~e-ni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~-~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   96 SGKCTARIETKGE-NINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN-SNDLFFLTNGLGCV  171 (313)
T ss_pred             cCcEEEEeeccCc-ceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-CCCEEEEecCCceE
Confidence            9999988874444 456789999 8899999999999999999877666554 456688899996 78888777778999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      .|......+ ++..+.+|.....|+.|+|+|+ ++|+|+.|-.+.+||+...- +.+.+..+.-+|+.++|+.+ +++||
T Consensus       172 ~ILsypsLk-pv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELi-C~R~isRldwpVRTlSFS~d-g~~lA  247 (313)
T KOG1407|consen  172 EILSYPSLK-PVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELI-CERCISRLDWPVRTLSFSHD-GRMLA  247 (313)
T ss_pred             EEEeccccc-cccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhh-hheeeccccCceEEEEeccC-cceee
Confidence            999999766 6999999999999999999999 69999999999999998764 56778888899999999999 89999


Q ss_pred             EeecCCcEEEEecCCCC
Q 021121          298 STGWDELVYVWQQGMDP  314 (317)
Q Consensus       298 s~~~dg~i~~w~~~~~~  314 (317)
                      +++.|..|-|=++.++.
T Consensus       248 SaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGD  264 (313)
T ss_pred             ccCccceEEeEecccCC
Confidence            99999998776666554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=220.82  Aligned_cols=288  Identities=20%  Similarity=0.308  Sum_probs=238.9

Q ss_pred             ceecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCc------ceeeeeecCCCCeeEEEecCCCCCe
Q 021121            3 VFKTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPA------LTELVAFDTADGVYDLAWSESHDSL   75 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~   75 (317)
                      ++.....+.+++|-|.+... .++...       +..+..|.++.....      ...+...+|...|++++++.+. ..
T Consensus       316 ~ir~~~kiks~dv~~~~~~~~~lv~l~-------nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~  387 (888)
T KOG0306|consen  316 TIRTSAKIKSFDVTPSGGTENTLVLLA-------NNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-IL  387 (888)
T ss_pred             heechhheeEEEEEecCCcceeEEEee-------cCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-ee
Confidence            35567788899999965443 333333       668999998763211      2234455899999999999875 35


Q ss_pred             EEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEE
Q 021121           76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNA  155 (317)
Q Consensus        76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  155 (317)
                      +++| ..+.+++|+.++.   ++++++..  +.+.+..|-|.++ ++++|...|.+.+||+.+...+...++|.+.++++
T Consensus       388 ~~Sg-a~~SikiWn~~t~---kciRTi~~--~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi  460 (888)
T KOG0306|consen  388 LASG-AGESIKIWNRDTL---KCIRTITC--GYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI  460 (888)
T ss_pred             eeec-CCCcEEEEEccCc---ceeEEecc--ccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence            5554 5678999998866   77777764  4888999999887 99999999999999999999999999999999999


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCC-----Cce--------eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEc
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREM-----GST--------MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~--------~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~  222 (317)
                      +.+|+ +..+++|+.|.+|++||..-.     ...        +++ ..+..|.|+.+|| ++++|+++--|.+++||-+
T Consensus       461 ~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyfl  537 (888)
T KOG0306|consen  461 SLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFL  537 (888)
T ss_pred             eecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcC-CCcEEEEEeccCeEEEEEe
Confidence            99999 888999999999999997521     111        112 2456799999999 9999999999999999999


Q ss_pred             cCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121          223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      .+.+. ...+-+|.-||.|+..+|+++ +++|||.|.+|++|-+.-+. +...+.+|...|.++.|.|. ..++.++|.|
T Consensus       538 DtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD  613 (888)
T KOG0306|consen  538 DTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKD  613 (888)
T ss_pred             cceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence            98774 667889999999999999999 89999999999999998887 67889999999999999997 8899999999


Q ss_pred             CcEEEEecCC
Q 021121          303 ELVYVWQQGM  312 (317)
Q Consensus       303 g~i~~w~~~~  312 (317)
                      +.|+-||-..
T Consensus       614 ~kvKqWDg~k  623 (888)
T KOG0306|consen  614 GKVKQWDGEK  623 (888)
T ss_pred             ceEEeechhh
Confidence            9999998643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.9e-32  Score=211.44  Aligned_cols=287  Identities=21%  Similarity=0.282  Sum_probs=230.1

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-------------ceeeee--ecCCCCeeEEEec
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-------------LTELVA--FDTADGVYDLAWS   69 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-------------~~~~~~--~~~~~~v~~~~~~   69 (317)
                      .|..++.+++++|  ++.+..+.+.      +|.|.=|+...+...             ..+...  ..|...+.+++.+
T Consensus       140 ~H~~s~~~vals~--d~~~~fsask------~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  140 KHQLSVTSVALSP--DDKRVFSASK------DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             cccCcceEEEeec--cccceeecCC------CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            3778999999999  5666666665      889999988655421             001111  2577889999999


Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc
Q 021121           70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA  149 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  149 (317)
                      +|+ ++|++|+.|..|.||+.++.   +.+..+.+|.+.|.+++|-.... .+++++.|+.|++|+++....+.++.+|.
T Consensus       212 ~Dg-kylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetlyGHq  286 (479)
T KOG0299|consen  212 SDG-KYLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETLYGHQ  286 (479)
T ss_pred             CCC-cEEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence            998 69999999999999999877   78888999999999999986554 89999999999999999999999999999


Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI  229 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  229 (317)
                      +.|.++.-... ...+.+|+.|+++++|++.. +....+.++...+-|++|-  +...+++|+.+|.|.+|++.+.+. +
T Consensus       287 d~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkp-l  361 (479)
T KOG0299|consen  287 DGVLGIDALSR-ERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKP-L  361 (479)
T ss_pred             cceeeechhcc-cceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCc-e
Confidence            99999998876 77777788999999999943 4445667788899999998  567899999999999999988653 4


Q ss_pred             EE-EecC-----------CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---ceeeeeecccceeEeEEEEeccCC
Q 021121          230 AV-LNGH-----------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       230 ~~-~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~  294 (317)
                      .. -.+|           +.+|++++..|... ++++|+.+|.|++|.+..+-   .++..+. -.+.|++++|++++..
T Consensus       362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKR  439 (479)
T ss_pred             eEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCE
Confidence            33 2233           23899999999887 89999999999999998874   3333333 5688999999999443


Q ss_pred             eEEEeecCCcEEEEecC
Q 021121          295 LLASTGWDELVYVWQQG  311 (317)
Q Consensus       295 ~l~s~~~dg~i~~w~~~  311 (317)
                      +++..|....+--|-..
T Consensus       440 ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  440 IVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             EEEecccccccceeeEe
Confidence            66666666666555543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-31  Score=199.42  Aligned_cols=270  Identities=18%  Similarity=0.275  Sum_probs=213.5

Q ss_pred             eEEEEEecccccccCceEEEEecCCCC--------Ccceeeee-ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC
Q 021121           22 RLAVATAQNFGILGNGRVHVLDLSPAA--------PALTELVA-FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL   92 (317)
Q Consensus        22 ~~~~~~~~~~~~~~~g~i~i~~~~~~~--------~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~   92 (317)
                      +++++++       ...|.=+++....        +.+.++.. ..|...|++++.+  + .++++|+.|.+|+|||+..
T Consensus         3 ~iIvGtY-------E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k   72 (362)
T KOG0294|consen    3 EIIVGTY-------EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRK   72 (362)
T ss_pred             eEEEeee-------eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccc
Confidence            5667766       3466666665433        11222222 2688999999987  4 5999999999999999987


Q ss_pred             CCCCCCceeeccCCcceEEEEEecCC-CCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121           93 PPTANPIRSLHEHTREVHSADYNPTR-RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD  171 (317)
Q Consensus        93 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (317)
                      .   ..+..+-.|.+.|+++.|.+.. ...|++|+.||.|.+|+...-..+..+++|.+.|+.++.+|. +++.++.+.|
T Consensus        73 ~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D  148 (362)
T KOG0294|consen   73 R---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS-GKLALSVGGD  148 (362)
T ss_pred             h---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC-CceEEEEcCC
Confidence            6   6777788899999999998764 237999999999999999999999999999999999999999 8999999999


Q ss_pred             CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCee
Q 021121          172 CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (317)
                      +.++.||+-+++.-...+ .......+.|+| .|.+++.+..+ .|-+|.+.+... ...+. ....+.++.|...+  .
T Consensus       149 ~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v-~~~i~-~~~r~l~~~~l~~~--~  221 (362)
T KOG0294|consen  149 QVLRTWNLVRGRVAFVLN-LKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASV-FREIE-NPKRILCATFLDGS--E  221 (362)
T ss_pred             ceeeeehhhcCccceeec-cCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhH-hhhhh-ccccceeeeecCCc--e
Confidence            999999999887665554 233345699999 88888887755 588999887543 22222 23456677776544  5


Q ss_pred             EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec-cCCeEEEeecCCcEEEEecCCC
Q 021121          252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-VEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       252 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |++|+.|+.|.+||..+.. +...+.+|...|.++.+-.+ .+.+|+|+|.||.|+|||++.+
T Consensus       222 L~vG~d~~~i~~~D~ds~~-~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  222 LLVGGDNEWISLKDTDSDT-PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEecCCceEEEeccCCCc-cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            8899999999999998854 67889999999999985432 2569999999999999999886

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-33  Score=203.57  Aligned_cols=243  Identities=19%  Similarity=0.271  Sum_probs=207.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+...+.  +...+++...      |=+-++||.-++.    .+..+.|+.-|.+++|+.|. ++|++|+.+..+
T Consensus        58 hkgavw~~~l~~--na~~aasaaa------dftakvw~a~tgd----elhsf~hkhivk~~af~~ds-~~lltgg~ekll  124 (334)
T KOG0278|consen   58 HKGAVWSATLNK--NATRAASAAA------DFTAKVWDAVTGD----ELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLL  124 (334)
T ss_pred             cCcceeeeecCc--hhhhhhhhcc------cchhhhhhhhhhh----hhhhhhhhheeeeEEecccc-hhhhccchHHHh
Confidence            677888888877  4555555554      6678899988765    46677899999999999997 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +|||++.+  ..+...+.+|.+.|..+.|....+ .+++++.|++|++||.++++.++.+. .+.+|+++..+++ +.++
T Consensus       125 rvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~d-G~il  199 (334)
T KOG0278|consen  125 RVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQD-GRIL  199 (334)
T ss_pred             hhhhccCC--CCCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccC-CCEE
Confidence            99999865  356667889999999999988777 88888999999999999999999987 6778999999998 7766


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                       +....+.|.+||..+...++.++ ....|.+...+| +...+++|++|..++.||..++.......++|.++|.|+.|+
T Consensus       200 -Tia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS  276 (334)
T KOG0278|consen  200 -TIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS  276 (334)
T ss_pred             -EEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence             55567889999999988888876 455688999999 779999999999999999999886333358999999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEeccccc
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      |+|. +.++|+.||+|++|.+..++
T Consensus       277 PdGE-~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  277 PDGE-LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCCc-eeeccCCCceEEEEEecCCC
Confidence            9999 79999999999999987655

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-32  Score=216.66  Aligned_cols=289  Identities=16%  Similarity=0.196  Sum_probs=241.7

Q ss_pred             CceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--cceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121            2 PVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--ALTELVAFDTADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         2 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      -++.|..-|.++..|.  ..+.+.+++       .|.|+|||+.....  ....+..+...+-|+++...||| +.|++|
T Consensus       414 ~tL~HGEvVcAvtIS~--~trhVyTgG-------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivG  483 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISN--PTRHVYTGG-------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVG  483 (705)
T ss_pred             hhhccCcEEEEEEecC--CcceeEecC-------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEec
Confidence            3567888888999998  678888887       78999999976542  23344444566789999999999 588888


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (317)
                      +.-.++.|||+..+ .......+........+++.+||.+ ..+++..||.|.|||+.+...++.+++|.+.+.||..++
T Consensus       484 GeastlsiWDLAap-TprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~  561 (705)
T KOG0639|consen  484 GEASTLSIWDLAAP-TPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK  561 (705)
T ss_pred             cccceeeeeeccCC-CcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence            88999999999875 2222333444456778899999998 889999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      + +..|.+|+-|.+|+-||++++..+.... ..+.|.++.++| .+.+++.|-+++.+.+......+  ...+.-|.+.|
T Consensus       562 d-GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~--kyqlhlheScV  636 (705)
T KOG0639|consen  562 D-GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPE--KYQLHLHESCV  636 (705)
T ss_pred             C-CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccCcEEEEecCCcc--ceeecccccEE
Confidence            9 8889999999999999999988776654 567899999999 99999999999999998877654  45666799999


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      .++.|.+.|+ ++++.+.|+.+..|...-+..+.+..  ..+.|.++.++.+ +++++||+.|....+|.+.
T Consensus       637 LSlKFa~cGk-wfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~d-dkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  637 LSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFD-DKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             EEEEecccCc-eeeecCchhhhhhccCccccceeecc--ccCcceeeeeccC-ceEEEecCCCcceEEEEEe
Confidence            9999999999 79999999999999988876554333  3567999999998 8999999999999998763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=209.31  Aligned_cols=250  Identities=20%  Similarity=0.350  Sum_probs=215.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--------------CCceee-ccCCcceEEEEEecCCCCEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA--------------NPIRSL-HEHTREVHSADYNPTRRDSF  122 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--------------~~~~~~-~~~~~~v~~~~~~~~~~~~l  122 (317)
                      .|.-++.+++++|++ .+.++++.+|+|.-|++.++...              .+...- ..|...+.+++.++|++ +|
T Consensus       140 ~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-yl  217 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YL  217 (479)
T ss_pred             cccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EE
Confidence            688899999999997 69999999999999998876422              111111 37889999999999999 99


Q ss_pred             EEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121          123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK  202 (317)
Q Consensus       123 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~  202 (317)
                      ++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.. .+.+++++.|..+++|+++....+.++.+|...|..+....
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~  296 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS  296 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence            99999999999999999999999999999999999987 78888999999999999999999999999999999999887


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc---
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH---  279 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---  279 (317)
                       .++.+.+|+.|+++++|++....  ...+.++.+.+.|++|-.+.  .+++|+.+|.|.+|++...+++......|   
T Consensus       297 -reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~  371 (479)
T KOG0299|consen  297 -RERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI  371 (479)
T ss_pred             -ccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeecccccc
Confidence             78888888899999999996533  45677888899999998765  38999999999999998887554443333   


Q ss_pred             --------cceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121          280 --------TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA  316 (317)
Q Consensus       280 --------~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  316 (317)
                              ...|++++..|. .+++++|+.+|.|++|.+..+-|+
T Consensus       372 ~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  372 PELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             CCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCCccc
Confidence                    237899999997 889999999999999999988654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=201.76  Aligned_cols=291  Identities=21%  Similarity=0.323  Sum_probs=238.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |.+.|..++-...  ..++.+.+.      |.+-+||.++.+..   .....+|.+.|++++|++.+ .++++++.|++-
T Consensus       147 HkDGiW~Vaa~~t--qpi~gtASA------DhTA~iWs~Esg~C---L~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~ta  214 (481)
T KOG0300|consen  147 HKDGIWHVAADST--QPICGTASA------DHTARIWSLESGAC---LATYTGHTGSVNSIKFHNSG-LLLLTASGDETA  214 (481)
T ss_pred             cccceeeehhhcC--Ccceeeccc------ccceeEEeeccccc---eeeecccccceeeEEecccc-ceEEEccCCcch
Confidence            5666777766662  334444443      88999999998762   23334899999999999987 699999999999


Q ss_pred             EEEEe------CCC-------------------------------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC
Q 021121           86 KIYDT------ALP-------------------------------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD  128 (317)
Q Consensus        86 ~v~~~------~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  128 (317)
                      .||..      ...                               .-..++..+.+|.+.|.+..|...++ .+++++.|
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWD  293 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWD  293 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecc
Confidence            99972      110                               00124556788999999999998887 89999999


Q ss_pred             CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcE
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~  207 (317)
                      .+..+||+++++.+..+.+|....+.++-+|. .+++++.+.|.+.++||++.. ..+..+++|...|+++.|..  +..
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~  370 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDR  370 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCc-ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--CCc
Confidence            99999999999999999999999999999998 899999999999999999854 34567889999999999985  557


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---ceeeeeecccceeE
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHTEFAV  284 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~v~  284 (317)
                      +++|+.|.+|++||+++.+.++.++.. .++++.++.+..++ +++.--.+..|++||+....   .+...-++|...|.
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~  448 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVT  448 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCc-eEEeccCCceEEEEecCCCccccCCcccccccceeee
Confidence            899999999999999999999988874 56899999998887 78888888999999998654   12234568999999


Q ss_pred             eEEEEeccC-CeEEEeecCCcEEEEecCCCC
Q 021121          285 GVDMSVLVE-GLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       285 ~~~~~~~~~-~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +++|..+.. .-|+++|.|..+.-|+++.+.
T Consensus       449 c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  449 CCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeeccccCcccccccccccceeeeeEecccC
Confidence            999986421 368899999999999998753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.3e-31  Score=196.25  Aligned_cols=248  Identities=19%  Similarity=0.287  Sum_probs=197.9

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ...+.|.+++|||....++++|+.||+||+|+++......+ +....|.++|.+++|+.+|. .+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEcc
Confidence            35668999999997667888999999999999987433333 45667999999999999997 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCC--eEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      +++ ...+..|.++|..+.|-+. ..  .|++|+.|.+|+.||+|+..++.++. ....++++..   ...+++++..+.
T Consensus       103 S~Q-~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv---~~pm~vVata~r  176 (347)
T KOG0647|consen  103 SGQ-VSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV---LYPMAVVATAER  176 (347)
T ss_pred             CCC-eeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc---cCceeEEEecCC
Confidence            994 5567789999999999876 44  89999999999999999998888877 4456777654   345788888999


Q ss_pred             cEEEEEccCCCccEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc-eeeeeeccc---------ceeE
Q 021121          216 SIKIWDVRNYRVPIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-LVGRYDHHT---------EFAV  284 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~---------~~v~  284 (317)
                      .|.+|+++++....... ..-+-.++|++..++... .+.|+-+|.+.|..+..+.+ .-..++-|+         -.|+
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN  255 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN  255 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence            99999998764322222 223456899999999884 68899999999998877521 122334443         2688


Q ss_pred             eEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          285 GVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      +|+|+|. -..|+|+|.||+..+||-+...+
T Consensus       256 si~FhP~-hgtlvTaGsDGtf~FWDkdar~k  285 (347)
T KOG0647|consen  256 SIAFHPV-HGTLVTAGSDGTFSFWDKDARTK  285 (347)
T ss_pred             ceEeecc-cceEEEecCCceEEEecchhhhh
Confidence            9999998 77999999999999999765443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-32  Score=195.07  Aligned_cols=254  Identities=23%  Similarity=0.367  Sum_probs=205.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe-cCCCCEEEEEcCCCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN-PTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .|.+.|.++...--| ..|++++.|++|+|+..+.......+..+.+|.++|+.++|. |.-..+|++++.||.|.||.-
T Consensus         9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            577778777766666 699999999999999999876668888999999999999995 433349999999999999998


Q ss_pred             CCCc--eeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCC--C---
Q 021121          137 DRPT--SVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYD--D---  205 (317)
Q Consensus       137 ~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~--~---  205 (317)
                      ++++  .......|...|++++|.|.+ +-+|++++.||.|.+.+.+..   ...+....|.-.+++++|.|..  +   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8773  344556799999999999974 346888999999999998765   2334456799999999999841  2   


Q ss_pred             --------cEEEEEecCCcEEEEEccCCCcc-EEEEecCCCceeEEEecCCC---CeeEEeeecCCeEEEEecccccc--
Q 021121          206 --------CLIASASVDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHR---RNLLASCSYDMTVCLWDFMVEDA--  271 (317)
Q Consensus       206 --------~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~--  271 (317)
                              +.|++|+.|..|+||+..+.+-. -.++.+|...|+.++|.|.-   +..|++++.||++.||-.+....  
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    46999999999999999875422 23488999999999999964   34699999999999998764321  


Q ss_pred             eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ....+......+..++||+. +++|+.++.|+.+.+|.-+.+
T Consensus       248 k~tll~~f~~~~w~vSWS~s-Gn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLS-GNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cccccccCCcceEEEEEecc-ccEEEEecCCcEEEEEEeCCC
Confidence            12233445678999999999 899999999999999987665

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-32  Score=205.47  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=213.2

Q ss_pred             eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc-----eeeccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121           55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI-----RSLHEHTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      ..++.+..+.|..|+||| .+|++|+.||.|.+|+..+++-.+.+     ..+.-+..+|.|+.|+.|.. ++++|+.||
T Consensus       208 IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDG  285 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDG  285 (508)
T ss_pred             eecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCC
Confidence            345677789999999999 69999999999999999877422222     23345788999999999988 999999999


Q ss_pred             EEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE
Q 021121          130 TVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI  208 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  208 (317)
                      .|++|.+++|.+++.+. +|...|+++.|+.+ +..+++++.|.++++.-+.+++.+..+.+|.+.|+...|.+ +|..+
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~i  363 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHI  363 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeE
Confidence            99999999999999997 89999999999999 67777999999999999999999999999999999999999 99999


Q ss_pred             EEEecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec---cccee
Q 021121          209 ASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH---HTEFA  283 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~~v  283 (317)
                      ++++.||+|++|+.++.++ +.+++  +...+|.++..-|.++..++.+...+++.|-++...  +++.+..   ..+..
T Consensus       364 isaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdF  440 (508)
T KOG0275|consen  364 ISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDF  440 (508)
T ss_pred             EEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccCCce
Confidence            9999999999999998664 66554  345689999999988777888999999999987643  4444432   23455


Q ss_pred             EeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          284 VGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       284 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+.+.+|. +.+++..+.|+.++.|.+..+
T Consensus       441 i~~~lSpk-GewiYcigED~vlYCF~~~sG  469 (508)
T KOG0275|consen  441 INAILSPK-GEWIYCIGEDGVLYCFSVLSG  469 (508)
T ss_pred             EEEEecCC-CcEEEEEccCcEEEEEEeecC
Confidence            66778998 889999999999999987654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-31  Score=223.08  Aligned_cols=243  Identities=18%  Similarity=0.288  Sum_probs=197.6

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC----------------------------CC-------
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA----------------------------AP-------   49 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~----------------------------~~-------   49 (317)
                      .|...|.++.||+  +|+++|++++      ||.|+||.+...                            ..       
T Consensus       265 ah~gaIw~mKFS~--DGKyLAsaGe------D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH--DGKYLASAGE------DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             ccCCcEEEEEeCC--CCceeeecCC------CceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4788999999999  7999999998      999999998660                            00       


Q ss_pred             ----------c-----------ceeee-eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCc
Q 021121           50 ----------A-----------LTELV-AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTR  107 (317)
Q Consensus        50 ----------~-----------~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~  107 (317)
                                .           .+++. ..+|.+.|.++.|+.++  +|++++.|.+|++|++...   .++..+. |..
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~---~CL~~F~-Hnd  410 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRK---ECLKVFS-HND  410 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCc---ceeeEEe-cCC
Confidence                      0           00111 12688899999999874  9999999999999999866   6776665 999


Q ss_pred             ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee
Q 021121          108 EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI  187 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  187 (317)
                      -|+|++|+|...+++++|+-||.|+||++...+...-.. -..-|++++|.|+ |+..++|+.+|.+++|+.+..+....
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEe
Confidence            999999999888899999999999999998776655444 4577999999999 99999999999999999987765544


Q ss_pred             ec---------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC--ceeEEEecCCCCeeEEeee
Q 021121          188 IP---------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY--AVRKVKFSPHRRNLLASCS  256 (317)
Q Consensus       188 ~~---------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~  256 (317)
                      ..         .+. .|+.+.+.|.+...+++.+.|..|||||.++.. ++..++++..  .=....|+.+|+ +|++++
T Consensus       489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk-~IVs~s  565 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGK-HIVSAS  565 (712)
T ss_pred             eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCC-EEEEee
Confidence            32         123 799999999777777788899999999997744 4666665432  224678999999 699999


Q ss_pred             cCCeEEEEec
Q 021121          257 YDMTVCLWDF  266 (317)
Q Consensus       257 ~d~~i~vwd~  266 (317)
                      +|..|++|+.
T Consensus       566 eDs~VYiW~~  575 (712)
T KOG0283|consen  566 EDSWVYIWKN  575 (712)
T ss_pred             cCceEEEEeC
Confidence            9999999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.4e-31  Score=224.47  Aligned_cols=237  Identities=21%  Similarity=0.336  Sum_probs=211.3

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      +...+.+..|. +  ..+.+++.+.+|++|+...+   ..+.. +.+|.+.|+++++..- ...+++|+.|.++++||..
T Consensus       207 ~~~~~~~~q~~-~--~~~~~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  207 DDHVVLCLQLH-D--GFFKSGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCS  279 (537)
T ss_pred             Ccchhhhheee-c--CeEEecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecC
Confidence            45678888888 3  48999999999999998765   55555 8999999999999874 4499999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      ++++...+.+|.+.+.++...   +..+++|+.|.+|++|+++++..+..+.+|..+|+++..+   +.++++|+.|++|
T Consensus       280 sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTV  353 (537)
T ss_pred             CCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceE
Confidence            999999999999999999876   5578889999999999999999999999999999999985   6799999999999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      ++||+.+.+ ++..+.+|...|+++.+.+. . .+++|+.|++|++||+++...++..+.+|.+.+..+.+.   +++|+
T Consensus       354 ~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~---~~~Lv  427 (537)
T KOG0274|consen  354 KVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR---DNFLV  427 (537)
T ss_pred             EEEEhhhce-eeeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc---cceeE
Confidence            999999866 59999999999999998775 4 699999999999999999844778999999999877776   67999


Q ss_pred             EeecCCcEEEEecCCCC
Q 021121          298 STGWDELVYVWQQGMDP  314 (317)
Q Consensus       298 s~~~dg~i~~w~~~~~~  314 (317)
                      +++.|+.|++||..+.+
T Consensus       428 s~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEEGE  444 (537)
T ss_pred             eccccccEEEeecccCc
Confidence            99999999999998764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-31  Score=206.06  Aligned_cols=248  Identities=20%  Similarity=0.322  Sum_probs=207.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      +|.+.|.-+.|+++| ++||+++.|.+..+|++......+...++.+|..+|.-+.|+||.+ ++++|+.|..+.+||+.
T Consensus       222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~  299 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVD  299 (519)
T ss_pred             hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeeccCC
Confidence            789999999999999 6999999999999999987766667788999999999999999998 99999999999999999


Q ss_pred             CCceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc-cceEEEEecCCCCcEEEEEecCC
Q 021121          138 RPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE-FEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       138 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      +|.....+.. +...+.+.+|.|| +..+++|+.|+.+..||+.. ..+...++.+ ..|.+++..+ +|+++++.+.|.
T Consensus       300 tgd~~~~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  300 TGDLRHLYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDK  376 (519)
T ss_pred             cchhhhhcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC-CCcEEEEEeccc
Confidence            9988877753 3578999999999 88899999999999999874 3344444332 4589999999 999999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccC
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVE  293 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~  293 (317)
                      .|++|+..+... ..... ...+|++++.|.+++ ++++.-.+..+++||++... +++.+.+|..  .+..-+|-..+.
T Consensus       377 ~i~l~~~e~~~d-r~lis-e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  377 KIRLYNREARVD-RGLIS-EEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENK-LVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             ceeeechhhhhh-hcccc-ccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhh-HHHHhhcccccceEEEeccCCCCc
Confidence            999999887432 32333 345899999999999 67777789999999999654 6778888865  344556765545


Q ss_pred             CeEEEeecCCcEEEEecCCCC
Q 021121          294 GLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .++++|+.|+.|+||+...+.
T Consensus       453 ~fiaSGSED~kvyIWhr~sgk  473 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGK  473 (519)
T ss_pred             ceEEecCCCceEEEEEccCCc
Confidence            799999999999999987653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=8.1e-31  Score=216.15  Aligned_cols=288  Identities=16%  Similarity=0.260  Sum_probs=226.6

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC----------CCCeEEEEE
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES----------HDSLLIAAV   80 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~   80 (317)
                      .++.|+|. ...+.+..+       |..++|||+..-+..-+....+-|...|+.+.--|-          .+..+.+++
T Consensus       328 IA~~Fdet-~~klscVYn-------dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS  399 (1080)
T KOG1408|consen  328 IACQFDET-TDKLSCVYN-------DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS  399 (1080)
T ss_pred             eEEEecCC-CceEEEEEc-------CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec
Confidence            46789985 445555544       889999999877654444455578888888876651          124689999


Q ss_pred             cCCeEEEEEeCCCCCCCCc----------------------------------eeeccCCcceEEEEEecCCCCEEEEEc
Q 021121           81 ADGSVKIYDTALPPTANPI----------------------------------RSLHEHTREVHSADYNPTRRDSFITSS  126 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~  126 (317)
                      .|++|++|+++........                                  ...-...-.+.+++.+|+++ +|++|.
T Consensus       400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGD  478 (1080)
T KOG1408|consen  400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGD  478 (1080)
T ss_pred             CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccC
Confidence            9999999999863111100                                  00011234689999999998 999999


Q ss_pred             CCCEEEEEEcCCCceeEEeeccccceEEEEEecC--CCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccc---------
Q 021121          127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR--HSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFE---------  194 (317)
Q Consensus       127 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~---------  194 (317)
                      .-|.+++|++.+.+....+.+|...|.|+.|+..  +.++|++++.|..|++||.... .++.++.+|...         
T Consensus       479 r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~  558 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN  558 (1080)
T ss_pred             ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence            9999999999999999999999999999999853  3468999999999999998632 222333333333         


Q ss_pred             ----------------------------------------eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-
Q 021121          195 ----------------------------------------ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-  233 (317)
Q Consensus       195 ----------------------------------------v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-  233 (317)
                                                              ++.++..| ..+++++++.|..|+|||+.++++ .+.++ 
T Consensus       559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq-~k~FKg  636 (1080)
T KOG1408|consen  559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQ-VKSFKG  636 (1080)
T ss_pred             CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccce-eeeecc
Confidence                                                    45556666 777899999999999999999875 56665 


Q ss_pred             --cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          234 --GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       234 --~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                        +|.+..-.+...|.|- |+++...|.++.++|+.+++ ++..+.+|...|+++.|.+| -+.|++.+.||.|.||.+.
T Consensus       637 s~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgE-cvA~m~GHsE~VTG~kF~nD-CkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  637 SRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGE-CVAQMTGHSEAVTGVKFLND-CKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccch-hhhhhcCcchheeeeeeccc-chhheeecCCceEEEEECc
Confidence              4666778899999998 79999999999999999997 77899999999999999999 7899999999999999986


Q ss_pred             C
Q 021121          312 M  312 (317)
Q Consensus       312 ~  312 (317)
                      .
T Consensus       714 ~  714 (1080)
T KOG1408|consen  714 L  714 (1080)
T ss_pred             h
Confidence            4

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-31  Score=214.64  Aligned_cols=244  Identities=22%  Similarity=0.374  Sum_probs=206.4

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ...|+++.|+|  ++.+++.+..      +|.|.|||...... ...+ ...|...|-+++|..   ..+.+|+.++.|.
T Consensus       217 ~~~vtSv~ws~--~G~~LavG~~------~g~v~iwD~~~~k~-~~~~-~~~h~~rvg~laW~~---~~lssGsr~~~I~  283 (484)
T KOG0305|consen  217 EELVTSVKWSP--DGSHLAVGTS------DGTVQIWDVKEQKK-TRTL-RGSHASRVGSLAWNS---SVLSSGSRDGKIL  283 (484)
T ss_pred             CCceEEEEECC--CCCEEEEeec------CCeEEEEehhhccc-cccc-cCCcCceeEEEeccC---ceEEEecCCCcEE
Confidence            67899999999  5666666665      99999999876652 1112 123889999999992   5899999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      .+|+...+.  ....+.+|...|..++|++++. ++++|+.|+.+.|||....++...+..|...|.+++|+|....+||
T Consensus       284 ~~dvR~~~~--~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLA  360 (484)
T KOG0305|consen  284 NHDVRISQH--VVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLA  360 (484)
T ss_pred             EEEEecchh--hhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceE
Confidence            999987622  2224889999999999999998 9999999999999999888999999999999999999999889999


Q ss_pred             EEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE--ecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          167 SAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       167 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +|+  .|+.|++||..+++.+..+. ....|.++.|++ ..+.|+++  ..++.|.||+..+.+ ++..+.+|...|..+
T Consensus       361 sGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l~gH~~RVl~l  437 (484)
T KOG0305|consen  361 TGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMK-LVAELLGHTSRVLYL  437 (484)
T ss_pred             EcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccc-eeeeecCCcceeEEE
Confidence            865  59999999999998888776 567899999999 55444443  356689999999866 488899999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      +++|+|. .+++|+.|.++++|++-...
T Consensus       438 a~SPdg~-~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  438 ALSPDGE-TIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             EECCCCC-EEEEecccCcEEeccccCCC
Confidence            9999999 69999999999999987753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-30  Score=213.50  Aligned_cols=277  Identities=19%  Similarity=0.277  Sum_probs=227.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeE-EEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYD-LAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~   84 (317)
                      |...|..+++.+  +. .+++++.      ||++++|+-.... ........++.+-|.. ++|.+.....+++|+.|+.
T Consensus        13 H~~DVr~v~~~~--~~-~i~s~sR------d~t~~vw~~~~~~-~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen   13 HKSDVRAVAVTD--GV-CIISGSR------DGTVKVWAKKGKQ-YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             CccchheeEecC--Ce-EEeecCC------CCceeeeeccCcc-cccceecccCcceeeccceeccccCcceEeecccce
Confidence            677888888877  33 4455554      9999999875544 1222333356676766 8888644357999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      |.+|.....   .++..+.+|+..|.++....++.  +++||.|.++++|..  +++...+++|+..|+++...|. . .
T Consensus        83 i~v~~~~~~---~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e-~-~  153 (745)
T KOG0301|consen   83 IIVFKLSQA---EPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE-N-T  153 (745)
T ss_pred             EEEEecCCC---CchhhhhccccceeeeecCCcCc--eEecccccceEEecc--hhhhcccCCcchheeeeeecCC-C-c
Confidence            999998766   89999999999999999877764  999999999999976  4566679999999999999997 4 7


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      +++|+.|.+|++|.-  ++.++++.+|...|+.+++-+  +..+++++.||.|+.|++. ++ .+....+|..-|.++..
T Consensus       154 ~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-ge-~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-GE-VLLEMHGHTNFVYSISM  227 (745)
T ss_pred             EEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-Cc-eeeeeeccceEEEEEEe
Confidence            889999999999975  688899999999999999986  3468899999999999994 34 47888899999999997


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+++. +++++++|++++||+..   .+.+.+......|.++.+-++  .-+++|+.||.||||..+..
T Consensus       228 ~~~~~-~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~N--gDIvvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  228 ALSDG-LIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLN--GDIVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             cCCCC-eEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeC--CCEEEeccCceEEEEEeccc
Confidence            77776 79999999999999976   466667666668999998886  35888889999999998754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-32  Score=225.62  Aligned_cols=252  Identities=17%  Similarity=0.212  Sum_probs=208.5

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-cc---CCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HE---HTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ......+|..+++- ..++.++. ..+.+|.+............ ..   -...+..+.|.....++|++++..|.|.+|
T Consensus        38 ~k~~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   38 LKAKANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            34556778888876 46666654 46888887754322222221 11   123456788987666799999999999999


Q ss_pred             EcCC---CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE
Q 021121          135 TVDR---PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       135 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      |+..   .+.+..+..|+..++++.|++..+++|++|+.||.|++||++..+...++.+....|+.+.|+|..++.++++
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence            9987   5666788899999999999999999999999999999999999999888888888999999999899999999


Q ss_pred             ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .+.|.+++||+|...++...+.+|.++|.++.|+|++. +|||||.|+.|+|||+.+.+...........+|..+.|-|.
T Consensus       196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            99999999999999988999999999999999999776 89999999999999998766333333344678999999999


Q ss_pred             cCCeEEEee--cCCcEEEEecCCC
Q 021121          292 VEGLLASTG--WDELVYVWQQGMD  313 (317)
Q Consensus       292 ~~~~l~s~~--~dg~i~~w~~~~~  313 (317)
                      ....|++++  .|-.|+|||+..+
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             ccchhhhhhccccceEEEEeeccc
Confidence            777898887  5889999999764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.6e-30  Score=182.65  Aligned_cols=256  Identities=21%  Similarity=0.287  Sum_probs=207.5

Q ss_pred             cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC---------CCC---CceeeccCCcceEEEEEecC
Q 021121           50 ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP---------TAN---PIRSLHEHTREVHSADYNPT  117 (317)
Q Consensus        50 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~---------~~~---~~~~~~~~~~~v~~~~~~~~  117 (317)
                      .+..+..+.....|.+++|+|.| .+.++|++..+.+|.....-.         ...   ..+.-+.|++.|.|.+|+|.
T Consensus        22 ~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            45566666778899999999998 599999999999887543210         001   11223468999999999999


Q ss_pred             CCCEEEEEcCCCEEEEEEcCCCce-----eEEeeccccceEEEEEecC---CCCeEEEEe-CCCeEEEEeCCCCCceeee
Q 021121          118 RRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPR---HSDVFCSAS-GDCTLRIWDVREMGSTMII  188 (317)
Q Consensus       118 ~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  188 (317)
                      |. ++++|+.|.+|++..++...+     -..+..|.+.|..++|..+   ++.++++++ .|..|++-|...++....+
T Consensus       101 ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  101 GE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             cC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            98 999999999999987765432     2356778999999999754   345666654 5788999999999999999


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--C-----CCceeEEEecCCCCeeEEeeecCCeE
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--H-----GYAVRKVKFSPHRRNLLASCSYDMTV  261 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~l~~~~~d~~i  261 (317)
                      .+|.+.|.++--  .++-++++|+.|.+|++||++-... +..+..  |     .+.|.+++..|.|+ +|++|-.|...
T Consensus       180 sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc  255 (350)
T KOG0641|consen  180 SGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSC  255 (350)
T ss_pred             cCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCce
Confidence            999999887642  2678999999999999999997653 444321  1     36799999999999 89999999999


Q ss_pred             EEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          262 CLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       262 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+||++.++ .++.+..|...|.++.|+|. ..++++++.|..|++-|+..+
T Consensus       256 ~lydirg~r-~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  256 MLYDIRGGR-MIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             EEEEeeCCc-eeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccc
Confidence            999999886 77899999999999999997 789999999999999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-31  Score=217.19  Aligned_cols=285  Identities=18%  Similarity=0.235  Sum_probs=233.9

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce---eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT---ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      ++..++. .++++.+++.      ||.|++|+.........   ......|...|+.+....++ +.|++++.|-+|++|
T Consensus        29 ~Lq~da~-~~ryLfTgGR------Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   29 ALQLDAP-NGRYLFTGGR------DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVW  100 (735)
T ss_pred             hccccCC-CCceEEecCC------CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEe
Confidence            4555553 5666777775      99999999976543211   12223688899999999887 589999999999999


Q ss_pred             EeCCCCCCCCceeeccCCcceEEEEE-ecCCCCEEEEEcCCCEEEEEEcCCCce--eE--------Eee-ccccceEEEE
Q 021121           89 DTALPPTANPIRSLHEHTREVHSADY-NPTRRDSFITSSWDDTVKLWTVDRPTS--VR--------TFK-EHAYCVYNAT  156 (317)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~--------~~~-~~~~~v~~~~  156 (317)
                      +..... ..+..++..|...|.|+++ .++.. ++++|+.|+.|.+||++++..  +.        .+. ++...|++++
T Consensus       101 ~~~~~~-~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen  101 NAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             ecccCc-chhHhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            988653 4567778899999999999 56655 999999999999999997722  22        222 6778999999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG  236 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  236 (317)
                      -++. +.++++|+..+.+++||.++.+.+..+.+|...|..+..++ +|..+++++.||+|++||+...+ ++.++..|.
T Consensus       179 ~N~t-~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQr-Cl~T~~vH~  255 (735)
T KOG0308|consen  179 MNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQR-CLATYIVHK  255 (735)
T ss_pred             cCCc-ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccc-eeeeEEecc
Confidence            9998 78999999999999999999999999999999999999999 99999999999999999999865 588899999


Q ss_pred             CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ..|+++..+|+-. .+++|+.||.|..=|+++..... .+.....+|..+..+.. ++-+-+++.|+.|+-|....
T Consensus       256 e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~-~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  256 EGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEH-DNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             CceEEEeeCCCcc-eEEecCCCCcEEecccCCchhhe-EeecCCCchhhhhhccc-cCCceeeeccccceecCCcc
Confidence            9999999999988 69999999999999999865333 33334567888887765 45557778899999998764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-32  Score=235.48  Aligned_cols=303  Identities=19%  Similarity=0.371  Sum_probs=245.2

Q ss_pred             eeEEEEecCCCCeEEEEEec-cc--ccccCceEEEEecCCCCC--cceeeeeecCCCCeeEEEecCCCCC---eEEEEEc
Q 021121           10 GYSVKFSPFYESRLAVATAQ-NF--GILGNGRVHVLDLSPAAP--ALTELVAFDTADGVYDLAWSESHDS---LLIAAVA   81 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~-~~--~~~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~   81 (317)
                      --.++|+|.....+++++.. .+  ....+..+.||.++....  .++....+.....-+.++|.+.+..   +|+.|..
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence            34578999642233333221 11  112356777777764433  2456666677788999999987754   5999999


Q ss_pred             CCeEEEEEeCC---CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEE
Q 021121           82 DGSVKIYDTAL---PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNAT  156 (317)
Q Consensus        82 dg~i~v~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~  156 (317)
                      ||.|.+||...   +.....+.....|.+.|..+.|++.+.++|++|+.||.|.|||++..+.-....  ...+.|.+++
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence            99999999875   334456677789999999999999998899999999999999998765444442  2467899999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc--ceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEE
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF--EILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAV  231 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~  231 (317)
                      |+....++|++++.+|.+.|||+|..+++..+..+..  .+..++|+|.....++++++|.   .|.+||+|....+++.
T Consensus       169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~  248 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI  248 (1049)
T ss_pred             cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence            9998888999999999999999999888877765543  4778999997777888888765   5999999998889999


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +.+|...|.++.|++.+.++|++++.|+.|.+|+.++++ ++..+......+..+.|+|....++++++.||.|.|+.+.
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            999999999999999997799999999999999999987 6677777788999999999877799999999999999986


Q ss_pred             CC
Q 021121          312 MD  313 (317)
Q Consensus       312 ~~  313 (317)
                      ..
T Consensus       328 ~~  329 (1049)
T KOG0307|consen  328 GT  329 (1049)
T ss_pred             cC
Confidence            53

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=3.2e-30  Score=200.87  Aligned_cols=239  Identities=21%  Similarity=0.338  Sum_probs=209.4

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      .++.++...|.. ..+++|+.|..+.++|....   ..+..+++|...|+.+.++|+.. .+++++.|..|++|......
T Consensus       220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCC-CcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchh-heeecCCcceEEeecccccc
Confidence            468888888874 68999999999999998766   78889999999999999999987 89999999999999998888


Q ss_pred             eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--CccceEEEEecCCCCcEEEEEecCCcEE
Q 021121          141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIK  218 (317)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~  218 (317)
                      .......|..+|+.+..+|. +.+|++++.||+..+.|++++..+.....  ..-.+++.+|+| +|.+|.+|..|+.++
T Consensus       295 ~~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVK  372 (506)
T ss_pred             CccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEE
Confidence            77888899999999999999 89999999999999999999988877654  234589999999 999999999999999


Q ss_pred             EEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE
Q 021121          219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       219 v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  298 (317)
                      +||+.++. .+..+.+|.++|..++|+.+|- +|+++.+|+.|++||++..+............+.+++|.+. +.+|+.
T Consensus       373 iwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S-Gt~L~~  449 (506)
T KOG0289|consen  373 IWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS-GTYLGI  449 (506)
T ss_pred             EEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC-CCeEEe
Confidence            99999877 5889999999999999998885 89999999999999999887433222233347999999998 889999


Q ss_pred             eecCCcEEEEe
Q 021121          299 TGWDELVYVWQ  309 (317)
Q Consensus       299 ~~~dg~i~~w~  309 (317)
                      +|.|=.|++++
T Consensus       450 ~g~~l~Vy~~~  460 (506)
T KOG0289|consen  450 AGSDLQVYICK  460 (506)
T ss_pred             ecceeEEEEEe
Confidence            98777777666

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.98  E-value=3.7e-30  Score=201.72  Aligned_cols=295  Identities=17%  Similarity=0.231  Sum_probs=221.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-eeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +..+|++++|+|..+..+++++..      -|.|-+||+...++... ......|..+|.+|.|+|.+...+++.+.||+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK------~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDK------GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cccceEEEEecccCcceEEEEccC------CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            568899999999877688888876      89999999953333232 33334788999999999988889999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEeeccccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      |++-|++.. ..+.+..+......+..+.|+.+.. .++.+..=|...+||++++.. ...+..|...|.+++++|..+.
T Consensus       259 iR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  259 IRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeeeeecch-hhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            999999865 2333333444556777888988877 677777777999999998754 6667778889999999999899


Q ss_pred             eEEEEeCCCeEEEEeCCCCCce----eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc---CCCccEEEEecCC
Q 021121          164 VFCSASGDCTLRIWDVREMGST----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR---NYRVPIAVLNGHG  236 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~  236 (317)
                      ++++++.|++++|||+|+....    .....|...|.+..|+|.++. |++.+.|..|+|||..   ....+...+. |+
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn  414 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN  414 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-cc
Confidence            9999999999999999975332    334469999999999995555 8899999999999984   2223333332 32


Q ss_pred             C------ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeE-EEEeccCCeEEEeecCCcEEEEe
Q 021121          237 Y------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV-DMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       237 ~------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      .      ......|.|+.. ++++|-.-..|-|+|-..++.+..........|.++ .|+|-+..+++.++..|.|+||-
T Consensus       415 ~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  415 NRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             CcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            1      234578999877 899999888999999777653333233333355554 88998333555556788999886


Q ss_pred             cC
Q 021121          310 QG  311 (317)
Q Consensus       310 ~~  311 (317)
                      -.
T Consensus       494 ~k  495 (498)
T KOG4328|consen  494 NK  495 (498)
T ss_pred             cC
Confidence            43

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.1e-31  Score=214.79  Aligned_cols=249  Identities=22%  Similarity=0.316  Sum_probs=212.5

Q ss_pred             CCCCee---EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC---CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEE
Q 021121           59 TADGVY---DLAWSESHDSLLIAAVADGSVKIYDTALPPTA---NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK  132 (317)
Q Consensus        59 ~~~~v~---~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  132 (317)
                      +...+.   .+..+..+.++|++|+.||.|++|++......   .....++.|..-|+.+....+++ .|++++.|-+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK   98 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVK   98 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEE
Confidence            344455   55666555578999999999999998765321   23667889999999999998887 899999999999


Q ss_pred             EEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--e--------eeec-cCccceEEEE
Q 021121          133 LWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--T--------MIIP-AHEFEILACD  199 (317)
Q Consensus       133 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~v~~i~  199 (317)
                      +|+...+  -++..+..|...|.|++.-..+..++++|+-|+.|.+||++++..  +        ..+. ++..+|++++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            9999877  577888899999999999444488999999999999999997722  2        1222 6778899999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      .++ .+..+++|+..+.+++||.++.+. +..+.+|...|..+..+++|.. +++++.||+|++||+...+ ++.++..|
T Consensus       179 ~N~-t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgqQr-Cl~T~~vH  254 (735)
T KOG0308|consen  179 MNQ-TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQQR-CLATYIVH  254 (735)
T ss_pred             cCC-cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeeccccc-eeeeEEec
Confidence            999 899999999999999999999775 7788899999999999999995 8899999999999999876 66789999


Q ss_pred             cceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       280 ~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ...|.++..+|+ =..+++|+.||.|..=|+...
T Consensus       255 ~e~VWaL~~~~s-f~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  255 KEGVWALQSSPS-FTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             cCceEEEeeCCC-cceEEecCCCCcEEecccCCc
Confidence            999999999987 789999999999999888764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.98  E-value=2.6e-30  Score=198.00  Aligned_cols=253  Identities=25%  Similarity=0.459  Sum_probs=203.2

Q ss_pred             eeecCCCCeeEEEecCCCC-CeEEEEEcCCeEEEEEeCCC-------------CCCCCceeeccCCcceEEEEEecCCCC
Q 021121           55 VAFDTADGVYDLAWSESHD-SLLIAAVADGSVKIYDTALP-------------PTANPIRSLHEHTREVHSADYNPTRRD  120 (317)
Q Consensus        55 ~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~  120 (317)
                      ....|.+.++.+.-.+.++ .+.++=+..|.|+||++...             ...+++.++.+|...=+.++|+|-...
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            3446777888888777643 45555677899999998642             234677788899999999999996544


Q ss_pred             EEEEEcCCCEEEEEEcCCCce---eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccce
Q 021121          121 SFITSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG--STMIIPAHEFEI  195 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v  195 (317)
                      .+++|.--+.|++|...++.-   ...+.+|+..|..++|+|....+|++|+.||+|+|||+|.+.  .....+.|.+.|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            689998889999999988642   224557999999999999999999999999999999999873  233447899999


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc--
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA--  271 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--  271 (317)
                      +.|.|+. ...+|++|+.||+++|||+|+.+  .++..++-|..+|+++.|+|.....|++++.|..|.+||+.....  
T Consensus       306 NVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e  384 (440)
T KOG0302|consen  306 NVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE  384 (440)
T ss_pred             eeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence            9999998 66699999999999999999754  578899999999999999998877899999999999999864321  


Q ss_pred             -------------eeeeeecc--cceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          272 -------------LVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       272 -------------~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                                   +.+.+.-|  ...+..+.|+++...+|++.+.|| +.||.
T Consensus       385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                         11222333  346888999999888999999999 45554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=1.9e-30  Score=206.27  Aligned_cols=255  Identities=24%  Similarity=0.317  Sum_probs=198.9

Q ss_pred             eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceee-ccCCcceEEEEEecCCCCEEEEEcCCCE
Q 021121           53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDT  130 (317)
Q Consensus        53 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~  130 (317)
                      ++...+|...|.++++.|.| ..|++|+.|..|++||+...... ...+.+ ......|.++.|++.+. .|++.+....
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aq  237 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQ  237 (641)
T ss_pred             eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcc
Confidence            34444677889999999998 69999999999999999754211 112222 23456899999999998 6777777889


Q ss_pred             EEEEEcCCCceeEE------------eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce-eeec-----cCc
Q 021121          131 VKLWTVDRPTSVRT------------FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST-MIIP-----AHE  192 (317)
Q Consensus       131 v~iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-----~~~  192 (317)
                      .+++|-...+....            -++|...++|.+|+|.....+++++.||++++||+.+.+.. ..++     +..
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            99999764433322            25788999999999998999999999999999999876432 2332     334


Q ss_pred             cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       193 ~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      -++++++|+| ++++||+|..||.|.+|+.++...  ....-.+|..  .|+||.||++|+ +|++-+.|+++++||++.
T Consensus       318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccc
Confidence            5689999999 999999999999999999865432  2334456766  899999999999 699999999999999999


Q ss_pred             ccceeeeeecc--cceeEeEEEEeccCCeEEEeec------CCcEEEEecCC
Q 021121          269 EDALVGRYDHH--TEFAVGVDMSVLVEGLLASTGW------DELVYVWQQGM  312 (317)
Q Consensus       269 ~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~------dg~i~~w~~~~  312 (317)
                      .++++....+-  ..+-+.++|||+ .++|++|..      .|.+.+||..+
T Consensus       396 ~kkpL~~~tgL~t~~~~tdc~FSPd-~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  396 FKKPLNVRTGLPTPFPGTDCCFSPD-DKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             cccchhhhcCCCccCCCCccccCCC-ceEEEecccccCCCCCceEEEEeccc
Confidence            88666555543  335678999999 889999873      57788888654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.5e-30  Score=194.45  Aligned_cols=245  Identities=23%  Similarity=0.349  Sum_probs=217.4

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc-
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-  136 (317)
                      +|+.+|..++-.... .++.+++.|.+.+||.++.+   .++..+.+|.+.|++++|++.+. ++++++.|++-.||.. 
T Consensus       146 GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQ-PICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAA  220 (481)
T ss_pred             ccccceeeehhhcCC-cceeecccccceeEEeeccc---cceeeecccccceeeEEeccccc-eEEEccCCcchHHHHHh
Confidence            799999999987654 59999999999999999887   89999999999999999999987 9999999999999962 


Q ss_pred             -----CC------------------------------C----ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121          137 -----DR------------------------------P----TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW  177 (317)
Q Consensus       137 -----~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (317)
                           ..                              +    .++..+.+|.+.|.+..|... ++.+++++.|.+..+|
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLW  299 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceee
Confidence                 10                              0    134466788999999999987 8889999999999999


Q ss_pred             eCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec
Q 021121          178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       178 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                      |+++++.+..+.+|+...+.++-+| ..+++++.+.|.+.++||++..-..+..+.+|...|+++.|..+.+  +++|+.
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSD  376 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSD  376 (481)
T ss_pred             eeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCC
Confidence            9999999999999999999999999 9999999999999999999976667888999999999999998875  899999


Q ss_pred             CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          258 DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       258 d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |.+|++||+++-...+..+.. .++++.++.+.. ..+|+.--.+..|++||++..
T Consensus       377 DrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g-~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKG-HPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             CceEEEeeeccccCcceeeec-CCccceeEeecC-CceEEeccCCceEEEEecCCC
Confidence            999999999998877777664 567899999875 568888888899999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6e-29  Score=186.86  Aligned_cols=288  Identities=14%  Similarity=0.208  Sum_probs=217.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |...|++++|+.  +++.+++...      |+.|++|++..-...- +.+...-.-+..+.+.|.||-..+++..-...+
T Consensus        85 H~~~vt~~~FsS--dGK~lat~~~------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   85 HKKEVTDVAFSS--DGKKLATISG------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             cCCceeeeEEcC--CCceeEEEeC------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            778999999999  6777777665      9999999997643211 111111112246789999998777777777889


Q ss_pred             EEEEEeCCCCCCCCc---------eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEE
Q 021121           85 VKIYDTALPPTANPI---------RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNA  155 (317)
Q Consensus        85 i~v~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  155 (317)
                      +++|.+...+.+...         ..-+.|.-.+..+-....+. ++++++.|..|.+|+++ |+.+..+......-+..
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            999988754332211         11234666777777776666 99999999999999998 88888888777778889


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCC---C-----CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC--
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVRE---M-----GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY--  225 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~--  225 (317)
                      +.+|+ ++++++++..--|++|.+--   +     .....+++|...|..++|+| +...+++.+.||++++||..-.  
T Consensus       235 avSP~-GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  235 AVSPD-GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eeCCC-CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEe
Confidence            99999 99999999999999998632   2     34567889999999999999 9999999999999999997521  


Q ss_pred             --Ccc--EEE----EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          226 --RVP--IAV----LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       226 --~~~--~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                        +.+  +..    +....+....+.++|.++ .|+. +....++++..++++..-..-+.|+..|.+++|+++ +++++
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~-g~~~a  389 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD-GKYIA  389 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCC-CcEEe
Confidence              111  111    111223334899999998 4554 446679999999987554555679999999999999 88999


Q ss_pred             EeecCCcEEEEe
Q 021121          298 STGWDELVYVWQ  309 (317)
Q Consensus       298 s~~~dg~i~~w~  309 (317)
                      ++| |..+++..
T Consensus       390 tcG-dr~vrv~~  400 (420)
T KOG2096|consen  390 TCG-DRYVRVIR  400 (420)
T ss_pred             eec-ceeeeeec
Confidence            987 77788876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=199.57  Aligned_cols=264  Identities=17%  Similarity=0.229  Sum_probs=214.0

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ...|.+|.+.+.....   ...--+++|.+++-+|.| .+|+.|+..|.+++|.+.++   ..+..+..|-..|+|+.|+
T Consensus        60 rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~ITcL~fs  132 (476)
T KOG0646|consen   60 RPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSITCLKFS  132 (476)
T ss_pred             CccccccccCchhhhh---hhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccc---cHHHHHHhhccceeEEEEe
Confidence            4578888887654222   233467889999999998 68888889999999999988   8888889999999999999


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcC---------CCceeEEeeccccceEEEEEecC-CCCeEEEEeCCCeEEEEeCCCCCce
Q 021121          116 PTRRDSFITSSWDDTVKLWTVD---------RPTSVRTFKEHAYCVYNATWNPR-HSDVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      .|+. +|++|+.||.|.+|.+.         +.++...+..|.-+|+++...+. -...+++++.|.++++||+..+..+
T Consensus       133 ~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  133 DDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             CCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence            9998 99999999999999873         34677888999999999998765 2457899999999999999999888


Q ss_pred             eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC---------------ccEEEEecCCC--ceeEEEecCCC
Q 021121          186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR---------------VPIAVLNGHGY--AVRKVKFSPHR  248 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------~~~~~~~~~~~--~v~~~~~~~~~  248 (317)
                      .++. ....+.+++.+| .+..+.+|+.+|.|.+.++.+..               .....+.+|..  +|+|++.+-||
T Consensus       212 lti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg  289 (476)
T KOG0646|consen  212 LTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG  289 (476)
T ss_pred             EEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence            8876 567899999999 89999999999999998876433               12345667877  99999999999


Q ss_pred             CeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          249 RNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       249 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      . +|++|+.||.+.|||+.+.+ +++++....++|+.+.+.|-....+..-...-.+-.|++.
T Consensus       290 t-lLlSGd~dg~VcvWdi~S~Q-~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  290 T-LLLSGDEDGKVCVWDIYSKQ-CIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             c-EEEeeCCCCCEEEEecchHH-HHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            8 89999999999999999876 5666665778999999966522333333333444444443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.9e-29  Score=196.23  Aligned_cols=288  Identities=13%  Similarity=0.158  Sum_probs=225.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      ....|+++.|+|  ...++..++.      ||.++||.++.... .++.+.  -...+|.+.+|.|+|...+++++....
T Consensus       212 s~~~I~sv~FHp--~~plllvaG~------d~~lrifqvDGk~N~~lqS~~--l~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  212 SHGGITSVQFHP--TAPLLLVAGL------DGTLRIFQVDGKVNPKLQSIH--LEKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             CcCCceEEEecC--CCceEEEecC------CCcEEEEEecCccChhheeee--eccCccceeeecCCCceEEEecccceE
Confidence            346899999999  4555555554      99999999986543 233333  245679999999999769999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      .+.||+.+.+ ...+....++ ...+.....+++++ +|+..+..|.|.+....+++.+..++ ..+.|..++|+.+ +.
T Consensus       282 ~ysyDle~ak-~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSd-sk  357 (514)
T KOG2055|consen  282 LYSYDLETAK-VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSD-SK  357 (514)
T ss_pred             EEEeeccccc-cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecC-Cc
Confidence            9999998752 2233333333 34677788899998 99999999999999999999999887 5678999999988 78


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeeccCcc-ceEEEEecCCCCcEEEEEecCCcEEEEEccCC-----CccEEEEecCCC
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIPAHEF-EILACDWNKYDDCLIASASVDKSIKIWDVRNY-----RVPIAVLNGHGY  237 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~  237 (317)
                      .|++++.+|.|.+||+++..++..+..... .-++++.++ ++.++|+|+..|.|.|||..+.     ..|+..+..-..
T Consensus       358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence            888888999999999999988888763322 235677788 8999999999999999996532     235666666677


Q ss_pred             ceeEEEecCCCCeeEEeeec--CCeEEEEecccccceeeeeec---ccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          238 AVRKVKFSPHRRNLLASCSY--DMTVCLWDFMVEDALVGRYDH---HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      .|++++|+|+.+ +|+.+|.  ...+++--+.+.. +...+..   .-+.|++|+|+|. +.++|.|..+|.+.+|.+.
T Consensus       437 ~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~-sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  437 AITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPN-SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeeeCcchh-hhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCC-CceEEeecCCCceeeEeec
Confidence            899999999998 7877764  5678888777654 2222222   2346899999998 7899999999999999985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.97  E-value=3.8e-29  Score=185.46  Aligned_cols=287  Identities=24%  Similarity=0.386  Sum_probs=227.2

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-------CeEEEEEeCC
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-------GSVKIYDTAL   92 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~v~~~~~   92 (317)
                      .-.|++++....   .++.|.+.++++.+..+.....+.+.+.|..++-+|..+.+|+++..+       ..+.||.+..
T Consensus        26 ~icFlvgTnslK---~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe  102 (370)
T KOG1007|consen   26 HICFLVGTNSLK---EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE  102 (370)
T ss_pred             ceEEEEeccccC---CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc
Confidence            345666665322   378999999998877676666778899999999999988888888663       2478999876


Q ss_pred             CCCC------CCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEee-----ccccceEEEEEec
Q 021121           93 PPTA------NPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFK-----EHAYCVYNATWNP  159 (317)
Q Consensus        93 ~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~  159 (317)
                      +...      +.+..+. .+-+.|.|+.|.|++. .+++-. |..|.+|+++++.. ...+.     .+....++-+|+|
T Consensus       103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp  180 (370)
T KOG1007|consen  103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP  180 (370)
T ss_pred             ccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC
Confidence            4222      2333343 4556999999999887 666665 88999999988755 33332     2455678889999


Q ss_pred             C-CCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC
Q 021121          160 R-HSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       160 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      . +++.+ ....|+++..||+|+.+....+. .|...+..+.|+|....+|++|+.||.|++||.|+.+.++..+.+|..
T Consensus       181 HHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  181 HHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             CCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence            3 45555 45568999999999987766654 677889999999977889999999999999999999999999999999


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEeccccc----------------------------ceeeeeecccceeEeEEEE
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----------------------------ALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----------------------------~~~~~~~~~~~~v~~~~~~  289 (317)
                      .|+++.|+|....++.+|+.|..|.+|...+-.                            ..+.++..|+..|++++|+
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            999999999988899999999999999754310                            2235778899999999999


Q ss_pred             eccCCeEEEeecCCcEEEEecCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ...+-++|+-+.||.+.|=++..
T Consensus       340 sadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cCCCeeEEEeccCceEEeecCCh
Confidence            87677999999999998876653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.97  E-value=5.6e-29  Score=184.72  Aligned_cols=298  Identities=22%  Similarity=0.321  Sum_probs=231.4

Q ss_pred             ceecCcceeEEEEec--CCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC----CCeE
Q 021121            3 VFKTPFNGYSVKFSP--FYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH----DSLL   76 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p--~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l   76 (317)
                      .|+.+.+++++.|+.  +...++++++-..   -..++|.|..++.....+.....++|.-+++.+.|.|+.    +.+|
T Consensus        40 ~Y~ap~~lya~~Ws~~~~~~~rla~gS~~E---e~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   40 TYNAPWPLYAMNWSVRPDKKFRLAVGSFIE---EYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             EecCCCceeeeccccCCCcceeEEEeeecc---ccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            467888999999994  3345566554321   125789999988776666666778999999999999975    2356


Q ss_pred             EEEEcCCeEEEEEeCCCCCC-CCcee-----eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc---eeEEeec
Q 021121           77 IAAVADGSVKIYDTALPPTA-NPIRS-----LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT---SVRTFKE  147 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~-~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~  147 (317)
                      |+.+  ..+++|.+...+.. .+...     -..+.+++++..|+.-..+++.+++-|-+..|||++++.   ....+-+
T Consensus       117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            6553  46999998753211 11111     224678999999998888899999999999999999873   3556778


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCCCcEEEEEecC-CcEEEEEcc
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYDDCLIASASVD-KSIKIWDVR  223 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~  223 (317)
                      |..+|..++|...+.++|++.+.||.+|+||+|..+....+..   ...+...++|++.+.+++|+-..| ..|.+.|+|
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence            9999999999998788999999999999999998766554432   245788999999899999987666 469999999


Q ss_pred             CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc-----eeeeeecccceeEeEEEEeccCCeEEE
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-----LVGRYDHHTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s  298 (317)
                      .+..++..+.+|.+.|+.++|.|.....|++++.|..+.+||+.+...     ++..+. -++.|+.+.|++..+..++.
T Consensus       275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEE
Confidence            999999999999999999999999888899999999999999976431     122222 35679999999876778877


Q ss_pred             eecCCcEEE
Q 021121          299 TGWDELVYV  307 (317)
Q Consensus       299 ~~~dg~i~~  307 (317)
                      +.. .++.+
T Consensus       354 ~~~-kklei  361 (364)
T KOG0290|consen  354 CFG-KKLEI  361 (364)
T ss_pred             Eec-CeeeE
Confidence            753 44443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.2e-31  Score=200.50  Aligned_cols=242  Identities=20%  Similarity=0.276  Sum_probs=208.0

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.++|.|++=+|..-..+++|+.||.|++||+...   .+...++.|.+.|..+++..  . .+++++.|.+|+.|-+
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--T-SFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--c-ceEEecCCcceeeeec
Confidence            3799999999999986678999999999999999865   78889999999999999986  2 6899999999999998


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      +. ...+++.+ .+.+..+.-+.. .+.+++++.  .|.|||.+...++..+.-....+.++.|+|....+|++++.|+.
T Consensus       137 ~~-~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  137 DG-PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             cC-Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence            75 46666653 455777776665 778888876  48999999989999988777789999999988889999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      |.+||++.... +.... ....-+.|+|+|.+- .+++|++|..+..||++..+..+....+|.+.|.+++|+|. |+-+
T Consensus       212 IvLyD~R~~~P-l~KVi-~~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt-G~Ef  287 (433)
T KOG0268|consen  212 IVLYDLRQASP-LKKVI-LTMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT-GQEF  287 (433)
T ss_pred             eEEEecccCCc-cceee-eeccccceecCcccc-ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC-cchh
Confidence            99999999764 54433 223457899999665 58899999999999999999899999999999999999999 8899


Q ss_pred             EEeecCCcEEEEecCCC
Q 021121          297 ASTGWDELVYVWQQGMD  313 (317)
Q Consensus       297 ~s~~~dg~i~~w~~~~~  313 (317)
                      ++||.|.+|+||..+..
T Consensus       288 vsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             ccccccceEEEeecCCC
Confidence            99999999999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=7.1e-29  Score=185.50  Aligned_cols=243  Identities=19%  Similarity=0.277  Sum_probs=192.4

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .....|..+.|+|.+ ..|++++.||++++|++...   .. ...-.|..++.+++|.++.  .+++|+-||.|+.+|++
T Consensus        11 pP~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~---~l-~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPAN---SL-KLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             CChhceeeEEEcCcC-CcEEEEeccCcEEEEeccch---hh-hhheecCCceeeeeccCCc--eEEEeccCceEEEEEec
Confidence            345789999999887 57777889999999998764   22 2233589999999999864  69999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      +++.. .+..|..++.++.+++. ...+++|+.|++|++||.+.......+. ....|.++..   .++.|++|+.+..+
T Consensus        84 ~~~~~-~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v  157 (323)
T KOG1036|consen   84 TGNED-QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKV  157 (323)
T ss_pred             CCcce-eeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceE
Confidence            87654 44569999999999987 7788899999999999999755555554 3347888876   56788888999999


Q ss_pred             EEEEccCCCccEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---ceeeeeeccc---------ceeE
Q 021121          218 KIWDVRNYRVPIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHT---------EFAV  284 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~---------~~v~  284 (317)
                      .+||+|+...+.+.. ..-+..++++++.|++.. +++++-||.|.+=.+...+   .....+.-|.         -+|+
T Consensus       158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN  236 (323)
T KOG1036|consen  158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN  236 (323)
T ss_pred             EEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence            999999987655332 234568999999998774 7788999998876555442   1222344443         3799


Q ss_pred             eEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          285 GVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      +|+|+|- -+.|+|||.||.|.+||+...+|
T Consensus       237 ai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  237 AIAFHPI-HGTFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             eeEeccc-cceEEecCCCceEEEccCcchhh
Confidence            9999998 78999999999999999987654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.97  E-value=2.5e-29  Score=192.67  Aligned_cols=253  Identities=25%  Similarity=0.430  Sum_probs=197.7

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC------------Ccceeeeee-cCCCCeeEEEecC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA------------PALTELVAF-DTADGVYDLAWSE   70 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~------------~~~~~~~~~-~~~~~v~~~~~~~   70 (317)
                      ..+...+..+.-++.++..++++-++      .|+|+||++...-            ....++..+ .|...=+.++|||
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse------~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSE------NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccceeeecccCCcceeeeecc------cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence            44666777777788656666676665      8999999986421            112233333 5777889999999


Q ss_pred             CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC---ceeEEeec
Q 021121           71 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP---TSVRTFKE  147 (317)
Q Consensus        71 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~  147 (317)
                      -....|++|..-+.|++|...++.=..-...+.+|...|..++|+|.....|++|+-||+|+|||++.+   .++. .+.
T Consensus       222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kA  300 (440)
T KOG0302|consen  222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKA  300 (440)
T ss_pred             ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eec
Confidence            554578999888899999988752222334466799999999999998889999999999999999988   3333 378


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      |.+.|+.|.|+.. ..+|++|+.||+++|||+|+-   +++..++-|..+|+++.|+|.+...|++++.|..|.+||+.-
T Consensus       301 h~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  301 HNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999999999998 559999999999999999864   567788999999999999998899999999999999999863


Q ss_pred             CC---------------ccEEEEecC--CCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          225 YR---------------VPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       225 ~~---------------~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      ..               .|.+.+-.|  +..+..+.|+++-+.++++.+.|| +.||.
T Consensus       380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            21               122222234  346888999998888899999898 55553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=6.4e-28  Score=191.57  Aligned_cols=281  Identities=15%  Similarity=0.217  Sum_probs=219.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee--cCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF--DTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      .+..|....|+|. +..++++.+       .|.+.+|++..+.. .+....+  ..+.-|.|++|.++|+  +++|..+|
T Consensus       199 sne~v~~a~FHPt-d~nliit~G-------k~H~~Fw~~~~~~l-~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G  267 (626)
T KOG2106|consen  199 SNEVVFLATFHPT-DPNLIITCG-------KGHLYFWTLRGGSL-VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGG  267 (626)
T ss_pred             ccceEEEEEeccC-CCcEEEEeC-------CceEEEEEccCCce-EEEeeccccccceEEEEEEEcCCCC--EEeecCCc
Confidence            3456788999998 455566665       68999999887652 2222222  2346799999999984  89999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-----------------------
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-----------------------  140 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------------------  140 (317)
                      .|.||+....   +..+....|.+.|.+++...+|.  |++|+.|..|..||-.-.+                       
T Consensus       268 ~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di  342 (626)
T KOG2106|consen  268 NILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDI  342 (626)
T ss_pred             eEEEEeCCCc---eEEeEeeecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcE
Confidence            9999997544   44444458999999999999985  7889999999999832100                       


Q ss_pred             -----------------eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121          141 -----------------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY  203 (317)
Q Consensus       141 -----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~  203 (317)
                                       ......+|......++.+|+ .+.+++++.|+.+++|+  ..++..... ...+..|+.|+| 
T Consensus       343 ~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-  417 (626)
T KOG2106|consen  343 LVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-  417 (626)
T ss_pred             EEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-
Confidence                             00112357778899999999 88899999999999999  444444443 566889999999 


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-cccce
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-HHTEF  282 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~  282 (317)
                      .+ .++.|...|...+.|.++ +..+..... +.++++++|+|+|. +||.|+.|+.|.||.+........... .+..+
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~  493 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP  493 (626)
T ss_pred             cc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence            77 999999999999999998 434555554 88999999999999 799999999999999987764444433 34479


Q ss_pred             eEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          283 AVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       283 v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |+.+.|++| +++|.+-+.|-.|..|.-..
T Consensus       494 ithLDwS~D-s~~~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  494 ITHLDWSSD-SQFLVSNSGDYEILYWKPSE  522 (626)
T ss_pred             eEEeeecCC-CceEEeccCceEEEEEcccc
Confidence            999999999 89999999999999995443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.7e-30  Score=192.77  Aligned_cols=249  Identities=19%  Similarity=0.322  Sum_probs=203.8

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      |+|-++|.++.|+|  ...++++++.      |+.|++||+.+... .+....+....+|.++.|+|.|+ +|++|....
T Consensus       169 YDH~devn~l~FHP--re~ILiS~sr------D~tvKlFDfsK~sa-KrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp  238 (430)
T KOG0640|consen  169 YDHVDEVNDLDFHP--RETILISGSR------DNTVKLFDFSKTSA-KRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHP  238 (430)
T ss_pred             hhccCcccceeecc--hhheEEeccC------CCeEEEEecccHHH-HHHHHHhhccceeeeEeecCCCc-eEEEecCCC
Confidence            56889999999999  7888888886      99999999987552 23344456677899999999995 999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-cc-ccceEEEEEecCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EH-AYCVYNATWNPRH  161 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~-~~~v~~~~~~~~~  161 (317)
                      .+++||+++-+.......-..|.+.|+++.+++.++ +.++++.||.|++||--+++++.++. .| ...|.+..|..+ 
T Consensus       239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn-  316 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN-  316 (430)
T ss_pred             ceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC-
Confidence            999999987643333334457999999999999998 99999999999999999999988875 34 457999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccCc-----cceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEecC
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHE-----FEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      ++++++.+.|..+++|.+.+++.+..+.+..     .--+...|+. .+.+++.-. ..+.+.-||.|+.......-.+|
T Consensus       317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgH  395 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGH  395 (430)
T ss_pred             CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCC
Confidence            9999999999999999999999998886431     1123445665 555555443 45679999999987645556689


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      ++.++.+.-+|.++ .+++++.|..+++|--
T Consensus       396 n~a~R~i~HSP~~p-~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  396 NGAVRWIVHSPVEP-AFMTCSDDFRARFWYR  425 (430)
T ss_pred             CCCceEEEeCCCCC-ceeeecccceeeeeee
Confidence            99999999999999 6999999999999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-28  Score=183.06  Aligned_cols=239  Identities=17%  Similarity=0.289  Sum_probs=192.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC-CCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH-DSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~   84 (317)
                      |..++++++.+-    .++++++.      |-+|+|||+..... +  -....|.+.|+++.|.+.- .+.|++|+.||.
T Consensus        42 H~~sitavAVs~----~~~aSGss------DetI~IYDm~k~~q-l--g~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   42 HAGSITALAVSG----PYVASGSS------DETIHIYDMRKRKQ-L--GILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             cccceeEEEecc----eeEeccCC------CCcEEEEeccchhh-h--cceeccccceEEEEecCCcchhheeeecCCCc
Confidence            667888888754    67777776      88999999987652 2  2233789999999999863 237999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      |.+|+...   +..+..+++|.+.|+.++.+|.++ +.++.+.|+.++.||+-+|+.-..++- ....+.+.|+|. +.+
T Consensus       109 i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~-Gd~  182 (362)
T KOG0294|consen  109 IIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQ-GDH  182 (362)
T ss_pred             EEEEEcCC---eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCC-CCE
Confidence            99999864   488899999999999999999998 888999999999999999877666553 233455999999 777


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      ++.++.+ .|-+|.+.+.+....+. ....+.++.|.  ++..+++|..|+.|.+||... ..+...+.+|...|..+.+
T Consensus       183 F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  183 FVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFL--DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             EEEEecc-EEEEEecccHhHhhhhh-ccccceeeeec--CCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEE
Confidence            7777665 58899988766555544 23456777776  678899999999999999988 4468899999999999984


Q ss_pred             --cCCCCeeEEeeecCCeEEEEecccc
Q 021121          245 --SPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       245 --~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                        .|++. +|++++.||.|+|||++..
T Consensus       258 ~~~~~~~-~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNPEHE-YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecCCce-EEEEeccCceEEEEEcccc
Confidence              34454 8999999999999999876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.97  E-value=6.1e-29  Score=202.38  Aligned_cols=291  Identities=20%  Similarity=0.318  Sum_probs=214.9

Q ss_pred             eeEEEEecCCC-CeEEEEEecccccccCceEEEEecCCCCCcce---eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121           10 GYSVKFSPFYE-SRLAVATAQNFGILGNGRVHVLDLSPAAPALT---ELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus        10 v~~~~~~p~~~-~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      .++..|++... ..+++.+.+      +|.|.++|.......++   ......|...|.++.|.| ++..|++++.|.++
T Consensus        52 Pf~~sFs~~~n~eHiLavadE------~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~  124 (720)
T KOG0321|consen   52 PFADSFSAAPNKEHILAVADE------DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTI  124 (720)
T ss_pred             CccccccCCCCccceEEEecC------CCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCcee
Confidence            35678887543 334444444      99999999876543211   223336999999999999 77899999999999


Q ss_pred             EEEEeCCCCCCCCce--eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-----------------------
Q 021121           86 KIYDTALPPTANPIR--SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-----------------------  140 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------------------  140 (317)
                      ++||++..   ....  .+.+|...|.+++|.|..+..|++|+.||.|.|||++...                       
T Consensus       125 r~Wdvk~s---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  125 RPWDVKTS---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             eeeeeccc---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            99999875   4433  3789999999999999999999999999999999986432                       


Q ss_pred             ----eeEEeeccccceEE---EEEecCCCCeEEEEeC-CCeEEEEeCCCCCcee--------eeccC---ccceEEEEec
Q 021121          141 ----SVRTFKEHAYCVYN---ATWNPRHSDVFCSASG-DCTLRIWDVREMGSTM--------IIPAH---EFEILACDWN  201 (317)
Q Consensus       141 ----~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--------~~~~~---~~~v~~i~~~  201 (317)
                          .+.....+...|.+   +.+..| ...|++++. |+.|++||++......        .+..+   ...+.++..+
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence                01111233333444   444445 677888777 9999999999753322        12222   2346777777


Q ss_pred             CCCCcEEEEEecCCcEEEEEccCCCc-cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec
Q 021121          202 KYDDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                      . .|.+|.+.+.|+.|+.|+++.... ++..+.++..  .-..-..+|++. ++++|+.|....+|.+.+.+.....+.+
T Consensus       281 s-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~G  358 (720)
T KOG0321|consen  281 S-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLG  358 (720)
T ss_pred             C-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhC
Confidence            7 677777777799999999987643 3333433321  111234688998 6999999999999999999878888999


Q ss_pred             ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          279 HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       279 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |...|++++|.|..-.-+++++.|-.+++|++..+
T Consensus       359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999975667899999999999999543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=2.9e-27  Score=191.92  Aligned_cols=263  Identities=12%  Similarity=0.113  Sum_probs=188.0

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ++.|++||+.+..    .+..+.....+..++|+|++..++++++.++.|++||...+   +....+..+. .+..++|+
T Consensus        10 d~~v~~~d~~t~~----~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~~   81 (300)
T TIGR03866        10 DNTISVIDTATLE----VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGP-DPELFALH   81 (300)
T ss_pred             CCEEEEEECCCCc----eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCC-CccEEEEC
Confidence            8999999997654    22233344557889999998544567778899999998765   3444444433 35678999


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-eEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-TLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      |+++.++++++.++.+++||+++.+.+..+.. ...+.+++|+|+ +.+++++..++ .+.+||.++++....... ...
T Consensus        82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  158 (300)
T TIGR03866        82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR  158 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence            99883445556789999999998877776653 344788999998 78888877765 567789988766554432 334


Q ss_pred             eEEEEecCCCCcEEE-EEecCCcEEEEEccCCCccEEEEecCC-------CceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          195 ILACDWNKYDDCLIA-SASVDKSIKIWDVRNYRVPIAVLNGHG-------YAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       195 v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      ..+++|+| +++.++ ++..++.|++||+++.+. +..+..+.       .....++|+|+++.++++.+.++.+.+||.
T Consensus       159 ~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       159 PRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             ccEEEECC-CCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence            57899999 777765 445689999999998653 33332111       123468899999964555566778999999


Q ss_pred             ccccceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEecCCCC
Q 021121          267 MVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQQGMDP  314 (317)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~~  314 (317)
                      ++.+ +.... .+...+.+++|+|+ +++|+++ +.+|.|++||+....
T Consensus       237 ~~~~-~~~~~-~~~~~~~~~~~~~~-g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       237 KTYE-VLDYL-LVGQRVWQLAFTPD-EKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCc-EEEEE-EeCCCcceEEECCC-CCEEEEEcCCCCeEEEEECCCCc
Confidence            8765 33333 23456899999999 6677665 579999999998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-28  Score=180.66  Aligned_cols=206  Identities=16%  Similarity=0.212  Sum_probs=188.4

Q ss_pred             eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       101 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      .+++|..+++.+.++.+|. +|++++.|....+|-..+|+.+.++.+|.+.|+++..+-+ ...+++|+.|.++++||..
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcC
Confidence            3678999999999999998 9999999999999999899999999999999999999988 8899999999999999999


Q ss_pred             CCCceeeeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCC------CccEEEEecCCCceeEEEecCCCC
Q 021121          181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNY------RVPIAVLNGHGYAVRKVKFSPHRR  249 (317)
Q Consensus       181 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~  249 (317)
                      +++.+..++ ...+|..+.|++ ++++++....+     +.|.++|++..      +.|...+..+.+.++.+.|.|.++
T Consensus        83 tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   83 TGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            999999987 567899999999 88888877643     57999999842      346777888889999999999999


Q ss_pred             eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       250 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                       +|++|..||.|.+||+++++..+...+.|...|+.|+++++ ..++++++.|.+-++||+.+
T Consensus       161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC-cceEEecccCccceeeeccc
Confidence             79999999999999999998888899999999999999999 89999999999999999875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.5e-31  Score=217.02  Aligned_cols=247  Identities=24%  Similarity=0.375  Sum_probs=217.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      .-.+++|+.....         .|...+.++..-..+ ..+++|+.|..+.+|.+...   ..+..+.+|..+|.++.|+
T Consensus        13 ~t~Lr~~~~~~~~---------~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~   79 (825)
T KOG0267|consen   13 ATKLRVWDTREFV---------AHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFD   79 (825)
T ss_pred             eeccccccchhhh---------hhhhhhceeeeeccc-eeeccCCCceeeccccccCC---chhheeeccCCcceeeecC
Confidence            5577788766432         466778888775554 68999999999999998765   6666789999999999999


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI  195 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  195 (317)
                      +... +|++|+.+|+|++||+++.+.++++.+|...+.++.|+|. +.+++.|+.|+.+.+||.+...+...+.+|...+
T Consensus        80 ~~E~-LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~-~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   80 TSER-LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY-GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV  157 (825)
T ss_pred             cchh-hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc-eEEeccccccccceehhhhccCceeeecCCccee
Confidence            9987 9999999999999999999999999999999999999999 8899999999999999999999999999999999


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      ..++|+| +|.+++.+++|..+++||...++. ...+..|...+..+.|+|..- ++++|+.|+++++||+++-+ ++..
T Consensus       158 ~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe-~I~s  233 (825)
T KOG0267|consen  158 DVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFE-VISS  233 (825)
T ss_pred             EEEeecC-CCceeeccCCcceeeeeccccccc-ccccccccccccccccCchhh-hhccCCCCceeeeeccceeE-Eeec
Confidence            9999999 999999999999999999998764 788899999999999999876 89999999999999999876 5666


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      .......|.+..|+|+ +..+++|...
T Consensus       234 ~~~~~~~v~~~~fn~~-~~~~~~G~q~  259 (825)
T KOG0267|consen  234 GKPETDGVRSLAFNPD-GKIVLSGEQI  259 (825)
T ss_pred             cCCccCCceeeeecCC-ceeeecCchh
Confidence            6666888999999998 6777776544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.2e-29  Score=193.24  Aligned_cols=255  Identities=20%  Similarity=0.308  Sum_probs=201.4

Q ss_pred             eEEEEecC-----CCCeEEEEEecccccccCceEEEEecCCCCCcceee------------------eeecCCCCeeEEE
Q 021121           11 YSVKFSPF-----YESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL------------------VAFDTADGVYDLA   67 (317)
Q Consensus        11 ~~~~~~p~-----~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~------------------~~~~~~~~v~~~~   67 (317)
                      .|++|...     ..+.+++.+..      +..|.|||+.-....+..+                  ...+|...|.+++
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtm------dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls  250 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTM------DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS  250 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEecc------CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence            45555442     23445555544      7799999997433211111                  1125778889999


Q ss_pred             ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121           68 WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE  147 (317)
Q Consensus        68 ~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  147 (317)
                      |+..-.+.||+|+.|.+|.+||+.++   ++...+..|...|.++.|+|.....|++|+.|++|.+.|.+........-.
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            99887789999999999999999987   788888889999999999999888999999999999999985433332223


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      ..+.|..++|.|.....+++++.||.|+-+|+|+. +++.+++.|..+|.++++++....++++++.|+.+++|++....
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            56789999999998899999999999999999987 88999999999999999999889999999999999999987644


Q ss_pred             ccEEE-EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121          227 VPIAV-LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG  274 (317)
Q Consensus       227 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  274 (317)
                      ..... ..-.-+...|.++.|+-..+++.|+..+.++|||+.+.....+
T Consensus       408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            21111 1111124678888898887899999999999999988764443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.7e-30  Score=198.21  Aligned_cols=244  Identities=20%  Similarity=0.265  Sum_probs=204.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .|.+.+..+.|-++. ..|++|+.|..|++|+.... ......++.+..++|+.+.|.+++. .+++++.|+.+++|++.
T Consensus       173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVD  249 (459)
T ss_pred             ccccccceeEEccCc-chhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCc-eEEeecCCCceeeeecc
Confidence            478889999999986 48999999999999998765 3456777888889999999999998 88899999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      ..+...++.+|++.|+++.|... ...+++|+.|.+|++||+....+..++- ..+.+..|+.+   ...+++|..|++|
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKV  324 (459)
T ss_pred             chhhhhhhcccccceeeehhhcc-ccceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccce
Confidence            99999999999999999999987 4448899999999999999877766654 33445666654   4578999999999


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc----cceeEeEEEEeccC
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH----TEFAVGVDMSVLVE  293 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~  293 (317)
                      ++||.+.... ......++ .|+++..++++.. |.+++.|.++.+.|+++.+ +...+...    ....+.+.|||+ +
T Consensus       325 RfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd-~  399 (459)
T KOG0288|consen  325 RFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPD-G  399 (459)
T ss_pred             EEEeccCCce-eeEeecCc-ceeeEeeccCCeE-EeeecCCCceeeeeccccc-EEEEeeccccccccccceeEECCC-C
Confidence            9999998764 66666555 8999999999996 6666999999999999876 33333321    234889999999 8


Q ss_pred             CeEEEeecCCcEEEEecCCCC
Q 021121          294 GLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .++++||.||.|+||++.+++
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             ceeeeccCCCcEEEEEccCce
Confidence            999999999999999998753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-27  Score=201.63  Aligned_cols=267  Identities=12%  Similarity=0.230  Sum_probs=212.6

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      +.|...-+.++|.|  ++.++++++.      ||.|++|+..........+.  .+...|.+++-.  + ..|++|+.++
T Consensus        10 yaht~G~t~i~~d~--~gefi~tcgs------dg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~--s-~~f~~~s~~~   76 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP--DGEFICTCGS------DGDIRKWKTNSDEEEPETID--ISGELVSSIACY--S-NHFLTGSEQN   76 (933)
T ss_pred             hhccCceEEEEEcC--CCCEEEEecC------CCceEEeecCCcccCCchhh--ccCceeEEEeec--c-cceEEeeccc
Confidence            55777788999999  6778888886      99999999876632222222  156667777655  3 4899999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      +|.+|.+..+   ..-..+....-++.+++|+.+|. +++.|+.|-.|++.++.+....+.+++|.++|.++.|+|. ++
T Consensus        77 tv~~y~fps~---~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~-~~  151 (933)
T KOG1274|consen   77 TVLRYKFPSG---EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK-GN  151 (933)
T ss_pred             eEEEeeCCCC---CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-CC
Confidence            9999999877   33333444567899999999998 9999999999999999999999999999999999999999 99


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeeccC--------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIPAH--------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-  234 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-  234 (317)
                      +|++.+-||.|++||++++....++.+-        ...+..++|+| ++..++....|+.|++|+............. 
T Consensus       152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~  230 (933)
T KOG1274|consen  152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL  230 (933)
T ss_pred             EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence            9999999999999999998776665421        34567899999 6666666777999999999887753333222 


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      +...+..++|+|+|+ |||+++.||.|.|||+.+-+.     ......|.+++|.|+ .+.+
T Consensus       231 ~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~-~n~i  285 (933)
T KOG1274|consen  231 SSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPN-ANAI  285 (933)
T ss_pred             cccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh-----ccccceeEEEecCCC-CCee
Confidence            344589999999999 799999999999999987331     233567999999998 4433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.4e-28  Score=202.04  Aligned_cols=238  Identities=21%  Similarity=0.369  Sum_probs=203.9

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE-EEEecCCCCEEEEEcCCCEEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS-ADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      .+|...|..++..+.  ..+++++.||++++|+-..+ .......+.+|.+-|.. +++.+..+..+++|+.|.+|.+|.
T Consensus        11 ~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             ccCccchheeEecCC--eEEeecCCCCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence            378889999998865  38999999999999996543 34444567778888877 888764444699999999999999


Q ss_pred             cCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      ..+..++..+++|+..|.++....+ +. +++|+.|.++++|-..  +....+++|...|.++..-| ++ .+++|+.|.
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~~-~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDK  161 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGED-GT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADK  161 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCCc-Cc-eEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcc
Confidence            9999999999999999999997765 44 8899999999999754  55666899999999999998 55 899999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      +|++|.-   ...+.++.+|...|+.+++-|++.  +++++.||.|++|++ +++ ++.++.+|...|++++..++ +..
T Consensus       162 tIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge-~l~~~~ghtn~vYsis~~~~-~~~  233 (745)
T KOG0301|consen  162 TIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGE-VLLEMHGHTNFVYSISMALS-DGL  233 (745)
T ss_pred             eeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCc-eeeeeeccceEEEEEEecCC-CCe
Confidence            9999975   335889999999999999999875  889999999999998 454 67899999999999996666 789


Q ss_pred             EEEeecCCcEEEEecC
Q 021121          296 LASTGWDELVYVWQQG  311 (317)
Q Consensus       296 l~s~~~dg~i~~w~~~  311 (317)
                      ++++|.|++++||+..
T Consensus       234 Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEEecCCceEEEeecC
Confidence            9999999999999976

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=9.9e-28  Score=200.83  Aligned_cols=290  Identities=20%  Similarity=0.249  Sum_probs=228.9

Q ss_pred             CceecC-cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121            2 PVFKTP-FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         2 ~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      .+|+++ .+|++++|.-|+...+ +++..      .|.+-+||++...  +.....-.|.+.|....|.|.. ..+++++
T Consensus       238 ~sFk~d~g~VtslSFrtDG~p~l-as~~~------~G~m~~wDLe~kk--l~~v~~nah~~sv~~~~fl~~e-pVl~ta~  307 (910)
T KOG1539|consen  238 MSFKQDWGRVTSLSFRTDGNPLL-ASGRS------NGDMAFWDLEKKK--LINVTRNAHYGSVTGATFLPGE-PVLVTAG  307 (910)
T ss_pred             EEEEccccceeEEEeccCCCeeE-EeccC------CceEEEEEcCCCe--eeeeeeccccCCcccceecCCC-ceEeecc
Confidence            467886 8999999999644443 33332      7999999998775  3333333577788888888865 5888888


Q ss_pred             cCCeEEEEEeCCCC-----------------------------------------------------C------------
Q 021121           81 ADGSVKIYDTALPP-----------------------------------------------------T------------   95 (317)
Q Consensus        81 ~dg~i~v~~~~~~~-----------------------------------------------------~------------   95 (317)
                      .|+.+++|-.+.+.                                                     .            
T Consensus       308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~  387 (910)
T KOG1539|consen  308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV  387 (910)
T ss_pred             CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence            88888877555210                                                     0            


Q ss_pred             -------CCCc--------------------------------------ee-----eccCCcceEEEEEecCCCCEEEEE
Q 021121           96 -------ANPI--------------------------------------RS-----LHEHTREVHSADYNPTRRDSFITS  125 (317)
Q Consensus        96 -------~~~~--------------------------------------~~-----~~~~~~~v~~~~~~~~~~~~l~~~  125 (317)
                             ..++                                      ..     ++.....+++++.++-|+ +.+.|
T Consensus       388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG  466 (910)
T KOG1539|consen  388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIG  466 (910)
T ss_pred             cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEe
Confidence                   0000                                      00     011225678888888887 88999


Q ss_pred             cCCCEEEEEEcCCCceeEEe---eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121          126 SWDDTVKLWTVDRPTSVRTF---KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK  202 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~  202 (317)
                      ...|.|-+|++++|-....+   ..|.++|+.++.... ++.+++++.+|.+.+||..+...+..+. ....+.++..+.
T Consensus       467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr  544 (910)
T KOG1539|consen  467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR  544 (910)
T ss_pred             ccCCeEEEEEcccCeeecccccCccccCceeEEEecCC-CceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee
Confidence            99999999999999888887   579999999999887 7889999999999999999887777665 456788888888


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF  282 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  282 (317)
                       ...+++.+..|-.|+++|..+.+ .++.+.+|...|+.++|||+|+ +|++++.|++|++||+.++. ++-.+ .-..+
T Consensus       545 -~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~-lID~~-~vd~~  619 (910)
T KOG1539|consen  545 -VSDLLAIALDDFSIRVVDVVTRK-VVREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTGT-LIDGL-LVDSP  619 (910)
T ss_pred             -hhhhhhhhcCceeEEEEEchhhh-hhHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCcc-eeeeE-ecCCc
Confidence             78889999999999999999865 4888999999999999999999 79999999999999999987 33333 23577


Q ss_pred             eEeEEEEeccCCeEEEeecC-CcEEEEec
Q 021121          283 AVGVDMSVLVEGLLASTGWD-ELVYVWQQ  310 (317)
Q Consensus       283 v~~~~~~~~~~~~l~s~~~d-g~i~~w~~  310 (317)
                      .+.+.|+|+ +++|||...| .-|++|--
T Consensus       620 ~~sls~SPn-gD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  620 CTSLSFSPN-GDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ceeeEECCC-CCEEEEEEecCceEEEEEc
Confidence            899999999 8999999988 67999963

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-27  Score=177.84  Aligned_cols=253  Identities=23%  Similarity=0.342  Sum_probs=196.4

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-CCCCCceeeccCCcceEEEEEe-cCCCCEEEEEcCCCEEEEEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP-PTANPIRSLHEHTREVHSADYN-PTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd  135 (317)
                      +|..-|.++.|.+.| +.+|+|+.|++|+|||...+ .........+.|.+.|..+.|. |.-.+.+++++.|+++.||.
T Consensus        11 ~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             CCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            677889999999998 69999999999999996543 3445566778999999999995 44344999999999999997


Q ss_pred             cCCC---------ceeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCCcee------eec-------cCc
Q 021121          136 VDRP---------TSVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMGSTM------IIP-------AHE  192 (317)
Q Consensus       136 ~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~------~~~-------~~~  192 (317)
                      -...         ....++....+.|+.+.|.|.. +-.+++++.||.+|||+.-..-.+.      .+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            5211         1233555667889999999963 4578899999999999876432221      122       355


Q ss_pred             cceEEEEecCC--CCcEEEEEecC-----CcEEEEEccCCC---ccEEEEecCCCceeEEEecCCCC---eeEEeeecCC
Q 021121          193 FEILACDWNKY--DDCLIASASVD-----KSIKIWDVRNYR---VPIAVLNGHGYAVRKVKFSPHRR---NLLASCSYDM  259 (317)
Q Consensus       193 ~~v~~i~~~~~--~~~~l~~~~~d-----~~i~v~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~  259 (317)
                      .+..|+.|+|.  ...+|+.|+.+     +.++||......   ..+..+.+|..+|+.++|.|+-.   ++||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67789999873  35678888766     478888776543   12455778999999999999642   3799999999


Q ss_pred             eEEEEeccccc-------------------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          260 TVCLWDFMVED-------------------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       260 ~i~vwd~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       |+||.+....                   ..+..+.+|.+.|..+.|+-. +..|++.|.||.||+|+....
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt-GtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT-GTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee-eeEEeecCCCceeeehhhhhh
Confidence             9999987411                   345678899999999999998 889999999999999987643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-28  Score=178.32  Aligned_cols=253  Identities=20%  Similarity=0.275  Sum_probs=198.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecC--CCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE--SHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg   83 (317)
                      |.+.|..+...-. ..+++.+++       |+.|+|+...+..+........+|.++|..++|..  .| .+||+++.||
T Consensus        10 H~D~IHda~lDyy-gkrlATcsS-------D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg   80 (299)
T KOG1332|consen   10 HEDMIHDAQLDYY-GKRLATCSS-------DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDG   80 (299)
T ss_pred             hhhhhhHhhhhhh-cceeeeecC-------CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence            5566666665552 345555544       99999999988775333444458999999999975  56 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCC---ceeEEeeccccceEEEEEec
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRP---TSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~  159 (317)
                      .|.||.-..+ ..........|...|++++|.|.+- ..|++++.||.|.+.+.++.   ...+....|.-.|++++|.|
T Consensus        81 kVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   81 KVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             eEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            9999997765 6666667788999999999998742 37889999999999998765   23344567899999999998


Q ss_pred             CC-------------CCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCC---CcEEEEEecCCcEEEEE
Q 021121          160 RH-------------SDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYD---DCLIASASVDKSIKIWD  221 (317)
Q Consensus       160 ~~-------------~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~v~d  221 (317)
                      ..             .+.|++|+.|..|+||+..++  +....+.+|...|+.++|.|..   ...|+++++||++.||.
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence            51             146999999999999999875  3345588999999999999943   35899999999999998


Q ss_pred             ccCCCc--cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          222 VRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       222 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .+....  ....+......+..+.||+.|. +|+.++.|+.+.+|.-...
T Consensus       240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             ecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCCC
Confidence            774322  2233455677899999999998 8999999999999975443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-27  Score=200.38  Aligned_cols=288  Identities=19%  Similarity=0.229  Sum_probs=229.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC-CCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA-DGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +...|+++.=+|. -+.++++..       +|+|.++++..++    .+..+.+. +.|+.++|..||..++++|+..|.
T Consensus       201 ~~s~IT~ieqsPa-LDVVaiG~~-------~G~ViifNlK~dk----il~sFk~d~g~VtslSFrtDG~p~las~~~~G~  268 (910)
T KOG1539|consen  201 FFSRITAIEQSPA-LDVVAIGLE-------NGTVIIFNLKFDK----ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD  268 (910)
T ss_pred             cccceeEeccCCc-ceEEEEecc-------CceEEEEEcccCc----EEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence            4578999999994 345555554       9999999999876    45566675 899999999999999999999999


Q ss_pred             EEEEEeCCCCCCCCceee-ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeeccccceEEEEEec
Q 021121           85 VKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~  159 (317)
                      +.+||++..   +.+... ..|.+.|....|.|..+ .+++++.|..+++|-.+++    +.++.-.+|..+..++.|.-
T Consensus       269 m~~wDLe~k---kl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~  344 (910)
T KOG1539|consen  269 MAFWDLEKK---KLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG  344 (910)
T ss_pred             EEEEEcCCC---eeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence            999999865   444444 47889999999999877 9999999999998866644    44555568999999999986


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCC----------------------------------------------------------
Q 021121          160 RHSDVFCSASGDCTLRIWDVRE----------------------------------------------------------  181 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~----------------------------------------------------------  181 (317)
                      ..+..+.+++.|++++.+++..                                                          
T Consensus       345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~  424 (910)
T KOG1539|consen  345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA  424 (910)
T ss_pred             cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence            5578888888888777776531                                                          


Q ss_pred             -------CCc-eeeec-----cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE---ecCCCceeEEEec
Q 021121          182 -------MGS-TMIIP-----AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL---NGHGYAVRKVKFS  245 (317)
Q Consensus       182 -------~~~-~~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~  245 (317)
                             ... ...+.     .....+++++.++ .|++.+.|...|.|-+|+++++-. ...+   ..|..+|+.++..
T Consensus       425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D  502 (910)
T KOG1539|consen  425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVD  502 (910)
T ss_pred             EEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEec
Confidence                   000 00000     1124578888998 899999999999999999998754 4444   5799999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEeccccc----------------------------------------ceeeeeecccceeEe
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVED----------------------------------------ALVGRYDHHTEFAVG  285 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~~v~~  285 (317)
                      ..++ ++++++.+|.+++||.....                                        .+++.+.+|...|++
T Consensus       503 ~~n~-~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  503 GTNR-LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD  581 (910)
T ss_pred             CCCc-eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence            8887 79999999999999987532                                        233566789999999


Q ss_pred             EEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          286 VDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       286 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ++|||+ ++.|++++.|++|++||+.+.
T Consensus       582 ~~FS~D-grWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  582 MTFSPD-GRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             eEeCCC-CcEEEEeecCCcEEEEeccCc
Confidence            999999 899999999999999999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=4.7e-28  Score=196.01  Aligned_cols=285  Identities=18%  Similarity=0.207  Sum_probs=230.0

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |.+.|.+++..|  .+..+++++.      ||+|+||.+.++.    .+......+.|.|++|+|.+...+++......+
T Consensus       399 Htg~Vr~iSvdp--~G~wlasGsd------DGtvriWEi~TgR----cvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  399 HTGLVRSISVDP--SGEWLASGSD------DGTVRIWEIATGR----CVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             cCCeEEEEEecC--CcceeeecCC------CCcEEEEEeecce----EEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence            788999999999  8999999987      9999999999875    455556777899999999876655555555555


Q ss_pred             EEEEeCCCC----------------------------------CCCCceeeccCCcceEEEEEecCCCCEEEEEcCC---
Q 021121           86 KIYDTALPP----------------------------------TANPIRSLHEHTREVHSADYNPTRRDSFITSSWD---  128 (317)
Q Consensus        86 ~v~~~~~~~----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  128 (317)
                      .|.+..-+.                                  ...-++....|..+|..+.|+..|. +|++...+   
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~  545 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGN  545 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCc
Confidence            555433220                                  0001123345788999999999998 88887653   


Q ss_pred             CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI  208 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  208 (317)
                      ..|.|.++.......-|+...+.|.++.|+|. ..+|++++ ...|++||+...+.+..+......|.+++.+| .|..|
T Consensus       546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl  622 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL  622 (733)
T ss_pred             ceEEEEecccccccCchhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence            57999999887766677667788999999998 56665655 45799999998888888777778899999999 89999


Q ss_pred             EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc------cc--ceeeeeeccc
Q 021121          209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV------ED--ALVGRYDHHT  280 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~------~~--~~~~~~~~~~  280 (317)
                      +.|+.|+.+..||+.-...+.+.+.-|...+++++|++.-+ ++++|+.||++.|+--.-      .-  .++..+.+|.
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            99999999999999988888999999999999999999988 899999999999884221      11  3456777887


Q ss_pred             ce----eEeEEEEeccCCeEEEeecCCcEEEE
Q 021121          281 EF----AVGVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       281 ~~----v~~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                      ..    |....|+|. .-.|+++|.||+|++|
T Consensus       702 ~~~~~gVLd~~wHP~-qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  702 KTNDLGVLDTIWHPR-QPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecccceEeecccCC-CceEEecCCCceEEee
Confidence            65    889999998 7899999999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=6.9e-27  Score=185.73  Aligned_cols=288  Identities=15%  Similarity=0.176  Sum_probs=224.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ....|.+++||+.+.+.++++....    .+..+.+||.+.+.. ..++.  ..++.|....|+|.+++++++.+ .|.+
T Consensus       153 f~~GV~~vaFsk~~~G~~l~~vD~s----~~h~lSVWdWqk~~~-~~~vk--~sne~v~~a~FHPtd~nliit~G-k~H~  224 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLLCAVDDS----NPHMLSVWDWQKKAK-LGPVK--TSNEVVFLATFHPTDPNLIITCG-KGHL  224 (626)
T ss_pred             ccccceeeeecccCCCceEEEecCC----Cccccchhhchhhhc-cCcce--eccceEEEEEeccCCCcEEEEeC-CceE
Confidence            3457899999998888888887632    256789999987652 22232  35677999999999988888876 5789


Q ss_pred             EEEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ..|+.+.+.-.+....++.+ +..|.|++|.++|.  +++|..+|.|.||+..+.+..+....|.+.|.+++...+ +.+
T Consensus       225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~-Gtl  301 (626)
T KOG2106|consen  225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD-GTL  301 (626)
T ss_pred             EEEEccCCceEEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC-ccE
Confidence            99998876433334444433 46799999999986  999999999999999888877777799999999999987 655


Q ss_pred             EEEEeCCCeEEEEeCCCCC-----------ce-----------------------------eeeccCccceEEEEecCCC
Q 021121          165 FCSASGDCTLRIWDVREMG-----------ST-----------------------------MIIPAHEFEILACDWNKYD  204 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~-----------~~-----------------------------~~~~~~~~~v~~i~~~~~~  204 (317)
                      + +|+.|..|..||-.-.+           .+                             ....+|......++.+| +
T Consensus       302 l-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s  379 (626)
T KOG2106|consen  302 L-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-S  379 (626)
T ss_pred             e-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-C
Confidence            5 69999999999932100           00                             11124566678888999 8


Q ss_pred             CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV  284 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~  284 (317)
                      .+++++++.|+.+++|+  ..+ +.... .-..++.++.|+|.|  .++.|...|...+.|.++.. ++..... ..+++
T Consensus       380 ~~q~~T~gqdk~v~lW~--~~k-~~wt~-~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~-lv~~~~d-~~~ls  451 (626)
T KOG2106|consen  380 KNQLLTCGQDKHVRLWN--DHK-LEWTK-IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD-LVTIHTD-NEQLS  451 (626)
T ss_pred             hhheeeccCcceEEEcc--CCc-eeEEE-EecCceeEeeccCcc--eEEEeeccceEEEEecccce-eEEEEec-CCceE
Confidence            88999999999999999  223 23332 245678999999999  59999999999999999854 4444444 88999


Q ss_pred             eEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          285 GVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      .++|+|+ +.+||.|+.|+.|++|.++.+.+
T Consensus       452 ~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  452 VVRYSPD-GAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             EEEEcCC-CCEEEEecCCCeEEEEEECCCCc
Confidence            9999999 89999999999999999988765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=1.1e-27  Score=178.37  Aligned_cols=290  Identities=18%  Similarity=0.276  Sum_probs=224.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC------ccee------eeeecCCCCeeEEEecCCCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP------ALTE------LVAFDTADGVYDLAWSESHD   73 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~------~~~~------~~~~~~~~~v~~~~~~~~~~   73 (317)
                      |...|.+++..|. .++++++++.      ||.|.+||++....      ..+.      ...-.|+-.|..+.|-|-+.
T Consensus        42 HgGsvNsL~id~t-egrymlSGga------dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   42 HGGSVNSLQIDLT-EGRYMLSGGA------DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CCCccceeeeccc-cceEEeecCC------CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            6788999999997 7788888776      99999999986541      0111      11224677899999999776


Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC--CCEEEEEcCCCEEEEEEcCCCceeEEeeccccc
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR--RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC  151 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  151 (317)
                      .++.+++.|.+++|||..+-   +....++ -.+.|.+-+++|-.  ..++++|..+-.|++.|+.+|...+.+.+|...
T Consensus       115 GmFtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             ceeecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            79999999999999998765   3433443 46778888888753  237888888999999999999999999999999


Q ss_pred             eEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-Cceee--------------eccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          152 VYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMI--------------IPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~--------------~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      |.++.|+|...-.|++|+.||.|++||++.- .+...              -..|.+.++.++|.. ++.++++++.|..
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r  269 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDR  269 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccc
Confidence            9999999998889999999999999999854 22221              235777899999998 9999999999999


Q ss_pred             EEEEEccCCCccEEEEe--cCCCce---eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          217 IKIWDVRNYRVPIAVLN--GHGYAV---RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      +++|+..+++..+..+-  .|+..+   ..+. +-+.. .++---.++.+.++++-.++ .+..+..|...|.+..+-|+
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs-~ir~l~~h~k~i~c~~~~~~  346 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGS-FVRRLSTHLKRINCAAYRPD  346 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCce-EEEeeecccceeeEEeecCc
Confidence            99999988765333321  122111   1122 22223 34444456889999998887 67888999888999999988


Q ss_pred             cCCeEEEeecCCcEEEEecC
Q 021121          292 VEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~  311 (317)
                       =+.+.+|..|+.+..|-..
T Consensus       347 -fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  347 -FEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             -hhhhhccccCCcccccccc
Confidence             6789999999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.1e-28  Score=207.20  Aligned_cols=251  Identities=21%  Similarity=0.341  Sum_probs=206.0

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC--CC------------cc-eeeeeecCCCCeeEEEec
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA--AP------------AL-TELVAFDTADGVYDLAWS   69 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~--~~------------~~-~~~~~~~~~~~v~~~~~~   69 (317)
                      +|...|.|+.|+|  ++..++++++      |+.|.||+....  ..            .. ......+|...|..++|+
T Consensus        67 ~h~~sv~CVR~S~--dG~~lAsGSD------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   67 DHDGSVNCVRFSP--DGSYLASGSD------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             cccCceeEEEECC--CCCeEeeccC------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            4788999999999  7888998887      889999998831  10            11 122334799999999999


Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-
Q 021121           70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-  148 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-  148 (317)
                      |++ .+|++++.|++|.+|+..+.   +.+..+.+|.+.|..+.|.|-|+ +|++-+.|++|++|++.+-...+.+..+ 
T Consensus       139 p~~-~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  139 PDD-SLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             CCc-cEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccch
Confidence            987 69999999999999998765   88889999999999999999999 9999999999999998776666665543 


Q ss_pred             -----ccceEEEEEecCCCCeEEEEe----CCCeEEEEeCCCCCceeeeccCccceEEEEecCC----C--------C--
Q 021121          149 -----AYCVYNATWNPRHSDVFCSAS----GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY----D--------D--  205 (317)
Q Consensus       149 -----~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~----~--------~--  205 (317)
                           ...+..+.|+|| +++|++.-    ...++.|.+-.+.+.-..+-+|..++.+++|+|.    .        .  
T Consensus       214 ~~~~~~T~f~RlSWSPD-G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~  292 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPD-GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC  292 (942)
T ss_pred             hhCCCcceeeecccCCC-cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence                 335789999999 88888753    2346888887777778888999999999999983    1        1  


Q ss_pred             --cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          206 --CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       206 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                        ..+|+|+.|++|.||.....+..+....-.+..|..++|+|+|- .|+++|.||+|.+..++..+
T Consensus       293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHH
Confidence              17899999999999999776644444444567899999999998 58889999999999987643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.2e-27  Score=190.93  Aligned_cols=284  Identities=19%  Similarity=0.250  Sum_probs=227.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      .+.+|.+++|+.. .+.++++-.       +|.|.||++...- ..+.....+....|.+++|++.+  .|++.+.+|.|
T Consensus        24 ~Ps~I~slA~s~k-S~~lAvsRt-------~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i   92 (691)
T KOG2048|consen   24 KPSEIVSLAYSHK-SNQLAVSRT-------DGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSI   92 (691)
T ss_pred             eccceEEEEEecc-CCceeeecc-------CCcEEEEccCCCc-eeeEEEecCCCCceeeEEEccCC--eEEeecCCceE
Confidence            4688999999995 455555544       9999999998753 23333333667789999999654  78888899999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE--EeeccccceEEEEEecCCCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  163 (317)
                      .-||+.+.   ++........+.|++++.+|.+. .++.|+.||.+..++...++...  .+...++++.++.|+|+ +.
T Consensus        93 ~EwDl~~l---k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-~~  167 (691)
T KOG2048|consen   93 TEWDLHTL---KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-GT  167 (691)
T ss_pred             EEEecccC---ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC-cc
Confidence            99999876   77778888899999999999987 89999999988888887765443  34456789999999999 88


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeec--------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIP--------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      .+++|+.||.|++||...+..+....        ....-|.++.+-  ....|++|...|+|.+||...+.. ++.+..|
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTL-iqS~~~h  244 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTL-IQSHSCH  244 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcch-hhhhhhh
Confidence            89999999999999999887666221        122336777776  455899999999999999998774 7888899


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccc---eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .+.|.+++..+++. .+++++.|+.|.-|...+.+.   .......|...|.+++..+   ..+++||.|..+.+=....
T Consensus       245 ~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  245 DADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             hcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccc
Confidence            99999999999988 588899999988888776643   3445667888899999985   4899999999988766554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.96  E-value=5.9e-28  Score=182.13  Aligned_cols=290  Identities=17%  Similarity=0.268  Sum_probs=218.2

Q ss_pred             ecCcceeEEEEec----CCCCeEEEEEecccccccCceEEEEecCCCC--CcceeeeeecCCCCeeEEEecCC---CCCe
Q 021121            5 KTPFNGYSVKFSP----FYESRLAVATAQNFGILGNGRVHVLDLSPAA--PALTELVAFDTADGVYDLAWSES---HDSL   75 (317)
Q Consensus         5 ~~~~~v~~~~~~p----~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~---~~~~   75 (317)
                      ++..+++.++|++    +..+.++.++        ..++.+|+.....  ..++.....++.+....++|+-+   ++-+
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG--------~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~  107 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVG--------GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPF  107 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeC--------CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCee
Confidence            3668899999996    2234444444        3488899887655  22333333357788888999753   3458


Q ss_pred             EEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---ccccce
Q 021121           76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---EHAYCV  152 (317)
Q Consensus        76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v  152 (317)
                      +|+|+.-|.|+|.|+...   +....+.+|...|+.+.+.|+..+++++++.|..|++|++++..++..+.   +|.+.|
T Consensus       108 la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             EEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            999999999999999876   77888999999999999999999999999999999999999999988874   689999


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee----------------------------eeccCccceEEEEecCCC
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM----------------------------IIPAHEFEILACDWNKYD  204 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~i~~~~~~  204 (317)
                      .++.|+++ +..+++++.|.+|++|++...+...                            +-.-|...|-|+.|-   
T Consensus       185 LSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---  260 (385)
T KOG1034|consen  185 LSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---  260 (385)
T ss_pred             EEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---
Confidence            99999999 7899999999999999998321100                            011245556666653   


Q ss_pred             CcEEEEEecCCcEEEEEccCCCcc-------------EEEEecCCCceeE--EEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVP-------------IAVLNGHGYAVRK--VKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~-------------~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ++++++-+-++.|..|.....+..             +..+.-....|+-  .+|.|-++ +|+.|...|.|.+||++..
T Consensus       261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCC
Confidence            578888888999999987322211             1222223334444  45567777 7999999999999999988


Q ss_pred             cceeee-ee--cccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          270 DALVGR-YD--HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       270 ~~~~~~-~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ++.... +.  .....|...+|+.+ +.+|+...+|+.|.-||.-
T Consensus       340 ep~~~ttl~~s~~~~tVRQ~sfS~d-gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  340 EPPKCTTLTHSKSGSTVRQTSFSRD-GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCccCceEEeccccceeeeeeeccc-CcEEEEEeCCCcEEEEEee
Confidence            753222 22  22457999999999 8899999999999999863

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.4e-27  Score=186.41  Aligned_cols=265  Identities=14%  Similarity=0.182  Sum_probs=204.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEE-ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLA-WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      ...+.+||+.++....+-....  ...-.++. ..+  +..+++-.....+.+|.+....   ......--.++|.+++-
T Consensus        17 ~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l~~--~yllsaq~~rp~l~vw~i~k~~---~~~q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   17 PINCIVWDLRTGTSLLQYKGSY--LAQAASLTALNN--EYLLSAQLKRPLLHVWEILKKD---QVVQYIVLPGPVHALAS   89 (476)
T ss_pred             CcceeEEecCCCceeEEecCcc--cccchhhhhhch--hheeeecccCccccccccCchh---hhhhhcccccceeeeec
Confidence            4569999999876322221110  11111111 222  2344444455689999987542   22223335788999999


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC---------CCCce
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR---------EMGST  185 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~  185 (317)
                      +|.|. +++.|+-.|.|++|.+.+|..+..+.+|-..|+++.|+.+ +.+|++|+.||.|.+|++.         +.++.
T Consensus        90 ~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen   90 SNLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             CCCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence            99997 8888879999999999999999999999999999999998 8999999999999999874         34677


Q ss_pred             eeeccCccceEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121          186 MIIPAHEFEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vw  264 (317)
                      ..+..|.-+|+.+...+. ....+++++.|.++++||+..+.. +..+. ....+.+++.+|..+ .++.|+.+|.|.+.
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~-~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER-VVYIGTEEGKIFQN  244 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc-EEEecCCcceEEee
Confidence            888899999999988763 356899999999999999998764 33333 456899999999998 69999999999988


Q ss_pred             eccccc---------------ceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          265 DFMVED---------------ALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       265 d~~~~~---------------~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ++....               .....+.+|..  .|++++.+.| +.+|++|+.||.++|||+...
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D-gtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD-GTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC-ccEEEeeCCCCCEEEEecchH
Confidence            775432               23455668877  9999999999 899999999999999998764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3e-27  Score=176.04  Aligned_cols=252  Identities=19%  Similarity=0.304  Sum_probs=196.1

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC---------C---ceeeccCCcceEEEEEecCCCCEEEEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN---------P---IRSLHEHTREVHSADYNPTRRDSFITS  125 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~---------~---~~~~~~~~~~v~~~~~~~~~~~~l~~~  125 (317)
                      .|.+.|+++...+....++++|+.||.|.+||++.....+         +   ...-.+|+-.|.++.|.|-...++.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            5889999999999777899999999999999998753211         1   112246888999999999877799999


Q ss_pred             cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC--CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121          126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH--SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY  203 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~  203 (317)
                      +.|.++++||.++.+....++ .++.|++-+++|-.  ..++++|..+-.|++.|+.++.....+.+|...|.++.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            999999999999988888776 56779998998852  247888899999999999999999999999999999999998


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCccEEE--------------EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRVPIAV--------------LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .+-.|++|+.||.|++||++...-+...              -..|.+.|..++|+.++. ++++.+.|..+++|+..++
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccC
Confidence            8888999999999999999865322222              345778899999999999 5888899999999999887


Q ss_pred             cceeeeee-------cccc-eeEe-----EEEEeccCC-eEEEeecCCcEEEEecC
Q 021121          270 DALVGRYD-------HHTE-FAVG-----VDMSVLVEG-LLASTGWDELVYVWQQG  311 (317)
Q Consensus       270 ~~~~~~~~-------~~~~-~v~~-----~~~~~~~~~-~l~s~~~dg~i~~w~~~  311 (317)
                      +.....+.       .|.+ .+.+     +.+-|.++. .|++......|+.|+..
T Consensus       279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence            62222111       0100 1111     223344222 56666667778888876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.96  E-value=6.3e-28  Score=191.37  Aligned_cols=272  Identities=16%  Similarity=0.210  Sum_probs=207.7

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT  117 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  117 (317)
                      .+++||......... ........++..+.|+......++..+.|..+++|.-... ..+....-......-.|++....
T Consensus        13 ~~kl~D~s~~~~~~~-~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~   90 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSE-YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQ   90 (673)
T ss_pred             ceEEeecccccCccc-cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhc
Confidence            899999987653222 2222334459999999865222333345778888874432 11111111111223344444444


Q ss_pred             CCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-ccceE
Q 021121          118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-EFEIL  196 (317)
Q Consensus       118 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~  196 (317)
                      .. ++++|+..+.|+|||++...+.+.++.|...|+++.++-. ..+|++++..|.|.+..+.++.....+... ...++
T Consensus        91 S~-y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   91 SL-YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             ce-eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            44 9999999999999999987788889999999999999987 889999999999999999988777676644 34567


Q ss_pred             EEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee
Q 021121          197 ACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       197 ~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  276 (317)
                      -+.|+|....+|.+++.+|.|.+||+............|..+...++|+|.+..+|++.+.|..|.+||.+... ....+
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l  247 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRL  247 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-cccee
Confidence            89999977788889999999999999987765666778999999999999999899999999999999998765 33333


Q ss_pred             ecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121          277 DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA  316 (317)
Q Consensus       277 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  316 (317)
                      . ...+...++|+++ +.+|++|...|.|..||++..+..
T Consensus       248 ~-y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  248 T-YSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             e-ecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCC
Confidence            3 2457899999999 899999999999999999986543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.9e-27  Score=176.91  Aligned_cols=247  Identities=19%  Similarity=0.284  Sum_probs=195.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ++.. -.|+.|++-| .+||+|+.+|.|.|||+.+.   ..-+.+.+|..+|++++|+++|+ .|++++.|..|.+||+.
T Consensus        22 d~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   22 DNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             cCCc-cceEEeccCc-ceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEecc
Confidence            4444 7899999998 69999999999999999876   66777889999999999999998 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecC----------------------------------------------CCCeEEEEeCC
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPR----------------------------------------------HSDVFCSASGD  171 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------------~~~~l~~~~~d  171 (317)
                      .|.+++.++ ..++|+...|+|.                                              .++++++|...
T Consensus        96 ~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen   96 KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence            998777664 3344444444332                                              27889999999


Q ss_pred             CeEEEEeCCCCCceeeeccCc-cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc--------EEEEe--cCCCcee
Q 021121          172 CTLRIWDVREMGSTMIIPAHE-FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP--------IAVLN--GHGYAVR  240 (317)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------~~~~~--~~~~~v~  240 (317)
                      |.+.++|..+.+++..++-.. ..|.++.++. .+..|+.-+.|..||.|+++....+        .+.+.  -...+-.
T Consensus       175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk  253 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK  253 (405)
T ss_pred             ceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence            999999999998888877555 6789999998 9999999999999999998742111        01111  0123446


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      +++|+.+|.+++++......++||.-..+. +++.+.+.. .....+.|+|- ...+++- ..|.+++|.....+.
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs-LVKILhG~kgE~l~DV~whp~-rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGS-LVKILHGTKGEELLDVNWHPV-RPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcc-eeeeecCCchhheeecccccc-eeeeeec-cCCceEEEEeecccc
Confidence            889999999655555566789999988776 778888877 67889999997 4556665 789999999876554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-27  Score=188.07  Aligned_cols=268  Identities=20%  Similarity=0.257  Sum_probs=215.9

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      -.+.++.|+.  .+.++++...     +|..+++|.-....+....+... ....-.|++..... .++++|+..+.|+|
T Consensus        35 pg~~s~~w~~--~n~lvvas~~-----gdk~~~~~~K~g~~~~Vp~~~k~-~gd~~~Cv~~~s~S-~y~~sgG~~~~Vki  105 (673)
T KOG4378|consen   35 PGDFSFNWQR--RNFLVVASMA-----GDKVMRIKEKDGKTPEVPRVRKL-TGDNAFCVACASQS-LYEISGGQSGCVKI  105 (673)
T ss_pred             Ccceeeeccc--cceEEEeecC-----CceeEEEecccCCCCccceeecc-ccchHHHHhhhhcc-eeeeccCcCceeee
Confidence            3478899998  4435544433     38899999866553323333222 22233444444444 69999999999999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-ceEEEEEecCCCCeEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-CVYNATWNPRHSDVFC  166 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~  166 (317)
                      ||++..   ...+.+++|...|+++.++.... +|++++..|.|.|..+.++.....+....+ .|.-+.|+|....+|.
T Consensus       106 wdl~~k---l~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~  181 (673)
T KOG4378|consen  106 WDLRAK---LIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS  181 (673)
T ss_pred             hhhHHH---HHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence            999854   66677889999999999998877 999999999999999999988878875534 4568999998778899


Q ss_pred             EEeCCCeEEEEeCCCCCceeee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          167 SASGDCTLRIWDVREMGSTMII-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      +++.+|.|.+||+....++..+ ..|..+...|+|+|.++.+|++.+.|..|.+||.+..+. ...+. ...+...++|+
T Consensus       182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~  259 (673)
T KOG4378|consen  182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFS  259 (673)
T ss_pred             eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-cceee-ecCCcceeeec
Confidence            9999999999999988777654 578999999999998899999999999999999997543 33333 34588999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      ++|. +|++|...|.|..||++..+.++.....|...|++++|-|.
T Consensus       260 ~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  260 ECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             CCce-EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            9998 79999999999999999999899999999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-28  Score=212.04  Aligned_cols=260  Identities=18%  Similarity=0.338  Sum_probs=212.6

Q ss_pred             ceecCcceeEEEEecCCCCe--EEEEEecccccccCceEEEEecCCC--CCcceee-eeecCCCCeeEEEecCCCCCeEE
Q 021121            3 VFKTPFNGYSVKFSPFYESR--LAVATAQNFGILGNGRVHVLDLSPA--APALTEL-VAFDTADGVYDLAWSESHDSLLI   77 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~--~~~~~~~~~~~~~~g~i~i~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~   77 (317)
                      ++.....-+.++|.+..++.  +++++.+      ||.|.+||...-  +.....+ ....|.+.|..+.|++..+++||
T Consensus        60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~e------dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA  133 (1049)
T KOG0307|consen   60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLE------DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA  133 (1049)
T ss_pred             cccccccceeeeecccCCCccceeecccc------CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee
Confidence            34556677899999965443  5666665      999999998762  2222222 22369999999999999878999


Q ss_pred             EEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc--ceEEE
Q 021121           78 AAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY--CVYNA  155 (317)
Q Consensus        78 ~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~  155 (317)
                      +|+.||.|.|||+.+.+...... -....+.|.+++|+..-.+.|++++.+|.+.|||++..+.+..+..+..  .+..+
T Consensus       134 SGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l  212 (1049)
T KOG0307|consen  134 SGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL  212 (1049)
T ss_pred             ccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence            99999999999998753222211 2335688999999988877999999999999999999888877765544  47899


Q ss_pred             EEecCCCCeEEEEeCCC---eEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121          156 TWNPRHSDVFCSASGDC---TLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      +|+|++...+++++.|.   .|.+||+|.- .+++.+.+|...|.++.|++.|..++++++.|+.|.+|+.++++. +..
T Consensus       213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-l~~  291 (1049)
T KOG0307|consen  213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-LGE  291 (1049)
T ss_pred             eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-eee
Confidence            99999888888888765   4999999875 566777899999999999998889999999999999999999775 777


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      +.....++..+.|+|....++++++.||.|.|+.+....
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            777888999999999999889999999999999987654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.2e-26  Score=190.72  Aligned_cols=293  Identities=23%  Similarity=0.328  Sum_probs=230.8

Q ss_pred             ecCcceeEEEEecCCCC-eEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEecCCCCCeEEEE
Q 021121            5 KTPFNGYSVKFSPFYES-RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~-~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      .|.+-|+++.|+|  .+ .++.++.       |.++.+|.-.+...........    +...+-...-|+|++ +.+++-
T Consensus       265 GHeDWV~sv~W~p--~~~~LLSASa-------DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~  334 (764)
T KOG1063|consen  265 GHEDWVYSVWWHP--EGLDLLSASA-------DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAH  334 (764)
T ss_pred             CcccceEEEEEcc--chhhheeccc-------CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEe
Confidence            4788999999999  56 4555544       8899999987664333333333    234468889999998 588888


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc----eeEEeeccccceEEE
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNA  155 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~  155 (317)
                      +..|-.++|..+............+|...|.+++|.|.|. +|++.+.|-+-++|-.-..+    .+..-+.|...++|+
T Consensus       335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~  413 (764)
T KOG1063|consen  335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL  413 (764)
T ss_pred             cccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceee
Confidence            8899999999554444455666789999999999999999 99999999999998755221    122224577889999


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCC-------------------------------------------CC---------
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVRE-------------------------------------------MG---------  183 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------------------~~---------  183 (317)
                      ++-+. ...+++|.+...+|+|+...                                           +.         
T Consensus       414 ~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  414 SFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             ehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence            99986 67888999999999998640                                           00         


Q ss_pred             ------------------------ceeeeccCccceEEEEecCCCCcEEEEEecCC-----cEEEEEccCCCccEEEEec
Q 021121          184 ------------------------STMIIPAHEFEILACDWNKYDDCLIASASVDK-----SIKIWDVRNYRVPIAVLNG  234 (317)
Q Consensus       184 ------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~  234 (317)
                                              .+..+.+|...|.+++.+| +++++|+++...     .|++|+..+..+ ...+.+
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~  570 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQ-VQELEG  570 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhh-hheecc
Confidence                                    0112236778899999999 999999998654     599999988765 668899


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce---eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL---VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      |.-.|+.++|||+++ +|++.+.|.++.+|........   ......|..-|.+..|+|+ +.+++|+|.|.+|++|...
T Consensus       571 HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd-e~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD-EKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc-cceeEEecCCceEEEEecc
Confidence            999999999999999 7999999999999997654322   2336789999999999999 7889999999999999987


Q ss_pred             CC
Q 021121          312 MD  313 (317)
Q Consensus       312 ~~  313 (317)
                      ..
T Consensus       649 ~~  650 (764)
T KOG1063|consen  649 DL  650 (764)
T ss_pred             Cc
Confidence            65

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.96  E-value=1.1e-26  Score=172.69  Aligned_cols=262  Identities=20%  Similarity=0.322  Sum_probs=206.6

Q ss_pred             ceeeeeecCCCCeeEEEec--CCCCCeEEEEEc----CCeEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCCC----
Q 021121           51 LTELVAFDTADGVYDLAWS--ESHDSLLIAAVA----DGSVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTRR----  119 (317)
Q Consensus        51 ~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~----dg~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~----  119 (317)
                      .+++..+..+-.+.++.|+  |+....|+.|+.    .+.|.|..+... ..+.+. .-..|.-+++.+.|.|+..    
T Consensus        35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~-s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED-SGELVEDANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC-CCceeccCCCCCCCCccceEecCCccccCc
Confidence            4456667777889999999  444568888875    467888877643 222221 1236889999999999863    


Q ss_pred             CEEEEEcCCCEEEEEEcCCCcee----EE-----eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---eee
Q 021121          120 DSFITSSWDDTVKLWTVDRPTSV----RT-----FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---TMI  187 (317)
Q Consensus       120 ~~l~~~~~dg~v~iwd~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~  187 (317)
                      .+|++++  ..+++|.+...+..    ..     -..+..+++++.|+.-+.+++.+++-|-+..|||++++..   ..+
T Consensus       114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            3566554  48999998742111    11     1245678999999998899999999999999999998733   567


Q ss_pred             eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecC-CeEEEE
Q 021121          188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYD-MTVCLW  264 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-~~i~vw  264 (317)
                      +..|..+|..++|.....+.+++.+.||.+|+||+|..+......+.  ...+...++|++...+++|+-..| ..|.|.
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            77899999999999866789999999999999999987643223322  246788999999998888886655 469999


Q ss_pred             ecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          265 DFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       265 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      |++.....+.++++|.+.|++++|.|.....|+|+|.|..+.+||+...++
T Consensus       272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            999999899999999999999999999888999999999999999988765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=4.9e-28  Score=192.31  Aligned_cols=252  Identities=18%  Similarity=0.301  Sum_probs=211.3

Q ss_pred             eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc--CCcceEEEEEecCCCCEEEEEcCCC
Q 021121           52 TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE--HTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        52 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      +.+..+.|.+-|.++..+... +.+.+|+. |.|+|||+.......++..+..  ....|.++...|||+ .|++|+.-.
T Consensus       411 rq~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeas  487 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEAS  487 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccc
Confidence            345556788889999999776 68888875 6799999987766666666654  356799999999998 899999999


Q ss_pred             EEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE
Q 021121          130 TVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       130 ~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  207 (317)
                      ++.|||+.......  .+....-...+++.+|| .++.+++..||.|.|||+++...++.+++|...+.||.+++ +|..
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtk  565 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTK  565 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCce
Confidence            99999998765433  33333346788999999 88999999999999999999999999999999999999999 9999


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      |.+|+-|.++|.||++.++++. .. ...+.|.++.++|++. +|+.|-.++.+.|......+  ...+..|++.|.++.
T Consensus       566 lWTGGlDntvRcWDlregrqlq-qh-dF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~--kyqlhlheScVLSlK  640 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLK  640 (705)
T ss_pred             eecCCCccceeehhhhhhhhhh-hh-hhhhhheecccCCCcc-ceeeecccCcEEEEecCCcc--ceeecccccEEEEEE
Confidence            9999999999999999987532 22 2456899999999999 79999999998888766544  456778999999999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |.+. ++++++.|.|+.+..|....+.
T Consensus       641 Fa~c-GkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  641 FAYC-GKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             eccc-CceeeecCchhhhhhccCcccc
Confidence            9999 8999999999999999986653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.6e-26  Score=186.88  Aligned_cols=244  Identities=18%  Similarity=0.294  Sum_probs=204.5

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .+.+|.++||+.+. +.||.+-.+|.|.+|++...  +.....+.+ ....|.+++|++.+  .|++.+.+|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccC-CceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEecc
Confidence            34579999999987 68999999999999999864  344444444 35689999999665  58999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce--eeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      ++++...+....+.|++++.+|. +..++.|++||.+..++...++..  ..+...++.+.++.|+| ++..+++|+.||
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDG  176 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCc
Confidence            99999999999999999999998 788999999998888887766443  34455678899999999 999999999999


Q ss_pred             cEEEEEccCCCccEEEE-------e-cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          216 SIKIWDVRNYRVPIAVL-------N-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~-------~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      .|++||..++.. +...       . ....-|+++.|-.++  .|++|..-|+|++||...+. +.+.+..|.+.|.+++
T Consensus       177 ~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT-LiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  177 VIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT-LIQSHSCHDADVLALA  252 (691)
T ss_pred             eEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc-hhhhhhhhhcceeEEE
Confidence            999999998764 3311       1 133467888888776  59999999999999998876 7788899999999999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ..++ ++++.++|.|+.|..+...+..
T Consensus       253 v~~~-~d~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  253 VADN-EDRVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             EcCC-CCeEEEccCCCceEEEEecCCc
Confidence            9998 7899999999999999887653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=5e-27  Score=184.28  Aligned_cols=254  Identities=19%  Similarity=0.265  Sum_probs=201.3

Q ss_pred             cCCCCeeEEEecCCCC-CeEEEEEcCCeEEEEEeCC-CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           58 DTADGVYDLAWSESHD-SLLIAAVADGSVKIYDTAL-PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      -+.+.|++++|+|..+ +++++|...|.|-+||+.. .+....+..+..|..+|.++.|+|.+...+++.+.||+|+.-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            3678899999999876 7899999999999999952 2234456667889999999999999888999999999999999


Q ss_pred             cCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          136 VDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       136 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      ++......  .+......+.++.|+.. ...++.+..=|.+.+||+++.+. ...+..|+..|.+++++|....++++++
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s  342 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS  342 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence            98774333  33335566888889888 55566777777999999998765 5566678889999999999999999999


Q ss_pred             cCCcEEEEEccCCCc---cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc---cccceeeeeec-cc----c
Q 021121          213 VDKSIKIWDVRNYRV---PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM---VEDALVGRYDH-HT----E  281 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~-~~----~  281 (317)
                      .|++.+|||+|....   |......|...|.+..|||.+.. |++.+.|..|+|||..   ...++...+.. +.    -
T Consensus       343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl  421 (498)
T KOG4328|consen  343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL  421 (498)
T ss_pred             cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccc
Confidence            999999999997542   33445579999999999999996 8899999999999984   22222222221 11    1


Q ss_pred             eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          282 FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ......|.|+ ..++++|-.-..|-|+|-..++
T Consensus       422 T~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  422 TPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cchhheeCCC-ccEEEEeccCcceeEEcCCCCE
Confidence            2445689998 8899999999999999876654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.3e-26  Score=193.68  Aligned_cols=245  Identities=14%  Similarity=0.233  Sum_probs=202.9

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      +.|..+.+.++|.|+|+ .|++++.||.|++|+.....  +.-..+..+...|.+++...  . +|++|+.+++|.+|.+
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~s--~-~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACYS--N-HFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeecc--c-ceEEeeccceEEEeeC
Confidence            46888899999999995 99999999999999977652  11112222778888887653  3 8999999999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      .+++.-..+....-++.+++++.+ +++++.|+.|-.|++.++.+......+.+|+.+|.++.++| .+++||+.+-||.
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~  161 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGK  161 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCce
Confidence            998877667777888999999998 89999999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEEccCCCccEEEEec--------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee-eecccceeEeEE
Q 021121          217 IKIWDVRNYRVPIAVLNG--------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-YDHHTEFAVGVD  287 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~v~~~~  287 (317)
                      |++||+.++.. ..++.+        ....+..++|+|++.. ++..+.|+.|++|+..+.+..... ...+...+..++
T Consensus       162 v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  162 VQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             EEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence            99999997653 333221        1456788999999885 666677999999998887743322 223444599999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |+|. |.+||+++.||.|.|||+++
T Consensus       240 wsPn-G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  240 WSPN-GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EcCC-CcEEeeeccCCcEEEEeccc
Confidence            9999 89999999999999999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.96  E-value=1e-25  Score=189.18  Aligned_cols=303  Identities=17%  Similarity=0.164  Sum_probs=226.1

Q ss_pred             cCcceeEEEEecCCCC--eEEEEEeccccc----------ccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC
Q 021121            6 TPFNGYSVKFSPFYES--RLAVATAQNFGI----------LGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD   73 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~--~~~~~~~~~~~~----------~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   73 (317)
                      ....++.+.|+|+...  .+.++....+..          ..++.+.+|++....   .+...+.....|.+++|+|..+
T Consensus       179 ~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~---~Pe~~~~~~s~v~~~~f~p~~p  255 (555)
T KOG1587|consen  179 PKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPN---TPELVLESPSEVTCLKFCPFDP  255 (555)
T ss_pred             hhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCC---CceEEEecCCceeEEEeccCCc
Confidence            4456788899996442  233333332211          124579999998763   2334446788999999999999


Q ss_pred             CeEEEEEcCCeEEEEEeCCCCC--CCCc-eeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCcee------E
Q 021121           74 SLLIAAVADGSVKIYDTALPPT--ANPI-RSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSV------R  143 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~------~  143 (317)
                      ++++.|..+|.|.+||+.....  ...+ .....|..+++.+.|..+-. .-+++++.||.|..|+++.-...      .
T Consensus       256 ~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~  335 (555)
T KOG1587|consen  256 NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE  335 (555)
T ss_pred             ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc
Confidence            9999999999999999987633  1112 22346899999999965432 25899999999999988653221      0


Q ss_pred             Eee------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC--------ceeeeccCccceEEEEecCCCCcEEE
Q 021121          144 TFK------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG--------STMIIPAHEFEILACDWNKYDDCLIA  209 (317)
Q Consensus       144 ~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~l~  209 (317)
                      ...      .....++++.|.+.+.+.+++|+++|.|..-+-...+        ....+..|.++|+++.++|.....++
T Consensus       336 ~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl  415 (555)
T KOG1587|consen  336 SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL  415 (555)
T ss_pred             cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceee
Confidence            111      1234689999999999999999999999874433221        12345568899999999997777777


Q ss_pred             EEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-ceeeeeecccceeEeEEE
Q 021121          210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~  288 (317)
                      +++ |.++++|.......|+..+..+...+++++|||....+++++..||.+.+||+.... .++.....+....+.+.|
T Consensus       416 s~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~  494 (555)
T KOG1587|consen  416 SVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW  494 (555)
T ss_pred             eec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence            776 999999998855667888888888899999999999899999999999999987654 334444444667778888


Q ss_pred             EeccCCeEEEeecCCcEEEEecCCC
Q 021121          289 SVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       289 ~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ++. +..|+.|...|.+++|++...
T Consensus       495 s~~-g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  495 SPN-GKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCC-CcEEEEecCCCcEEEEEcCch
Confidence            887 889999999999999999653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=6.5e-27  Score=191.07  Aligned_cols=120  Identities=27%  Similarity=0.454  Sum_probs=106.2

Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCC------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      |+.+.|+|.+...|+++++||.|++|.+....      .+-..+..|...|+++.|+|-...+|++++.|.+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            56777888888999999999999999987543      345678889999999999998777999999999999999999


Q ss_pred             ccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121          269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA  316 (317)
Q Consensus       269 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  316 (317)
                      .. ....+.+|.+.|.+++|||+ ++.+++.+.||+|++|+-...+..
T Consensus       710 ~~-~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  710 AK-LYSRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             hh-hhheeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCc
Confidence            87 56789999999999999999 899999999999999998776543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.8e-25  Score=166.33  Aligned_cols=253  Identities=17%  Similarity=0.310  Sum_probs=190.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecC-CCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSE-SHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg   83 (317)
                      |.+-|.++.|.+  -|+-+++++.      |++|.|||.+............ .|.+.|..+.|.+ .-...+|+++.|+
T Consensus        12 h~DlihdVs~D~--~GRRmAtCSs------Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   12 HKDLIHDVSFDF--YGRRMATCSS------DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             Ccceeeeeeecc--cCceeeeccC------CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            567799999999  4555666664      9999999986665545444433 5889999999965 3336999999999


Q ss_pred             eEEEEEeCCC------CCCCCceeeccCCcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCceeE------Eee----
Q 021121           84 SVKIYDTALP------PTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSVR------TFK----  146 (317)
Q Consensus        84 ~i~v~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~------~~~----  146 (317)
                      ++.||.=...      .......++....+.|+.++|.|... ..+++++.||.++||+.-..-.+.      .++    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            9999985321      12234456677889999999998632 278999999999999876543222      222    


Q ss_pred             ---ccccceEEEEEecC--CCCeEEEEeCC-----CeEEEEeCCCCC----ceeeeccCccceEEEEecCCCC---cEEE
Q 021121          147 ---EHAYCVYNATWNPR--HSDVFCSASGD-----CTLRIWDVREMG----STMIIPAHEFEILACDWNKYDD---CLIA  209 (317)
Q Consensus       147 ---~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~v~~i~~~~~~~---~~l~  209 (317)
                         .+..+..|+.|+|.  ...+|++|+.+     +.+.||......    .+..+.+|..+|+.++|.|.-+   .+||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence               35567889999974  24578888766     478888765442    3446678999999999999544   5799


Q ss_pred             EEecCCcEEEEEccCCC-------------------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          210 SASVDKSIKIWDVRNYR-------------------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      +++.|| |+||.++...                   ..+..+..|++.|..+.|+-.|. +|++.+.||.|++|...-
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhhh
Confidence            999999 9999997421                   12344678999999999999998 799999999999997543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.3e-28  Score=201.64  Aligned_cols=222  Identities=24%  Similarity=0.450  Sum_probs=197.4

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN  154 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  154 (317)
                      .+......-.+++|+.+         .+..|...+.++..-..++ .+++|+.|-.+-+|.+.....+..+.+|..+|.+
T Consensus         6 ~~m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS   75 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR---------EFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIES   75 (825)
T ss_pred             ccceeeeeeccccccch---------hhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhheeeccCCccee
Confidence            33444445557777754         2346888888888865555 8999999999999999888888889999999999


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG  234 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  234 (317)
                      +.|++. ..++++|+.+|+|++||+...+.++.+.+|...+.++.|+| -+.+.+.|+.|..+++||.+... +...+.+
T Consensus        76 l~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s  152 (825)
T KOG0267|consen   76 LTFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKG-CSHTYKS  152 (825)
T ss_pred             eecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccC-ceeeecC
Confidence            999998 88999999999999999999999999999999999999999 88899999999999999999755 5888889


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |...|..+.|+|+|+ +++.+++|..++|||...++ +...+..|++.+..+.|+|. +-++++||.|+++++||+++
T Consensus       153 ~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  153 HTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             CcceeEEEeecCCCc-eeeccCCcceeeeecccccc-cccccccccccccccccCch-hhhhccCCCCceeeeeccce
Confidence            999999999999999 79999999999999998886 77899999999999999998 78999999999999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.4e-24  Score=176.22  Aligned_cols=261  Identities=15%  Similarity=0.134  Sum_probs=180.1

Q ss_pred             ecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            5 KTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      .....+.+++|+|+  +. +++++..      ++.|++||......    ...+.....+..++|+|+++.+++++..++
T Consensus        28 ~~~~~~~~l~~~~d--g~~l~~~~~~------~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~   95 (300)
T TIGR03866        28 PVGQRPRGITLSKD--GKLLYVCASD------SDTIQVIDLATGEV----IGTLPSGPDPELFALHPNGKILYIANEDDN   95 (300)
T ss_pred             ECCCCCCceEECCC--CCEEEEEECC------CCeEEEEECCCCcE----EEeccCCCCccEEEECCCCCEEEEEcCCCC
Confidence            33455778999994  44 4344443      78999999886542    222223334678899999854445556789


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC-EEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      .+++||+...   ..+..+. +...+.+++|+|++. ++++++.++ .+.+||.++++...... ....+..++|+|+ +
T Consensus        96 ~l~~~d~~~~---~~~~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~d-g  168 (300)
T TIGR03866        96 LVTVIDIETR---KVLAEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTAD-G  168 (300)
T ss_pred             eEEEEECCCC---eEEeEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCC-C
Confidence            9999999764   3444443 234568899999998 777777664 57788998877665544 2345678999999 6


Q ss_pred             CeE-EEEeCCCeEEEEeCCCCCceeeeccCc-------cceEEEEecCCCCcEEEE-EecCCcEEEEEccCCCccEEEEe
Q 021121          163 DVF-CSASGDCTLRIWDVREMGSTMIIPAHE-------FEILACDWNKYDDCLIAS-ASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       163 ~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      ..+ +++..++.|++||+++++.+..+..+.       .....++|+| +++.+++ .+.++.+.+||.++.+. .... 
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~-~~~~-  245 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEV-LDYL-  245 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcE-EEEE-
Confidence            655 455569999999999887666553211       1234688999 7776444 45567899999987653 3333 


Q ss_pred             cCCCceeEEEecCCCCeeEEe-eecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121          234 GHGYAVRKVKFSPHRRNLLAS-CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      .+...+.+++|+|+++. |++ .+.++.|++||+++++ ++..+... ...++++++|
T Consensus       246 ~~~~~~~~~~~~~~g~~-l~~~~~~~~~i~v~d~~~~~-~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       246 LVGQRVWQLAFTPDEKY-LLTTNGVSNDVSVIDVAALK-VIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EeCCCcceEEECCCCCE-EEEEcCCCCeEEEEECCCCc-EEEEEEcc-cccceeEeCC
Confidence            24457899999999995 555 4578999999999876 45555543 4558888764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.95  E-value=1.4e-25  Score=173.69  Aligned_cols=294  Identities=17%  Similarity=0.202  Sum_probs=221.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-----eeeee-ecCCCCeeEEEecCCCCCeEEEE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-----TELVA-FDTADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-----~~~~~-~~~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      ...+++++.|.+...++++.+++       |..|++|.++...+.-     ..+.. ..|...|+++.|+|+| .+||+|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~-------D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg   83 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGG-------DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASG   83 (434)
T ss_pred             CCCceEEEEeccCcccceecccC-------ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-Ceeeec
Confidence            56789999999965555555554       8899999997654322     11111 2688999999999999 499999


Q ss_pred             EcCCeEEEEEeC--------C-----CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee
Q 021121           80 VADGSVKIYDTA--------L-----PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK  146 (317)
Q Consensus        80 ~~dg~i~v~~~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  146 (317)
                      +.+|.|.+|...        +     .+.+.....+.+|...|..++|+|++. ++++++.|..+++||+..|+....+.
T Consensus        84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecc
Confidence            999999999876        2     112334456778999999999999998 99999999999999999999999999


Q ss_pred             ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-----------------------cCccceEEEEecCC
Q 021121          147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-----------------------AHEFEILACDWNKY  203 (317)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------~~~~~v~~i~~~~~  203 (317)
                      .|...+..++|.|. .+++++-+.|...+.+++...+.+....                       ....-...++|+| 
T Consensus       163 dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-  240 (434)
T KOG1009|consen  163 DHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-  240 (434)
T ss_pred             ccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-
Confidence            99999999999998 8889888888877777765432221111                       0112246678999 


Q ss_pred             CCcEEEEEec---------CCcEEEEEccCCCccEEEEecCCCceeEEEecCC-----------------CCeeEEeeec
Q 021121          204 DDCLIASASV---------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH-----------------RRNLLASCSY  257 (317)
Q Consensus       204 ~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~l~~~~~  257 (317)
                      ++.++++...         -+..++|+-...++|...+.....+...+.|+|-                 .+..++.+ .
T Consensus       241 dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t  319 (434)
T KOG1009|consen  241 DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-T  319 (434)
T ss_pred             CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-e
Confidence            8988887642         1245677766666677777766666666666651                 12134444 4


Q ss_pred             CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          258 DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       258 d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .+.+.+||.++.+++...-.-|-..|++++|+++ +..|+..+.||...+-.++.
T Consensus       320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d-g~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD-GSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             cceEEEeccccccceEEEeeeeeeeecceeecCC-CcEEEEeccCCceEEEEEcc
Confidence            5679999999988776667778999999999999 88999999999887765544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.3e-25  Score=183.33  Aligned_cols=290  Identities=17%  Similarity=0.284  Sum_probs=224.5

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      -+...|+|  ++.++++.+.      .|..++|.......-.......+|...|.+++|.|.|+ +|++.+.|-+-|++-
T Consensus       319 F~g~lw~~--n~~~ii~~g~------~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  319 FWGGLWSP--NSNVIIAHGR------TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFA  389 (764)
T ss_pred             eeeEEEcC--CCCEEEEecc------cCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeec
Confidence            56788999  4556666554      89999999443332222333348999999999999995 888999999999987


Q ss_pred             eC-CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC------------------------------
Q 021121           90 TA-LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR------------------------------  138 (317)
Q Consensus        90 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~------------------------------  138 (317)
                      -- .......+..-+-|.-..+|+++-+.. ..+++|.....+++|+...                              
T Consensus       390 ~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG  468 (764)
T KOG1063|consen  390 RWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG  468 (764)
T ss_pred             ccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence            54 222234444556788899999998753 3799999999999997631                              


Q ss_pred             -------------Cc---------------------------------eeEEeeccccceEEEEEecCCCCeEEEEeCCC
Q 021121          139 -------------PT---------------------------------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDC  172 (317)
Q Consensus       139 -------------~~---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  172 (317)
                                   |.                                 .++++.+|...|++++.+|+ ++++++++...
T Consensus       469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~  547 (764)
T KOG1063|consen  469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSS  547 (764)
T ss_pred             ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhC
Confidence                         00                                 01123468889999999999 99999987653


Q ss_pred             -----eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc---EEEEecCCCceeEEEe
Q 021121          173 -----TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP---IAVLNGHGYAVRKVKF  244 (317)
Q Consensus       173 -----~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~  244 (317)
                           .|++|+..+-.....+..|.-.|+.++|+| ++++|++.+.|.++.+|........   ....+.|..-|+.+.|
T Consensus       548 ~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW  626 (764)
T KOG1063|consen  548 LKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW  626 (764)
T ss_pred             CccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEccc
Confidence                 499999998888888999999999999999 9999999999999999988654322   2336789999999999


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccc--cceee-eeecccceeEeEEEEeccC----CeEEEeecCCcEEEEecCC
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVE--DALVG-RYDHHTEFAVGVDMSVLVE----GLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~----~~l~s~~~dg~i~~w~~~~  312 (317)
                      +|++. +++|+|.|.+|++|.....  +...+ ....+..+|+.+++.|-..    ..++.|-..|.|.+|+...
T Consensus       627 ~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~  700 (764)
T KOG1063|consen  627 SPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR  700 (764)
T ss_pred             Ccccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence            99998 5999999999999998776  32222 3446788999999987522    2677788999999999763

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=2.7e-25  Score=167.58  Aligned_cols=274  Identities=18%  Similarity=0.300  Sum_probs=211.2

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC-------C---cceeeeeecCCCCeeEEEec-------CCCC
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA-------P---ALTELVAFDTADGVYDLAWS-------ESHD   73 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-------~---~~~~~~~~~~~~~v~~~~~~-------~~~~   73 (317)
                      ..+.|+|  ++.-+.+...      |..+.+|++....       +   .......+.....|...+|-       |+. 
T Consensus        53 kgckWSP--DGSciL~~se------dn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-  123 (406)
T KOG2919|consen   53 KGCKWSP--DGSCILSLSE------DNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-  123 (406)
T ss_pred             ccceeCC--CCceEEeecc------cCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-
Confidence            4688999  5666666655      8899999986431       1   12233334566778888886       454 


Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeec--cCCc---ceEEEEEecCCCCEEEEEcCCCEEEEEEc-CCCceeEE---
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLH--EHTR---EVHSADYNPTRRDSFITSSWDDTVKLWTV-DRPTSVRT---  144 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-~~~~~~~~---  144 (317)
                      .++++.+.+.-|++||.-++   +....+.  .|..   ...+++|+|||. .|++|. ...|+++|+ +.|.....   
T Consensus       124 ~l~a~ssr~~PIh~wdaftG---~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTG---KLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ceeeeccccCceeeeecccc---ccccchhhhhhHHhhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhh
Confidence            68999999999999999877   3333333  2333   456899999998 666655 689999999 44422111   


Q ss_pred             ----eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCcEEE
Q 021121          145 ----FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKSIKI  219 (317)
Q Consensus       145 ----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v  219 (317)
                          -.+..+.+.+++|+|.+..+++.++....+-||.-..+.++..+-+|.+.|+.+.|.+ +++.|.+|.. |..|..
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILC  277 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence                1234678999999999888999999999999999888899999999999999999999 8888888875 668999


Q ss_pred             EEccCCCccEEEEecCCC-ceeEEEe--cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          220 WDVRNYRVPIAVLNGHGY-AVRKVKF--SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      ||+|..+.++..+..|.. .-..|.|  .|+++ +|++|+.||.|++||+......+..+..+...++.++++|. -.++
T Consensus       278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpil  355 (406)
T KOG2919|consen  278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPIL  355 (406)
T ss_pred             EeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-ccee
Confidence            999998888888777755 3344444  67888 79999999999999999855566788889999999999997 5677


Q ss_pred             EEeec
Q 021121          297 ASTGW  301 (317)
Q Consensus       297 ~s~~~  301 (317)
                      ++++.
T Consensus       356 atssG  360 (406)
T KOG2919|consen  356 ATSSG  360 (406)
T ss_pred             eeccC
Confidence            77763

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.8e-25  Score=183.73  Aligned_cols=248  Identities=20%  Similarity=0.311  Sum_probs=203.9

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC--CCCeEEEEEc
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES--HDSLLIAAVA   81 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~   81 (317)
                      ++....+++++.||  +++.++++..      -|+++||++..-..   ......|...|.|+.|+..  +.++||+++.
T Consensus       456 ~d~r~G~R~~~vSp--~gqhLAsGDr------~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSP--DGQHLASGDR------GGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             cCcccceEEEEECC--CcceecccCc------cCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccC
Confidence            45667899999999  7999999886      89999999987652   1222368999999999853  3468999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC-CCEEEEEcCCCEEEEEEcCCCceeEEee-----ccccceEEE
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR-RDSFITSSWDDTVKLWTVDRPTSVRTFK-----EHAYCVYNA  155 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~  155 (317)
                      |..|.|||+..  ...++.++.+|...|+++.|...| +..+++++.|..|.+--.+.......+.     .....++.+
T Consensus       525 dRlIHV~Dv~r--ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  525 DRLIHVYDVKR--NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM  602 (1080)
T ss_pred             CceEEEEeccc--ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence            99999999874  467788899999999999997766 3378899999877543322111111121     124568999


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      +..|. .+++++++.|..|+|||+++++..+.+++   |++....+...| .+.++++...|.++.++|..+++. +...
T Consensus       603 ~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEc-vA~m  679 (1080)
T KOG1408|consen  603 AVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGEC-VAQM  679 (1080)
T ss_pred             eeCCC-cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchh-hhhh
Confidence            99998 89999999999999999999999999874   556678899999 999999999999999999999874 8888


Q ss_pred             ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .+|...|+.+.|.+|.++ |++.+.||.|.||.+..
T Consensus       680 ~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCcchheeeeeecccchh-heeecCCceEEEEECch
Confidence            999999999999999995 88899999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.94  E-value=3.1e-24  Score=159.57  Aligned_cols=256  Identities=17%  Similarity=0.284  Sum_probs=191.5

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccc-cccCceEEEEecCCCCCc-----ceeeeee--cCCCCeeEEEecCCCCCeE
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFG-ILGNGRVHVLDLSPAAPA-----LTELVAF--DTADGVYDLAWSESHDSLL   76 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~-~~~~g~i~i~~~~~~~~~-----~~~~~~~--~~~~~v~~~~~~~~~~~~l   76 (317)
                      .+...|..++-+|. +.+++++...... ...--..-||.+.+....     +..+..+  .+-+.|.|+.|.|++. .+
T Consensus        61 h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-kl  138 (370)
T KOG1007|consen   61 HHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KL  138 (370)
T ss_pred             cCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-ee
Confidence            36688999999997 4455555443211 111135789999765432     2333333  2445899999999885 55


Q ss_pred             EEEEcCCeEEEEEeCCCCCCCCceee-----ccCCcceEEEEEec--CCCCEEEEEcCCCEEEEEEcCCCceeEEee-cc
Q 021121           77 IAAVADGSVKIYDTALPPTANPIRSL-----HEHTREVHSADYNP--TRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EH  148 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~  148 (317)
                      ++-. |..|.+|++......  ...+     ..+....++-+|+|  ++. .+++. .|+++..||+++.++...+. +|
T Consensus       139 asm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~tl~~~D~RT~~~~~sI~dAH  213 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDSTLQFWDLRTMKKNNSIEDAH  213 (370)
T ss_pred             EEec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccc-eEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence            5443 888999999876331  2111     23566788889998  343 55554 48999999999887766654 68


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR-  226 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~-  226 (317)
                      ...|..+.|+|+...+|++|+.||.|++||.|.. .++..+.+|...+.++.|+|...+++++|+.|..|.+|....-. 
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            8889999999997889999999999999999875 56788899999999999999889999999999999999654211 


Q ss_pred             ---------------------------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          227 ---------------------------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       227 ---------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                                                 -.+.++..|...|++++|+.-.+.++|+-+.||.+.|=.+.
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                       02345677999999999999999889999999999886654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4e-24  Score=168.30  Aligned_cols=245  Identities=12%  Similarity=0.144  Sum_probs=198.7

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ..++|+++.|+|.. .+|++++.|+++++|.++.. ....+..+.-...+|.+.+|.|+|...+++++....++.||+.+
T Consensus       212 s~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CcCCceEEEecCCC-ceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            45689999999987 59999999999999999854 34456666666889999999999987899999999999999998


Q ss_pred             CceeEE--eecc-ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          139 PTSVRT--FKEH-AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       139 ~~~~~~--~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      .+..+.  ..++ ...+.....+|+ +++|+..+..|.|.+....+++.+..++ .++.+..+.|+. +++.|++++.+|
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~G  366 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTG  366 (514)
T ss_pred             cccccccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCc
Confidence            765432  2233 235778888998 8899999999999999999999998887 567899999998 889999989999


Q ss_pred             cEEEEEccCCCccEEEEecCC-CceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----ceeeeeecccceeEeEEEE
Q 021121          216 SIKIWDVRNYRVPIAVLNGHG-YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----ALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~  289 (317)
                      .|.+||++.... +..+.... -.-++++.++++. +||+|+..|.|.|||..+..     .++..+..-...|++|+|+
T Consensus       367 eV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  367 EVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             eEEEEecCCcce-EEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence            999999998754 55554322 2346788889998 79999999999999965422     3556666677889999999


Q ss_pred             eccCCeEEEee--cCCcEEEEecC
Q 021121          290 VLVEGLLASTG--WDELVYVWQQG  311 (317)
Q Consensus       290 ~~~~~~l~s~~--~dg~i~~w~~~  311 (317)
                      |+ .++||.++  .+..+|+-.+.
T Consensus       445 ~d-~qiLAiaS~~~knalrLVHvP  467 (514)
T KOG2055|consen  445 HD-AQILAIASRVKKNALRLVHVP  467 (514)
T ss_pred             cc-hhhhhhhhhccccceEEEecc
Confidence            99 78887776  46778776654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.93  E-value=9.2e-24  Score=163.30  Aligned_cols=253  Identities=19%  Similarity=0.309  Sum_probs=192.2

Q ss_pred             CceEEEEecCCCCCcceee-eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC----CCCCceeeccCCcceE
Q 021121           36 NGRVHVLDLSPAAPALTEL-VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP----TANPIRSLHEHTREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~~~~~v~  110 (317)
                      .|...+.-+.+.+..-... ..-+|.++|..++|+|.++..+|+|+.|.+|.||.+....    ..+++..+.+|...|-
T Consensus        56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg  135 (472)
T KOG0303|consen   56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG  135 (472)
T ss_pred             CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence            4456665555433211111 1127999999999999988999999999999999987642    2356778899999999


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (317)
                      -++|+|...+.|++++.|..|.+||+.+++.+..+. |...|+++.|+.+ +.++++.+.|..|+|||.++++.+..-.+
T Consensus       136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~~~  213 (472)
T KOG0303|consen  136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEGVA  213 (472)
T ss_pred             EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeeccc
Confidence            999999998899999999999999999999988888 9999999999998 89999999999999999999998887766


Q ss_pred             Cccc-eEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEEEEe-cCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          191 HEFE-ILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       191 ~~~~-v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      |.+. ...+.|-. ++.++.+|-   .+..+-+||..+.+.++.... .....|.---|.|+..-+.++|-.|+.|+-|.
T Consensus       214 heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  214 HEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             ccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            7643 34455665 777555543   456899999988877654432 23345555567788775566777999999999


Q ss_pred             cccccceeeeeecc--cceeEeEEEEec
Q 021121          266 FMVEDALVGRYDHH--TEFAVGVDMSVL  291 (317)
Q Consensus       266 ~~~~~~~~~~~~~~--~~~v~~~~~~~~  291 (317)
                      +....+.+..+...  ..+-.+|.|-|.
T Consensus       293 it~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  293 ITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ecCCCceeEEecccccCCcccccccccc
Confidence            98876444443322  234455666654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=4.7e-24  Score=174.17  Aligned_cols=253  Identities=18%  Similarity=0.332  Sum_probs=184.0

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .|...|+.+.|-| .+.+|+.+.+       |.++++||++...-. ..-..++|...|.+++|.|.++..|++|+.||.
T Consensus        98 aH~nAifDl~wap-ge~~lVsasG-------DsT~r~Wdvk~s~l~-G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~  168 (720)
T KOG0321|consen   98 AHKNAIFDLKWAP-GESLLVSASG-------DSTIRPWDVKTSRLV-GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE  168 (720)
T ss_pred             cccceeEeeccCC-CceeEEEccC-------Cceeeeeeeccceee-cceeecccccccchhhhccCCCcceeeccCCCc
Confidence            3778899999999 3555555554       889999999877622 122345899999999999999999999999999


Q ss_pred             EEEEEeCCCCC---------------C--CC-------ceeeccCCcceEE---EEEecCCCCEEEEEcC-CCEEEEEEc
Q 021121           85 VKIYDTALPPT---------------A--NP-------IRSLHEHTREVHS---ADYNPTRRDSFITSSW-DDTVKLWTV  136 (317)
Q Consensus        85 i~v~~~~~~~~---------------~--~~-------~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~v~iwd~  136 (317)
                      |.|||+.....               .  .+       ......+...|.+   +-+..|.. .|++++. |+.|+|||+
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEee
Confidence            99999875410               0  01       1111234444444   44555555 7888887 999999999


Q ss_pred             CCCceeEE--------eecc---ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccc--eEEEEec
Q 021121          137 DRPTSVRT--------FKEH---AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG--STMIIPAHEFE--ILACDWN  201 (317)
Q Consensus       137 ~~~~~~~~--------~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~i~~~  201 (317)
                      +.......        +..|   ...+.++..... +.++.+.+.|+.|++|++.+..  ++..+.++...  -..-..+
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS  326 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS  326 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC
Confidence            87643322        2222   335777777777 5555555569999999998653  33333333221  1223457


Q ss_pred             CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      | ++.++++|+.|...++|.+.+.+.+...+.+|...|++++|.|....=++++++|..+++|++..+
T Consensus       327 p-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  327 P-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             C-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            7 999999999999999999999998899999999999999998865444788899999999998654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=158.72  Aligned_cols=244  Identities=18%  Similarity=0.260  Sum_probs=185.0

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC---------CCceeec-cCCcceEEEEEe-------cCCCCEEEE
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA---------NPIRSLH-EHTREVHSADYN-------PTRRDSFIT  124 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~---------~~~~~~~-~~~~~v~~~~~~-------~~~~~~l~~  124 (317)
                      -...+.|+||| ..|++-+.|..+++|++....-.         +....++ .....|...+|.       |+.. ++++
T Consensus        51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~  128 (406)
T KOG2919|consen   51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAV  128 (406)
T ss_pred             hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeee
Confidence            35678999999 68999999999999998643100         0111111 235678888885       4444 8999


Q ss_pred             EcCCCEEEEEEcCCCceeEEeec--ccc---ceEEEEEecCCCCeEEEEeCCCeEEEEeC-CCCCceee---e----ccC
Q 021121          125 SSWDDTVKLWTVDRPTSVRTFKE--HAY---CVYNATWNPRHSDVFCSASGDCTLRIWDV-REMGSTMI---I----PAH  191 (317)
Q Consensus       125 ~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~---~----~~~  191 (317)
                      .+.+.-|++||.-+|+....+.+  |..   ...+++|+|+ +..|++ +....|++||+ |.+..-..   +    .+.
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            99999999999999988777654  322   3578999999 666654 56779999999 44432111   1    123


Q ss_pred             ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEeccccc
Q 021121          192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVED  270 (317)
Q Consensus       192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~  270 (317)
                      .+-+.+++|+|.+...++.|+....+-+|.-... .++..+-+|.+.|+.++|.++|.+ |++|+ .|-.|..||++...
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhcc
Confidence            5568899999988889999999999888887664 468888899999999999999996 65665 57889999999988


Q ss_pred             ceeeeeecccc-eeEeEEE--EeccCCeEEEeecCCcEEEEecCC
Q 021121          271 ALVGRYDHHTE-FAVGVDM--SVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       271 ~~~~~~~~~~~-~v~~~~~--~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .++..+..|.. .-..|.|  .|+ +++|++|+.||.|++||+..
T Consensus       285 ~pv~~L~rhv~~TNQRI~FDld~~-~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  285 DPVYALERHVGDTNQRILFDLDPK-GEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             chhhhhhhhccCccceEEEecCCC-CceeeccCCCccEEEEecCC
Confidence            77777777765 4445555  466 67999999999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=159.76  Aligned_cols=207  Identities=17%  Similarity=0.294  Sum_probs=163.0

Q ss_pred             ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-----eEEeeccccceEEEEEecCCCCeEEEEeCCCe
Q 021121           99 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCT  173 (317)
Q Consensus        99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  173 (317)
                      +..+++|...|++++|+.+|+ .|++++.|+.|++|+++.-..     ++. .-.-+-.+.+.|.|+-..+++++-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCE
Confidence            346789999999999999999 999999999999999976321     111 1122357899999996667777777888


Q ss_pred             EEEEeCCCCC---cee---------eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          174 LRIWDVREMG---STM---------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       174 i~i~d~~~~~---~~~---------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      +++|.+...+   ...         .-+.|...+..+-... ++.+|++++.|..|.+|+++ ++ .+..+......-+.
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYD  233 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccc
Confidence            9999875432   111         1123555666777766 88999999999999999999 44 47777766667788


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEeccccc-------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVED-------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .+.||+|+ ++++++..--|++|++--++       ..+..+.+|...|..++|+++ ...+++.+.||+.++||.+-
T Consensus       234 aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  234 AAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecCCcEEEeeccc
Confidence            99999999 79999988889999864332       234578899999999999998 88999999999999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.3e-23  Score=158.29  Aligned_cols=275  Identities=17%  Similarity=0.243  Sum_probs=191.3

Q ss_pred             CeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121           21 SRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVADGSVKIYDTALPPTANPI   99 (317)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~   99 (317)
                      ..++++.+       +|.|++||..+.+ .+....  .++..++.++|... ++..+.+++.||+|++||++...+ ...
T Consensus        41 ~~vav~lS-------ngsv~lyd~~tg~-~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~  109 (376)
T KOG1188|consen   41 TAVAVSLS-------NGSVRLYDKGTGQ-LLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SAR  109 (376)
T ss_pred             eeEEEEec-------CCeEEEEeccchh-hhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhh
Confidence            34666666       8999999998854 233333  57777888998764 567899999999999999987632 233


Q ss_pred             eeeccCC-cceEEEEEecCCCCEEEEEc----CCCEEEEEEcCCCce-eEEe-eccccceEEEEEecCCCCeEEEEeCCC
Q 021121          100 RSLHEHT-REVHSADYNPTRRDSFITSS----WDDTVKLWTVDRPTS-VRTF-KEHAYCVYNATWNPRHSDVFCSASGDC  172 (317)
Q Consensus       100 ~~~~~~~-~~v~~~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg  172 (317)
                      .....+. .+..|++.+-.++ .+++|.    .+-.|.+||++..+. +..+ ..|...|++++|+|.++++|++|+.||
T Consensus       110 ~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG  188 (376)
T KOG1188|consen  110 ISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG  188 (376)
T ss_pred             eeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence            3344444 5667777665555 677664    367899999998766 5444 468999999999999999999999999


Q ss_pred             eEEEEeCCCCC---ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC------------CC
Q 021121          173 TLRIWDVREMG---STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH------------GY  237 (317)
Q Consensus       173 ~i~i~d~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------------~~  237 (317)
                      .|.+||+....   .+...-.+...|.++.|....-+.|.+-+...+..+|+++.+.. ...+...            ..
T Consensus       189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~r~~~~~d  267 (376)
T KOG1188|consen  189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDLRKEDNCD  267 (376)
T ss_pred             eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhHHhhhhhh
Confidence            99999997652   23333347778999999973435688888899999999987663 2222111            01


Q ss_pred             ceeEEEecCCCCeeEEeeec-CCeEEEEeccc---cc--ceeeeee-cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          238 AVRKVKFSPHRRNLLASCSY-DMTVCLWDFMV---ED--ALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~-d~~i~vwd~~~---~~--~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      .+-. +.+|.+..+++.++. -+...++-+..   +.  .....+. +|..-|+++.|... +.++.|||.||.+.+|..
T Consensus       268 Y~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~-~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  268 YVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK-NDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             heee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc-cceeeccCCCceEEEEec
Confidence            1111 123433334444443 55555554432   21  2223444 47788899999876 789999999999999995

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8e-23  Score=158.39  Aligned_cols=293  Identities=15%  Similarity=0.207  Sum_probs=223.0

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC----CCcceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA----APALTELVAFDTADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      ..|...|.++.||.  +++++++++.      |-++++|++...    .++...+....|...|.|++|.... ..+.+|
T Consensus        53 ~~H~GCiNAlqFS~--N~~~L~SGGD------D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG  123 (609)
T KOG4227|consen   53 REHTGCINALQFSH--NDRFLASGGD------DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSG  123 (609)
T ss_pred             hhhccccceeeecc--CCeEEeecCC------cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecC
Confidence            34778899999999  6999999987      889999998642    2223334444677899999999765 799999


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeec--cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeE--EeeccccceEE
Q 021121           80 VADGSVKIYDTALPPTANPIRSLH--EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVR--TFKEHAYCVYN  154 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~--~~~~~~~~v~~  154 (317)
                      ..+++|..-|+++.   +.+..+.  ...+.|+.+..+|..+ .|++.+.++.|.+||.+..+ ...  ...........
T Consensus       124 ~~~~~VI~HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  124 ERWGTVIKHDIETK---QSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             CCcceeEeeecccc---eeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            99999999999875   3333332  3456999999999966 99999999999999998765 221  22234556889


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCc-ee------eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGS-TM------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      +.|+|..+.+|++.+..+-+-+||.+.... +.      .++.....-.++.|+| +|+.+++--....-.+||+-+.++
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~  278 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRC  278 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccc
Confidence            999999899999999999999999986532 11      1122222346788999 888888776666677899988776


Q ss_pred             cEEEEecCC-------CceeEEEecCCCCeeEEeeecCCeEEEEeccccc----------------------ceeeeeec
Q 021121          228 PIAVLNGHG-------YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----------------------ALVGRYDH  278 (317)
Q Consensus       228 ~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----------------------~~~~~~~~  278 (317)
                      ++..+. |+       ..+.+++|..+..  +++|+.+-.|++|.+....                      ..+..+.+
T Consensus       279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  279 FVLKSD-HNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             eeEecc-CCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence            665554 22       3577888986654  9999999999999875311                      12356789


Q ss_pred             ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          279 HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       279 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |.+.++.+.|+|. ..+|++.|-...+++|.-...|
T Consensus       356 HRSv~NQVRF~~H-~~~l~SSGVE~~~KlWS~~r~P  390 (609)
T KOG4227|consen  356 HRSVPNQVRFSQH-NNLLVSSGVENSFKLWSDHRLP  390 (609)
T ss_pred             ccccccceeecCC-cceEeccchhhheeccccccCC
Confidence            9999999999998 7899999999999999765443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=5.1e-21  Score=162.64  Aligned_cols=294  Identities=28%  Similarity=0.437  Sum_probs=223.2

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEe-cCCCCCeEEEEEc-
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW-SESHDSLLIAAVA-   81 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~-   81 (317)
                      ..+...+.++.|.+  .+..+...+.      ++.+.+|+..........+.. .+...+..+.+ ++++...++..+. 
T Consensus        62 ~~~~~~i~~~~~~~--~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (466)
T COG2319          62 RGHEDSITSIAFSP--DGELLLSGSS------DGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSL  132 (466)
T ss_pred             eeccceEEEEEECC--CCcEEEEecC------CCcEEEEEcCCCceeEEEEec-cCCCceeeEEEECCCcceEEeccCCC
Confidence            34678899999999  5665555553      899999999876411222221 11136777777 7777434555444 


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-CCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      ++.+.+|+...  .......+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+..|...+.+++|+|+
T Consensus       133 d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         133 DGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             CccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence            89999999875  1256677888999999999999998 7888875 999999999998888888889999999999988


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121          161 HSD-VFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA  238 (317)
Q Consensus       161 ~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  238 (317)
                       +. ++++++.|+.+++||.+.+.... .+..|.... ...|+| ++..+++++.|+.+++|+.+...........|...
T Consensus       210 -~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
T COG2319         210 -GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS  286 (466)
T ss_pred             -cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence             54 56556999999999988777766 577777664 338998 77888899999999999999766434444678899


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee-ecccceeEeEEEEeccCCeEEEe-ecCCcEEEEecCCCC
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY-DHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQQGMDP  314 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~~  314 (317)
                      +.++.|+|++. .+++++.|+.+++||..+........ ..|...+..+.| +..+..++.+ ..|+.+.+|++....
T Consensus       287 v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         287 VLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence            99999999777 46668888889999888776332222 377778999999 5322455555 688999999987654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=2.6e-23  Score=157.18  Aligned_cols=252  Identities=17%  Similarity=0.307  Sum_probs=194.2

Q ss_pred             cCCCCeeEEEecC----CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec--cCCcceEEEEEecC---CCCEEEEEcCC
Q 021121           58 DTADGVYDLAWSE----SHDSLLIAAVADGSVKIYDTALPPTANPIRSLH--EHTREVHSADYNPT---RRDSFITSSWD  128 (317)
Q Consensus        58 ~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~l~~~~~d  128 (317)
                      +|..+|..++|++    +.+..+++.+. ..+.+|+.........+..+.  .|.+....++|+-+   +..++++++.-
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            6788999999985    33346666654 579999987653223333322  46778888888643   34489999999


Q ss_pred             CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecCCCC
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKYDD  205 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~  205 (317)
                      |.|+|.|+.+++....+.+|...|+.+.+.|+.++++++++.|..|++|++++..++..+   .+|...|.++.|++ ++
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~g  193 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DG  193 (385)
T ss_pred             eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CC
Confidence            999999999999999999999999999999998999999999999999999999988876   47899999999999 99


Q ss_pred             cEEEEEecCCcEEEEEccCCCc--------------------------cE-EEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121          206 CLIASASVDKSIKIWDVRNYRV--------------------------PI-AVLNGHGYAVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~~~~--------------------------~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      .+|++++.|.+|++|++...+.                          +. .+-..|...|.|+.|-  |. ++++-+-+
T Consensus       194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSksce  270 (385)
T KOG1034|consen  194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCE  270 (385)
T ss_pred             CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccC
Confidence            9999999999999999973210                          00 1223466777788885  44 78888889


Q ss_pred             CeEEEEeccccc-------------ceeeeeecccceeEeEEEE--eccCCeEEEeecCCcEEEEecCCCCC
Q 021121          259 MTVCLWDFMVED-------------ALVGRYDHHTEFAVGVDMS--VLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       259 ~~i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      +.|..|....-+             .++.++.-....|.-+.|.  |. .++||.|...|.|.+||++..+.
T Consensus       271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCC
Confidence            999999872211             2233444444556666554  54 56999999999999999987543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.92  E-value=1.7e-22  Score=169.86  Aligned_cols=256  Identities=22%  Similarity=0.313  Sum_probs=195.8

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-ce--eeeeecCCCCeeEEEecCCCC-CeEEEE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LT--ELVAFDTADGVYDLAWSESHD-SLLIAA   79 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~-~~l~~~   79 (317)
                      |+.+..|+++.|+|..+..++.+..       +|.|.+||+...... ..  ......|..+++.+.|..+-. .-++++
T Consensus       239 ~~~~s~v~~~~f~p~~p~ll~gG~y-------~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~  311 (555)
T KOG1587|consen  239 LESPSEVTCLKFCPFDPNLLAGGCY-------NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL  311 (555)
T ss_pred             EecCCceeEEEeccCCcceEEeecc-------CceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence            5678899999999985555555554       999999999876642 12  222336889999999976421 358888


Q ss_pred             EcCCeEEEEEeCCCCCCCCceee---c------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--------ee
Q 021121           80 VADGSVKIYDTALPPTANPIRSL---H------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--------SV  142 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~---~------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~  142 (317)
                      +.||.|..|+++.-........+   .      .....+++++|.+...+.++.|+.+|.|.--+-...+        ..
T Consensus       312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence            99999999987754221111111   1      1234688999999888899999999999874333221        12


Q ss_pred             EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC-CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121          143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d  221 (317)
                      ..+..|.++|+++.++|-....+.+++ |.++++|... ...++..+..+...+++++|||.....++++..||.|.+||
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            345568899999999999677777776 9999999988 66777788778888999999998888999999999999999


Q ss_pred             ccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          222 VRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       222 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      +.... .|+.....+....+.+.|++.|+ +|++|...|.+.+|++..
T Consensus       471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            97643 45666655667788899999898 799999999999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.2e-22  Score=173.26  Aligned_cols=291  Identities=18%  Similarity=0.247  Sum_probs=207.7

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEecC-CCCCeEEEEEcC
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWSE-SHDSLLIAAVAD   82 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~l~~~~~d   82 (317)
                      .+...+.|+|. ...++++..       .-.|++||.+....    +..+    .....|+.+.+-. ++..++++|+.|
T Consensus      1065 ~~pk~~~~hpf-~p~i~~ad~-------r~~i~vwd~e~~~~----l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADD-------RERIRVWDWEKGRL----LNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             CCCceeeecCC-CceeEEcCC-------cceEEEEecccCce----eccccCCCCCCCccceeeeecccchhheeeeccC
Confidence            35677889996 555566554       45999999987652    3322    2345788998764 345689999999


Q ss_pred             CeEEEEEeCCC--CCCCCceeec-------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-cccce
Q 021121           83 GSVKIYDTALP--PTANPIRSLH-------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-HAYCV  152 (317)
Q Consensus        83 g~i~v~~~~~~--~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v  152 (317)
                      |.|+||+--..  +..+.+....       +..+.-.-+.|..... +|++++.-..|+|||....+....+.. ....+
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~v 1211 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLV 1211 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccc
Confidence            99999974432  1222222211       1122224467887766 666666688999999998877776653 44568


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCC---ceeeeccCccc--eEEEEecCCCCcEEEEEecCCcEEEEEccCC-C
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMG---STMIIPAHEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNY-R  226 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~-~  226 (317)
                      +++.-+-.+++++++|..||.|++||.|...   .+...+.|...  |..+.+.+..-..|++|+.+|.|++||+|.. .
T Consensus      1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             eeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            8888777778999999999999999998653   35566677776  9999998833346999999999999999983 3


Q ss_pred             ccEEEEecC---CCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-----eeeecccceeEeEEEEeccCCeEEE
Q 021121          227 VPIAVLNGH---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-----GRYDHHTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       227 ~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s  298 (317)
                      ........|   ++..+++..++..+ ++|+|+. +.|+||++.....-.     ..+....+.+.+++|+|. .-++++
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~-~~llAa 1368 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH-RLLLAA 1368 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch-hHhhhh
Confidence            222233333   23589999999998 7999987 999999987644111     111122356799999997 678899


Q ss_pred             eecCCcEEEEecCCCC
Q 021121          299 TGWDELVYVWQQGMDP  314 (317)
Q Consensus       299 ~~~dg~i~~w~~~~~~  314 (317)
                      |..|..|.||......
T Consensus      1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCceEEEeecCCcC
Confidence            9999999999876543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=7.6e-23  Score=166.14  Aligned_cols=244  Identities=18%  Similarity=0.226  Sum_probs=196.2

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      ..+|.+.|.++...|.| ..|++|+.||+|+||.+.++   .++.... ..+.|.|++|+|.+...++++.....+.+.+
T Consensus       396 yrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             EeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            34799999999999988 59999999999999999987   7777665 3669999999998876565555555565555


Q ss_pred             cCCCc-------------------------------------eeEEeeccccceEEEEEecCCCCeEEEEeCC---CeEE
Q 021121          136 VDRPT-------------------------------------SVRTFKEHAYCVYNATWNPRHSDVFCSASGD---CTLR  175 (317)
Q Consensus       136 ~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~  175 (317)
                      ..-|.                                     -++..-.|...|..+.|+.. |.+|++...+   ..|.
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSVL  549 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceEE
Confidence            42210                                     01122246778999999998 8888886553   4689


Q ss_pred             EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEee
Q 021121          176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      |+++...+....+....+.+.++.|+| ...+|++++ ...|++||+.... .+..+......|..++.+|.|.+ |+.|
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GDn-li~g  625 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGDN-LILG  625 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHH-HHHHHhcCCeeeeeeeecCCCCe-EEEe
Confidence            999987776667766778899999999 666777766 4679999998844 46666666779999999999997 7889


Q ss_pred             ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.|+.+..+|+.-...+.+.+..|...+++++|++. -.++++|+.||.+.|+.-
T Consensus       626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEee
Confidence            999999999999888888999999999999999987 669999999999999853

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=167.63  Aligned_cols=274  Identities=15%  Similarity=0.206  Sum_probs=207.2

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      ..|+.++|-|++...+++++         .++.+||.+.+. .++++.  +|++.|+|++|+.+| ..+++|+.|..|.+
T Consensus        13 hci~d~afkPDGsqL~lAAg---------~rlliyD~ndG~-llqtLK--gHKDtVycVAys~dG-krFASG~aDK~VI~   79 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAG---------SRLLVYDTSDGT-LLQPLK--GHKDTVYCVAYAKDG-KRFASGSADKSVII   79 (1081)
T ss_pred             cchheeEECCCCceEEEecC---------CEEEEEeCCCcc-cccccc--cccceEEEEEEccCC-ceeccCCCceeEEE
Confidence            47899999998544444443         389999999876 344444  799999999999999 59999999999999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                      |.-+..    -+.. -.|...|.|+.|+|-.. .+++++-. ..-+|..+.... .+.+ ....+.+.+|..+ +++++.
T Consensus        80 W~~klE----G~Lk-YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnD-Gqylal  149 (1081)
T KOG1538|consen   80 WTSKLE----GILK-YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTND-GQYLAL  149 (1081)
T ss_pred             eccccc----ceee-eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCC-CcEEEE
Confidence            995432    1111 35999999999999876 78888753 567787664332 2222 3567899999998 999999


Q ss_pred             EeCCCeEEEEeCCCCCceeeec---cCccceEEEEecCCCC----cEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121          168 ASGDCTLRIWDVREMGSTMIIP---AHEFEILACDWNKYDD----CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR  240 (317)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~  240 (317)
                      |-.+|+|.+-+- ++++...+.   +.+++|.+++|+|..+    ..+++.....++.+|.+....  +..-+.-+-...
T Consensus       150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--Igk~r~L~FdP~  226 (1081)
T KOG1538|consen  150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--IGKDRALNFDPC  226 (1081)
T ss_pred             eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee--ecccccCCCCch
Confidence            999999998864 344444443   4678899999999533    467777888888888776422  332223333456


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      |+.+.|+|. ++..|+.|+.+++|-- .+- .+.+.......|..++..|+ ++.++.|..||+|..|++-
T Consensus       227 CisYf~NGE-y~LiGGsdk~L~~fTR-~Gv-rLGTvg~~D~WIWtV~~~PN-sQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  227 CISYFTNGE-YILLGGSDKQLSLFTR-DGV-RLGTVGEQDSWIWTVQAKPN-SQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             hheeccCCc-EEEEccCCCceEEEee-cCe-EEeeccccceeEEEEEEccC-CceEEEEEccCeeehhhhH
Confidence            899999999 6778888999999863 332 45666667789999999998 8999999999999998874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.91  E-value=1.1e-20  Score=154.94  Aligned_cols=267  Identities=12%  Similarity=0.168  Sum_probs=173.7

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE-EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA-VADGSVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      ++.|.+|++.... .+..+......+....++++|+++ +|+++ ..++.|.+|+++............ .......+++
T Consensus        11 ~~~I~~~~~~~~g-~l~~~~~~~~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~   87 (330)
T PRK11028         11 SQQIHVWNLNHEG-ALTLLQVVDVPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST   87 (330)
T ss_pred             CCCEEEEEECCCC-ceeeeeEEecCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence            8899999996432 344555555667788899999985 55544 557889999997321112222221 2335678999


Q ss_pred             ecCCCCEEEEE-cCCCEEEEEEcCCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee---
Q 021121          115 NPTRRDSFITS-SWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---  186 (317)
Q Consensus       115 ~~~~~~~l~~~-~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---  186 (317)
                      +|+++ +++++ ..++.|.+|++++..    .+..+. +...+..++++|++..++++...++.|.+||+++...+.   
T Consensus        88 ~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         88 DHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             CCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            99998 55554 458999999997432    222222 223467889999944444566677999999998643221   


Q ss_pred             ----eeccCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCC--C-ccEEEEecC------CCceeEEEecCCCCeeE
Q 021121          187 ----IIPAHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNY--R-VPIAVLNGH------GYAVRKVKFSPHRRNLL  252 (317)
Q Consensus       187 ----~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~--~-~~~~~~~~~------~~~v~~~~~~~~~~~~l  252 (317)
                          ... .......++|+| ++++++++.+ ++.|.+||+...  + ..+..+..+      ......+.++|+++. +
T Consensus       166 ~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~-l  242 (330)
T PRK11028        166 PAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH-L  242 (330)
T ss_pred             CCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE-E
Confidence                111 233467899999 8888877765 899999999742  2 112222211      112346899999995 5


Q ss_pred             Eee-ecCCeEEEEecccccce---eeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCC
Q 021121          253 ASC-SYDMTVCLWDFMVEDAL---VGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGM  312 (317)
Q Consensus       253 ~~~-~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~  312 (317)
                      +++ ..++.|.+|++......   ...... ......+.++|+ +++|+++. .++.|.+|+++.
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d-g~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS-GKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC-CCEEEEEEccCCcEEEEEEcC
Confidence            555 45789999998654321   222221 124568899999 66666555 589999999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.1e-21  Score=139.30  Aligned_cols=277  Identities=14%  Similarity=0.182  Sum_probs=196.0

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC-------CCcceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA-------APALTELVAFDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      ..|++-+|+|  .++++++++.      +|.|-++.++.-       ..+...+....|.++|+.++|..   .+|++|+
T Consensus        11 ~tvf~qa~sp--~~~~l~agn~------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g   79 (325)
T KOG0649|consen   11 NTVFAQAISP--SKQYLFAGNL------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG   79 (325)
T ss_pred             HHHHHHhhCC--cceEEEEecC------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc
Confidence            3567778999  7888888886      899999998632       11233344457999999999993   3666665


Q ss_pred             cCCeEEEEEeCCCCCC---CCceee--c-----cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc
Q 021121           81 ADGSVKIYDTALPPTA---NPIRSL--H-----EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY  150 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~---~~~~~~--~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  150 (317)
                       ||.|+=|......+.   +++...  .     ..-..|+++...|..+ -++.++.|+.++-||+++|+..+.+++|++
T Consensus        80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence             599999987654221   111111  1     1234688999998877 455555799999999999999999999999


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc----------cceEEEEecCCCCcEEEEEecCCcEEEE
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE----------FEILACDWNKYDDCLIASASVDKSIKIW  220 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~l~~~~~d~~i~v~  220 (317)
                      .+.++.--.. ...+++|++||++++||.++++.+..+...+          ..|.+++.   +...+++|+ ...+.+|
T Consensus       158 YvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw  232 (325)
T KOG0649|consen  158 YVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW  232 (325)
T ss_pred             eeeeeeeccc-CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence            9999998554 4456699999999999999998887765322          23556664   445677665 5679999


Q ss_pred             EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee
Q 021121          221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      .++..+. ...+. -..++..+.|..+   .+++++..+.+.-|.+..-  +...........++..|+...-++|-.+|
T Consensus       233 hLrsse~-t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv--l~a~ip~~s~~c~s~s~~~~p~k~~s~ag  305 (325)
T KOG0649|consen  233 HLRSSES-TCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNGV--LQANIPVESTACYSASWQTSPIKFISIAG  305 (325)
T ss_pred             eccCCCc-eEEEe-cccceeEeeeecc---eEEEeccccceeeeeeccE--EEEeccCCccceeeecccCCceEEEEecc
Confidence            9998763 55544 4557888888754   4777777788998987532  32333333344666677655345677778


Q ss_pred             cCCcEEEEe
Q 021121          301 WDELVYVWQ  309 (317)
Q Consensus       301 ~dg~i~~w~  309 (317)
                      ..+.+.++.
T Consensus       306 ~s~~~~i~~  314 (325)
T KOG0649|consen  306 FSNKLHILK  314 (325)
T ss_pred             cceeeeeee
Confidence            888887763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=151.02  Aligned_cols=197  Identities=10%  Similarity=0.172  Sum_probs=163.7

Q ss_pred             eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121          109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII  188 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (317)
                      ..|+.|++.|. +|++|+.||.|.|||+.+...-+.+.+|..+|.+++|+++ ++.|++++.|..|.+||+..+.++..+
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEE
Confidence            78999999998 9999999999999999999988899999999999999999 899999999999999999999988888


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---CCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      . ..++|..+.|+|.+.+..++.-.+..-.+-++..+...+.....   -+..-.+..|.+.|+ ++++|..-|.+.++|
T Consensus       104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYD  181 (405)
T ss_pred             E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEe
Confidence            7 78899999999977777777766766677776653321111111   111223446888898 799999999999999


Q ss_pred             cccccceeeeeeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          266 FMVEDALVGRYDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       266 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ..+.+ ++..++-.. ..|..+.++.. +..|+.-+.|+.||.|++.
T Consensus       182 a~t~e-~vas~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  182 AETLE-CVASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cchhe-eeeeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehh
Confidence            99986 556666555 78999999988 8899999999999999986

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=9e-23  Score=149.95  Aligned_cols=242  Identities=14%  Similarity=0.212  Sum_probs=185.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      +|.+.|+++.|..++  +|.+|...|.|.+|++.+.   .....+. .+...|+.+.--|++  .+.+-+.|+.+.+|++
T Consensus        12 p~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTI   84 (323)
T ss_pred             cccchheehhhccch--hhhcccccceEEEEEeecC---ccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEc
Confidence            788899999999875  6999999999999999876   5555566 567889999988875  4889999999999998


Q ss_pred             CCCceeE--------------Ee---------------------------------------eccccceEEEEEecCCC-
Q 021121          137 DRPTSVR--------------TF---------------------------------------KEHAYCVYNATWNPRHS-  162 (317)
Q Consensus       137 ~~~~~~~--------------~~---------------------------------------~~~~~~v~~~~~~~~~~-  162 (317)
                      ..+..+.              .+                                       ....+.+.+..+....+ 
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            6521110              00                                       01123455555433322 


Q ss_pred             -CeEEEEeCCCeEEEEeCCCCCce----------eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC--ccE
Q 021121          163 -DVFCSASGDCTLRIWDVREMGST----------MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPI  229 (317)
Q Consensus       163 -~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~  229 (317)
                       -++++|.++|.+.+||+.++..+          .....|..++.++.+.+ .-..=++|+.+..+..|++....  .++
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccc
Confidence             25678889999999999987333          33346888999999988 55555677778889999887542  111


Q ss_pred             -EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121          230 -AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       230 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                       ..+.-.+..|..+..-||++ ++|+++.|+.|+||..++.. ++..+..|.+.|++++|+|+ ..++|+++.|++|.+|
T Consensus       244 ~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd-~~lmAaaskD~rISLW  320 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPD-CELMAAASKDARISLW  320 (323)
T ss_pred             cceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCC-CchhhhccCCceEEee
Confidence             12222344688999999999 89999999999999999987 56889999999999999998 7899999999999999


Q ss_pred             ec
Q 021121          309 QQ  310 (317)
Q Consensus       309 ~~  310 (317)
                      ++
T Consensus       321 kL  322 (323)
T KOG0322|consen  321 KL  322 (323)
T ss_pred             ec
Confidence            86

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=8.2e-22  Score=152.62  Aligned_cols=212  Identities=19%  Similarity=0.273  Sum_probs=171.6

Q ss_pred             CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-------ceeEEeeccccceEEEEEecCCCCeEEEEe
Q 021121           97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-------TSVRTFKEHAYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus        97 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (317)
                      .....+.+|.++|..++|+|.+.+.+++|+.|.+|.||.+..+       +.+..+.+|...|.-++|+|...+.|++++
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            3444567999999999999998889999999999999998664       456778899999999999999899999999


Q ss_pred             CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC-ceeEEEecCCC
Q 021121          170 GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-AVRKVKFSPHR  248 (317)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~  248 (317)
                      .|.+|.+||+.+++.+..+. |...|.++.|+. +|.++++.+.|..|+|||.++++. +..-.+|.+ .-..+.|-.++
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASG  228 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccC
Confidence            99999999999999988887 999999999998 999999999999999999999774 555566654 34567788788


Q ss_pred             CeeEEeee---cCCeEEEEeccccccee--eeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCCCC
Q 021121          249 RNLLASCS---YDMTVCLWDFMVEDALV--GRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMDP  314 (317)
Q Consensus       249 ~~~l~~~~---~d~~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~  314 (317)
                      . ++.+|-   .+..+.+||..+.++.+  ..++. +..|.---+.++ .++++.+| .|+.||.|.+..++
T Consensus       229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~d-t~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPD-TSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             c-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCC-CCEEEEEecCCcceEEEEecCCC
Confidence            7 555543   56789999988766443  23333 334554456777 55555544 79999999998765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4e-21  Score=150.04  Aligned_cols=197  Identities=18%  Similarity=0.224  Sum_probs=158.8

Q ss_pred             EEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121          110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP  189 (317)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (317)
                      .+++|+.+|. .+++++.||++++|+..+...+.....|...|.++.|+|+ ++.|++-+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            6799999988 9999999999999998888888788889999999999999 8999999999 89999999996665544


Q ss_pred             c--CccceEEEEecCCCC-----cEEEEEecCCcEEEEEccCCCc----cEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121          190 A--HEFEILACDWNKYDD-----CLIASASVDKSIKIWDVRNYRV----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       190 ~--~~~~v~~i~~~~~~~-----~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      .  .+.....+.|+. ++     .+++.....+.|+.||+.....    +..........|++++.+++|+ +++.|+.|
T Consensus       225 ~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~d  302 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMD  302 (398)
T ss_pred             Ccccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccC
Confidence            2  222356677776 54     2333333445677777654432    2222223345799999999999 89999999


Q ss_pred             CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          259 MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       259 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |.|.|++..+-+......+.|...|+.+.|+|+ .+++++.+.|....+..+..
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCC-cCcccccccCCceeEEEEee
Confidence            999999999988777778899999999999999 88999999999999988865

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1e-22  Score=164.21  Aligned_cols=251  Identities=17%  Similarity=0.217  Sum_probs=189.8

Q ss_pred             eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-----CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121           55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP-----PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      ....|...|+.++|+|.. ..|++++.||.+.+|++...     ...+++.++.+|.++|.|++..+.+. .+++|+-||
T Consensus       289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCc
Confidence            334678899999999986 59999999999999999331     23467788999999999999999988 999999999


Q ss_pred             EEEEEEcCCC----------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--CccceEE
Q 021121          130 TVKLWTVDRP----------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILA  197 (317)
Q Consensus       130 ~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~  197 (317)
                      +|+.|++...          .....+.+|.+.++.+++++. ...|++++.||+++.|+.....+ ..+..  ......+
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS  444 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence            9999966421          234467789999999999998 77889999999999999876655 33321  2233456


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-------CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          198 CDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       198 i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      +.+-.......++...-+.-.++++..... +..+..       ....+..+.++|.+. +.+++..|+.|+++|..+++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccc
Confidence            666542223333333233333333333221 222211       123577889999997 89999999999999999887


Q ss_pred             ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       271 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       ++.....|...++++++.|+ +-+|++++.||.+++|++..+
T Consensus       523 -~l~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  523 -ILHSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             -cchheeeccceecceeecCC-CceEEeecCCceeehhhccch
Confidence             67788899999999999998 789999999999999998653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1.9e-21  Score=159.49  Aligned_cols=254  Identities=16%  Similarity=0.269  Sum_probs=189.2

Q ss_pred             CceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceE
Q 021121           36 NGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~  110 (317)
                      .|.|-||+++..+... ..+..+.....|+++.|.|.++..|++++.||.|++|.+..+..    ..+...+..|...|+
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            6899999998765322 23333445678999999998888999999999999999987532    245566788999999


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-eec
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIP  189 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~  189 (317)
                      ++.|+|-..+.|++++.|-+|++||+.+++....+.+|.+.|..++|+|+ ++.+++.+.||+|++|+.++++... .-+
T Consensus       682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~  760 (1012)
T KOG1445|consen  682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYEGK  760 (1012)
T ss_pred             EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCccccCC
Confidence            99999988789999999999999999999999999999999999999999 9999999999999999998775432 211


Q ss_pred             cC-ccceEEEEecCCCCcEEEEEecCC----cEEEEEccCCC-ccEEEEecC-CCceeEEEecCCCCeeEEeeecCCeEE
Q 021121          190 AH-EFEILACDWNKYDDCLIASASVDK----SIKIWDVRNYR-VPIAVLNGH-GYAVRKVKFSPHRRNLLASCSYDMTVC  262 (317)
Q Consensus       190 ~~-~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d~~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~  262 (317)
                      +. ...--.|.|.- +++++++.+.|.    .|.+||.++.. .++....-. .-.+.--.+.+|...++++|-.|..|.
T Consensus       761 gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~  839 (1012)
T KOG1445|consen  761 GPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVN  839 (1012)
T ss_pred             CCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEE
Confidence            11 11223466665 888888877664    58889887654 223322111 111112235567776889999999999


Q ss_pred             EEecccccceeeeeeccccee--EeEEEEec
Q 021121          263 LWDFMVEDALVGRYDHHTEFA--VGVDMSVL  291 (317)
Q Consensus       263 vwd~~~~~~~~~~~~~~~~~v--~~~~~~~~  291 (317)
                      +|++-..++.+..+..|..++  .+++|.+.
T Consensus       840 ~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K  870 (1012)
T KOG1445|consen  840 MYEVIYESPYLLPLAPFMSPVGHQGLAFLQK  870 (1012)
T ss_pred             EEEecCCCceeeecccccCCCcccceeeecc
Confidence            999987775555555544332  45666664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=3.6e-19  Score=151.33  Aligned_cols=285  Identities=26%  Similarity=0.439  Sum_probs=211.8

Q ss_pred             ceeEEEE-ecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-CCeE
Q 021121            9 NGYSVKF-SPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-DGSV   85 (317)
Q Consensus         9 ~v~~~~~-~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i   85 (317)
                      .+..+.+ +++  .. +++....     .++.+.+|+.....  ........|...|..++|+|++. .++.++. ++.+
T Consensus       111 ~~~~~~~~~~~--~~~~~~~~~~-----~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~  180 (466)
T COG2319         111 SVSKLALSSPD--GNSILLASSS-----LDGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTI  180 (466)
T ss_pred             ceeeEEEECCC--cceEEeccCC-----CCccEEEEEecCCC--eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCce
Confidence            4566666 563  33 4444332     28899999998721  22333447888999999999985 7777775 9999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-EeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-TFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++|+....   ..+..+..|...|.+++|+|++...+++++.|+.|++||...+.... .+..|.... ...|+|+ +..
T Consensus       181 ~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~  255 (466)
T COG2319         181 KLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD-GSL  255 (466)
T ss_pred             EEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC-CCE
Confidence            99999864   67777778999999999999887345555999999999988777777 577777765 4489998 588


Q ss_pred             EEEEeCCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE-ecCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL-NGHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~v~~~  242 (317)
                      +++++.|+.+++|+.+.... ...+..|...+.++.|.| ++..+++++.|+.+.+||.+......... ..|...+..+
T Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
T COG2319         256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL  334 (466)
T ss_pred             EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE
Confidence            88999999999999987765 444456788999999999 77788888889889999988766422222 3677789999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE-eecCCcEEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS-TGWDELVYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~~w~~~~~  313 (317)
                      .|.+++..+...+..|+.+.+|+..... ........ ..+..+.+.+ . ..+.. +..++.+.+|+....
T Consensus       335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  402 (466)
T COG2319         335 SFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG  402 (466)
T ss_pred             EECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccC
Confidence            9943324344444678999999988876 22222222 2288889988 6 55555 889999999998764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=137.53  Aligned_cols=234  Identities=14%  Similarity=0.170  Sum_probs=174.1

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALP-------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      .|.+-+|+|.+ ++|++|..+|.|.+..++.-       +...++...++|.++|+.++|..  . +|++|+ ||.|+-|
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence            46677899987 69999999999999998653       12234455689999999999993  2 677777 5999999


Q ss_pred             EcCCCce------eEEe--ecc-----ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec
Q 021121          135 TVDRPTS------VRTF--KEH-----AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN  201 (317)
Q Consensus       135 d~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~  201 (317)
                      ..++...      +...  ..+     -..|+++...|..+. ++.++.|+.++-||+++++..+.+++|...+.++.--
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence            8765322      1111  111     235899999999444 4456689999999999999999999999999999885


Q ss_pred             CCCCcEEEEEecCCcEEEEEccCCCccEEEEec---------C-CCceeEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121          202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---------H-GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                      . ....+++|++||++|+||.++.+. +..+..         | ...|.+++-+.  . +|++|+ ...+.+|.+++.+.
T Consensus       166 ~-~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  166 N-ANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             c-cCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC--c-eEEecC-CCceeEEeccCCCc
Confidence            5 566789999999999999999774 444332         2 23566666544  3 677765 56799999998873


Q ss_pred             eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                       ...+ .-..++..+.|.   ++.++++|..+.+.-|.++.
T Consensus       240 -t~vf-pipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  240 -TCVF-PIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             -eEEE-ecccceeEeeee---cceEEEeccccceeeeeecc
Confidence             3333 335667888887   45788888888888888764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.89  E-value=7.9e-21  Score=143.47  Aligned_cols=243  Identities=19%  Similarity=0.262  Sum_probs=191.4

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ..++|+|.+|++|. ..+|++.....|.||.....+..+...++..|...|++++|+|..+ .|++++.|..-++|....
T Consensus         9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccCC
Confidence            45689999999997 6999999999999999987756888999999999999999999987 899999999999999843


Q ss_pred             C---ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----eeeccCccceEEEEecCCCCcEEEEE
Q 021121          139 P---TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----MIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       139 ~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      +   ++...+..++...+++.|+|. .+.|++|+....|.+|-++....-    ..-+.+.+.|.+++|+| ++-++++|
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccc
Confidence            3   344556668889999999999 899999999999999988764322    23345678899999999 99999999


Q ss_pred             ecCCcEEEEEccCC-------------C----ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121          212 SVDKSIKIWDVRNY-------------R----VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG  274 (317)
Q Consensus       212 ~~d~~i~v~d~~~~-------------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  274 (317)
                      +.|+..+||..--.             +    +.+.......+.+..+.|+|+|. .|+-.+.|..+.+-|.....+.+.
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhcc
Confidence            99999999975210             0    11222334567899999999999 588889999999999877654444


Q ss_pred             eeecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121          275 RYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       275 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                      ......-+..++.|-.  +..++.++.|..=.++
T Consensus       244 ~~~~~~lP~ls~~~is--e~~vv~ag~~c~P~lf  275 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWIS--ENSVVAAGYDCGPVLF  275 (361)
T ss_pred             chhhccCCceeeEeec--CCceeecCCCCCceEE
Confidence            4444446777888865  3456666666433333

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.8e-20  Score=154.61  Aligned_cols=287  Identities=13%  Similarity=0.164  Sum_probs=203.3

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      ..++.+++  .+.+....-       +-.+.+|+........ ..-....|.-.+++.+++|.+ +++|+|..||.|.+|
T Consensus       163 ~~~I~~~~--~ge~~~i~~-------~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw  232 (792)
T KOG1963|consen  163 PKSIVDNN--SGEFKGIVH-------MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVW  232 (792)
T ss_pred             CccEEEcC--CceEEEEEE-------eeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEE
Confidence            34677777  555555444       4588899887643111 111122466668999999998 699999999999999


Q ss_pred             EeCC-CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121           89 DTAL-PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus        89 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                      .--. .........++-|..+|.++.|+++|. +|++|+..|.+.+|.+++++ .+-+..-.++|..+.++|+ +.+.+.
T Consensus       233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d-s~~~sl  309 (792)
T KOG1963|consen  233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD-SDLYSL  309 (792)
T ss_pred             eccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCC-CCeEEE
Confidence            7443 234455667788999999999999999 99999999999999999988 4556667889999999999 888888


Q ss_pred             EeCCCeEEEEeCCCCCceeeeccC-----------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc--------
Q 021121          168 ASGDCTLRIWDVREMGSTMIIPAH-----------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP--------  228 (317)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------  228 (317)
                      ...|..|.+....+.+....+.+.           ..-.+.++++| ..+.++-.+..|.|.+||+.+.+..        
T Consensus       310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~  388 (792)
T KOG1963|consen  310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE  388 (792)
T ss_pred             EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence            889999999987665544433321           22345677777 5566666667777777776532210        


Q ss_pred             -----------------------------------------------------------EEEEecCCCceeEEEecCC-C
Q 021121          229 -----------------------------------------------------------IAVLNGHGYAVRKVKFSPH-R  248 (317)
Q Consensus       229 -----------------------------------------------------------~~~~~~~~~~v~~~~~~~~-~  248 (317)
                                                                                 .....+|...+...++.+. .
T Consensus       389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r  468 (792)
T KOG1963|consen  389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR  468 (792)
T ss_pred             cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence                                                                       0011245544444444433 3


Q ss_pred             CeeEEeeecCCeEEEEeccccc---------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          249 RNLLASCSYDMTVCLWDFMVED---------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       249 ~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ...+++++.||.+++|-+...+         .+...-..|..+++.++|+.| | .+++.+.|+.|.+||..+
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d-G-slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD-G-SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC-C-cEEEEecCCEEEEecCCC
Confidence            3268899999999999984433         122222247889999999997 4 677777899999999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.89  E-value=4.8e-21  Score=154.05  Aligned_cols=207  Identities=20%  Similarity=0.302  Sum_probs=165.6

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      ..++.++.||.+.+.+-    ..+.......|.+.+.+-.|+|+|. -|++++.||.|++|.- +|-...++.....+|.
T Consensus        76 d~~~i~s~DGkf~il~k----~~rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK----SARVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR  149 (737)
T ss_pred             ceEEEEcCCceEEEecc----cchhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence            47888899999999873    3366677889999999999999998 8999999999999984 4544445555678899


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      |++|.|+..+.+++.+  +.+.+=-+.....+...+.|++-|.++.|++ ..+++++|++|-..++||....  ++..-.
T Consensus       150 c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~--~Lf~S~  224 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA--NLFTSA  224 (737)
T ss_pred             EEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc--ccccCC
Confidence            9999999666666544  5666666666667778889999999999999 8999999999999999997653  466777


Q ss_pred             cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                      .|..+|++++|.|+ + +++.++. ++.++            -....+.|..++||+| +..++.|...|.+.+
T Consensus       225 ~~ey~ITSva~npd-~-~~~v~S~-nt~R~------------~~p~~GSifnlsWS~D-GTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-K-DYLLWSY-NTARF------------SSPRVGSIFNLSWSAD-GTQATCGTSTGQLIV  282 (737)
T ss_pred             hhccceeeeeeccc-c-ceeeeee-eeeee------------cCCCccceEEEEEcCC-CceeeccccCceEEE
Confidence            89999999999999 4 5666653 34441            1223567999999999 788888888887754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.5e-21  Score=147.92  Aligned_cols=255  Identities=14%  Similarity=0.157  Sum_probs=196.5

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC---CCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP---PTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTV  131 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v  131 (317)
                      ..+|.+.|+++.|+.++ .+|++|+.|..+++|+++..   +..+++.... .|.+.|.|++|...+. .+++|..+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCccee
Confidence            34789999999999997 69999999999999998642   2234554433 4668999999998776 99999999999


Q ss_pred             EEEEcCCCceeEEeec--cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-ce--eeeccCccceEEEEecCCCCc
Q 021121          132 KLWTVDRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-ST--MIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      ...|+++.+.+..+..  ..+.|+.+..+|. .+.|++.+.++.|.+||.+... +.  ...........++.|+|....
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            9999999988877753  2358999999999 8999999999999999998764 22  222334556789999998899


Q ss_pred             EEEEEecCCcEEEEEccCCCccEEEEec---C---CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc
Q 021121          207 LIASASVDKSIKIWDVRNYRVPIAVLNG---H---GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT  280 (317)
Q Consensus       207 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  280 (317)
                      +|++.+..+-+.+||.+....++....+   -   ...-.++.|+|.|.. |.+--....-.+||+-+....+.......
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~N~  287 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDHNP  287 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-ehhhhccCCCEEeeeecccceeEeccCCC
Confidence            9999999999999999987665543221   1   122357889999996 55555555567789888765555544222


Q ss_pred             ------ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCCC
Q 021121          281 ------EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRA  316 (317)
Q Consensus       281 ------~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  316 (317)
                            ..+.+++|..+  ..+++|+.+=.|++|.+...+.+
T Consensus       288 ~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds  327 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDS  327 (609)
T ss_pred             Ccceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccc
Confidence                  25677888764  56999999999999999876653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.89  E-value=1.7e-20  Score=141.68  Aligned_cols=231  Identities=12%  Similarity=0.120  Sum_probs=176.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ...+|+|.+|+++ ...++++..       +..|.||.......-...-....|...|+.+.|+|.. +.|++++.|..-
T Consensus         9 ~~~pitchAwn~d-rt~iAv~~~-------~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna   79 (361)
T KOG1523|consen    9 LLEPITCHAWNSD-RTQIAVSPN-------NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA   79 (361)
T ss_pred             ccCceeeeeecCC-CceEEeccC-------CceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence            3578999999995 444555444       6799999988766322222333789999999999997 589999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE----EeeccccceEEEEEecCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR----TFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~  161 (317)
                      ++|....+...++...+..+...++++.|+|..+ .|++|+....|.||-++....-.    .-+.+.+.|+++.|+|+ 
T Consensus        80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-  157 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-  157 (361)
T ss_pred             cccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-
Confidence            9999976677888888888999999999999987 99999999999999887543221    22346778999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCC-----CC-------------CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          162 SDVFCSASGDCTLRIWDVR-----EM-------------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~-----~~-------------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      +-++++|+.|+..++|..-     ..             +....+....+.+..+.|+| +++.|+-.+.|..+.+-|..
T Consensus       158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecC
Confidence            8899999999999999642     11             11222224456799999999 99999999999999999988


Q ss_pred             CCCccEEEEecCCCceeEEEecCCC
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHR  248 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~  248 (317)
                      ...+.+.......-+..++.|-.+.
T Consensus       237 ~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  237 GPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             CCchhccchhhccCCceeeEeecCC
Confidence            7764444443333566777775543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.8e-21  Score=147.02  Aligned_cols=193  Identities=20%  Similarity=0.233  Sum_probs=158.5

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC-CCCeEEEEeCCCeEEEEeCCCCCceee--eccCc-cceE
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR-HSDVFCSASGDCTLRIWDVREMGSTMI--IPAHE-FEIL  196 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~-~~v~  196 (317)
                      .++++...|.|++||..+++.+..+++++..++.+.|... .++.+.+|+.||+|++||+|.......  ...+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            6888888999999999999999999999999999999874 578899999999999999998754433  33343 4677


Q ss_pred             EEEecCCCCcEEEEEec----CCcEEEEEccCCCccEE-EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-
Q 021121          197 ACDWNKYDDCLIASASV----DKSIKIWDVRNYRVPIA-VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-  270 (317)
Q Consensus       197 ~i~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-  270 (317)
                      +++..- .++++++|++    +-.+.+||.|+.++++. ....|...|++++|+|..+++|++|+.||.|.+||+.... 
T Consensus       122 ~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  122 CLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             EeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            787765 7778888763    55799999999887444 4567999999999999999999999999999999987653 


Q ss_pred             -ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          271 -ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       271 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                       ..+.....|...|..+.|...+-+.|.+-+..+...+|+++...
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence             22334446777899999998744578888999999999998653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.88  E-value=1.2e-19  Score=139.60  Aligned_cols=236  Identities=16%  Similarity=0.205  Sum_probs=177.9

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC--CEEEEEEcCC
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--DTVKLWTVDR  138 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~  138 (317)
                      ..+..+.|+.+. ..|..|+.|| .++|+.+..   ............|..+-|+..   +++..+.+  ..+++++++.
T Consensus         6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~---~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPF---EKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             cceeeeeeccce-eEEEccCCCc-eeEEecCch---HHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEccc
Confidence            456777798886 6888999988 788887643   222222233456777778743   55544433  4599999998


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCCCcEEEEEe--c
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYDDCLIASAS--V  213 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~--~  213 (317)
                      +..+..+. ...+|.++.++.   +.|+++-.+. |+|||+++++.+.++..   +...+.++..++ .+.+++.-+  .
T Consensus        78 ~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t  151 (391)
T KOG2110|consen   78 KTTICEIF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTT  151 (391)
T ss_pred             CceEEEEe-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCC
Confidence            88888776 567799999984   4566665554 99999999999887753   344455555555 555776532  4


Q ss_pred             CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeeecc-cceeEeEEEEec
Q 021121          214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYDHH-TEFAVGVDMSVL  291 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~  291 (317)
                      .|.|.+||..+.+ ++..+..|.+++.+++|+++|. +||+++..|+ |||+.+.+++.+...-++- ...|.+++|+|+
T Consensus       152 ~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  152 SGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CceEEEEEcccce-eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            5889999999866 5888999999999999999999 8999999887 8999999988544333332 346899999999


Q ss_pred             cCCeEEEeecCCcEEEEecCCC
Q 021121          292 VEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       +.+|++.|..++|++|+++..
T Consensus       230 -s~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  230 -SQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             -CCeEEEecCCCeEEEEEeccc
Confidence             889999999999999999764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.88  E-value=4e-20  Score=138.13  Aligned_cols=298  Identities=19%  Similarity=0.248  Sum_probs=209.3

Q ss_pred             ceeEEEEecCCCCeEEEEEeccccc-----ccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecC---CCCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGI-----LGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSE---SHDSLLIAA   79 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~-----~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~   79 (317)
                      ++.+++-.+   +.+++++...-..     ...|++.+|++...+. .+..++..+ ...+..|.|..   ++...++-+
T Consensus        16 ~~C~l~~~~---~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a   91 (339)
T KOG0280|consen   16 PICCLCHTR---NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDA   91 (339)
T ss_pred             Ccccccccc---ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeec
Confidence            344444444   4666666543111     2578999999987652 123334333 34678888873   343467778


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccCCc---ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce--eEEeeccccceEE
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEHTR---EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS--VRTFKEHAYCVYN  154 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~  154 (317)
                      ...|.|.++..........+..+..-.-   ...++.|++.+. .++++..+|.+.+-+......  .+.++.|..+.+.
T Consensus        92 ~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt  170 (339)
T KOG0280|consen   92 HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT  170 (339)
T ss_pred             cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence            8899999999775432222222222221   345788998887 788888899999766655543  3478899999999


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCC-Cceee-eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      ..|+..+++++.+|++|+.+..||+|.. +.+.. .+.|...|.+|.-+|..+.++++|+.|..|++||.|+..+|+..-
T Consensus       171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~  250 (339)
T KOG0280|consen  171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA  250 (339)
T ss_pred             eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence            9999998999999999999999999943 33332 456888999999999889999999999999999999877766554


Q ss_pred             ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-c---eeeeeecccceeEeEEEEeccCCeEEEee-cCCcEE-
Q 021121          233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-A---LVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVY-  306 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~-  306 (317)
                      . -.+.|+.+.++|.-...+..+..-+-.+|-+..... +   .......|.+-.++-.|... ...|+|++ .|+.++ 
T Consensus       251 ~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~  328 (339)
T KOG0280|consen  251 K-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQ  328 (339)
T ss_pred             c-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc-cceeeeeeccccceee
Confidence            3 347899999999654434444444447888776654 1   34556678888888888654 56888876 688756 


Q ss_pred             EEecCCC
Q 021121          307 VWQQGMD  313 (317)
Q Consensus       307 ~w~~~~~  313 (317)
                      +|-.-++
T Consensus       329 ~Wl~~t~  335 (339)
T KOG0280|consen  329 LWLHITG  335 (339)
T ss_pred             eeeeccC
Confidence            8865443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.88  E-value=4.6e-19  Score=145.46  Aligned_cols=252  Identities=12%  Similarity=0.146  Sum_probs=160.9

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +....+..++++|  +++++.++..     .++.|.+|+++... .+..............++|+|+++.++++...++.
T Consensus        32 ~~~~~~~~l~~sp--d~~~lyv~~~-----~~~~i~~~~~~~~g-~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~  103 (330)
T PRK11028         32 DVPGQVQPMVISP--DKRHLYVGVR-----PEFRVLSYRIADDG-ALTFAAESPLPGSPTHISTDHQGRFLFSASYNANC  103 (330)
T ss_pred             ecCCCCccEEECC--CCCEEEEEEC-----CCCcEEEEEECCCC-ceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCe
Confidence            3445677899999  4555444332     17899999997432 23333333344467789999998544444445899


Q ss_pred             EEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-----ee-ccccceEEEEE
Q 021121           85 VKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-----FK-EHAYCVYNATW  157 (317)
Q Consensus        85 i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-----~~-~~~~~v~~~~~  157 (317)
                      |.+|+++..... .....+. +.....+++++|+++.++++...++.|.+||+++...+..     .. .....+..++|
T Consensus       104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~  182 (330)
T PRK11028        104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF  182 (330)
T ss_pred             EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence            999999743211 2222222 2345677889999984556667789999999986432211     11 12344678999


Q ss_pred             ecCCCCeEEEEeC-CCeEEEEeCCCC--C--ceeeeccC------ccceEEEEecCCCCcEEEEEec-CCcEEEEEccCC
Q 021121          158 NPRHSDVFCSASG-DCTLRIWDVREM--G--STMIIPAH------EFEILACDWNKYDDCLIASASV-DKSIKIWDVRNY  225 (317)
Q Consensus       158 ~~~~~~~l~~~~~-dg~i~i~d~~~~--~--~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~  225 (317)
                      +|+ +++++++.. ++.|.+||++..  +  ....+...      ......+.++| ++++++++.. ++.|.+|++...
T Consensus       183 ~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        183 HPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence            999 677766655 899999999742  2  22222211      11234688999 8888888754 689999999654


Q ss_pred             CccEE---EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          226 RVPIA---VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       226 ~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .....   .... ......+.++|++++++++...+++|.+|++..
T Consensus       261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            32121   1111 234568999999996555555689999998753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.2e-21  Score=156.57  Aligned_cols=259  Identities=18%  Similarity=0.190  Sum_probs=187.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC----Ccceeee-eecCCCCeeEEEecCCCCCeEEEEE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA----PALTELV-AFDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      |.+.+++++|+|. ...++.+..       +|.|.+|+++...    ..+.++. ...|.++|.|++..+++ ..+++|+
T Consensus       293 ~~d~ir~l~~~~s-ep~lit~se-------d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg  363 (577)
T KOG0642|consen  293 HDDCIRALAFHPS-EPVLITASE-------DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGG  363 (577)
T ss_pred             chhhhhhhhcCCC-CCeEEEecc-------ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeec
Confidence            5677889999995 344444443       8999999994321    2233343 34799999999999998 5999999


Q ss_pred             cCCeEEEEEeCCCCC-------CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec--cccc
Q 021121           81 ADGSVKIYDTALPPT-------ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYC  151 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~  151 (317)
                      .||+|+.|++.....       ......+.+|.+.|+.+++++... .|++++.||+++.|+...... ..+..  ..+.
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            999999997763211       123446779999999999998876 799999999999999876655 33332  2234


Q ss_pred             eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-------CccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-------HEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      ..++.+-.....+.++...-+.--++++........+..       ....+.-+.++| ...+.+++.+|+.|+++|..+
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc
Confidence            566666554334444444444444444444433333321       123467888999 889999999999999999998


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      +. ++.....|...++++++.|+|. +|++++.|+.+++|.+.... ++.....|
T Consensus       521 ~~-~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~-~~~es~~~  572 (577)
T KOG0642|consen  521 GK-ILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKT-CVLESTAH  572 (577)
T ss_pred             cc-cchheeeccceecceeecCCCc-eEEeecCCceeehhhccchh-eeeccccc
Confidence            76 4778888999999999999999 69999999999999987654 33343334

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=4.6e-21  Score=141.02  Aligned_cols=244  Identities=19%  Similarity=0.219  Sum_probs=178.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...++++.|-.  ++++..+..       .|-|.+|+++......  .....+...|+.+.--|++  .+.+-+.|+.+
T Consensus        13 ~~~~v~s~~fqa--~~rL~sg~~-------~G~V~~w~lqt~r~~~--~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L   79 (323)
T KOG0322|consen   13 HSSSVTSVLFQA--NERLMSGLS-------VGIVKMWVLQTERDLP--LIRLFGRLFITNLQSIPND--SLDTQGRDPLL   79 (323)
T ss_pred             ccchheehhhcc--chhhhcccc-------cceEEEEEeecCccch--hhhhhccceeeceeecCCc--chhhcCCCceE
Confidence            556778888887  566555554       8999999999876321  2222466788999888874  67888899999


Q ss_pred             EEEEeCCC---------------------CCCCCc---eee--------------------------ccCCcceEEEEEe
Q 021121           86 KIYDTALP---------------------PTANPI---RSL--------------------------HEHTREVHSADYN  115 (317)
Q Consensus        86 ~v~~~~~~---------------------~~~~~~---~~~--------------------------~~~~~~v~~~~~~  115 (317)
                      .+|++...                     .+.+..   ..+                          ....+.+.|..+.
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            99988652                     000000   000                          0112345555542


Q ss_pred             cC-C-CCEEEEEcCCCEEEEEEcCCCcee----------EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121          116 PT-R-RDSFITSSWDDTVKLWTVDRPTSV----------RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG  183 (317)
Q Consensus       116 ~~-~-~~~l~~~~~dg~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (317)
                      .+ + ..++++|-.+|.+.+||+.++..+          .....|..+|.++.+.+. .+.=++|+.+..+..|+++...
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeecccc
Confidence            22 2 226778889999999999987333          334468899999999987 5556688888889999887542


Q ss_pred             c----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          184 S----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       184 ~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      .    ...+......+..+.+-| +++.+|+++.|+.||||..++.+ ++..+..|...|++++|+|+.. ++|+++.|+
T Consensus       239 gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~-lmAaaskD~  315 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE-LMAAASKDA  315 (323)
T ss_pred             CcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-hhhhccCCc
Confidence            1    112222344678889999 99999999999999999999976 6899999999999999999977 899999999


Q ss_pred             eEEEEec
Q 021121          260 TVCLWDF  266 (317)
Q Consensus       260 ~i~vwd~  266 (317)
                      .|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=5.2e-20  Score=143.16  Aligned_cols=250  Identities=21%  Similarity=0.319  Sum_probs=186.1

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC------CceeeccCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN------PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV  131 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  131 (317)
                      ....++..+.|.+++.+.+++|+.|..|++|.+.......      ....+..|...|+++.|+|+|. ++++|+.+|.|
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v   89 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEV   89 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceE
Confidence            4567899999999886699999999999999987654332      2345678999999999999998 99999999999


Q ss_pred             EEEEcC--------C--------CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121          132 KLWTVD--------R--------PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI  195 (317)
Q Consensus       132 ~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  195 (317)
                      .+|-..        +        ....+.+.+|...+..++|+|+ ++.+++++.|..+++||+..+.....+..|...+
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv  168 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV  168 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEeecccccccc
Confidence            999765        2        1223456678999999999999 8999999999999999999999999999999999


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-------------------cCC----CceeEEEecCCCCeeE
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-------------------GHG----YAVRKVKFSPHRRNLL  252 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------------------~~~----~~v~~~~~~~~~~~~l  252 (317)
                      ..++|.| -.+++++-+.|...+.+++...+. .....                   -|.    .-...++|+|+|. +|
T Consensus       169 qgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~-~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-ll  245 (434)
T KOG1009|consen  169 QGVAWDP-LNQYVASKSSDRHPEGFSAKLKQV-IKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LL  245 (434)
T ss_pred             ceeecch-hhhhhhhhccCcccceeeeeeeee-eeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EE
Confidence            9999999 889999999888777777654221 11000                   011    2346789999998 67


Q ss_pred             Eeeec----C-----CeEEEEecccccceeeeeecccceeEeEEEEecc----------------CCeEEEeecCCcEEE
Q 021121          253 ASCSY----D-----MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV----------------EGLLASTGWDELVYV  307 (317)
Q Consensus       253 ~~~~~----d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~l~s~~~dg~i~~  307 (317)
                      ++.+.    .     +..++|+-...+.+...+.....+...+.|+|--                -+++++......|++
T Consensus       246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv  325 (434)
T KOG1009|consen  246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV  325 (434)
T ss_pred             EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence            65531    1     2234555444444555566666666666666630                113333334567899


Q ss_pred             EecCC
Q 021121          308 WQQGM  312 (317)
Q Consensus       308 w~~~~  312 (317)
                      ||...
T Consensus       326 ydtq~  330 (434)
T KOG1009|consen  326 YDTQT  330 (434)
T ss_pred             ecccc
Confidence            99875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.4e-20  Score=149.58  Aligned_cols=296  Identities=18%  Similarity=0.251  Sum_probs=226.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~   84 (317)
                      |...|..+.|+.  .+.++++++.      |..|.+||.....+.+...  .+|...|...+|-|. +..-+++++.||.
T Consensus       141 H~GcVntV~FN~--~Gd~l~SgSD------D~~vv~WdW~~~~~~l~f~--SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  141 HKGCVNTVHFNQ--RGDVLASGSD------DLQVVVWDWVSGSPKLSFE--SGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             CCCccceeeecc--cCceeeccCc------cceEEeehhhccCcccccc--cccccchhhhhccCCCCCcCceeccccCc
Confidence            788999999999  7888888887      8899999999877433322  278888888889885 4467999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---cccc---ceEEEEEe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---EHAY---CVYNATWN  158 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~---~v~~~~~~  158 (317)
                      |++=.+...+..+....+..|.++|..++.-|+.+.-|.+++.|+.+.-+|++.+.....+.   .+..   ....++..
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            99988776544444556678999999999999999899999999999999998875433332   2233   57889999


Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCCc------eeeec------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121          159 PRHSDVFCSASGDCTLRIWDVREMGS------TMIIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      |.+.+.+++++.|-.+++||.+.-..      +..+.      .....|++++|+. ++.-+.++..|-.|++|....+.
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEecccccc
Confidence            99888999999999999999875322      12221      2234589999997 66666666778889999543221


Q ss_pred             c-----------cEE-EEecCC--CceeEEEec-CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          227 V-----------PIA-VLNGHG--YAVRKVKFS-PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       227 ~-----------~~~-~~~~~~--~~v~~~~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      -           .+. .+++|.  ..|..+-|- |... |+++|+.-|.|.||+-.+++ +++.+.+-..-|+|+.=+|.
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCC
Confidence            1           112 256664  357777764 4555 89999999999999987776 67777777778999998887


Q ss_pred             cCCeEEEeecCCcEEEEecCCCCC
Q 021121          292 VEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                       --+||++|-|.-|+||.-.+..+
T Consensus       448 -~PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  448 -LPVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             -CchhhccCCccceeeecCCcccc
Confidence             66999999999999998755444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.7e-19  Score=148.99  Aligned_cols=291  Identities=16%  Similarity=0.175  Sum_probs=194.6

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC-CCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP-AAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      .|...+++.++||  .+++++++..      ||+|.+|.--. ...........=|...|.+++|+++| .+|++|+.+|
T Consensus       203 ~Htf~~t~~~~sp--n~~~~Aa~d~------dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~  273 (792)
T KOG1963|consen  203 HHTFNITCVALSP--NERYLAAGDS------DGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREG  273 (792)
T ss_pred             hhcccceeEEecc--ccceEEEecc------CCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccce
Confidence            4566689999999  7888888876      99999998654 22223333333477799999999999 5999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-----------cccce
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-----------HAYCV  152 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~v  152 (317)
                      .+.+|.+.+++    ..-+..-.++|..+.++||+. +.+....|..|.+....+.+....+.+           ..+-.
T Consensus       274 VLv~Wq~~T~~----kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~  348 (792)
T KOG1963|consen  274 VLVLWQLETGK----KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT  348 (792)
T ss_pred             EEEEEeecCCC----cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence            99999998762    333455678999999999998 777778899999998765544333322           23446


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee--------------------------------------------
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII--------------------------------------------  188 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------------  188 (317)
                      +.++++|. .+.++-.+..|.|.+||+.+.+.+..+                                            
T Consensus       349 t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  349 TGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             eeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence            67788886 666777788888888887543222111                                            


Q ss_pred             ------------------------ccCccceEEEEec-CCCCcEEEEEecCCcEEEEEccCCCc---------cEEEEec
Q 021121          189 ------------------------PAHEFEILACDWN-KYDDCLIASASVDKSIKIWDVRNYRV---------PIAVLNG  234 (317)
Q Consensus       189 ------------------------~~~~~~v~~i~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~~~~~  234 (317)
                                              .+|+..+...++. +.....+++++.||.+++|-+...+.         +...-.-
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence                                    1233333333333 32333788999999999998843221         1222223


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc-CCeEEEeecCCcEEEEecCC
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV-EGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |..+++.++|+.||.  +++.+.|++|.+||..+...+.........++..+.+.... ....+.....+.+.+|++-.
T Consensus       508 ~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~  584 (792)
T KOG1963|consen  508 HKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS  584 (792)
T ss_pred             ccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence            788999999999997  55567799999999988443433333333444444443321 11233333456777887643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=5.8e-21  Score=160.91  Aligned_cols=241  Identities=20%  Similarity=0.339  Sum_probs=188.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      +|.+.|+|+.|...| .++++|+.|..++||..++.   .++....+|.+.|+.++.+.... ++++++.|..|++|.+.
T Consensus       188 gH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeecccc-ceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhh-hhhhcccCceEEEEecC
Confidence            688899999999998 79999999999999998766   88889999999999999998776 89999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee----c-cCcc-------------------
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----P-AHEF-------------------  193 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~~~-------------------  193 (317)
                      ++.++..+.+|++.|++++|+|- .    +.+.||++++||.+- .+....    . ....                   
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~-~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPR-A----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CCchHHHHhccccceeeeccCcc-c----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999999999999999999997 3    788999999999871 111000    0 0000                   


Q ss_pred             -------ceEEEEecCCCC-----------cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEee
Q 021121          194 -------EILACDWNKYDD-----------CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       194 -------~v~~i~~~~~~~-----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                             .+.+++|.. ..           .+.+++-.+-.+.+|++.++.. .+.+.+|...+..+.++|.+..+..++
T Consensus       337 d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             CcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhc
Confidence                   111222222 22           2223333445577788877653 677778999999999999998778899


Q ss_pred             ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.||...|||+-.+.+......+| +.+..-.||++ +..++....-|.++|......
T Consensus       415 g~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqd-gts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQD-GTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             cCCCceEeeecccCCcceeeeccc-ceeeccccCCC-CceEecCCCCCceEEeccCCC
Confidence            999999999998887555555564 55777899999 778888888898988876543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.1e-20  Score=149.88  Aligned_cols=216  Identities=19%  Similarity=0.198  Sum_probs=166.3

Q ss_pred             CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCC-CCeEEEEeCCCeEE
Q 021121           98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRH-SDVFCSASGDCTLR  175 (317)
Q Consensus        98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~  175 (317)
                      ....+.+|.+.|+|+.|+.+|. +|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|.. ..++++|..|..|+
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            3446789999999999999998 99999999999999998888777664 799999999999963 45788899999999


Q ss_pred             EEeCCC----------CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---------CC
Q 021121          176 IWDVRE----------MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---------HG  236 (317)
Q Consensus       176 i~d~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------~~  236 (317)
                      +||+..          .+....+..|...|..++..|...+.+.++++||+|+-+|++....+......         .-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999984          23445566788889999999956699999999999999999975432222111         11


Q ss_pred             CceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----------c------eeeee-eccc-----------ceeEeEE
Q 021121          237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----------A------LVGRY-DHHT-----------EFAVGVD  287 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----------~------~~~~~-~~~~-----------~~v~~~~  287 (317)
                      -...++..+|..+++|+.|+.|-..++||.+...           +      ++..+ .+|-           ..++-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            3467899999999999999999999999943211           0      11111 1121           1367789


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      |+|+|..+|++-+.+ .|+++|++.++.
T Consensus       281 fnpNGtElLvs~~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGE-HVYLFDVNEDKS  307 (758)
T ss_pred             ECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence            999966777777654 599999987654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=5.8e-19  Score=152.56  Aligned_cols=246  Identities=15%  Similarity=0.177  Sum_probs=178.6

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc---CCcceEEEEEec-CCCCEEEEEcCCCEEEEEEcC
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE---HTREVHSADYNP-TRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .-..+.|+|-.+ .++++...-.|++||.+.+   +.+..+..   ....|+.+.+-. +...++++|+.||.|+||+--
T Consensus      1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~---~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKG---RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCceeeecCCCc-eeEEcCCcceEEEEecccC---ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            456788999874 8888877788999999876   44444443   346788888743 334489999999999999643


Q ss_pred             CC-----ceeEEee-------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCC
Q 021121          138 RP-----TSVRTFK-------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYD  204 (317)
Q Consensus       138 ~~-----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~  204 (317)
                      ..     +.+..+.       +..+.-.-+.|....+ .|+++++-..|+|||.........+. +.+..++++.-+...
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            22     2222221       1112224567887744 45555668899999998776666554 334557777766556


Q ss_pred             CcEEEEEecCCcEEEEEccCCCc--cEEEEecCCCc--eeEEEecCCCCeeEEeeecCCeEEEEecccc-cceeeeeecc
Q 021121          205 DCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYA--VRKVKFSPHRRNLLASCSYDMTVCLWDFMVE-DALVGRYDHH  279 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~  279 (317)
                      ++.+++|..||.|++||.|....  .+...+.|+..  |..+.+.+.|-.-|++|+.||.|++||++.. .........|
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            89999999999999999997643  56777788877  9999999877545999999999999999984 2222233333


Q ss_pred             c--c-eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          280 T--E-FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       280 ~--~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .  + ..+++..+++ ..++|+|+. +.|+||++..++
T Consensus      1301 ~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEH-APIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             cccCccceeeeeccC-CCeeeecCc-ceEEEEecChhh
Confidence            2  3 5899999998 789999988 999999997654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.1e-18  Score=130.14  Aligned_cols=287  Identities=17%  Similarity=0.187  Sum_probs=186.5

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      +..+..++|+++ -..+++++.       |-.|++|+-+...   ...........|+|++|-|.+...|+.|+..| |.
T Consensus        98 ~~dlr~~aWhqH-~~~fava~n-------ddvVriy~ksst~---pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic  165 (445)
T KOG2139|consen   98 EIDLRGVAWHQH-IIAFAVATN-------DDVVRIYDKSSTC---PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC  165 (445)
T ss_pred             hcceeeEeechh-hhhhhhhcc-------CcEEEEeccCCCC---CceecchhhcceeEEEeccCCcceeeeeecce-eE
Confidence            345678999994 556666665       7799999977633   22222245667999999999888999999877 99


Q ss_pred             EEEeCCCCCCCC-----------ceeeccCCcceEEEEEecCCCCEEEEEc-CCCEEEEEEcCCCceeEEeeccccceEE
Q 021121           87 IYDTALPPTANP-----------IRSLHEHTREVHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTFKEHAYCVYN  154 (317)
Q Consensus        87 v~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~  154 (317)
                      +|..+.......           +....+| .+|+++.|++||. .+++++ .|..|.|||+.++..+.......+.+.-
T Consensus       166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl  243 (445)
T KOG2139|consen  166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL  243 (445)
T ss_pred             EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence            998765321111           1122344 6899999999998 777765 4678999999998877655445667899


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE-----
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI-----  229 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----  229 (317)
                      +.|+|+ +..+.+++-|+..++|+..+...........+.|...+|+| .|..|+.... |.-++|.+.-..++.     
T Consensus       244 LkwSPd-gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~  320 (445)
T KOG2139|consen  244 LKWSPD-GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRP  320 (445)
T ss_pred             EEEcCC-CCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCc
Confidence            999999 88888999999999996554433233333445899999999 6665544432 334455443211100     


Q ss_pred             ---------EEE------ec---CCCceeEEEecCCCCeeEEeeecCC--------eEEEEecccccceeeeeec--ccc
Q 021121          230 ---------AVL------NG---HGYAVRKVKFSPHRRNLLASCSYDM--------TVCLWDFMVEDALVGRYDH--HTE  281 (317)
Q Consensus       230 ---------~~~------~~---~~~~v~~~~~~~~~~~~l~~~~~d~--------~i~vwd~~~~~~~~~~~~~--~~~  281 (317)
                               ..+      .+   -.+.+.+++|.|.|. +|++.-..+        .|.+||.+..-.....+-+  ...
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge  399 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE  399 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC
Confidence                     000      01   145788999999999 576655433        3667777654322111111  111


Q ss_pred             eeEeEEEEecc--CCeEEEeecCCcEEEEecC
Q 021121          282 FAVGVDMSVLV--EGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       282 ~v~~~~~~~~~--~~~l~s~~~dg~i~~w~~~  311 (317)
                      ....++|+|..  +.+|..+=..|.+.-|++.
T Consensus       400 ~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  400 YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            24456666642  3355556567888877764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=4.9e-19  Score=149.70  Aligned_cols=236  Identities=12%  Similarity=0.139  Sum_probs=157.2

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSA  112 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~  112 (317)
                      +..|.+||.+...  ...+  ..+...+...+|+|+|+ .|+..+.+   ..|.+||+..+. ...+..+.+|   ...+
T Consensus       183 ~~~i~i~d~dg~~--~~~l--t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFN--QFIV--NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAP  253 (429)
T ss_pred             eEEEEEECCCCCC--ceEe--ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCce
Confidence            4689999987654  2222  25667899999999995 66665543   369999987641 1223333333   3468


Q ss_pred             EEecCCCCEEEE-EcCCCEEEEE--EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-ceeee
Q 021121          113 DYNPTRRDSFIT-SSWDDTVKLW--TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-STMII  188 (317)
Q Consensus       113 ~~~~~~~~~l~~-~~~dg~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~  188 (317)
                      +|+|+|+ .|+. .+.+|.+.||  |+.+++ ...+..+...+....|+|++..+++++..+|...+|+++... ....+
T Consensus       254 ~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        254 AFSPDGS-RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             eECCCCC-EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            9999998 5555 4567865555  665554 345555666788999999943445455567888888875432 22222


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                       .+..  .+..|+| +++.++..+.++ +.+||+.+++.  ..+... .....+.|+|+++ +|+.++.++.+.+|++.+
T Consensus       332 -~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        332 -GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGST--EVLSST-FLDESPSISPNGI-MIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             -cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCe--EEecCC-CCCCCceECCCCC-EEEEEEcCCCceEEEEEE
Confidence             3333  4678999 888888877655 66699987653  222222 1335688999999 688788888888887643


Q ss_pred             -ccceeeeeecccceeEeEEEEec
Q 021121          269 -EDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       269 -~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                       .......+..|.+.+...+|+|-
T Consensus       403 ~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceEEccCCCCCCCCcccCCC
Confidence             22356677778888899999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=149.12  Aligned_cols=233  Identities=17%  Similarity=0.325  Sum_probs=175.9

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      .|..++|-|||..+++++  +..+.+||...+   ..+.++++|+..|+|++|+.+|+ .+++|+.|..|.+|..+-.. 
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG-   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG-   86 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCc---ccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccc-
Confidence            799999999996444444  457999999877   78889999999999999999999 99999999999999864322 


Q ss_pred             eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121          142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d  221 (317)
                      +.++ .|.+.|.|+.|+|- .+.+++++-. ..-+|...+... ...+ ....+.+++|.. +|++++.|..+|+|.+-+
T Consensus        87 ~LkY-SH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   87 ILKY-SHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTN-DGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             eeee-ccCCeeeEeecCch-HHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecC-CCcEEEEeccCceEEeec
Confidence            2233 48899999999998 7888887754 467888765332 2222 345688999998 999999999999999986


Q ss_pred             ccCCCccEEE--EecCCCceeEEEecCCCC----eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121          222 VRNYRVPIAV--LNGHGYAVRKVKFSPHRR----NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       222 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      ..... ....  ..+.+++|.+++|+|...    ..++......++.++.+....  +..-+.-+-...++++.++ +.+
T Consensus       161 k~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--Igk~r~L~FdP~CisYf~N-GEy  236 (1081)
T KOG1538|consen  161 KNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--IGKDRALNFDPCCISYFTN-GEY  236 (1081)
T ss_pred             CCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee--ecccccCCCCchhheeccC-CcE
Confidence            54322 2222  234678999999999642    267778888888888775432  2222222334567888888 889


Q ss_pred             EEEeecCCcEEEEecC
Q 021121          296 LASTGWDELVYVWQQG  311 (317)
Q Consensus       296 l~s~~~dg~i~~w~~~  311 (317)
                      ++.||.|+.+.+|.-+
T Consensus       237 ~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             EEEccCCCceEEEeec
Confidence            9999999999888643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=144.71  Aligned_cols=208  Identities=15%  Similarity=0.265  Sum_probs=160.4

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI   99 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~   99 (317)
                      .+.|+++++       ||++.|.+-...-    +.....|.+.+.+-.|+|+| .-|++++.||.|++|.-..    ...
T Consensus        75 ~d~~~i~s~-------DGkf~il~k~~rV----E~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsG----MLR  138 (737)
T KOG1524|consen   75 SDTLLICSN-------DGRFVILNKSARV----ERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSG----MLR  138 (737)
T ss_pred             cceEEEEcC-------CceEEEecccchh----hhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccc----hHH
Confidence            345555555       8999988754432    12223688999999999999 5889999999999999442    344


Q ss_pred             eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121          100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       100 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      .++.....+|.|++|.|+.+..+++.+  +.+.|=.+.....+...+.|.+-|.++.|++. .+++++|++|-..++||-
T Consensus       139 Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  139 STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence            455567889999999999986666655  56666666666777788999999999999999 899999999999999996


Q ss_pred             CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       180 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      . +..+..-..|+.+|++++|+| + ..++.++. .+++            ......+.|..++||+||.. +++|...|
T Consensus       216 ~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ-~a~gt~~G  278 (737)
T KOG1524|consen  216 Q-GANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQ-ATCGTSTG  278 (737)
T ss_pred             c-CcccccCChhccceeeeeecc-c-cceeeeee-eeee------------ecCCCccceEEEEEcCCCce-eeccccCc
Confidence            5 667777778999999999999 6 56665553 2333            22234568999999999995 88888888


Q ss_pred             eEEE
Q 021121          260 TVCL  263 (317)
Q Consensus       260 ~i~v  263 (317)
                      .+.+
T Consensus       279 ~v~~  282 (737)
T KOG1524|consen  279 QLIV  282 (737)
T ss_pred             eEEE
Confidence            7654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=8.4e-20  Score=142.74  Aligned_cols=198  Identities=19%  Similarity=0.232  Sum_probs=155.1

Q ss_pred             eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121           64 YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        64 ~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  143 (317)
                      .+++|+.+| ..+++|+.||.+|+|+....   ..+.....|.+.|.++.|+||++ .|++-+.| ..+||+.+++..+.
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhh
Confidence            678999997 69999999999999998765   66667778999999999999998 89999999 99999999996666


Q ss_pred             Eee--ccccceEEEEEecCC---C-CeEEEEeCCCeEEEEeCCCCCc-----eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          144 TFK--EHAYCVYNATWNPRH---S-DVFCSASGDCTLRIWDVREMGS-----TMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       144 ~~~--~~~~~v~~~~~~~~~---~-~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      ...  ........+.|+.++   . .+++.....+.|+.||+...+.     ..+.......|.+++.++ +|++++.|+
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT  300 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT  300 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence            554  223456677787762   1 2333334456677776643321     111122334699999999 999999999


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .||.|.+++..+.+.....-+.|...|+.+.|+|+.+ ++++.+.|..+.|..+.-.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEeec
Confidence            9999999999988765566678999999999999998 5888888999888877653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=1.1e-17  Score=128.94  Aligned_cols=197  Identities=15%  Similarity=0.219  Sum_probs=149.7

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      |.-+-|+.   ..+++.+-..     ...++++++.+..    .+.....+..|.++.++.+   .|+++-.+ .|.|||
T Consensus        49 IvEmLFSS---SLvaiV~~~q-----pr~Lkv~~~Kk~~----~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIyd  112 (391)
T KOG2110|consen   49 IVEMLFSS---SLVAIVSIKQ-----PRKLKVVHFKKKT----TICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYD  112 (391)
T ss_pred             EEEeeccc---ceeEEEecCC-----CceEEEEEcccCc----eEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEe
Confidence            44455665   3444444331     3568888887654    4555567788999999964   45555554 499999


Q ss_pred             eCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121           90 TALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                      ++..+-...+.....+...+.++.+++.+. +++-=  ...|.|.+||+.+-+....+..|++++-+++|+++ |.++|+
T Consensus       113 I~~MklLhTI~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~-G~llAT  190 (391)
T KOG2110|consen  113 IKDMKLLHTIETTPPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD-GTLLAT  190 (391)
T ss_pred             cccceeehhhhccCCCccceEeeccCCCCc-eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC-CCEEEE
Confidence            998733333333444566677777776655 55532  34689999999999999999999999999999999 999999


Q ss_pred             EeCCCe-EEEEeCCCCCceeeeccCc--cceEEEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121          168 ASGDCT-LRIWDVREMGSTMIIPAHE--FEILACDWNKYDDCLIASASVDKSIKIWDVRNY  225 (317)
Q Consensus       168 ~~~dg~-i~i~d~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~  225 (317)
                      +++.|+ ||++.+.+++.+..++...  ..|.+++|+| ++++|++.+..++|++|.+...
T Consensus       191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEeccc
Confidence            999998 7999999999988887433  3588999999 9999999999999999998764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=2.2e-20  Score=147.61  Aligned_cols=269  Identities=17%  Similarity=0.248  Sum_probs=209.7

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      .+..+.+.++.  +++.++.++.      .|.|-.+|..+..    ....+.-.+.|.++.|-.+. .++|++- ...+.
T Consensus       129 eFGPY~~~ytr--nGrhlllgGr------KGHlAa~Dw~t~~----L~~Ei~v~Etv~Dv~~LHne-q~~AVAQ-K~y~y  194 (545)
T KOG1272|consen  129 EFGPYHLDYTR--NGRHLLLGGR------KGHLAAFDWVTKK----LHFEINVMETVRDVTFLHNE-QFFAVAQ-KKYVY  194 (545)
T ss_pred             ccCCeeeeecC--CccEEEecCC------ccceeeeecccce----eeeeeehhhhhhhhhhhcch-HHHHhhh-hceEE
Confidence            34567788888  6777777775      8999999998765    33444667789999999875 5777764 56799


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      |||-.    +..+..++. ...|..+.|.|--- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|. ...+-
T Consensus       195 vYD~~----GtElHClk~-~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~-NaVih  267 (545)
T KOG1272|consen  195 VYDNN----GTELHCLKR-HIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY-NAVIH  267 (545)
T ss_pred             EecCC----CcEEeehhh-cCchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc-cceEE
Confidence            99943    345555554 35788999999865 8889999999999999999999999888899999999998 78888


Q ss_pred             EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121          167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP  246 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~  246 (317)
                      +|...|+|.+|.....+++..+..|.++|.++++.+ +|++++|.+.|..++|||+|+..++.....  ..+...+++|.
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sq  344 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQ  344 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCcccccccc
Confidence            999999999999999999999999999999999999 999999999999999999999876444444  34677899987


Q ss_pred             CCCeeEEeeecCCeEEEEecccc-c-ceeeeeecc--cceeEeEEEEeccCCeEEEeecCC
Q 021121          247 HRRNLLASCSYDMTVCLWDFMVE-D-ALVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~~~-~-~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      .|  +||. +....+.||.=... . .....+-.|  .++|.++.|.|- ++.|-.|-..|
T Consensus       345 kg--lLA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-EDvLGIGH~~G  401 (545)
T KOG1272|consen  345 KG--LLAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY-EDVLGIGHAGG  401 (545)
T ss_pred             cc--ceee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH-HHeeeccccCC
Confidence            76  4554 45567999952211 1 111111122  358999999997 66666665554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.84  E-value=6.9e-19  Score=141.70  Aligned_cols=205  Identities=16%  Similarity=0.199  Sum_probs=150.2

Q ss_pred             eEEEEecCCCCCcceeeeee-cCCCCeeEEEec-----CCCCCeEEEEEcCCeEEEEEeCCCCCCCCce-eeccCCcceE
Q 021121           38 RVHVLDLSPAAPALTELVAF-DTADGVYDLAWS-----ESHDSLLIAAVADGSVKIYDTALPPTANPIR-SLHEHTREVH  110 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~~~~v~  110 (317)
                      .+++|++.........+... -......|=+|+     |.+ .-++.|-..|.|++.|....+..+... .....+..|+
T Consensus       145 ~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT  223 (636)
T KOG2394|consen  145 ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT  223 (636)
T ss_pred             eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence            78999987433212222111 111223334442     344 467788888999999876431111111 1112357899


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCC----------------------------ceeEEeeccccceEEEEEecCCC
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRP----------------------------TSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      |+.|-|.+...++++-.+|.+++||.+-.                            .++..+.-.++.|+.++|+|| +
T Consensus       224 ~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G  302 (636)
T KOG2394|consen  224 CIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-G  302 (636)
T ss_pred             EEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-C
Confidence            99999988888999999999999976321                            111122223457899999997 9


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      ++|++.+.||.++|||..+.+.+..++..-+...|++|+| |+++|++|++|..|.||.+...+ .+..-.+|+++|..+
T Consensus       303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erR-VVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERR-VVARGQGHKSWVSVV  380 (636)
T ss_pred             ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccce-EEEeccccccceeeE
Confidence            9999999999999999999888888877778899999999 99999999999999999998865 478888999999999


Q ss_pred             EecC
Q 021121          243 KFSP  246 (317)
Q Consensus       243 ~~~~  246 (317)
                      +|.|
T Consensus       381 aFDp  384 (636)
T KOG2394|consen  381 AFDP  384 (636)
T ss_pred             eecc
Confidence            9997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1.6e-18  Score=134.48  Aligned_cols=270  Identities=14%  Similarity=0.150  Sum_probs=198.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee----eeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL----VAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ....+.+++|.-++...++.+.+.      +-.+..+.+....- ...+    ........|..++.. +  ..|++|-.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~------~~~~~~~~~~E~~~-~s~~~~~~~~~l~~~~I~gl~~~-d--g~Litc~~  123 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSA------DDDLPKFVIEEFEI-SSSLDDAKTVSLGTKSIKGLKLA-D--GTLITCVS  123 (412)
T ss_pred             hhhhhhhheeecCCceeEeecccc------CcccccccccCCcc-ccccccccccccccccccchhhc-C--CEEEEEec
Confidence            345677888887777777777743      55666666655431 1111    122345567777665 2  37888889


Q ss_pred             CCeEEEEEeCCCCC-CCCceeeccCCcceEEEEEecCCCCEEEEEcCC--CEEEEEEcCCCceeEEeecc---------c
Q 021121           82 DGSVKIYDTALPPT-ANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--DTVKLWTVDRPTSVRTFKEH---------A  149 (317)
Q Consensus        82 dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~---------~  149 (317)
                      +|.+++|..+.+.. ..++..+..+ ..+..+.-.+..+.++++|+..  ..+.+||++..+.+..-+..         .
T Consensus       124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP  202 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP  202 (412)
T ss_pred             CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence            99999999885431 1233333333 5566777777777788889998  89999999988655543321         2


Q ss_pred             cceEEEEEecC-CCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121          150 YCVYNATWNPR-HSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       150 ~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      -.++++.|.+. ....|++++.-+.+++||.+.+ +++..+.-.+.++.++...| +++++++|..-+.+..||++.++.
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence            35678888764 2567999999999999999876 56778887889999999999 999999999999999999999887


Q ss_pred             cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121          228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      ....+.+..+.|+++..+|.++ ++++++-|..++|+|+.+.+.+...+-  ...++.+-+.+
T Consensus       282 ~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~  341 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRD  341 (412)
T ss_pred             eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhhhhh--hccccEEEecC
Confidence            6666888999999999999998 899999999999999999663333222  33456666644

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1e-18  Score=135.48  Aligned_cols=250  Identities=12%  Similarity=0.165  Sum_probs=195.1

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEE-cCCeEEEEEeCCCCCCCC---ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANP---IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK  132 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~v~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  132 (317)
                      .+....|..++|..+++.-++.+. .+..+..+.+........   .........+|..++... +  .|++|-.+|.+.
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g--~Litc~~sG~l~  128 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G--TLITCVSSGNLQ  128 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C--EEEEEecCCcEE
Confidence            345567889999877765555555 666777777665421111   112334466777776652 2  688999999999


Q ss_pred             EEEcCCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCC--CeEEEEeCCCCCceeeeccC---------ccceEE
Q 021121          133 LWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGD--CTLRIWDVREMGSTMIIPAH---------EFEILA  197 (317)
Q Consensus       133 iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~v~~  197 (317)
                      +|..+.+.    .+..+..+ ..+..+.-++..+.++++|+..  ..+.+||+++.+++..-+.-         .-.++.
T Consensus       129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            99988442    33344433 4577888888878888889999  89999999988655443321         123678


Q ss_pred             EEecCCC--CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121          198 CDWNKYD--DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       198 i~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      +.|-+ .  ...|++++.-+.+++||.+.++.|+..+.-...+++++...|.+. ++++|..-+.+..||.+.++.....
T Consensus       208 i~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  208 IRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             ceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccCceeeccc
Confidence            88887 5  789999999999999999999999999988889999999999998 7999999999999999999866666


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.+-.+.|+++..+|. ..+++++|-|+.|||+|+.+.
T Consensus       286 ~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cCCccCCcceEEEcCC-CceEEeeccceeEEEeecccc
Confidence            8899999999999997 789999999999999999873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=2.3e-17  Score=124.90  Aligned_cols=239  Identities=11%  Similarity=0.114  Sum_probs=166.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC------CEEEEEEc
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD------DTVKLWTV  136 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~  136 (317)
                      ...++|+.|. ..+++|..+| .+||+.+.-+...... +....-.+..+-|-.  +.+.++|+.+      ..|.|||=
T Consensus         8 ~lsvs~NQD~-ScFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    8 TLSVSFNQDH-SCFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             eeEEEEccCC-ceEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEec
Confidence            4559999886 6899998887 9999987431111111 111112333344432  2134444443      57999996


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC-CCCceeeeccCccceEEEEecCCC-CcEEEE-Eec
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYD-DCLIAS-ASV  213 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~-~~~  213 (317)
                      ....++.++. ...+|.++.+.++   .+++. .++.|++|... +.+.++.+.....|---++..|.. ..+||. |-.
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence            6667777775 6788999999865   44444 46789999987 456666655333222233334423 334443 345


Q ss_pred             CCcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeee-c-ccceeEeEEEE
Q 021121          214 DKSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYD-H-HTEFAVGVDMS  289 (317)
Q Consensus       214 d~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~~  289 (317)
                      -|.|+|-|+...+. +...+.+|.+.|.|++.+.+|. ++||+|..|+ |||||..+++.+ .+++ + ....|++|+||
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l-~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLL-QELRRGVDRADIYCIAFS  235 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEe-eeeecCCchheEEEEEeC
Confidence            68999999987654 3577889999999999999998 8999999998 899999998744 4443 2 24579999999


Q ss_pred             eccCCeEEEeecCCcEEEEecCCCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |+ ..+|+.+|+.|+|+|+.+...+
T Consensus       236 p~-~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  236 PN-SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CC-ccEEEEEcCCCeEEEEEeecCC
Confidence            99 8999999999999999997643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.83  E-value=8.3e-18  Score=147.50  Aligned_cols=295  Identities=14%  Similarity=0.156  Sum_probs=200.0

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc---ceeeeeec-CCCCeeEEEecCCCCCeEEEE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA---LTELVAFD-TADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      .+|...+..++.++. .+.++++++.      ||+|++|+..+-...   ......+. ....+.++.+.+.+ ..+|++
T Consensus      1045 ~Ehs~~v~k~a~s~~-~~s~FvsgS~------DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE-HTSLFVSGSD------DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred             hhccccccceeecCC-CCceEEEecC------CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence            346777778888884 3366666665      999999999754322   22333333 67789999999988 589999


Q ss_pred             EcCCeEEEEEeCCCCCCCC----ceeeccC-Ccce-EEEEEecCCCC-EEEEEcCCCEEEEEEcCCCceeEEee--cccc
Q 021121           80 VADGSVKIYDTALPPTANP----IRSLHEH-TREV-HSADYNPTRRD-SFITSSWDDTVKLWTVDRPTSVRTFK--EHAY  150 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~----~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~  150 (317)
                      +.||.|++.+++.-...+.    ......+ .+.+ ..-+|...... .++.+..-+.|..||++.......++  ...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            9999999999876211111    1111111 2333 33445433333 78888888999999998876555443  3457


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCC--cEEEEEe--cCCcEEEEEccCC
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDD--CLIASAS--VDKSIKIWDVRNY  225 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~--~~l~~~~--~d~~i~v~d~~~~  225 (317)
                      .|++++.+|. ++.++.|+..|.+.+||+|-+.++.... ++..+++.+..+|..+  ...++++  ..+.|.+|++.++
T Consensus      1197 ~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            7999999998 8899999999999999999888777654 3456788887777433  4444444  4678999999987


Q ss_pred             CccEEEEecC-------------------CCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--------------
Q 021121          226 RVPIAVLNGH-------------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--------------  272 (317)
Q Consensus       226 ~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--------------  272 (317)
                      .. ...+...                   .-......+...+. ++.+|+.|..|+.||....+..              
T Consensus      1276 ~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1276 LR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred             cc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccccccccCcccccccc
Confidence            53 2222211                   11111223332333 7999999999999997542210              


Q ss_pred             --------------e---------------------------eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          273 --------------V---------------------------GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       273 --------------~---------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                                    +                           ..-..|..+|++|++......+|++++.||.|++|.
T Consensus      1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                          0                           001246778999998877556999999999999995

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-19  Score=145.31  Aligned_cols=214  Identities=21%  Similarity=0.291  Sum_probs=163.3

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-ccCCcceEEEEEecCC-CCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTR-RDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iw  134 (317)
                      .+|.+.|+|++|+.+| .+|++|+.|-.+.|||.-..   +++..+ .+|...|.++.|-|.. ..++++|..|..|+++
T Consensus        47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             ccccceecceeecCCC-CEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3899999999999999 59999999999999998643   444443 4899999999998853 3378899999999999


Q ss_pred             EcCCC----------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----------eeeccCccc
Q 021121          135 TVDRP----------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----------MIIPAHEFE  194 (317)
Q Consensus       135 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~  194 (317)
                      |+...          +....+..|...|..++-.|++++.+.++++||+++-+|++....-          ..+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            99842          3445567889999999999998899999999999999999974211          111122234


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-----------------cEEEE-ecCC-----------CceeEEEec
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-----------------PIAVL-NGHG-----------YAVRKVKFS  245 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------------~~~~~-~~~~-----------~~v~~~~~~  245 (317)
                      ..|+..+|.+..+|++|+.|-..++||.+....                 ++..+ .+|-           ..++-+.|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            678999998899999999999999999542110                 11111 1121           125678899


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeee
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      |+|..+|++-+.+ .|+++|+...+.+...
T Consensus       283 pNGtElLvs~~gE-hVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  283 PNGTELLVSWGGE-HVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCCcEEEEeeCCe-EEEEEeecCCCCceee
Confidence            9999878776644 6999999887755443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.82  E-value=5.8e-18  Score=128.79  Aligned_cols=277  Identities=16%  Similarity=0.232  Sum_probs=188.9

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      -++|||  +++++++..       +-++.|-|..+-+    ..+.+.--..|..+.|..+...+|.....++.|.+|++.
T Consensus        13 ~c~fSp--~g~yiAs~~-------~yrlviRd~~tlq----~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   13 FCSFSP--CGNYIASLS-------RYRLVIRDSETLQ----LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             ceeECC--CCCeeeeee-------eeEEEEeccchhh----HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence            368999  788888887       4478887766533    333333345688899999887778888889999999997


Q ss_pred             CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121           92 LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD  171 (317)
Q Consensus        92 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (317)
                      ..   +-...+.....++.+++|+|+|+++|.+...+-.|.+|.+.+.+... ++..+..+..++|+|+ +++.+.++.-
T Consensus        80 Qp---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d-g~f~ai~sRr  154 (447)
T KOG4497|consen   80 QP---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD-GQFCAILSRR  154 (447)
T ss_pred             cc---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC-Cceeeeeecc
Confidence            65   55566677788999999999998889999999999999998765543 3334556788888888 6665544331


Q ss_pred             ------------------------------------CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          172 ------------------------------------CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       172 ------------------------------------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                                                          ..+.+||.--.-.+..+ .-.-.+..++|+| .++++++|+.|+
T Consensus       155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP-~~qflavGsyD~  232 (447)
T KOG4497|consen  155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSP-CNQFLAVGSYDQ  232 (447)
T ss_pred             cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEecc-ccceEEeeccch
Confidence                                                22334442111111111 1234688899999 999999999999


Q ss_pred             cEEEEEccCCCc---------------------------------------------------------c--EEEEe---
Q 021121          216 SIKIWDVRNYRV---------------------------------------------------------P--IAVLN---  233 (317)
Q Consensus       216 ~i~v~d~~~~~~---------------------------------------------------------~--~~~~~---  233 (317)
                      .+|+.+--+.+.                                                         +  +..++   
T Consensus       233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t  312 (447)
T KOG4497|consen  233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT  312 (447)
T ss_pred             hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence            998865421110                                                         0  00111   


Q ss_pred             ---cCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121          234 ---GHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       234 ---~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                         .....+.-++|++|.. ++++-...  +.+-+||++..+ +... -....+|....|.|. ...|+.+.....+++|
T Consensus       313 D~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~-l~av-LiQk~piraf~WdP~-~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  313 DFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLK-LHAV-LIQKHPIRAFEWDPG-RPRLVVCTGKSRLYFW  388 (447)
T ss_pred             CCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhh-hhhh-hhhccceeEEEeCCC-CceEEEEcCCceEEEE
Confidence               1123566799999987 57765422  568999998876 2222 233567999999998 4455555556679999


Q ss_pred             ecCC
Q 021121          309 QQGM  312 (317)
Q Consensus       309 ~~~~  312 (317)
                      ....
T Consensus       389 ~psg  392 (447)
T KOG4497|consen  389 APSG  392 (447)
T ss_pred             cCCC
Confidence            8764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=5.6e-20  Score=145.41  Aligned_cols=230  Identities=17%  Similarity=0.204  Sum_probs=187.5

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      +-..+.++.+| ..|+.|+..|.|..+|..+.   .....+. -...|.++.|..+.. +++++ ....++|||- .|..
T Consensus       131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~-~GtE  202 (545)
T KOG1272|consen  131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDN-NGTE  202 (545)
T ss_pred             CCeeeeecCCc-cEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchH-HHHhh-hhceEEEecC-CCcE
Confidence            56778999998 58888999999999999876   4444433 367889999987765 55554 5689999995 4777


Q ss_pred             eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121          142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d  221 (317)
                      ++.++.+ ..|..+.|.|. .-+|++++..|.++.-|+..++.+..+..-.+.+..++-+| -...+-+|...|+|.+|.
T Consensus       203 lHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  203 LHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             Eeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecC
Confidence            7777754 55999999998 78899999999999999999999999988888899999999 777899999999999999


Q ss_pred             ccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                      .... .++..+..|.++|.++++.++|. +++|.+.|..++|||++.-..+.....  ..+...+++|..   -+++.|.
T Consensus       280 P~sk-ePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqk---glLA~~~  352 (545)
T KOG1272|consen  280 PNSK-EPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQK---GLLALSY  352 (545)
T ss_pred             CCCc-chHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec--CCCccccccccc---cceeeec
Confidence            8874 46888888999999999999998 799999999999999998874443333  345677888853   3445556


Q ss_pred             CCcEEEEe
Q 021121          302 DELVYVWQ  309 (317)
Q Consensus       302 dg~i~~w~  309 (317)
                      ...|.+|.
T Consensus       353 G~~v~iw~  360 (545)
T KOG1272|consen  353 GDHVQIWK  360 (545)
T ss_pred             CCeeeeeh
Confidence            66789996

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=3.1e-16  Score=118.79  Aligned_cols=279  Identities=16%  Similarity=0.223  Sum_probs=180.7

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------   82 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------   82 (317)
                      ...+++|+.+ ..-++++..        .-.+||+.++-..... ....+..-.+..|-|-.  +.+.++|+.+      
T Consensus         7 ~~lsvs~NQD-~ScFava~~--------~Gfriyn~~P~ke~~~-r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~p   74 (346)
T KOG2111|consen    7 KTLSVSFNQD-HSCFAVATD--------TGFRIYNCDPFKESAS-RQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPP   74 (346)
T ss_pred             ceeEEEEccC-CceEEEEec--------CceEEEecCchhhhhh-hccccCchhhhhHhhhh--ceEEEecCCCCCCCCC
Confidence            4556999996 566676664        4789999987432111 11111112233333332  2344455443      


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-CCceeEEeeccccceEEEEEecCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ..|.|||=.   ...++..+. ...+|.++.+.++   .+++.- ++.|.+|... +.+.++.+.....+=--++..|..
T Consensus        75 NkviIWDD~---k~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   75 NKVIIWDDL---KERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ceEEEEecc---cCcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence            479999932   224554444 5789999999975   455555 5799999987 456666554322221123334432


Q ss_pred             CC-eEEE-EeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEecCCc-EEEEEccCCCccEEEEe-c-
Q 021121          162 SD-VFCS-ASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKS-IKIWDVRNYRVPIAVLN-G-  234 (317)
Q Consensus       162 ~~-~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~-~-  234 (317)
                      .. +|+. |-.-|.|++-|+...+.  ...+..|.+.|.|++.+. +|.++|+++..|+ |||||..+++. +..++ + 
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~  224 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL-LQELRRGV  224 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE-eeeeecCC
Confidence            33 3333 45679999999987655  577889999999999998 9999999999997 89999999875 55443 3 


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee-----------------------eeecccceeEeEEEEec
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG-----------------------RYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~  291 (317)
                      ....|.+++|||+.. +|+++|+-|+++||.++.......                       .+.-..+...-++|..+
T Consensus       225 d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~  303 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSE  303 (346)
T ss_pred             chheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCC
Confidence            346799999999998 799999999999998876331111                       11112334445566654


Q ss_pred             cCCeEEEeecCCcEEEEecC
Q 021121          292 VEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~  311 (317)
                       .+.++..+.||.-+=+.+.
T Consensus       304 -~nsvi~i~~Dgsy~k~~f~  322 (346)
T KOG2111|consen  304 -TNTVIAICADGSYYKFKFD  322 (346)
T ss_pred             -CCeEEEEEeCCcEEEEEec
Confidence             3566666677866554443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.9e-17  Score=132.24  Aligned_cols=283  Identities=14%  Similarity=0.188  Sum_probs=195.1

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEE-ecCCCCCeEEEEEc
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLA-WSESHDSLLIAAVA   81 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~   81 (317)
                      -|+++..-+.|..+|  +++++.+++..     --.|++||+..-..  +.-.  .....+..+. .+-|- ..++.-..
T Consensus        47 dfe~p~ast~ik~s~--DGqY~lAtG~Y-----KP~ikvydlanLSL--KFER--hlDae~V~feiLsDD~-SK~v~L~~  114 (703)
T KOG2321|consen   47 DFEMPTASTRIKVSP--DGQYLLATGTY-----KPQIKVYDLANLSL--KFER--HLDAEVVDFEILSDDY-SKSVFLQN  114 (703)
T ss_pred             hcCCccccceeEecC--CCcEEEEeccc-----CCceEEEEccccee--eeee--cccccceeEEEeccch-hhheEeec
Confidence            366778888999999  56666666543     56899999987542  1111  2233333333 34332 34555556


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      |.+|.+-..-.    .... +. -...-..++++.-...+++.| ....|+-++++.|..+..+....+.++++..++- 
T Consensus       115 DR~IefHak~G----~hy~-~R-IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-  186 (703)
T KOG2321|consen  115 DRTIEFHAKYG----RHYR-TR-IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-  186 (703)
T ss_pred             CceeeehhhcC----eeee-ee-cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCc-
Confidence            77776543211    1110 00 112234456654444344444 4568999999999999999888899999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeecc------Cc-----cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPA------HE-----FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA  230 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~-----~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  230 (317)
                      ..+|++|+.+|.|..||.+.......+..      +.     ..|+++.|+. ++-.+++|+.+|.+.+||++..+..+.
T Consensus       187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLV  265 (703)
T ss_pred             cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceee
Confidence            78999999999999999998766555432      22     2389999997 799999999999999999999775444


Q ss_pred             EEecCCCceeEEEecCCCC-eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          231 VLNGHGYAVRKVKFSPHRR-NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      .-.+..-+|..+.|.+.+. .-+++ .....++|||-.+++. ...+... ..+..+|+-|+ ..+++++-.++.+..|=
T Consensus       266 kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~-~asiEpt-~~lND~C~~p~-sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  266 KDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKP-MASIEPT-SDLNDFCFVPG-SGMFFTANESSKMHTYY  341 (703)
T ss_pred             cccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCc-eeecccc-CCcCceeeecC-CceEEEecCCCcceeEE
Confidence            4445567899999987632 23544 3467899999998874 4455543 44999999998 77888988887766654


Q ss_pred             c
Q 021121          310 Q  310 (317)
Q Consensus       310 ~  310 (317)
                      +
T Consensus       342 i  342 (703)
T KOG2321|consen  342 I  342 (703)
T ss_pred             c
Confidence            4

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=5.3e-17  Score=142.58  Aligned_cols=256  Identities=16%  Similarity=0.194  Sum_probs=175.8

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC----CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA----NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV  131 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  131 (317)
                      ...|...+..++.++....++++|+.||+|++|+...-...    ....++.....++.++...+.+. .+|.++.||.|
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSV 1122 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEcCCCeE
Confidence            34688888899988876579999999999999998753211    22233444567888999888887 89999999999


Q ss_pred             EEEEcCCCc-------eeEEeecc-ccce-EEEEEecCCCC-eEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEE
Q 021121          132 KLWTVDRPT-------SVRTFKEH-AYCV-YNATWNPRHSD-VFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACD  199 (317)
Q Consensus       132 ~iwd~~~~~-------~~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~  199 (317)
                      .+.+++...       +.+....+ .+.+ ..-++...... .++.+..-+.|..||++.......++  ...+.|++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            999987621       11111111 2223 33344444344 78888899999999999876655443  3446799999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEEccCCCccEEE-EecCCCceeEEEecCCCC--eeEEee-e-cCCeEEEEecccccceee
Q 021121          200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-LNGHGYAVRKVKFSPHRR--NLLASC-S-YDMTVCLWDFMVEDALVG  274 (317)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~l~~~-~-~d~~i~vwd~~~~~~~~~  274 (317)
                      .+| .++++++|+..|.+.+||+|=.. ++.. ..++..+++.+..+|..+  ...+++ + ..+.|.+|++.++.....
T Consensus      1203 idp-~~~WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1203 IDP-WCNWLVIGTSRGQLVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred             ecC-CceEEEEecCCceEEEEEeecCc-eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence            999 88999999999999999999654 3443 335567888888877544  344444 4 567899999988752211


Q ss_pred             eeec------------------ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          275 RYDH------------------HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       275 ~~~~------------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      ....                  +........+ ++.+..+++|+.|+.|+.||.....+
T Consensus      1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             EEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCccc
Confidence            1111                  1111111222 22356899999999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=5.7e-17  Score=124.86  Aligned_cols=228  Identities=19%  Similarity=0.257  Sum_probs=158.9

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP  139 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  139 (317)
                      -.+..++|++.- ..++++..|-.|++|+-+.    .....++ .....|+|++|-|.+...|+.|+. +-|.+|.....
T Consensus        99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss----t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t  172 (445)
T KOG2139|consen   99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT  172 (445)
T ss_pred             cceeeEeechhh-hhhhhhccCcEEEEeccCC----CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence            357889999864 6788999999999999654    2333333 345689999999998878888885 56999976532


Q ss_pred             ----ce----------eEEeeccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCCceeeeccCccceEEEEecCCC
Q 021121          140 ----TS----------VRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYD  204 (317)
Q Consensus       140 ----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~  204 (317)
                          ..          +....+| .+|++++|+++ +..+++++ .+..|.+||..++..+.......+.+.-+.|+| +
T Consensus       173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-d  249 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-D  249 (445)
T ss_pred             cccccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-C
Confidence                11          1112233 67999999999 66666655 577899999998876655544556788999999 9


Q ss_pred             CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce------------
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL------------  272 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------------  272 (317)
                      +.+|+++.-|+..++|..........-.. ..+.|...+|+|+|+.+|++.+..-.  +|.+.-.++.            
T Consensus       250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceee
Confidence            99999999999999996544332222223 33489999999999988877765544  4443221100            


Q ss_pred             --ee------eeec---ccceeEeEEEEeccCCeEEEeec
Q 021121          273 --VG------RYDH---HTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       273 --~~------~~~~---~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                        +.      ...+   -.+.+.+++|.|. +.+|++.-.
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDps-GeyLav~fK  365 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPS-GEYLAVIFK  365 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCC-CCEEEEEEc
Confidence              00      0001   1356889999999 777777543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=1.4e-19  Score=152.68  Aligned_cols=208  Identities=20%  Similarity=0.404  Sum_probs=164.2

Q ss_pred             CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121           98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW  177 (317)
Q Consensus        98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (317)
                      .+..+.+|...|+|+.|...|. ++++|+.|..++||.+++..++...++|.+.++.++.+.. ..++++++.|..|++|
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEE
Confidence            3445678999999999999998 9999999999999999999999999999999999999987 7889999999999999


Q ss_pred             eCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc-CCCc----c--------EEEE----------e-
Q 021121          178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR-NYRV----P--------IAVL----------N-  233 (317)
Q Consensus       178 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~----~--------~~~~----------~-  233 (317)
                      .+..+.++..+.+|.+.|++++|+| .    .+.+.||++++||.+ ....    +        ...+          . 
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence            9999999999999999999999999 3    377889999999988 1110    0        0000          0 


Q ss_pred             -----cCCCceeEEEecCCCC----------eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE
Q 021121          234 -----GHGYAVRKVKFSPHRR----------NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       234 -----~~~~~v~~~~~~~~~~----------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  298 (317)
                           .....+..++|....-          .+.+++-.+-.+++|++.++. +...+.+|...+..+.++|-+.....+
T Consensus       335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch-hhhhhcccccceeeeeecCCCcHhhhh
Confidence                 0001112222222221          123333345568889988876 567788999999999999987778889


Q ss_pred             eecCCcEEEEecCCC
Q 021121          299 TGWDELVYVWQQGMD  313 (317)
Q Consensus       299 ~~~dg~i~~w~~~~~  313 (317)
                      ++.||...|||+-..
T Consensus       414 ag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEG  428 (1113)
T ss_pred             ccCCCceEeeecccC
Confidence            999999999998654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=4.5e-17  Score=137.82  Aligned_cols=222  Identities=17%  Similarity=0.155  Sum_probs=145.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...+.+.+|||+ ..+++.+....    ++..|++||+..+.  ...+..  ..+....++|+|||..++++...+|.+
T Consensus       202 ~~~~v~~p~wSPD-G~~la~~s~~~----~~~~i~i~dl~tg~--~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        202 SSQPLMSPAWSPD-GSKLAYVSFEN----KKSQLVVHDLRSGA--RKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             CCCccccceEcCC-CCEEEEEEecC----CCcEEEEEeCCCCc--eEEEec--CCCccCceeECCCCCEEEEEEecCCcE
Confidence            4557889999995 33444443321    13579999997654  222222  223345789999995344444568877


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      .||.++...  .....+..+...+....|+|+|+.+++++..+|...+|+++... ....+ .+..  ....|+|+ ++.
T Consensus       273 ~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD-G~~  346 (429)
T PRK01742        273 NIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD-GKT  346 (429)
T ss_pred             EEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC-CCE
Confidence            777554321  23344556677788999999998455566667888888775432 22222 3333  45789999 777


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc--CCCccEEEEecCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~v~~~  242 (317)
                      ++..+.++ +.+||+.+++........  ...++.|+| ++++|+.++.++.+.+|++.  +++ ....+..|.+.+...
T Consensus       347 ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~-~~~~l~~~~g~~~~p  421 (429)
T PRK01742        347 LVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR-FKARLPGSDGQVKFP  421 (429)
T ss_pred             EEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC-ceEEccCCCCCCCCc
Confidence            77776655 566999887654322222  235678999 99999999999988888764  333 466777788888999


Q ss_pred             EecCC
Q 021121          243 KFSPH  247 (317)
Q Consensus       243 ~~~~~  247 (317)
                      +|+|-
T Consensus       422 ~wsp~  426 (429)
T PRK01742        422 AWSPY  426 (429)
T ss_pred             ccCCC
Confidence            99985

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.4e-16  Score=133.66  Aligned_cols=236  Identities=14%  Similarity=0.070  Sum_probs=151.4

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      ..|.+||.....  ...+  ..+...+...+|+|+++ .|+..+.   ...|.+|++..+   .. ..+....+...+..
T Consensus       184 ~~l~i~D~~g~~--~~~l--t~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g---~~-~~l~~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSDGYN--PQTI--LRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATG---QR-ELVASFRGINGAPS  254 (433)
T ss_pred             EEEEEECCCCCC--ceEe--ecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCC---CE-EEeccCCCCccCce
Confidence            468899886543  2222  24667799999999985 6665553   346999998764   21 22333344556789


Q ss_pred             EecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCCe--EEEEeCCCCCceeee
Q 021121          114 YNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCT--LRIWDVREMGSTMII  188 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~  188 (317)
                      |+|+|+.++++.+.+|  .|++||+.+++.. .+..+.......+|+|+ ++.++.++ .+|.  |+++|+.+++.. .+
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~-~l  331 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAE-RL  331 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeE-Ee
Confidence            9999985555666555  6999999887643 44445555677899999 66555544 4554  677777665533 23


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC--CeEEE
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCL  263 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~v  263 (317)
                      ..........+|+| +++.++..+.++   .|.+||+.+++.  ..+. +........|+|+|+.++++....  +.|.+
T Consensus       332 t~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        332 TFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             ecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            22333445789999 888887765443   599999977653  3333 333455779999999645444433  34777


Q ss_pred             EecccccceeeeeecccceeEeEEEEe
Q 021121          264 WDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       264 wd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      +++...  ....+..+.+.+...+|+|
T Consensus       408 ~~~~g~--~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        408 VSTDGR--VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EECCCC--ceEEcccCCCCCCCCccCC
Confidence            776443  3445555556677788876

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=134.07  Aligned_cols=163  Identities=18%  Similarity=0.331  Sum_probs=131.2

Q ss_pred             CceEEEEecCCCCCcceee---eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC------------------
Q 021121           36 NGRVHVLDLSPAAPALTEL---VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP------------------   94 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~------------------   94 (317)
                      .|.|++.|.....  ...+   ...-.+..|+|++|-|-++.+++++-.+|.+.+||.....                  
T Consensus       194 tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i  271 (636)
T KOG2394|consen  194 TGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAI  271 (636)
T ss_pred             cCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEE
Confidence            6788888865522  1111   1112346899999999888899999999999999764320                  


Q ss_pred             -------CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121           95 -------TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus        95 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                             ...++..+.--.+.|..++|+|||+ +||+.+.||.++|||..+.+.+..++..-+...|++|+|| ++++++
T Consensus       272 ~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD-GKyIvt  349 (636)
T KOG2394|consen  272 LTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD-GKYIVT  349 (636)
T ss_pred             eeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC-ccEEEe
Confidence                   0012222222345789999999998 9999999999999999998888888777788999999999 999999


Q ss_pred             EeCCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121          168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK  202 (317)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~  202 (317)
                      |++|-.|.||.+...+.+..-++|++.|..++|+|
T Consensus       350 GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            99999999999999999999999999999999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.77  E-value=2.1e-14  Score=118.10  Aligned_cols=274  Identities=14%  Similarity=0.132  Sum_probs=176.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc----CCeEEEEEeCCC-CCCCCceeeccCCcceE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA----DGSVKIYDTALP-PTANPIRSLHEHTREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~v~~~~~~-~~~~~~~~~~~~~~~v~  110 (317)
                      .+.|++|+++.....+..+...........++++|++ .+|.+...    +|.|..|++... .....+...........
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            3799999997666667666665566677889999998 57777665    579999998864 23334444443445566


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEE---ee----------ccccceEEEEEecCCCCeEEE-EeCCCeEE
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRT---FK----------EHAYCVYNATWNPRHSDVFCS-ASGDCTLR  175 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~  175 (317)
                      .++++|+++.++++...+|.|.++++... .....   +.          .......++.++|+ ++++++ .-....|.
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-g~~v~v~dlG~D~v~  169 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-GRFVYVPDLGADRVY  169 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-SSEEEEEETTTTEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC-CCEEEEEecCCCEEE
Confidence            79999999844444456999999999874 22221   11          11245789999999 555544 44456899


Q ss_pred             EEeCCCCCc-ee---ee-ccCccceEEEEecCCCCcEEE-EEecCCcEEEEEccCCCccE---EEEecC------CCcee
Q 021121          176 IWDVREMGS-TM---II-PAHEFEILACDWNKYDDCLIA-SASVDKSIKIWDVRNYRVPI---AVLNGH------GYAVR  240 (317)
Q Consensus       176 i~d~~~~~~-~~---~~-~~~~~~v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~---~~~~~~------~~~v~  240 (317)
                      +|++..... +.   .+ .......+.++|+| +++++. +...++.|.+|++....-.+   ......      .....
T Consensus       170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999977652 21   12 13445678999999 766654 45567789999998322112   112111      12567


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccc--c-ceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEecCCC
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVE--D-ALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQQGMD  313 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~  313 (317)
                      .|+++|++++++++.-..+.|.+|++...  . ..+..........+.++++|+ +++|+++ ..++.|.+|+++..
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETT
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCC
Confidence            89999999976666667889999999432  2 222333333445789999999 5665555 47889999998643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.6e-15  Score=128.15  Aligned_cols=235  Identities=13%  Similarity=0.068  Sum_probs=151.2

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE---cCCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV---ADGSVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      ..|.++|.+..+  .+.+.  .+...+...+|+|||+ .|+..+   .+..|.+|++..++ .+.+..+   .+.+....
T Consensus       179 ~~l~~~d~dg~~--~~~lt--~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~---~~~~~~~~  249 (429)
T PRK03629        179 YELRVSDYDGYN--QFVVH--RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA-VRQVASF---PRHNGAPA  249 (429)
T ss_pred             eeEEEEcCCCCC--CEEee--cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCC-eEEccCC---CCCcCCeE
Confidence            378888887654  22232  4566899999999995 555433   23568889987541 1222222   33345689


Q ss_pred             EecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC-CCe--EEEEeCCCCCceeee
Q 021121          114 YNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCT--LRIWDVREMGSTMII  188 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~  188 (317)
                      |+|+|+.++++.+.+|  .|.+||+++++..+ +..+...+....|+|+ ++.|+..+. ++.  |+++|+.+++. ..+
T Consensus       250 ~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l  326 (429)
T PRK03629        250 FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAP-QRI  326 (429)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCe-EEe
Confidence            9999984444545555  58999998876544 3334456788999999 666655554 444  55557665543 333


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe---EE
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT---VC  262 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---i~  262 (317)
                      ...........|+| +++.++..+.+   ..|.+||+.+++  ...+... .......|+|+|+. |+.++.++.   +.
T Consensus       327 t~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~~~~~p~~SpDG~~-i~~~s~~~~~~~l~  401 (429)
T PRK03629        327 TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-FLDETPSIAPNGTM-VIYSSSQGMGSVLN  401 (429)
T ss_pred             ecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-CCCCCceECCCCCE-EEEEEcCCCceEEE
Confidence            33344456789999 88888776543   358889988765  3333322 23456789999995 666665553   66


Q ss_pred             EEecccccceeeeeecccceeEeEEEEe
Q 021121          263 LWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       263 vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      ++++...  ....+..|.+.+...+|+|
T Consensus       402 ~~~~~G~--~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        402 LVSTDGR--FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEECCCC--CeEECccCCCCcCCcccCC
Confidence            6776433  3455667778888999987

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=5.1e-16  Score=131.24  Aligned_cols=237  Identities=13%  Similarity=0.109  Sum_probs=146.8

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-C--CeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-D--GSVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      ..|.++|.+...  ...+  ..+...+.+.+|+|+|. .|+..+. +  ..|.+||+..+   +. ..+....+.+....
T Consensus       176 ~~L~~~D~dG~~--~~~l--~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g---~~-~~l~~~~g~~~~~~  246 (427)
T PRK02889        176 YQLQISDADGQN--AQSA--LSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATG---RR-RVVANFKGSNSAPA  246 (427)
T ss_pred             cEEEEECCCCCC--ceEe--ccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCC---CE-EEeecCCCCccceE
Confidence            467777764433  2222  25667889999999985 6665543 2  45999998765   22 22333345566889


Q ss_pred             EecCCCCEEEEEcCCCEEEEEE--cCCCceeEEeeccccceEEEEEecCCCCeEE-EEeCCCeEEEEeC--CCCCceeee
Q 021121          114 YNPTRRDSFITSSWDDTVKLWT--VDRPTSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCTLRIWDV--REMGSTMII  188 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg~v~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~~~~  188 (317)
                      |+|+|+.++++.+.+|...+|.  +.++. ...+..+........|+|+ ++.++ ++..+|...+|.+  .+++. ..+
T Consensus       247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l  323 (427)
T PRK02889        247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPASGGAA-QRV  323 (427)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECCCCce-EEE
Confidence            9999984555677788766665  44443 4455545555677899999 55555 4444566666654  44432 222


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe--EEE
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT--VCL  263 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~v  263 (317)
                      ...........|+| +++.++..+.++   .|.+||+.+++.  ..+... .......|+|+++.++++....|.  +.+
T Consensus       324 t~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        324 TFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQV--TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             ecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCe--EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence            22223345678999 898888776554   599999987653  333322 234678999999965555544444  444


Q ss_pred             EecccccceeeeeecccceeEeEEEEec
Q 021121          264 WDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       264 wd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .++. + .....+..+.+.+...+|+|-
T Consensus       400 ~~~~-g-~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        400 VSSD-G-RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EECC-C-CceEEeecCCCCCCCCccCCC
Confidence            4553 2 234455556667788888873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.76  E-value=2.1e-15  Score=115.09  Aligned_cols=275  Identities=13%  Similarity=0.188  Sum_probs=180.4

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      +.|.-+.|..+ .-.++++...      ++.|.+|++...+-  ... .-....++..++|+|+|..+|.+...+-+|.+
T Consensus        49 dki~yieW~ad-s~~ilC~~yk------~~~vqvwsl~Qpew--~ck-Ideg~agls~~~WSPdgrhiL~tseF~lriTV  118 (447)
T KOG4497|consen   49 DKIVYIEWKAD-SCHILCVAYK------DPKVQVWSLVQPEW--YCK-IDEGQAGLSSISWSPDGRHILLTSEFDLRITV  118 (447)
T ss_pred             HHhhheeeecc-ceeeeeeeec------cceEEEEEeeccee--EEE-eccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence            44566888885 3344444454      89999999986652  111 11466789999999999889999999999999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-C-----------------------------------CEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-D-----------------------------------DTV  131 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----------------------------------g~v  131 (317)
                      |.+.+.    ....++-.+..+..++|+|+|+ +.+.++. |                                   ..+
T Consensus       119 WSL~t~----~~~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l  193 (447)
T KOG4497|consen  119 WSLNTQ----KGYLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL  193 (447)
T ss_pred             EEeccc----eeEEecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence            999864    2222333345567888999887 5444432 1                                   234


Q ss_pred             EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---------------------------
Q 021121          132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---------------------------  184 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------  184 (317)
                      .+||---.-.+..+. ..-.+..++|+|. ++++++|+.|+.+|+.+--+-+.                           
T Consensus       194 aVwd~~Leykv~aYe-~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q  271 (447)
T KOG4497|consen  194 AVWDNVLEYKVYAYE-RGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ  271 (447)
T ss_pred             EEecchhhheeeeee-eccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence            444422111111221 2245889999998 89999999999998865321000                           


Q ss_pred             ---------------------------------eee------eccCccceEEEEecCCCCcEEEEEecC--CcEEEEEcc
Q 021121          185 ---------------------------------TMI------IPAHEFEILACDWNKYDDCLIASASVD--KSIKIWDVR  223 (317)
Q Consensus       185 ---------------------------------~~~------~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~v~d~~  223 (317)
                                                       +..      +......+.-++|++ +..++++-...  +.+-+||++
T Consensus       272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq  350 (447)
T KOG4497|consen  272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQ  350 (447)
T ss_pred             hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEech
Confidence                                             000      011122466789999 88888876432  468999999


Q ss_pred             CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      ..+  +........+|....|+|...+ |+.+.....+.+|...... .+ ......-.|..++|.-. +..++-.+.|.
T Consensus       351 ~l~--l~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~psg~~-~V-~vP~~GF~i~~l~W~~~-g~~i~l~~kDa  424 (447)
T KOG4497|consen  351 NLK--LHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPR-VV-GVPKKGFNIQKLQWLQP-GEFIVLCGKDA  424 (447)
T ss_pred             hhh--hhhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcCCCce-EE-ecCCCCceeeeEEecCC-CcEEEEEcCCc
Confidence            865  3333345668999999999986 4444445669999876543 22 22333467999999988 77888888886


Q ss_pred             cEE
Q 021121          304 LVY  306 (317)
Q Consensus       304 ~i~  306 (317)
                      ...
T Consensus       425 fc~  427 (447)
T KOG4497|consen  425 FCV  427 (447)
T ss_pred             eEE
Confidence            443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.76  E-value=2.2e-14  Score=117.86  Aligned_cols=276  Identities=14%  Similarity=0.096  Sum_probs=166.1

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCe-eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCC
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGV-YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP   98 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~   98 (317)
                      .+.++++...      +|.|.+.|..+.+    .+..+.....+ ..+.|+||+ +++++.+.||.|.++|+.+.   +.
T Consensus         5 ~~l~~V~~~~------~~~v~viD~~t~~----~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~---~~   70 (369)
T PF02239_consen    5 GNLFYVVERG------SGSVAVIDGATNK----VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATG---KV   70 (369)
T ss_dssp             GGEEEEEEGG------GTEEEEEETTT-S----EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSS---SE
T ss_pred             ccEEEEEecC------CCEEEEEECCCCe----EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcc---cE
Confidence            3455555554      8999999988754    34444443344 457899998 57888889999999999876   56


Q ss_pred             ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-------ccceEEEEEecCCCCeEEEEeCC
Q 021121           99 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-------AYCVYNATWNPRHSDVFCSASGD  171 (317)
Q Consensus        99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d  171 (317)
                      +..+.. .....+++++++|+..+++...++.+.++|.++.+.++.+...       ..++..+..+|....++++.-+.
T Consensus        71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~  149 (369)
T PF02239_consen   71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT  149 (369)
T ss_dssp             EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred             EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence            666654 4456889999999944445557899999999999998887532       34677888888833344445556


Q ss_pred             CeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEE-ecCCcEEEEEccCCCcc---------------------
Q 021121          172 CTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASA-SVDKSIKIWDVRNYRVP---------------------  228 (317)
Q Consensus       172 g~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~---------------------  228 (317)
                      +.|.+.|....+.+. .............|+| ++++++++ ..+..|.++|.++.+..                     
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~  228 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG  228 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred             CeEEEEEeccccccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence            889898987765443 2222344567889999 88776554 45567778877654321                     


Q ss_pred             ---------------------------------EEEEecCCCceeEEEecCCCCeeEEee----ecCCeEEEEecccccc
Q 021121          229 ---------------------------------IAVLNGHGYAVRKVKFSPHRRNLLASC----SYDMTVCLWDFMVEDA  271 (317)
Q Consensus       229 ---------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~vwd~~~~~~  271 (317)
                                                       +..+.....+ .-+.-+|++++ +.+.    ...+.|.++|.++.+ 
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~-vwvd~~~~~~~~~v~viD~~tl~-  305 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRY-VWVDTFLNPDADTVQVIDKKTLK-  305 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SE-EEEE-TT-SSHT-EEEEECCGTE-
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCcc-EEeeccCCCCCceEEEEECcCcc-
Confidence                                             1111111222 34667899985 5544    556899999999886 


Q ss_pred             eeeeeec-ccceeEeEEEEeccCCeEEEeecCC-cEEEEecCCCC
Q 021121          272 LVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDE-LVYVWQQGMDP  314 (317)
Q Consensus       272 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg-~i~~w~~~~~~  314 (317)
                      ....+.. ....+..+.|++++....+|.-.++ .|.+||..+-+
T Consensus       306 ~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~  350 (369)
T PF02239_consen  306 VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK  350 (369)
T ss_dssp             EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred             eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence            3344432 2335899999999554555544444 89999987643

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.75  E-value=3.9e-16  Score=119.55  Aligned_cols=250  Identities=17%  Similarity=0.311  Sum_probs=176.3

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--------------cceeeeeecCCCCeeEEEecCCC
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--------------ALTELVAFDTADGVYDLAWSESH   72 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~   72 (317)
                      .+-+.++.|..  .|.+++++..      +|+|.+|.-.....              .+.-+......+.|..+.|.+++
T Consensus        25 adiis~vef~~--~Ge~LatGdk------gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~   96 (433)
T KOG1354|consen   25 ADIISAVEFDH--YGERLATGDK------GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG   96 (433)
T ss_pred             hcceeeEEeec--ccceEeecCC------CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence            45678899998  6777787775      89999998765432              11111222345679999999875


Q ss_pred             C-CeEEEEEcCCeEEEEEeCCCCCCC--------------------------------Ccee-eccCCcceEEEEEecCC
Q 021121           73 D-SLLIAAVADGSVKIYDTALPPTAN--------------------------------PIRS-LHEHTREVHSADYNPTR  118 (317)
Q Consensus        73 ~-~~l~~~~~dg~i~v~~~~~~~~~~--------------------------------~~~~-~~~~~~~v~~~~~~~~~  118 (317)
                      + ..++..+.|.+|++|.+......+                                +.+. -..|.--|+++.++.|+
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence            3 456777889999999987542111                                0011 13577789999999998


Q ss_pred             CCEEEEEcCCCEEEEEEcCCCceeEE---eec-----cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----e
Q 021121          119 RDSFITSSWDDTVKLWTVDRPTSVRT---FKE-----HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----M  186 (317)
Q Consensus       119 ~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~  186 (317)
                      . .++++. |=.|.+|+++-......   ++.     -..-|++..|+|...++++-.+..|+|++.|+|....-    .
T Consensus       177 E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  177 E-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             c-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            7 666655 78999999875432222   222     23458899999998999999999999999999953211    1


Q ss_pred             ee------------ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC---------------ce
Q 021121          187 II------------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY---------------AV  239 (317)
Q Consensus       187 ~~------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---------------~v  239 (317)
                      .+            ..--..|..+.|++ +|+++++-. --+|++||+.....++.+..-|..               .-
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~-sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK  332 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK  332 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence            11            11123578899999 999998754 368999999877777887776642               12


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ..++|+-++. .++||+..+.+++++...+
T Consensus       333 Fec~~sg~~~-~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  333 FECSWSGNDS-YVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eEEEEcCCcc-eEecccccceEEEecCCCC
Confidence            4678998888 6999999999999995443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=4.2e-15  Score=126.27  Aligned_cols=235  Identities=13%  Similarity=0.104  Sum_probs=153.1

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      ..|.++|.+...  .+.+.  .+...+...+|+|||+ .|+..+.   +..|.+||+..+   . ...+..+.+.+....
T Consensus       182 ~~l~~~d~dg~~--~~~lt--~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g---~-~~~l~~~~g~~~~~~  252 (435)
T PRK05137        182 KRLAIMDQDGAN--VRYLT--DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETG---Q-RELVGNFPGMTFAPR  252 (435)
T ss_pred             eEEEEECCCCCC--cEEEe--cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCC---c-EEEeecCCCcccCcE
Confidence            378888876543  22232  5677899999999985 5555543   468999998765   2 233445566778899


Q ss_pred             EecCCCCEEEEEcCCCE--EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCC--eEEEEeCCCCCceeee
Q 021121          114 YNPTRRDSFITSSWDDT--VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDC--TLRIWDVREMGSTMII  188 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~  188 (317)
                      |+|+|+.++++.+.++.  |.+||+++++. ..+..+........|+|+ ++.++..+ .+|  .|+++|+..++. ..+
T Consensus       253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l  329 (435)
T PRK05137        253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP-RRI  329 (435)
T ss_pred             ECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence            99999855566666654  77779887755 445555566778999999 66555554 333  688889876544 334


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC-----Ce
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD-----MT  260 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~  260 (317)
                      ......+....|+| +++.|+....+   ..|.+||+....  ...+. ....+....|+|+|+.++++....     ..
T Consensus       330 t~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        330 SFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSG--ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             ecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCc--eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence            33445566788999 88888776543   358888875543  23332 223467889999999655544433     25


Q ss_pred             EEEEecccccceeeeeecccceeEeEEEEe
Q 021121          261 VCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       261 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      +.++|+..+..  ..+. ..+.+...+|+|
T Consensus       406 L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        406 LYTVDLTGRNE--REVP-TPGDASDPAWSP  432 (435)
T ss_pred             EEEEECCCCce--EEcc-CCCCccCcccCC
Confidence            77778765542  2333 234466677776

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4e-16  Score=127.05  Aligned_cols=247  Identities=14%  Similarity=0.146  Sum_probs=176.9

Q ss_pred             eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccC-CcceEE-EEEecCCCCEEEEEcCCCE
Q 021121           53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEH-TREVHS-ADYNPTRRDSFITSSWDDT  130 (317)
Q Consensus        53 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~~l~~~~~dg~  130 (317)
                      .++.++++..-+.|..+|||..++++|...-.|++||+..-     ...+..| .+.+.. .-.+.|-. .++--..|.+
T Consensus        44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-----SLKFERhlDae~V~feiLsDD~S-K~v~L~~DR~  117 (703)
T KOG2321|consen   44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-----SLKFERHLDAEVVDFEILSDDYS-KSVFLQNDRT  117 (703)
T ss_pred             HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc-----eeeeeecccccceeEEEeccchh-hheEeecCce
Confidence            34456788889999999999999999999999999999753     2223323 233333 33344433 4555556777


Q ss_pred             EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121          131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       131 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      |.+...- |.. ..++ -...-..++++.-...++ .++....|+-+++++|.-+..+......++++..++ ...+|++
T Consensus       118 IefHak~-G~h-y~~R-IP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~  192 (703)
T KOG2321|consen  118 IEFHAKY-GRH-YRTR-IPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLAC  192 (703)
T ss_pred             eeehhhc-Cee-eeee-cCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecC-ccceEEe
Confidence            7664322 211 1111 122345566665535555 445556799999999999998888888999999999 8889999


Q ss_pred             EecCCcEEEEEccCCCccEEEEe------cCCC-----ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          211 ASVDKSIKIWDVRNYRVPIAVLN------GHGY-----AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      |+.+|.+..||.+.... +..+.      .|.+     .|+++.|+.+|- -+++|..+|.+.|||+++.++++..-.+.
T Consensus       193 Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~  270 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGY  270 (703)
T ss_pred             cccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCC
Confidence            99999999999998553 33332      2332     499999998887 49999999999999999998777666666


Q ss_pred             cceeEeEEEEeccCC-eEEEeecCCcEEEEecCCC
Q 021121          280 TEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       280 ~~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+|..+.|.+.++. .++|. ....++|||-.++
T Consensus       271 e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  271 ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             ccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence            779999999776333 45554 5678999997664

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=2.5e-16  Score=131.88  Aligned_cols=298  Identities=17%  Similarity=0.255  Sum_probs=214.4

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC-CeEEEEEcC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD-SLLIAAVAD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d   82 (317)
                      ++....+.++..+|.+.+..+++..         -+++.|+.....+..-+.. -.+-.|-...|+|... .+-++....
T Consensus        21 l~v~~~~~a~si~p~grdi~lAsr~---------gl~i~dld~p~~ppr~l~h-~tpw~vad~qws~h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRDIVLASRQ---------GLYIIDLDDPFTPPRWLHH-ITPWQVADVQWSPHPAKPYWIVSTSN   90 (1081)
T ss_pred             EEecCcccceeeccccchhhhhhhc---------CeEEEeccCCCCCceeeec-cCcchhcceecccCCCCceeEEecCc
Confidence            4456677788899964444443322         5778888765433333321 2233577888987532 244444455


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeeccccceEEEEEecCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ..-.+|++...........+.+|...|+.+.|+|..+..+++++-|..+..||+++.. .+..+..-...-..+.|+..+
T Consensus        91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            5677999987655556667789999999999999999899999999999999998864 334444444557889999886


Q ss_pred             CCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121          162 SDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR  240 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~  240 (317)
                      ++.+ +.+....|++||++.+ .++..+++|...++.++|.......+.+++.|++++.||..+...........+.+|.
T Consensus       171 p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw  249 (1081)
T KOG0309|consen  171 PNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW  249 (1081)
T ss_pred             cchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcce
Confidence            6666 4566778999999987 5677888899999999998867778999999999999999876544444445667888


Q ss_pred             EEEecCCCCeeEEeeecC-CeEEE---------EecccccceeeeeecccceeEeEEEEecc---------CCeEEEeec
Q 021121          241 KVKFSPHRRNLLASCSYD-MTVCL---------WDFMVEDALVGRYDHHTEFAVGVDMSVLV---------EGLLASTGW  301 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d-~~i~v---------wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~l~s~~~  301 (317)
                      .-++.|-|+.+++.-... ..+.+         |+..+....+..+.+|...|....|-..+         +-.|+|-+.
T Consensus       250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence            888888776544332221 23333         44444556788999999988877775431         127999999


Q ss_pred             CCcEEEEecCC
Q 021121          302 DELVYVWQQGM  312 (317)
Q Consensus       302 dg~i~~w~~~~  312 (317)
                      |..+++|.++.
T Consensus       330 D~~lrlWpI~~  340 (1081)
T KOG0309|consen  330 DQTLRLWPIDS  340 (1081)
T ss_pred             CCceEeeeccH
Confidence            99999999865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.4e-14  Score=120.98  Aligned_cols=216  Identities=8%  Similarity=0.033  Sum_probs=138.2

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc---CCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS---WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .|.++|.+..    ....+..+...+...+|+|+|+ .|+..+   .+..|.+|++.+++... +....+......|+|+
T Consensus       180 ~l~~~d~dg~----~~~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCC----CCEEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCC
Confidence            6888887643    2233445667899999999998 555432   34579999998875433 2223344567899999


Q ss_pred             CCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-Cc--EEEEEccCCCccEEEEecC
Q 021121          161 HSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KS--IKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       161 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~  235 (317)
                      +..++++.+.+|  .|++||+++++... +..+...+....|+| +++.|+..+.+ +.  |+++|+.++.  ...+..+
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~  329 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWE  329 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC--eEEeecC
Confidence            444444445555  58999998776543 333445678899999 88877766653 44  4445665543  3344444


Q ss_pred             CCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc---EEEEec
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL---VYVWQQ  310 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~---i~~w~~  310 (317)
                      ........|+|+|+.+++++..+  ..|.+||+.+++..  .+... .......|+|+ +..|+.++.++.   +.++++
T Consensus       330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpD-G~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPN-GTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCC-CCEEEEEEcCCCceEEEEEEC
Confidence            44566789999999544444333  35888998877522  22221 22346789999 777777776653   677777


Q ss_pred             CCC
Q 021121          311 GMD  313 (317)
Q Consensus       311 ~~~  313 (317)
                      +..
T Consensus       406 ~G~  408 (429)
T PRK03629        406 DGR  408 (429)
T ss_pred             CCC
Confidence            543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.9e-14  Score=121.19  Aligned_cols=216  Identities=11%  Similarity=0.047  Sum_probs=142.1

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc---CCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS---WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .|.++|.+.    .....+..|...+.+..|+|+|+ .|+..+   .+..|.+||+.+++.. .+..+.+.+...+|+|+
T Consensus       183 ~l~~~d~dg----~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDG----ANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCC----CCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence            677777643    34445667788999999999998 565544   3468999999887653 44445667788999999


Q ss_pred             CCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121          161 HSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       161 ~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +..++++.+.++.  |++||+.+++. ..+..+........|+| +++.++..+. ++  .|+++|+....  ...+..+
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~  332 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN--PRRISFG  332 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC--eEEeecC
Confidence            4445556666655  77789887654 44554555567789999 8887776663 33  58888876644  3344434


Q ss_pred             CCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE-eecC-----CcEEE
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS-TGWD-----ELVYV  307 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d-----g~i~~  307 (317)
                      ...+....|+|+|+.++++....  ..|.+||+..+..  ..+.. ...+....|+|+ ++.|+. ....     ..|++
T Consensus       333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~  408 (435)
T PRK05137        333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYT  408 (435)
T ss_pred             CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECCC-CCEEEEEEccCCCCCcceEEE
Confidence            45567789999999544433222  3588888765442  22221 234678899999 565544 4333     25777


Q ss_pred             EecCCC
Q 021121          308 WQQGMD  313 (317)
Q Consensus       308 w~~~~~  313 (317)
                      .+++..
T Consensus       409 ~dl~g~  414 (435)
T PRK05137        409 VDLTGR  414 (435)
T ss_pred             EECCCC
Confidence            777553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=5.1e-15  Score=110.78  Aligned_cols=152  Identities=22%  Similarity=0.428  Sum_probs=110.1

Q ss_pred             eEEEecCCCCCeEEEEEc---------CCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEE-EEEcCCCEEE
Q 021121           64 YDLAWSESHDSLLIAAVA---------DGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSF-ITSSWDDTVK  132 (317)
Q Consensus        64 ~~~~~~~~~~~~l~~~~~---------dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l-~~~~~dg~v~  132 (317)
                      ..+.|+|+|+.+++....         -|...+|.++..+  .+...+.- ..++|.+++|+|++..++ +.|..++.|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            457899999755555541         2457777775432  23333332 345799999999998432 2345678999


Q ss_pred             EEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEE
Q 021121          133 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIA  209 (317)
Q Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  209 (317)
                      +||++ ++.+..+.  ...++.+.|+|+ ++++++++.   .|.|.+||.++.+.+.... | ..+..++|+| +|++++
T Consensus        87 lyd~~-~~~i~~~~--~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsP-dGr~~~  159 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG--TQPRNTISWSPD-GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSP-DGRYLA  159 (194)
T ss_pred             EEcCc-ccEeEeec--CCCceEEEECCC-CCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcC-CCCEEE
Confidence            99997 66666654  567889999999 888888764   4679999999877776654 3 3478999999 999999


Q ss_pred             EEec------CCcEEEEEccC
Q 021121          210 SASV------DKSIKIWDVRN  224 (317)
Q Consensus       210 ~~~~------d~~i~v~d~~~  224 (317)
                      ++..      |..++||+...
T Consensus       160 ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEeccceeccccEEEEEecC
Confidence            9874      67889999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.69  E-value=1.6e-14  Score=110.86  Aligned_cols=244  Identities=14%  Similarity=0.213  Sum_probs=172.6

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      +.+++...-|.+++.+-++  .      |.+++||--.+.......+ ....+.+++++.+.++. ..|++|-..|++.-
T Consensus        25 d~vn~~~l~~~e~gv~~~s--~------drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   25 DDVNAAILIPKEEGVISVS--E------DRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSES-RRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhheeccCCCCeEEcc--c------cceeeeEEeccccccCchh-hhhCCCCceEeeeeccc-eEEEEEEecceEEE
Confidence            4455555555434433332  2      7799999765544322222 22456789999999987 69999999999999


Q ss_pred             EEeCCC-CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121           88 YDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        88 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      +.+... +.....+....|...+..+-|+.... .+++.+.|..+.---.+.+..+..+. .....+++.+.-   .+..
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~f  169 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAF  169 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceE-eeccCCCCceee---EEEE
Confidence            987643 12244556678999999999987766 88999988877655555554443332 111112222211   1344


Q ss_pred             EEeCCCeEEEEeC--CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          167 SASGDCTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       167 ~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      .|...|.|....+  ....++..+.+|...+.++.|.| ...++.+|..|..+.+||+...+.....+.+|...|..+..
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence            5555666655444  34467778899999999999999 89999999999999999998877667778899999999998


Q ss_pred             cCCCCeeEEeeecCCeEEEEeccc
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .+--+ .+++++.||.|.+||+..
T Consensus       249 ~~~t~-~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  249 AQHTR-QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhe-eeeeccCCCeEEEEeccc
Confidence            88777 588999999999999863

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4.7e-16  Score=124.18  Aligned_cols=256  Identities=16%  Similarity=0.226  Sum_probs=191.0

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|..-.|-|..+.+-+++.+.      ||.+++=.+...+..........|.++|..++.-|+.++-|.+++.|+.+
T Consensus       184 H~~NvfQaKFiP~s~d~ti~~~s~------dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v  257 (559)
T KOG1334|consen  184 HCNNVFQAKFIPFSGDRTIVTSSR------DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV  257 (559)
T ss_pred             cccchhhhhccCCCCCcCceeccc------cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccce
Confidence            556677778999877888888776      99999998877664343455558999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCc---ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce------eEEee------cccc
Q 021121           86 KIYDTALPPTANPIRSLHEHTR---EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS------VRTFK------EHAY  150 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~------~~~~  150 (317)
                      .-+|+..............+..   ...+++..|...+.+++++.|-.+++||.+.-..      +.++.      ...-
T Consensus       258 ~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v  337 (559)
T KOG1334|consen  258 FHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV  337 (559)
T ss_pred             eeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence            9999987633333333333333   5678899999888999999999999999764321      12221      2234


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC------------cee-eeccCccc--eEEEEecCCCCcEEEEEecCC
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMG------------STM-IIPAHEFE--ILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~-~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      .|++++|+.+++.++ ++..|-.|+++.-..+.            .+. .+++|...  |..+-|--....++++|+.-|
T Consensus       338 ~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCG  416 (559)
T KOG1334|consen  338 NITGLVYSHDGSELL-ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCG  416 (559)
T ss_pred             cceeEEecCCcccee-eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccc
Confidence            699999998855555 56667788998543221            112 25666543  666665432789999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .|.+|+-.+.+. +..+.+....|+||.-+|.-+ +||+.+-|..|+||-..+.+
T Consensus       417 hIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  417 HIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             eEEEEecchhHH-HHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCccc
Confidence            999999888664 666777666999999999998 89999999999999875443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3.5e-14  Score=120.55  Aligned_cols=216  Identities=9%  Similarity=0.031  Sum_probs=138.9

Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC---CCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW---DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (317)
                      ..|.+||...    .....+..+...+.+..|+|+++ .|+..+.   +..|.+||+.+++... +....+...+..|+|
T Consensus       184 ~~l~i~D~~g----~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDG----YNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCC----CCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC
Confidence            3588888753    23344556677899999999998 6665553   3479999998876543 333444556789999


Q ss_pred             CCCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCc--EEEEEccCCCccEEEEec
Q 021121          160 RHSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKS--IKIWDVRNYRVPIAVLNG  234 (317)
Q Consensus       160 ~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~  234 (317)
                      ++..++++.+.+|  .|++||+.+++. ..+..+.......+|+| +++.|+..+. ++.  |+++|+.+++  ...+..
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~  333 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS--AERLTF  333 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--eEEeec
Confidence            9444555666665  599999987764 34444544556789999 8887776653 444  6666766544  233333


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCC--eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec-C--CcEEEEe
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW-D--ELVYVWQ  309 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~~w~  309 (317)
                      +.......+|+|+|+.++++...++  .|.+||+.+++..  .+. +........|+|+ +++|+..+. .  +.|.+++
T Consensus       334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spd-G~~i~~~s~~~g~~~L~~~~  409 (433)
T PRK04922        334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPN-GSMVLYATREGGRGVLAAVS  409 (433)
T ss_pred             CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCC-CCEEEEEEecCCceEEEEEE
Confidence            3334557899999995444333332  6999999876532  222 2223556799999 665554443 2  3567777


Q ss_pred             cCC
Q 021121          310 QGM  312 (317)
Q Consensus       310 ~~~  312 (317)
                      ++.
T Consensus       410 ~~g  412 (433)
T PRK04922        410 TDG  412 (433)
T ss_pred             CCC
Confidence            654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1e-13  Score=117.95  Aligned_cols=236  Identities=8%  Similarity=0.025  Sum_probs=143.7

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-C--CeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-D--GSVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      .|.++|.+...  .+.+  ..+...+...+|+|+|+ .|+..+. +  ..|.+|++..++   . ..+....+.+....|
T Consensus       180 ~l~~~d~~g~~--~~~l--~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~---~-~~l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGAR--AVTL--LQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGR---R-EQITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCCC--ceEE--ecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCC---E-EEccCCCCCcCCeEE
Confidence            57777776543  2222  25567789999999995 5555443 3  368888987652   1 222223344556899


Q ss_pred             ecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeecc
Q 021121          115 NPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~  190 (317)
                      +|+|+.++++.+.+|  .|.++|+.+++.. .+..+........|+|++..++++...+|  .|+++|+.+++... +..
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~  328 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF  328 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec
Confidence            999984445665555  6888899887643 34445555677899999444444444444  57777887765433 221


Q ss_pred             CccceEEEEecCCCCcEEEEEecC-C--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe--EEEEe
Q 021121          191 HEFEILACDWNKYDDCLIASASVD-K--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT--VCLWD  265 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~vwd  265 (317)
                      .........|+| +++.++....+ +  .|.++|+.+++.  ..+.. ........|+|+|+.++++...++.  +.+.+
T Consensus       329 ~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~  404 (430)
T PRK00178        329 VGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVS  404 (430)
T ss_pred             CCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            222334578999 88888776643 3  488889887653  33322 2223356899999965555554443  55666


Q ss_pred             cccccceeeeeecccceeEeEEEEe
Q 021121          266 FMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      +...  ....+..+.+.+...+|+|
T Consensus       405 ~~g~--~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        405 INGR--VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCCC--ceEECcCCCCCcCCCccCC
Confidence            6433  2234444455677778876

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=6.1e-14  Score=118.68  Aligned_cols=208  Identities=12%  Similarity=0.039  Sum_probs=127.7

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC---CCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW---DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .|.++|.+.    .....+..+...+.+.+|+|+|+ .|+..+.   ...|.+||+.+++... +....+.....+|+|+
T Consensus       177 ~L~~~D~dG----~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD  250 (427)
T PRK02889        177 QLQISDADG----QNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD  250 (427)
T ss_pred             EEEEECCCC----CCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence            455555432    33334456778899999999998 5655443   2469999999886543 3334455678999999


Q ss_pred             CCCeEEEEeCCCeEEEEe--CCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCCCccEEEEecCCC
Q 021121          161 HSDVFCSASGDCTLRIWD--VREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      +..++++.+.+|...+|.  +..+. ...+..+........|+| +++.++..+. ++...+|.+.........+.....
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~  328 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS  328 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence            444445677787766655  44433 444544554556788999 8887776553 456666655422111222222233


Q ss_pred             ceeEEEecCCCCeeEEeeecCC---eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee-cCCc
Q 021121          238 AVRKVKFSPHRRNLLASCSYDM---TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDEL  304 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~  304 (317)
                      ......|+|+|+. |+..+.++   .|.+||+.+++..  .+... .......|+|+ ++.|+..+ ..|.
T Consensus       329 ~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spd-g~~l~~~~~~~g~  394 (427)
T PRK02889        329 YNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPN-GRYILYATQQGGR  394 (427)
T ss_pred             CcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCC-CCEEEEEEecCCC
Confidence            3456889999995 55544443   6999999877522  22222 23467899999 55554444 4444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.68  E-value=2.5e-12  Score=105.82  Aligned_cols=256  Identities=17%  Similarity=0.203  Sum_probs=161.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEE-cCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAV-ADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-~dg   83 (317)
                      .......++++|  ++.++.+..+..  ...|.|..|++......+..+.... .......++++|++. +|+++. .+|
T Consensus        35 ~~~~Ps~l~~~~--~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g  109 (345)
T PF10282_consen   35 EGENPSWLAVSP--DGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGG  109 (345)
T ss_dssp             ESSSECCEEE-T--TSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTT
T ss_pred             CCCCCceEEEEe--CCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCC
Confidence            345566788999  556666655411  1268999999988744455555544 455667899999985 555554 589


Q ss_pred             eEEEEEeCCCCCCCCce-ee----------ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--eeE--Eee-c
Q 021121           84 SVKIYDTALPPTANPIR-SL----------HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--SVR--TFK-E  147 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~-~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~--~~~-~  147 (317)
                      .|.++++.......... ..          ........++.++|+++.++++.-....|.+|+++...  ...  .+. .
T Consensus       110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~  189 (345)
T PF10282_consen  110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP  189 (345)
T ss_dssp             EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred             eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence            99999998642221111 11          11235578899999998444445556689999998765  211  222 2


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCC--CCC--ceeeecc------CccceEEEEecCCCCcEEEEEe-cCCc
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR--EMG--STMIIPA------HEFEILACDWNKYDDCLIASAS-VDKS  216 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~--~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~-~d~~  216 (317)
                      .......+.|+|++..+.++.-.++.|.++++.  +++  .+..+..      .......++++| ++++|.++. ..+.
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~s  268 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNS  268 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTE
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCE
Confidence            345689999999944445556668889999988  332  1222211      112567899999 888776655 5678


Q ss_pred             EEEEEccCC--Cc-cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          217 IKIWDVRNY--RV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       217 i~v~d~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      |.+|++...  +. .+..........+.++++|+|+.++++...++.|.+|++.
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            999999432  21 1223333345579999999999655555678899999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.67  E-value=2.5e-14  Score=109.80  Aligned_cols=249  Identities=19%  Similarity=0.296  Sum_probs=173.8

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC--CCCceeeccCC------------cceEEEEEecCCC-CEEE
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHT------------REVHSADYNPTRR-DSFI  123 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~~------------~~v~~~~~~~~~~-~~l~  123 (317)
                      ...-|.++.|...| .+|++|..+|.|.++.-.....  ......++.|.            ..|..+.|.++++ ..++
T Consensus        24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            44568999999999 5999999999999997554321  11222333333            4688999987653 3677


Q ss_pred             EEcCCCEEEEEEcCCCceeE-----------------------------------Ee-eccccceEEEEEecCCCCeEEE
Q 021121          124 TSSWDDTVKLWTVDRPTSVR-----------------------------------TF-KEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus       124 ~~~~dg~v~iwd~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                      ..+.|.+|++|.+.......                                   .+ .+|..-|+++.++.+ ...+++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-~Et~lS  181 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-KETFLS  181 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-cceEee
Confidence            77889999999875421100                                   01 257778999999988 666655


Q ss_pred             EeCCCeEEEEeCCCCCcee---eeccC-----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE--------
Q 021121          168 ASGDCTLRIWDVREMGSTM---IIPAH-----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV--------  231 (317)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~---~~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------  231 (317)
                      + .|=.|.+|+++-.....   .++++     ..-|++..|+|...++++..+..|+|++.|+|....+...        
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            4 57789999987543322   22222     2348899999988899999999999999999954321111        


Q ss_pred             -------EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc------------ee---EeEEEE
Q 021121          232 -------LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE------------FA---VGVDMS  289 (317)
Q Consensus       232 -------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------~v---~~~~~~  289 (317)
                             +..--..|..+.|+++|+ ++++-+ --+|++||+.....++..+.-|..            .|   ..++|+
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGr-yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGR-YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCc-EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence                   111124688999999999 576543 368999999665555566655531            22   457888


Q ss_pred             eccCCeEEEeecCCcEEEEecCCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+ +.+++||+....++++++..+
T Consensus       339 g~-~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  339 GN-DSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CC-cceEecccccceEEEecCCCC
Confidence            77 779999999999999996544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.66  E-value=1.2e-14  Score=126.12  Aligned_cols=193  Identities=17%  Similarity=0.216  Sum_probs=154.0

Q ss_pred             EEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccc----eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee
Q 021121          112 ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC----VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI  187 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  187 (317)
                      ..+.-+.. .++.++.+..+.+||...+....+.......    ..-+.++++ .-++++|+.-+.|.+|+....+....
T Consensus        93 ~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~p~~  170 (967)
T KOG0974|consen   93 AKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNKPIR  170 (967)
T ss_pred             cchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCCcce
Confidence            34444445 6778888899999999988776666543321    122334555 66888999999999999985555556


Q ss_pred             eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      +.+|++.+.++.++. ++.++++.++|.++|+|++.+.+......-+|...|..++|.|+   .+++++.|-+.++|+..
T Consensus       171 l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc
Confidence            889999999999998 99999999999999999999988755567789999999999998   49999999999999765


Q ss_pred             cccceeeeeeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          268 VEDALVGRYDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       268 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+  +..+..|. ..|..++..+. ...++|++.|+.+++|++...
T Consensus       247 ~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  247 GTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhhhhcc
Confidence            433  34666664 46888888886 779999999999999998753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.66  E-value=7.5e-14  Score=114.34  Aligned_cols=192  Identities=17%  Similarity=0.222  Sum_probs=156.0

Q ss_pred             CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe------c-------------CCCCEEEEEcCCCEEE
Q 021121           72 HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN------P-------------TRRDSFITSSWDDTVK  132 (317)
Q Consensus        72 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~v~  132 (317)
                      +..++|....||.+++|+...+...........-.+..++..|.      |             .+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            34689999999999999998763222222222234455555553      1             1223688888999999


Q ss_pred             EEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121          133 LWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       133 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      +|++..++....+.  .|.++|.++.++.+ -..|.+++.|+.+..|+.......+........+.+++.+| ++..+++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~  161 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLT  161 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEe
Confidence            99999998887775  68899999999987 88999999999999999999999999998888899999999 8999998


Q ss_pred             EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCC-----CCeeEEeeecCCeEEEEeccc
Q 021121          211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH-----RRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      ++  +.|++||+++.+ .+..+.+|.++|+++.|--.     |.++|.+...+..+.+|-+..
T Consensus       162 as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            86  689999999966 48999999999999999877     777777777778888887765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.66  E-value=1.5e-13  Score=116.88  Aligned_cols=235  Identities=14%  Similarity=0.105  Sum_probs=145.0

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSA  112 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~  112 (317)
                      ...|.++|.+...  .+.+  ..+...+...+|+|++. .|+....+   ..|.+|++..+   . ...+..+.+.+.++
T Consensus       169 ~~~l~~~d~~g~~--~~~l--~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g---~-~~~~~~~~~~~~~~  239 (417)
T TIGR02800       169 RYELQVADYDGAN--PQTI--TRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATG---Q-REKVASFPGMNGAP  239 (417)
T ss_pred             cceEEEEcCCCCC--CEEe--ecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCC---C-EEEeecCCCCccce
Confidence            3467888775443  2222  24556788999999995 66655543   47999998764   2 22233455667778


Q ss_pred             EEecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCC--eEEEEeCCCCCceee
Q 021121          113 DYNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDC--TLRIWDVREMGSTMI  187 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~  187 (317)
                      +|+|+++.++++.+.++  .|++||+.+++.. .+..+........|+|+ ++.++..+ .++  .|+++|+.+++. ..
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~~~~~~-~~  316 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDADGGEV-RR  316 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence            99999984555555554  5888998876543 34344444557789998 66555444 333  588888876654 33


Q ss_pred             eccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC--eEE
Q 021121          188 IPAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM--TVC  262 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~  262 (317)
                      +..+........|+| ++++++.+..++   .|.+||+.+..  ...+... .......|+|+++.++++...++  .+.
T Consensus       317 l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~--~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       317 LTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGG--ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG  392 (417)
T ss_pred             eecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCC--eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence            433455667889999 888888887765   78899987743  3333322 23456789999996444444443  344


Q ss_pred             EEecccccceeeeeecccceeEeEEE
Q 021121          263 LWDFMVEDALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       263 vwd~~~~~~~~~~~~~~~~~v~~~~~  288 (317)
                      +.+....  ....+..+.+.+..++|
T Consensus       393 ~~~~~g~--~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       393 LVSTDGR--FRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEECCCc--eeeECCCCCCCcCCCCC
Confidence            5453322  22333333444444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=5.1e-13  Score=109.85  Aligned_cols=189  Identities=15%  Similarity=0.146  Sum_probs=130.6

Q ss_pred             eE-EEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           75 LL-IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        75 ~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      ++ ++-..++.|.+.|..+.   +.+..+......-..+.|+||++ ++++++.||.|.++|+.+.+.+.+++... ...
T Consensus         7 l~~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~   81 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGG-NPR   81 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred             EEEEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCC-Ccc
Confidence            44 45556899999998765   66677765444445578999998 78888899999999999999999988544 478


Q ss_pred             EEEEecCCCCeEEE-EeCCCeEEEEeCCCCCceeeeccC-------ccceEEEEecCCCCc-EEEEEecCCcEEEEEccC
Q 021121          154 NATWNPRHSDVFCS-ASGDCTLRIWDVREMGSTMIIPAH-------EFEILACDWNKYDDC-LIASASVDKSIKIWDVRN  224 (317)
Q Consensus       154 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~-~l~~~~~d~~i~v~d~~~  224 (317)
                      +++++++ ++++++ ....+.+.++|.++.+++..+...       ...+..+..+| ... ++++.-+.+.|.+.|...
T Consensus        82 ~i~~s~D-G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   82 GIAVSPD-GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEE--T-TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEcCC-CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecc
Confidence            8999999 665554 557899999999999988877543       33567788888 555 555555558898889887


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .+.................|+|++++++++...++.|.++|..+.+
T Consensus       160 ~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  160 PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             ccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence            6543333433455677899999999767766777889999987764

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.66  E-value=3.9e-14  Score=106.47  Aligned_cols=230  Identities=17%  Similarity=0.191  Sum_probs=158.2

Q ss_pred             CceEEEEecCCCCCc--ceeeeeecCCC-CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121           36 NGRVHVLDLSPAAPA--LTELVAFDTAD-GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSA  112 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~  112 (317)
                      +|.|.+|........  +..+....... .-.++.|++.+ ..++++..+|.+.+-+.... ..+.....+.|.-+++..
T Consensus        94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta  171 (339)
T KOG0280|consen   94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTA  171 (339)
T ss_pred             cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEeccee-eeeecccccccceeeeee
Confidence            789999987654321  11121111111 24577888887 57888888999985554332 334455788999999999


Q ss_pred             EEecCCCCEEEEEcCCCEEEEEEcCC-CceeEE-eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-Cceeeec
Q 021121          113 DYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRT-FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIP  189 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~  189 (317)
                      .|+...++++++|+.|+.+..||++. ++.+.. .+.|...|.+|.-+|..+.++++|+.|-.|++||.|+. +++.. .
T Consensus       172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~  250 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-A  250 (339)
T ss_pred             ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-C
Confidence            99988888999999999999999983 333333 45688889999999988999999999999999999965 44443 3


Q ss_pred             cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc----EEEEecCCCceeEEEecCCCCeeEEeee-cCCeEE-E
Q 021121          190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP----IAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVC-L  263 (317)
Q Consensus       190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~-v  263 (317)
                      ...+.|..+.++|.....++.+..-.-.+|-+.......    ......|.+-+..-.|..... +|++++ .|+.++ +
T Consensus       251 ~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~  329 (339)
T KOG0280|consen  251 KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQL  329 (339)
T ss_pred             ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccc-eeeeeeccccceeee
Confidence            355889999999955444444444445777777654322    233456666666666754433 688765 556544 6


Q ss_pred             Eecccc
Q 021121          264 WDFMVE  269 (317)
Q Consensus       264 wd~~~~  269 (317)
                      |-.-++
T Consensus       330 Wl~~t~  335 (339)
T KOG0280|consen  330 WLHITG  335 (339)
T ss_pred             eeeccC
Confidence            654443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3.4e-14  Score=106.36  Aligned_cols=151  Identities=17%  Similarity=0.291  Sum_probs=101.6

Q ss_pred             EEEEEecCCCCeEEEEeC---------CCeEEEEeCCCC-Cceeeecc-CccceEEEEecCCCCcEEEEE--ecCCcEEE
Q 021121          153 YNATWNPRHSDVFCSASG---------DCTLRIWDVREM-GSTMIIPA-HEFEILACDWNKYDDCLIASA--SVDKSIKI  219 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~-~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v  219 (317)
                      ..+.|+|++..+++....         -|...+|.++.. .+...+.. ...+|.+++|+| +++.+++.  ..+..|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            457788884444444431         233555555332 33333332 345799999999 77776544  45679999


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec---CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY---DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      ||++. + ++..+.  ...+..+.|+|+|+ +|++++.   .|.|.+||+++.+ .+.... | ..++.++|+|+ +++|
T Consensus        88 yd~~~-~-~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~-~-~~~t~~~WsPd-Gr~~  158 (194)
T PF08662_consen   88 YDVKG-K-KIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKK-KISTFE-H-SDATDVEWSPD-GRYL  158 (194)
T ss_pred             EcCcc-c-EeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCE-Eeeccc-c-CcEEEEEEcCC-CCEE
Confidence            99972 3 344443  45778999999999 5666653   4679999999765 334433 3 34789999999 7888


Q ss_pred             EEeec------CCcEEEEecCCC
Q 021121          297 ASTGW------DELVYVWQQGMD  313 (317)
Q Consensus       297 ~s~~~------dg~i~~w~~~~~  313 (317)
                      +++..      |+.++||++...
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEeccceeccccEEEEEecCe
Confidence            87763      788999998754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.9e-13  Score=114.97  Aligned_cols=237  Identities=11%  Similarity=0.110  Sum_probs=141.8

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC--eEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG--SVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      .|.++|.+..+  .+.+  ......+....|+|||..++.+...++  .|.+||+..++ ...+..+   .+......|+
T Consensus       199 ~l~i~d~dG~~--~~~l--~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~---~g~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYN--EQML--LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF---PGINGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCC--ceEe--ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC---CCCcCCeeEC
Confidence            67777766544  2222  245667889999999964444443344  57777876541 1122222   2334468999


Q ss_pred             cCCCCEEEEEcCCCE--EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeeccC
Q 021121          116 PTRRDSFITSSWDDT--VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPAH  191 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~  191 (317)
                      |+|+.++++.+.+|.  |.++|+++++. ..+..+........|+|++..++++...++  .|+++|+.+++... +...
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~  348 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE  348 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence            999855556666664  77888887654 344445555678899999444444444444  46677877665433 2212


Q ss_pred             ccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe--EEEEec
Q 021121          192 EFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT--VCLWDF  266 (317)
Q Consensus       192 ~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~vwd~  266 (317)
                      .......+|+| +++.++..+. ++  .|.++|+.+++  ...+.... ......|+|+++.++++...++.  +.+++.
T Consensus       349 g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        349 GEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGA--MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             CCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCC--eEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            22234578999 8877776654 34  45667777654  23333221 22345899999976666655554  666665


Q ss_pred             ccccceeeeeecccceeEeEEEEe
Q 021121          267 MVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      . ++ ....+..+.+.+...+|+|
T Consensus       425 ~-G~-~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        425 D-GR-FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             C-CC-ceEECcCCCCCcCCCccCC
Confidence            3 32 3445555556677888887

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=5.8e-13  Score=112.27  Aligned_cols=241  Identities=13%  Similarity=0.133  Sum_probs=141.9

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCC--eEEEEEcCC--eEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDS--LLIAAVADG--SVKIYDTALPPTANPIRSLHEHTREVHSA  112 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~~~~~v~~~  112 (317)
                      +.|.+.|.+..+  ...+.  ........-+|+|||..  ++++...+|  .|.+.++..+ ....+   ....+.....
T Consensus       165 ~~l~~~d~dG~~--~~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~l---t~~~g~~~~p  236 (428)
T PRK01029        165 GELWSVDYDGQN--LRPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKKI---LALQGNQLMP  236 (428)
T ss_pred             ceEEEEcCCCCC--ceEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceEe---ecCCCCccce
Confidence            467777766554  23332  23445667799999864  333554454  4666666644 22222   2234445568


Q ss_pred             EEecCCCCEEEEEcCCC----EEEEEEcCCC---ceeEEeeccccceEEEEEecCCCCeEE-EEeCCCeEEEE--eCCC-
Q 021121          113 DYNPTRRDSFITSSWDD----TVKLWTVDRP---TSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCTLRIW--DVRE-  181 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg----~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~--d~~~-  181 (317)
                      .|+|||+.++++...+|    .+..|++..+   +...............+|+|+ ++.|+ +...+|...+|  ++.. 
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD-G~~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD-GTRLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC-CCEEEEEECCCCCceEEEEECccc
Confidence            99999984555543333    3445776653   222222222234467899999 55444 44456654555  4432 


Q ss_pred             CCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec-
Q 021121          182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY-  257 (317)
Q Consensus       182 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  257 (317)
                      +.....+......+....|+| +++.|+..+.+   ..|.+||+.+++.  ..+......+....|+|+++.+++++.. 
T Consensus       316 g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        316 GQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             ccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECCCCCEEEEEECCC
Confidence            233444444445667889999 88888766543   3699999987653  3343333456789999999965555543 


Q ss_pred             -CCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          258 -DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       258 -d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                       ...|.++|+..++.  ..+....+.+...+|+|-
T Consensus       393 g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        393 NESELYLISLITKKT--RKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CCceEEEEECCCCCE--EEeecCCCcccCceecCC
Confidence             34688888877652  223333445667788874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.62  E-value=1.8e-13  Score=112.21  Aligned_cols=189  Identities=15%  Similarity=0.172  Sum_probs=153.1

Q ss_pred             CCCEEEEEcCCCEEEEEEcCCCceeEEeec---cccceEEEEEe------c-------------CCCCeEEEEeCCCeEE
Q 021121          118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKE---HAYCVYNATWN------P-------------RHSDVFCSASGDCTLR  175 (317)
Q Consensus       118 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i~  175 (317)
                      +..+++....||.+++||...++....+..   -.+..++..|.      |             .+..+++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            334899999999999999999887776642   12334444442      2             1356788899999999


Q ss_pred             EEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEE
Q 021121          176 IWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       176 i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  253 (317)
                      +|+...++....+.  .|.+.|.++.++. +-..|.+++.|+.+..|+..... ........+..+.+++.+||+. +++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~-~l~  160 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGK-ILL  160 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCC-EEE
Confidence            99999988777665  6888999999998 88899999999999999998855 4677777888899999999998 687


Q ss_pred             eeecCCeEEEEecccccceeeeeecccceeEeEEEEec-----cCCeEEEeecCCcEEEEecCC
Q 021121          254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-----VEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       254 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +++  +.|++||+++.+ ++..+.+|.++|.+++|...     +..+|.+...+..+.+|-+..
T Consensus       161 ~as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            775  679999999987 78899999999999999876     344666666788889998876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=2.2e-12  Score=105.31  Aligned_cols=275  Identities=13%  Similarity=0.209  Sum_probs=168.5

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE-----Ec
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA-----VA   81 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~   81 (317)
                      ..++...++|+  ++++.+...       +..+.|++.....    .+.+.... .++++.|+|-+ .+|.+=     ..
T Consensus        34 ~~~~~v~~~S~--~G~lfA~~~-------~~~v~i~~~~~~~----~~lt~~~~-~~~~L~fSP~g-~yL~T~e~~~i~~   98 (566)
T KOG2315|consen   34 SRPCNVFAYSN--NGRLFAYSD-------NQVVKVFEIATLK----VVLCVELK-KTYDLLFSPKG-NYLLTWEPWAIYG   98 (566)
T ss_pred             CCcceeEEEcC--CCcEEEEEc-------CCeEEEEEccCCc----EEEEeccc-eeeeeeecccc-ccccccccccccc
Confidence            34456788888  677777665       6699999988765    22222333 79999999988 466541     11


Q ss_pred             -----CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEE
Q 021121           82 -----DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT  156 (317)
Q Consensus        82 -----dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~  156 (317)
                           .-.+.+|++++.   .....+......-++..|+.|..  +++=-..+.+.+|++.+.+.+.. +-|...++.+.
T Consensus        99 ~~~~~~pn~~v~~vet~---~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~  172 (566)
T KOG2315|consen   99 PKNASNPNVLVYNVETG---VQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLS  172 (566)
T ss_pred             CCCCCCCceeeeeeccc---eehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceee-eeeccceeeEE
Confidence                 234779998863   33333332222226788888765  33333456788888765322111 11233344444


Q ss_pred             Eec----------------------------------------------------CCCCeEEEEeC-----------CCe
Q 021121          157 WNP----------------------------------------------------RHSDVFCSASG-----------DCT  173 (317)
Q Consensus       157 ~~~----------------------------------------------------~~~~~l~~~~~-----------dg~  173 (317)
                      ++|                                                    .+..+|+.++.           +.+
T Consensus       173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~  252 (566)
T KOG2315|consen  173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT  252 (566)
T ss_pred             ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence            444                                                    32223322221           123


Q ss_pred             EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE--EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCee
Q 021121          174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS--ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (317)
                      +++++++..+....+ ...++|.++.|+| +++.+++  |-.--.+.+||++..  ++..+.  .++=+++-|+|.|+. 
T Consensus       253 Lyll~t~g~s~~V~L-~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~--~v~df~--egpRN~~~fnp~g~i-  325 (566)
T KOG2315|consen  253 LYLLATQGESVSVPL-LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGK--PVFDFP--EGPRNTAFFNPHGNI-  325 (566)
T ss_pred             EEEEEecCceEEEec-CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCCCC--EeEeCC--CCCccceEECCCCCE-
Confidence            455554422222222 2467899999999 7765554  445568999999852  344443  456688999999994 


Q ss_pred             EEeeec---CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec------CCcEEEEecCCC
Q 021121          252 LASCSY---DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW------DELVYVWQQGMD  313 (317)
Q Consensus       252 l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~~w~~~~~  313 (317)
                      |+.++.   -|.|.|||+.+.+ ++..+....  -+-+.|+|+ +.+++|+..      |+.++||+....
T Consensus       326 i~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~--tt~~eW~Pd-Ge~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  326 ILLAGFGNLPGDMEVWDVPNRK-LIAKFKAAN--TTVFEWSPD-GEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEeecCCCCCceEEEeccchh-hccccccCC--ceEEEEcCC-CcEEEEEeccccEEecCCeEEEEecCc
Confidence            555543   4789999999855 555655433  456799999 778877763      788999998653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=2.1e-11  Score=94.91  Aligned_cols=272  Identities=11%  Similarity=0.111  Sum_probs=180.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCC-CCCCCceeeccCCcceEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALP-PTANPIRSLHEHTREVHS  111 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~-~~~~~~~~~~~~~~~v~~  111 (317)
                      +.-|++|++++....+.........+.++-|+|+|+. +.|.++..   +|.|..|.++.. .....+........+-+-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            5689999999666566666666788889999999997 46666654   478889988753 122222222222334478


Q ss_pred             EEEecCCCCEEEEE-cCCCEEEEEEcCC-CceeE--Eeeccccc----------eEEEEEecCCCCeEEEEeC-CCeEEE
Q 021121          112 ADYNPTRRDSFITS-SWDDTVKLWTVDR-PTSVR--TFKEHAYC----------VYNATWNPRHSDVFCSASG-DCTLRI  176 (317)
Q Consensus       112 ~~~~~~~~~~l~~~-~~dg~v~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~~~~~-dg~i~i  176 (317)
                      ++++++++ +++++ -..|.|.++-+++ |....  ....|.+.          +....+.|+ ++++++... .-.|.+
T Consensus        94 vsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~  171 (346)
T COG2706          94 VSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL  171 (346)
T ss_pred             EEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence            99999998 66655 4568999999865 32211  12224433          888999999 777766543 346999


Q ss_pred             EeCCCCCceeeec---cCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEec---------CCCceeEEE
Q 021121          177 WDVREMGSTMIIP---AHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNG---------HGYAVRKVK  243 (317)
Q Consensus       177 ~d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~---------~~~~v~~~~  243 (317)
                      |++..++....-.   ......+.|.|+| ++++..... -+++|-+|........+..++.         .......|.
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9999765432211   3445678999999 887766554 5889999998874322333322         134567899


Q ss_pred             ecCCCCeeEEeee-cCCeEEEEecccccc---eeeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCCC
Q 021121          244 FSPHRRNLLASCS-YDMTVCLWDFMVEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMD  313 (317)
Q Consensus       244 ~~~~~~~~l~~~~-~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~  313 (317)
                      .+|+|+ +|.++. ....|.+|.+.....   .......+....+...+++. +++|++++ .+..|.+|.++..
T Consensus       251 is~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         251 ISPDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             ECCCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCC
Confidence            999999 455544 345788887765532   22333334445788999998 66666665 4567999988764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=2.3e-12  Score=109.51  Aligned_cols=214  Identities=11%  Similarity=0.059  Sum_probs=136.3

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC---CEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD---DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .|.++|...    .....+..+...+....|+|+++ .++.+..+   ..|++||+.+++... +..+...+.+++|+|+
T Consensus       171 ~l~~~d~~g----~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDG----ANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCC----CCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence            567777643    23344455667788999999998 66655433   479999998876543 3335556778999999


Q ss_pred             CCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121          161 HSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       161 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +..++++.+.++  .|++||+.+++. ..+..+........|+| +++.|+..+. ++  .|+++|+.+.+  ...+..+
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~  320 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFR  320 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEeecC
Confidence            444555555544  588899887654 33333444455778999 8887766554 33  57778877654  3444445


Q ss_pred             CCceeEEEecCCCCeeEEeeecCC---eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC-C--cEEEEe
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDM---TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD-E--LVYVWQ  309 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~~w~  309 (317)
                      ........|+|+++. ++.++.++   .|.+||+.++..  ..+... .......|+|+ ++.|+..+.+ +  .+++.+
T Consensus       321 ~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~spd-g~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       321 GGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAPN-GRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             CCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECCC-CCEEEEEEeCCCcEEEEEEE
Confidence            556778899999984 66555554   788889877542  222222 22455689999 5555555443 2  455555


Q ss_pred             cCC
Q 021121          310 QGM  312 (317)
Q Consensus       310 ~~~  312 (317)
                      .+.
T Consensus       396 ~~g  398 (417)
T TIGR02800       396 TDG  398 (417)
T ss_pred             CCC
Confidence            443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.5e-12  Score=106.22  Aligned_cols=255  Identities=17%  Similarity=0.231  Sum_probs=166.6

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC-CeEEE-----EEcCCe
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD-SLLIA-----AVADGS   84 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~-----~~~dg~   84 (317)
                      .+.+|++  +..+++-..       .+.+++|++.........    -|...|+.+.++|-++ ..+|+     ++.-+.
T Consensus       129 W~~qfs~--dEsl~arlv-------~nev~f~~~~~f~~~~~k----l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~  195 (566)
T KOG2315|consen  129 WVPQFSI--DESLAARLV-------SNEVQFYDLGSFKTIQHK----LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS  195 (566)
T ss_pred             ccccccc--chhhhhhhh-------cceEEEEecCCccceeee----eeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence            4678888  444444433       568999999875432222    2567899999998743 33443     344578


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----------CEEEEEEcCCCceeEEeeccccceE
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----------DTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      |+||.+........+..-.-....=..+.|++-|..+|+.++.|           .++++.+++.....-.+. ..++|.
T Consensus       196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVh  274 (566)
T KOG2315|consen  196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVH  274 (566)
T ss_pred             EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCce
Confidence            99999874322222222111233445688998887666655432           468888887434443443 578999


Q ss_pred             EEEEecCCCCeEEE--EeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCcc
Q 021121          154 NATWNPRHSDVFCS--ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVP  228 (317)
Q Consensus       154 ~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~  228 (317)
                      ++.|+|+ +.-+++  |-.-.++.+||++ +.++..+  .+++-+++-|+| .+++++.++.+   |.+-+||..+.+ .
T Consensus       275 dv~W~~s-~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K-~  348 (566)
T KOG2315|consen  275 DVTWSPS-GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRK-L  348 (566)
T ss_pred             EEEECCC-CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchh-h
Confidence            9999999 544443  4456789999987 4555555  356678999999 89998888765   689999999854 4


Q ss_pred             EEEEecCCCceeEEEecCCCCeeEEeee------cCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          229 IAVLNGHGYAVRKVKFSPHRRNLLASCS------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      +..+....  -+-+.|+|+|++ ++|+.      -|+.++||+..... +.....  ......+.|-|-
T Consensus       349 i~~~~a~~--tt~~eW~PdGe~-flTATTaPRlrvdNg~KiwhytG~~-l~~~~f--~sEL~qv~W~P~  411 (566)
T KOG2315|consen  349 IAKFKAAN--TTVFEWSPDGEY-FLTATTAPRLRVDNGIKIWHYTGSL-LHEKMF--KSELLQVEWRPF  411 (566)
T ss_pred             ccccccCC--ceEEEEcCCCcE-EEEEeccccEEecCCeEEEEecCce-eehhhh--hHhHhheeeeec
Confidence            66666544  356899999995 65555      37889999976432 211111  114677788765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.56  E-value=4.1e-11  Score=109.16  Aligned_cols=290  Identities=14%  Similarity=0.202  Sum_probs=184.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC--CCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP--AAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      ....|.++.|-++ ...++++..       +|.|.+...+.  .......+.  .-..+|.+++||||.+ +|+..+.++
T Consensus        74 ~~~~ivs~~yl~d-~~~l~~~~~-------~Gdi~~~~~~~~~~~~~~E~VG--~vd~GI~a~~WSPD~E-lla~vT~~~  142 (928)
T PF04762_consen   74 PNDKIVSFQYLAD-SESLCIALA-------SGDIILVREDPDPDEDEIEIVG--SVDSGILAASWSPDEE-LLALVTGEG  142 (928)
T ss_pred             CCCcEEEEEeccC-CCcEEEEEC-------CceEEEEEccCCCCCceeEEEE--EEcCcEEEEEECCCcC-EEEEEeCCC
Confidence            3467889999996 445555555       78898883322  221233333  4567899999999985 888888888


Q ss_pred             eEEEEEeCCC------------CCC--------CCceeecc------------------------CCcceEEEEEecCCC
Q 021121           84 SVKIYDTALP------------PTA--------NPIRSLHE------------------------HTREVHSADYNPTRR  119 (317)
Q Consensus        84 ~i~v~~~~~~------------~~~--------~~~~~~~~------------------------~~~~v~~~~~~~~~~  119 (317)
                      ++.+..-.-.            +..        +....+++                        +...-..++|..||.
T Consensus       143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence            8877642211            000        00001100                        233456789999998


Q ss_pred             CEEEEEcC---C---CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCCCCCceee---
Q 021121          120 DSFITSSW---D---DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVREMGSTMI---  187 (317)
Q Consensus       120 ~~l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~---  187 (317)
                       ++++.+-   .   ..++||+-+ |........-.+--.+++|.|. ++++++.-.   ...|.+|.-+ |-.-..   
T Consensus       223 -yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l  298 (928)
T PF04762_consen  223 -YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERN-GLRHGEFTL  298 (928)
T ss_pred             -EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecC-CcEeeeEec
Confidence             8877653   2   579999965 5554444444444567899999 888887654   3457777733 322222   


Q ss_pred             -eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE-Ee-cCCCceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121          188 -IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-LN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       188 -~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vw  264 (317)
                       +......+..+.|++ ++..||....|. |.+|-..+..-.++. +. .....+..+.|+|.....|.....+|.+..+
T Consensus       299 ~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~  376 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY  376 (928)
T ss_pred             CCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence             223456799999999 999999987655 999998875422222 22 1233455699999877667767666666555


Q ss_pred             ecc----ccc-------ceeee-----------------------eecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          265 DFM----VED-------ALVGR-----------------------YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       265 d~~----~~~-------~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      ++.    .+.       ..+..                       .-....+|.+++|+++ ...+++-..||.|.+|..
T Consensus       377 ~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  377 DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEe
Confidence            432    110       00100                       1112467999999998 556888889999999997


Q ss_pred             CCC
Q 021121          311 GMD  313 (317)
Q Consensus       311 ~~~  313 (317)
                      ...
T Consensus       456 ~~~  458 (928)
T PF04762_consen  456 DLK  458 (928)
T ss_pred             cCC
Confidence            654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=7e-12  Score=106.82  Aligned_cols=215  Identities=13%  Similarity=0.082  Sum_probs=130.9

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc-CC--CEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS-WD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .|.++|.+..    ....+..+...+....|+|+|+ .|+..+ .+  ..|.+||+.+++... +....+......|+|+
T Consensus       180 ~l~~~d~~g~----~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGA----RAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCC----CceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC
Confidence            3666666532    2344445677889999999998 555443 32  469999998876543 3333444567899999


Q ss_pred             CCCeEEEEeCCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121          161 HSDVFCSASGDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       161 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +..++++...+|  .|+++|+.+++.. .+..+........|+| +++.++..+. ++  .|+++|+.+++.  ..+...
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~  329 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFV  329 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEeecC
Confidence            444444555555  5888899876543 3444455566788999 7776665553 33  577778766542  222222


Q ss_pred             CCceeEEEecCCCCeeEEeeecCC--eEEEEecccccceeeeeecccceeEeEEEEeccCCeEE-EeecCC--cEEEEec
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA-STGWDE--LVYVWQQ  310 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg--~i~~w~~  310 (317)
                      ........|+|+++.++++...++  .|.++|+.+++..  .+.. ........|+|+ ++.++ +...+|  .|.++++
T Consensus       330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~~~~~p~~spd-g~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TSLDESPSVAPN-GTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CCCCCCceECCC-CCEEEEEEecCCceEEEEEEC
Confidence            223346789999996444443343  5788898876532  2221 122335689999 55554 444444  4556665


Q ss_pred             CC
Q 021121          311 GM  312 (317)
Q Consensus       311 ~~  312 (317)
                      +.
T Consensus       406 ~g  407 (430)
T PRK00178        406 NG  407 (430)
T ss_pred             CC
Confidence            44

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.55  E-value=8.5e-13  Score=101.51  Aligned_cols=246  Identities=17%  Similarity=0.173  Sum_probs=179.1

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ++.+.+++...-|.. .-+++.+.|.+++||--....+.-+- ....-..+++++.+.++.. .|+.|-..|++.-+.+.
T Consensus        22 G~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wps-I~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPS-IYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALS   98 (404)
T ss_pred             CchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCch-hhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhh
Confidence            566677777777765 47889999999999964432221111 1123467889999999877 89999999999988654


Q ss_pred             ----CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          138 ----RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       138 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                          .....+.+..|..++..+-|+-. ...+++.+.|..+.---.+.+..+-.+. ......++.+.-   .+...|..
T Consensus        99 edfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~fvGd~  173 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAFVGDH  173 (404)
T ss_pred             hhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceee---EEEEeccc
Confidence                34556677789999999999987 7888899988877554444443332221 111112222221   14455555


Q ss_pred             CCcEEEEEccCC-CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          214 DKSIKIWDVRNY-RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       214 d~~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      .|.|..-.+... -.++..+.+|...+++++|.|..+ +|.+|..|..+.+||+...+.....+.+|...|..++..+. 
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~-  251 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH-  251 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh-
Confidence            666665554432 235778899999999999999887 89999999999999998887777888999999999988776 


Q ss_pred             CCeEEEeecCCcEEEEecCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      -..+.+++.||.|.+|+++-.
T Consensus       252 t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  252 TRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             heeeeeccCCCeEEEEeccce
Confidence            779999999999999999753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=7.3e-12  Score=105.67  Aligned_cols=228  Identities=10%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             cceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC---
Q 021121            8 FNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG---   83 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---   83 (317)
                      ....+-+|||++... ++......    +...|++.++..+.  ...+.  ...+.....+|+|||..++++...+|   
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~--~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPA--GKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccC----CCceEEEEECCCCC--ceEee--cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            345567899964332 22233321    13467888887654  23333  23445567899999964444443333   


Q ss_pred             -eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE--EcCC-CceeEEeeccccceEEEEEec
Q 021121           84 -SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW--TVDR-PTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        84 -~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw--d~~~-~~~~~~~~~~~~~v~~~~~~~  159 (317)
                       .+..|++..+...........+.+......|+|||+.++++...+|...+|  ++.. +.....+......+....|+|
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP  336 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP  336 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence             344466654311222222323333446789999998444455556655555  4432 233444444455677889999


Q ss_pred             CCCCeEEEEeC-C--CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccCCCccEEEEe
Q 021121          160 RHSDVFCSASG-D--CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       160 ~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~  233 (317)
                      + ++.|+..+. +  ..|.+||+.+++... +......+....|+| +++.|+....   ...|+++|+...+  ...+.
T Consensus       337 D-G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~--~~~Lt  411 (428)
T PRK01029        337 D-GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLITKK--TRKIV  411 (428)
T ss_pred             C-CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEee
Confidence            9 665555443 3  469999998876543 332334567899999 8877765432   3468888987654  23333


Q ss_pred             cCCCceeEEEecCCC
Q 021121          234 GHGYAVRKVKFSPHR  248 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~  248 (317)
                      ...+.+...+|+|..
T Consensus       412 ~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        412 IGSGEKRFPSWGAFP  426 (428)
T ss_pred             cCCCcccCceecCCC
Confidence            344556778888754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.53  E-value=1.2e-13  Score=116.27  Aligned_cols=251  Identities=19%  Similarity=0.317  Sum_probs=181.5

Q ss_pred             cceeEEEEecCCC-CeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            8 FNGYSVKFSPFYE-SRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         8 ~~v~~~~~~p~~~-~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      -.|-.+.|+|+.. ...+++.+       ...-.+|++........++...+|..+|+.+.|+|+.+..+++++.|..+.
T Consensus        68 w~vad~qws~h~a~~~wiVsts-------~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh  140 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTS-------NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVH  140 (1081)
T ss_pred             chhcceecccCCCCceeEEecC-------cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccce
Confidence            4456788998653 44555555       557889999887766777788899999999999999989999999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      .||++..  ..++.....-......++|+-..+ .+++.+....|.+||.+.+ .++..+++|...++.++|+..-...+
T Consensus       141 ~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~  217 (1081)
T KOG0309|consen  141 AWDMRSP--HRPFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI  217 (1081)
T ss_pred             eeeccCC--CcceeeeecccccCceeeecccCc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh
Confidence            9999865  244555554556677899987777 4556666778999999876 56778888999999999987656678


Q ss_pred             EEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEE----------EecCCcEEEEEccCCCccEEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIAS----------ASVDKSIKIWDVRNYRVPIAVLNG  234 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~----------~~~d~~i~v~d~~~~~~~~~~~~~  234 (317)
                      .+++.||+|+.||........ .......++..-++-|....+++-          --.+..-..|+..+...++..+.+
T Consensus       218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G  297 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG  297 (1081)
T ss_pred             cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence            899999999999987542211 112234455555555532222211          111223344555566678999999


Q ss_pred             CCCceeEEEecCCC---------CeeEEeeecCCeEEEEeccc
Q 021121          235 HGYAVRKVKFSPHR---------RNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       235 ~~~~v~~~~~~~~~---------~~~l~~~~~d~~i~vwd~~~  268 (317)
                      |...|....|-..+         ..-|++-+.|..+++|-+.+
T Consensus       298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99988777664322         23589999999999998765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=8.8e-12  Score=101.86  Aligned_cols=279  Identities=13%  Similarity=0.185  Sum_probs=167.0

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-------
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-------   82 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------   82 (317)
                      -+-+.|||  .|.++++...       .-|.+|-    +..+..+..+.|+ .|.-+.|||.. ++|++=+..       
T Consensus       213 etyv~wSP--~GTYL~t~Hk-------~GI~lWG----G~~f~r~~RF~Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~  277 (698)
T KOG2314|consen  213 ETYVRWSP--KGTYLVTFHK-------QGIALWG----GESFDRIQRFYHP-GVQFIDFSPNE-KYLVTYSPEPIIVEED  277 (698)
T ss_pred             eeeEEecC--CceEEEEEec-------cceeeec----CccHHHHHhccCC-CceeeecCCcc-ceEEEecCCccccCcc
Confidence            35689999  7999998874       3688994    3345567777776 58899999986 688886532       


Q ss_pred             ----CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEe
Q 021121           83 ----GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN  158 (317)
Q Consensus        83 ----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (317)
                          ..+.|||+.++........+......-.-+.||.|++ ++|--.. ..|.||+..+...+..-.-.-..|....|+
T Consensus       278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsws  355 (698)
T KOG2314|consen  278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWS  355 (698)
T ss_pred             cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecccccCCccccCcccC
Confidence                5799999998833222222222222233468999988 7776665 578888865432221111112234444555


Q ss_pred             cCCCCeEE-----------------------------------------------EE----------eCCCeEEEEeCCC
Q 021121          159 PRHSDVFC-----------------------------------------------SA----------SGDCTLRIWDVRE  181 (317)
Q Consensus       159 ~~~~~~l~-----------------------------------------------~~----------~~dg~i~i~d~~~  181 (317)
                      |. +++||                                               .-          +.-..+.|+.++.
T Consensus       356 P~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire  434 (698)
T KOG2314|consen  356 PT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE  434 (698)
T ss_pred             CC-cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence            54 33333                                               11          0011233333333


Q ss_pred             CCceeeeccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccC-CCcc--EEEEecCCCceeEEEecCCCCeeEEee
Q 021121          182 MGSTMIIPAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRN-YRVP--IAVLNGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       182 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      .......-.....|...+|-| .|+.+++-+.   ..++.+|-+++ ...+  +..+.  ....+.+.|+|.|+ +++.+
T Consensus       435 KdIpve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~-fvvva  510 (698)
T KOG2314|consen  435 KDIPVEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGR-FVVVA  510 (698)
T ss_pred             cCCCceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCc-EEEEE
Confidence            322222223455688899999 6666655443   24688888873 2221  22232  24578899999999 55544


Q ss_pred             e---cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec------CCcEEEEecCC
Q 021121          256 S---YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW------DELVYVWQQGM  312 (317)
Q Consensus       256 ~---~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~~w~~~~  312 (317)
                      .   ..|.+.++|+............| ...+.+.|.|. |+++++++.      |.--++|++..
T Consensus       511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  511 ALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             EecccccceEEEecchhhhhhccCccc-cccccceECCC-CCEEEEeeehhhhccccceEEEEeec
Confidence            3   57889999987533222222233 34678999999 889998875      44456776643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=6.7e-10  Score=86.64  Aligned_cols=257  Identities=16%  Similarity=0.184  Sum_probs=167.9

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC-CCeeEEEecCCCCCeEEEE-EcC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA-DGVYDLAWSESHDSLLIAA-VAD   82 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~-~~d   82 (317)
                      .....++-|+|+|  +.+.+.+....   ...|.|--|.++.....+..+...... .+-..++.+++++ +++++ ...
T Consensus        37 ~~~~nptyl~~~~--~~~~LY~v~~~---~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~  110 (346)
T COG2706          37 AELGNPTYLAVNP--DQRHLYVVNEP---GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHS  110 (346)
T ss_pred             cccCCCceEEECC--CCCEEEEEEec---CCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccC
Confidence            3456677899999  56555555431   016889999998764445544443322 2348899999985 55555 456


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcc----------eEEEEEecCCCCEEEEEc-CCCEEEEEEcCCCceeEEee---cc
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTRE----------VHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTFK---EH  148 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~---~~  148 (317)
                      |.|.++.+..............|.+.          +....+.|+++ +|++.+ ..-.|.+|++..++....-.   ..
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccccccccccCC
Confidence            89999999765333333333345544          88899999998 666553 34589999999775433211   34


Q ss_pred             ccceEEEEEecCCCCeEEEE-eCCCeEEEEeCCCC-Cceeeec---------cCccceEEEEecCCCCcEEEEEecC-Cc
Q 021121          149 AYCVYNATWNPRHSDVFCSA-SGDCTLRIWDVREM-GSTMIIP---------AHEFEILACDWNKYDDCLIASASVD-KS  216 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~d-~~  216 (317)
                      ......|.|+|+ +++.... --+++|.+|..... .....++         ........|..+| ++++|.++... ..
T Consensus       190 G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~ds  267 (346)
T COG2706         190 GAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDS  267 (346)
T ss_pred             CCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCe
Confidence            556899999999 6766554 45899999998763 2222221         1234567889999 99998887532 36


Q ss_pred             EEEEEccCCCccEEE---EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          217 IKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       217 i~v~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      |.+|.+......+..   ...+....+...|+|.++.++++.-.+..|.+|......
T Consensus       268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            888877654332332   233445578999999999555555455679999866543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.2e-13  Score=126.07  Aligned_cols=224  Identities=14%  Similarity=0.278  Sum_probs=163.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+-..|.++.=+|..+ +.++|+.||.|++|....+   ..+..+. .-...|+.+.|+.+|+ .+..+..||.+.+|.+
T Consensus      2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~---~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHG---QQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             cccCceeeecCCCCCc-eEEecCCCceEEEEeccCC---CeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeeccc
Confidence            3455688888899874 8889999999999998766   3443333 2348899999999998 8888999999999998


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEe---CCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS---GDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      . .+.....+.|......+.|-.   ..+++++   .++.+.+||..-... -..-..|...++++++-| ..++|++|+
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGG 2355 (2439)
T ss_pred             C-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecC
Confidence            7 667777888999899999984   5666654   578899999753321 112267999999999999 999999999


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-c--cc--eeEeEE
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-H--TE--FAVGVD  287 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~--~~--~v~~~~  287 (317)
                      .+|.|++||++..+. .+.++.         +. .. .++++|+..|.|+||++.... ++..+.. |  .+  ...++.
T Consensus      2356 r~G~v~l~D~rqrql-~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~-ll~~~p~e~ak~gfFr~~g~Q 2422 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQL-RHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFG-LLHTFPSEHAKQGFFRNIGMQ 2422 (2439)
T ss_pred             CcCcEEEeehHHHHH-HHHhhh---------hh-hh-heeeccCcccceEEEEccccc-hhhcCchhhcccchhhhcCce
Confidence            999999999997543 444332         43 33 379999999999999998764 3333221 1  11  122233


Q ss_pred             EEeccCCeEEEeecCCc
Q 021121          288 MSVLVEGLLASTGWDEL  304 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~  304 (317)
                      ..-+-.+.|.+++.||+
T Consensus      2423 ~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2423 INVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             eeeccCceEEEecCCCC
Confidence            32222457888888874

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.52  E-value=1.8e-11  Score=91.38  Aligned_cols=266  Identities=13%  Similarity=0.033  Sum_probs=169.7

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC----CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES----HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS  111 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~  111 (317)
                      .-.+.+|++-+......++.        ..+.|-|-    ...+|+.|+..|...+|...+.+  ........|...|+-
T Consensus        51 t~sv~i~~~y~N~~~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~--~h~~~cd~snn~v~~  120 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND--GHLYQCDVSNNDVTL  120 (344)
T ss_pred             eeeeEeccccCCchhhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcc--cceeeecccccchhh
Confidence            44677888765542222221        33455541    12489999999999999987542  222222334443332


Q ss_pred             EEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-e-e-ee
Q 021121          112 ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-T-M-II  188 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~-~~  188 (317)
                      +.=.-+....+..++.|.++++.+++.+..........-.+.+++++++ +.++++.++...|..|.+..... + . ..
T Consensus       121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~  199 (344)
T KOG4532|consen  121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYE  199 (344)
T ss_pred             hhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEe
Confidence            2222222335777888889999888765443333222234889999999 89999999999999999876432 2 2 22


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE----EecCCCceeEEEecCCCCe-eEEeeecCCeEEE
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV----LNGHGYAVRKVKFSPHRRN-LLASCSYDMTVCL  263 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~v  263 (317)
                      ......-.+..|+. ....+|++..||++.|||+|....+...    ...|++.++.+.|++.|.. +|...-.-+.+.+
T Consensus       200 a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv  278 (344)
T KOG4532|consen  200 APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV  278 (344)
T ss_pred             cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence            23334456788998 8889999999999999999987765443    3458899999999986642 4554555678999


Q ss_pred             Eecccccceeee------eeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          264 WDFMVEDALVGR------YDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       264 wd~~~~~~~~~~------~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      .|+++.......      ...|. ..|.+-.|+.+ +..+.+.+.+. +.-|++....|
T Consensus       279 ~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~-n~s~~v~~e~~-~ae~ni~srsR  335 (344)
T KOG4532|consen  279 VDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE-NESNDVKNELQ-GAEYNILSRSR  335 (344)
T ss_pred             EEcccCceeeEEecCccccccccccccccccccCC-Ccccccccchh-hheeeccccce
Confidence            999987632211      11232 34888888877 44444444332 45566655433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.7e-11  Score=103.07  Aligned_cols=216  Identities=11%  Similarity=0.034  Sum_probs=129.1

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEE-cCC--CEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SWD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .+.++|.+..    ....+..+...+.+..|+|+|+ .|+.. ..+  ..|.+||+.+++... +....+.....+|+|+
T Consensus       199 ~l~i~d~dG~----~~~~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGY----NEQMLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCC----CceEeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence            5666665432    2234445677888999999998 55544 333  368899998876532 2222334457899999


Q ss_pred             CCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecC
Q 021121          161 HSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       161 ~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +..++++.+.+|.  |+++|+.+++. ..+..+........|+| +++.++..+. ++  .|+++|+.+++.  ..+...
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~  348 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFE  348 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEEecC
Confidence            4445555666665  88888877654 34444445567789999 7877765543 33  466667766542  333222


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCe--EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc--EEEEecC
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMT--VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL--VYVWQQG  311 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~~w~~~  311 (317)
                      .......+|+|+|+.++++...++.  |.++|+.+++.  ..+... .......|+|++..++++...+|.  +++++.+
T Consensus       349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            2233467899999965555544554  55567766642  222221 122345899994444555555554  5666654


Q ss_pred             C
Q 021121          312 M  312 (317)
Q Consensus       312 ~  312 (317)
                      .
T Consensus       426 G  426 (448)
T PRK04792        426 G  426 (448)
T ss_pred             C
Confidence            4

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.52  E-value=2.4e-10  Score=92.20  Aligned_cols=260  Identities=12%  Similarity=0.060  Sum_probs=153.4

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE---------cCCeEEEEEeCCCCCCCCceeeccC--
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV---------ADGSVKIYDTALPPTANPIRSLHEH--  105 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~v~~~~~~~~~~~~~~~~~~--  105 (317)
                      ++|.+.|....+    .+........-..+ ++|++..+.++.+         .+..|.+||..+.   +....+..-  
T Consensus        27 ~~v~ViD~~~~~----v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGR----VLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCCCE----EEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCC
Confidence            799999998754    22323332233344 9999865555556         5889999999876   444444321  


Q ss_pred             -----CcceEEEEEecCCCCEEEEEc-C-CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121          106 -----TREVHSADYNPTRRDSFITSS-W-DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD  178 (317)
Q Consensus       106 -----~~~v~~~~~~~~~~~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (317)
                           ...-..++++|+|+ +++... . +..|.+.|+.+++.+.++.-.. ...-...++. ..+  +-+.||......
T Consensus        99 p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~--~~~~Dg~~~~v~  173 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-TFF--MHCRDGSLAKVG  173 (352)
T ss_pred             chhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-ccE--EEeecCceEEEE
Confidence                 22334789999998 566544 3 7999999999999988876422 2222222221 222  223344444433


Q ss_pred             CCCCCcee-----eeccCccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCC----ccEEEEec-------CCCceeE
Q 021121          179 VREMGSTM-----IIPAHEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYR----VPIAVLNG-------HGYAVRK  241 (317)
Q Consensus       179 ~~~~~~~~-----~~~~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~-------~~~~v~~  241 (317)
                      +.+.....     .+.....++ ..-.+.+.++.++.+..+ |.|.+.|+....    .+...+..       ..+...-
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~  252 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ  252 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence            32211111     111100010 000334436777766665 999999965432    11222111       2334455


Q ss_pred             EEecCCCCeeEEee---------ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC-eEEEee-cCCcEEEEec
Q 021121          242 VKFSPHRRNLLASC---------SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTG-WDELVYVWQQ  310 (317)
Q Consensus       242 ~~~~~~~~~~l~~~---------~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~i~~w~~  310 (317)
                      ++++|+++++++..         ...+.|.++|..+.+.. ..+.- ...+..++++|+ ++ +|++.. .++.|.+.|.
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-~~i~v-G~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-RKIEL-GHEIDSINVSQD-AKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-EEEeC-CCceeeEEECCC-CCeEEEEeCCCCCcEEEEEC
Confidence            99999999655433         12257999999988743 44332 346889999999 55 666554 6889999998


Q ss_pred             CCC
Q 021121          311 GMD  313 (317)
Q Consensus       311 ~~~  313 (317)
                      .+.
T Consensus       330 ~t~  332 (352)
T TIGR02658       330 ETG  332 (352)
T ss_pred             cCC
Confidence            765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.51  E-value=4.8e-13  Score=99.08  Aligned_cols=240  Identities=13%  Similarity=0.165  Sum_probs=147.6

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCC---------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALP---------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      ++.+.+.-+  ..|+++..++.+..+.....         ....+...+..|.++-.+-+.+-.+. -++++..||.+.+
T Consensus        39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence            667777754  47777777766555543221         11123333333444333333333333 6999999999999


Q ss_pred             EEcCCCcee-EEeeccccceEEEEEecCCCCeEEEEe-----CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE
Q 021121          134 WTVDRPTSV-RTFKEHAYCVYNATWNPRHSDVFCSAS-----GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       134 wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  207 (317)
                      ++.+.-..+ .+.......-.+.+.... ++.+.++.     .-+..+.|+++..+....-......+.+++-+|...++
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~-~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~  194 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICRH-GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHL  194 (319)
T ss_pred             EechHHHhhhhhcccccccccccceeec-ccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccE
Confidence            987652111 111111111112222222 33333321     23346677776554433322233449999999977888


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-----------------
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-----------------  270 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----------------  270 (317)
                      +++|+.||.+.+||.++...+...+..|+.+++.+-|+|..+.-|+++++||.+--||..+.-                 
T Consensus       195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD  274 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGD  274 (319)
T ss_pred             EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCC
Confidence            999999999999999998888888999999999999999887779999999999999977421                 


Q ss_pred             cee------eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          271 ALV------GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       271 ~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +..      ..+......|+++...   +..|++|+.-+.|++++
T Consensus       275 ~v~s~i~i~~ll~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  275 PVKSRIEITSLLPSRSLSINSFDVL---GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccceEeeeccccccceeeeeeecc---CceEEeccccceEEEec
Confidence            000      0011112234444443   56899999889998875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=1.5e-12  Score=113.43  Aligned_cols=183  Identities=15%  Similarity=0.227  Sum_probs=143.7

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce--E---EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV--H---SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH  148 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v--~---~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  148 (317)
                      ..++.++.+..+.+||....   ....... +....  .   -+.++++.- ++++|+--+.|.+|+....+.-..+.+|
T Consensus       100 k~i~l~~~~ns~~i~d~~~~---~~~~~i~-~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~GH  174 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNS---SVLSKIQ-SDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLKGH  174 (967)
T ss_pred             ceEEEEEcCceEEEEecccC---ceehhcC-CCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcceeccc
Confidence            57788888889999998754   3333222 22221  1   122344433 8899999999999999855444468899


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      .+.+.++.|+-+ +.++++.++|.++++|++.+.+... ..-+|...+..+.+.| .  .++++++|-+.++|+..... 
T Consensus       175 eG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~-  249 (967)
T KOG0974|consen  175 EGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQ-  249 (967)
T ss_pred             CCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccce-
Confidence            999999999998 9999999999999999999987766 5567999999999998 5  89999999999999766533 


Q ss_pred             cEEEEecCC-CceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          228 PIAVLNGHG-YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       228 ~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                       +..+.+|. ..++.++..+... +++|++.|+.+++|++..
T Consensus       250 -l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  250 -LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence             44666664 5789999988876 799999999999999765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=1.8e-13  Score=124.99  Aligned_cols=190  Identities=17%  Similarity=0.303  Sum_probs=152.6

Q ss_pred             CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121          105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG  183 (317)
Q Consensus       105 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (317)
                      +-..|.++.=+|... +.++|+.||.|++|....++.+..++ .....++.+.|+.+ |+.+..+..||.+.+|... .+
T Consensus      2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-CCceeeeccCCceeecccC-Cc
Confidence            445677777788877 89999999999999998888877765 23478999999998 7888889999999999987 66


Q ss_pred             ceeeeccCccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121          184 STMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT  260 (317)
Q Consensus       184 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  260 (317)
                      +....+.|......+.|-.   ..+++++   .++.+.+||.......-.....|.+.++++++.|..+ +|++|+.+|.
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGE 2359 (2439)
T ss_pred             ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCc
Confidence            7777888888888888864   4566654   5678999997654332333478999999999999988 8999999999


Q ss_pred             EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          261 VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       261 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |++||++..+ +.+.++.         +. . ..++++|+..|.++||++...
T Consensus      2360 v~l~D~rqrq-l~h~~~~---------~~-~-~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2360 VCLFDIRQRQ-LRHTFQA---------LD-T-REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEEeehHHHH-HHHHhhh---------hh-h-hheeeccCcccceEEEEcccc
Confidence            9999998765 4333332         33 2 679999999999999999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.51  E-value=1.1e-10  Score=108.39  Aligned_cols=242  Identities=15%  Similarity=0.220  Sum_probs=156.4

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec------------CCCCeeEEEecCCCCCeEEE
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD------------TADGVYDLAWSESHDSLLIA   78 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~   78 (317)
                      ..+++++. ++.+.++-..      +++|+++|.....  .......+            .-.....+++.++++.+.++
T Consensus       571 ~gvavd~~-~g~lyVaDs~------n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa  641 (1057)
T PLN02919        571 GKLAIDLL-NNRLFISDSN------HNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA  641 (1057)
T ss_pred             ceEEEECC-CCeEEEEECC------CCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence            35778774 4555555543      7899999976431  11111100            11235788999887434444


Q ss_pred             EEcCCeEEEEEeCCCCCCCCceeecc----------C-------CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121           79 AVADGSVKIYDTALPPTANPIRSLHE----------H-------TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus        79 ~~~dg~i~v~~~~~~~~~~~~~~~~~----------~-------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      -..++.|+++|+.++    .+..+.+          .       -..-..++++|++..++++.+.++.|++||..++..
T Consensus       642 Dt~n~~Ir~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        642 DTENHALREIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             eCCCceEEEEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            445678999987653    1211110          0       112357899996554778888889999999877643


Q ss_pred             eEEeec---------------cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-------------cC--
Q 021121          142 VRTFKE---------------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-------------AH--  191 (317)
Q Consensus       142 ~~~~~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~--  191 (317)
                      . .+.+               .-.....++++|++..++++-+.++.|++||+.++.......             ..  
T Consensus       718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            2 2111               112457799999944477777788999999998764321110             00  


Q ss_pred             ------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC--------------CCceeEEEecCCCCee
Q 021121          192 ------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH--------------GYAVRKVKFSPHRRNL  251 (317)
Q Consensus       192 ------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~  251 (317)
                            -.....+++++ +++++++-..++.|++||..+..  +..+.+.              -.....++++++|+ +
T Consensus       797 ~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-l  872 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-L  872 (1057)
T ss_pred             chhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-E
Confidence                  01235788998 88899998999999999987654  2222221              12467899999997 7


Q ss_pred             EEeeecCCeEEEEeccccc
Q 021121          252 LASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       252 l~~~~~d~~i~vwd~~~~~  270 (317)
                      +++-+.++.|++||+.+++
T Consensus       873 yVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        873 FVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCEEEEEECCCCc
Confidence            8888889999999998865

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=2.8e-12  Score=97.67  Aligned_cols=247  Identities=17%  Similarity=0.309  Sum_probs=171.6

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC--CCCCceeeccCC------------cceEEEEEecC-CCCEEE
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP--TANPIRSLHEHT------------REVHSADYNPT-RRDSFI  123 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~l~  123 (317)
                      ....|+++.|...| .++++|...|+|.+|.-+...  ..+....+++|.            ..|..+.|..+ +...++
T Consensus        25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            45679999999988 699999999999999865431  122333455554            45788888644 455788


Q ss_pred             EEcCCCEEEEEEcCCCc------------------------------------------eeEEe-eccccceEEEEEecC
Q 021121          124 TSSWDDTVKLWTVDRPT------------------------------------------SVRTF-KEHAYCVYNATWNPR  160 (317)
Q Consensus       124 ~~~~dg~v~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~  160 (317)
                      ..+.|.+|++|.+....                                          +.+.+ ..|..-++++.|+.+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            88889999999875320                                          00011 346667889999987


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCce---eeeccCc-----cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE--
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGST---MIIPAHE-----FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA--  230 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~-----~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--  230 (317)
                       ...+++ ..|-.|.+|++.-....   ..+++|.     .-|++..|+|...+.+...+..|.|++-|+|....+..  
T Consensus       184 -~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         184 -KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             -hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence             565544 46778999998754332   2233333     34889999997788888889999999999995432111  


Q ss_pred             -------------EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc------------cee--
Q 021121          231 -------------VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT------------EFA--  283 (317)
Q Consensus       231 -------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------~~v--  283 (317)
                                   .+.+-...|..+.|+|+|+ ++++-+ --++++||++..+.++.+..-|.            ..|  
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence                         1112235788999999998 576554 46899999998877776665442            223  


Q ss_pred             -EeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          284 -VGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       284 -~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                       ..+.|+.+ ...+++|+..+..-+|-..
T Consensus       340 kFeisfSgd-~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         340 KFEISFSGD-DKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eEEEEecCC-cccccccccccceeeeccc
Confidence             35778887 7789999988887777643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=2.9e-11  Score=101.92  Aligned_cols=285  Identities=15%  Similarity=0.165  Sum_probs=191.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce------------eeeeecCCCCeeEEEecCCCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT------------ELVAFDTADGVYDLAWSESHD   73 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~   73 (317)
                      .+....|++|+.. .+.+++++.       ||.+++..+........            .....+|++.|.-+.|+.+. 
T Consensus        13 nnvkL~c~~WNke-~gyIAcgG~-------dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-   83 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKE-SGYIACGGA-------DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-   83 (1189)
T ss_pred             CCceEEEEEEccc-CCeEEeccc-------cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-
Confidence            4556789999993 455555554       99999999875432111            11223789999999999876 


Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-Eeeccccce
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-TFKEHAYCV  152 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v  152 (317)
                      ..|-+...+|.|.+|-+-.+ .+-....-...++.|.+++|+.+|. .+.....||.|.+=.++..+... .++  ....
T Consensus        84 QKLTtSDt~GlIiVWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l  159 (1189)
T KOG2041|consen   84 QKLTTSDTSGLIIVWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELK--GQLL  159 (1189)
T ss_pred             ccccccCCCceEEEEeeecc-cHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcc--hhec
Confidence            58889999999999998765 2222222234567899999999998 89999999999887776443221 122  2224


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-----cee--e----eccCccceEEEEec-------CCCCcEEEEEecC
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMG-----STM--I----IPAHEFEILACDWN-------KYDDCLIASASVD  214 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~--~----~~~~~~~v~~i~~~-------~~~~~~l~~~~~d  214 (317)
                      ..+.|+++ ...++.+-..|.+.+||.+..-     ...  .    +......+..+.|.       |.+...++++-.+
T Consensus       160 ~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  160 AHVLWSED-LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             cceeeccc-HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence            57889999 6777778888999999976421     101  1    11112235555553       2267789999999


Q ss_pred             CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC---------eEEEEecccccceeeeeecccceeEe
Q 021121          215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM---------TVCLWDFMVEDALVGRYDHHTEFAVG  285 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---------~i~vwd~~~~~~~~~~~~~~~~~v~~  285 (317)
                      |.+.+-.-.+...|+..-.+  -.+..+.|+++|. +|+.++.+.         .|.+|..- + ..+..++-....|++
T Consensus       239 Gr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~-G-~i~gtlkvpg~~It~  313 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPY-G-HIVGTLKVPGSCITG  313 (1189)
T ss_pred             ceehhhhhcCCCCCeEEecc--cEeecceecCCCc-EEEEccCcccccCccccceEEEeccc-h-hheEEEecCCceeee
Confidence            99998876665555554443  5788999999998 788877542         45555432 2 356677777888999


Q ss_pred             EEEEeccCCeEEEeecCCcEEEEecC
Q 021121          286 VDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       286 ~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ++|-.. +-.++.+ .|+.|++=+++
T Consensus       314 lsWEg~-gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  314 LSWEGT-GLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             eEEcCC-ceEEEEE-ecceEEEEeec
Confidence            999864 3333333 46666655544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.48  E-value=1.2e-10  Score=107.97  Aligned_cols=240  Identities=12%  Similarity=0.136  Sum_probs=158.8

Q ss_pred             eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc--------------CCcceEEEEEecCCCCEEEEEcCCC
Q 021121           64 YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE--------------HTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        64 ~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      ..+++++.+..++++-..++.|+++|....    .+..+..              +-.....+++.+++..++++-...+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            357888765457777778889999997532    2211111              1123578899988763344445567


Q ss_pred             EEEEEEcCCCceeEEeecc-----------------ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--
Q 021121          130 TVKLWTVDRPTSVRTFKEH-----------------AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--  190 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  190 (317)
                      .|+++|+.++. +..+.+.                 -.....++++|+++.++++.+.++.|++||..++... .+.+  
T Consensus       647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G  724 (1057)
T PLN02919        647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG  724 (1057)
T ss_pred             eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence            89999987654 3333110                 1235689999965788888888999999998765432 1111  


Q ss_pred             -------------CccceEEEEecCCCCc-EEEEEecCCcEEEEEccCCCccEEE------------EecC--------C
Q 021121          191 -------------HEFEILACDWNKYDDC-LIASASVDKSIKIWDVRNYRVPIAV------------LNGH--------G  236 (317)
Q Consensus       191 -------------~~~~v~~i~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~------------~~~~--------~  236 (317)
                                   .-.....++++| +++ ++++-..++.|++||+.++......            +...        -
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                         012346799999 665 6667677899999998865421110            0000        1


Q ss_pred             CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--------------ccceeEeEEEEeccCCeEEEeecC
Q 021121          237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--------------HTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      .....++++++|. ++++-..++.|++||..++. +. .+.+              .-....+++++++ ++++++-+.+
T Consensus       804 ~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~-v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d-G~lyVaDt~N  879 (1057)
T PLN02919        804 QHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR-VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGEN-GRLFVADTNN  879 (1057)
T ss_pred             cCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe-EE-EEeccCCcCCCCCcccccccCCceEEEEeCC-CCEEEEECCC
Confidence            1235899999998 78888889999999987764 21 2221              1124678999998 6788888899


Q ss_pred             CcEEEEecCCCC
Q 021121          303 ELVYVWQQGMDP  314 (317)
Q Consensus       303 g~i~~w~~~~~~  314 (317)
                      +.|++||+.+..
T Consensus       880 n~Irvid~~~~~  891 (1057)
T PLN02919        880 SLIRYLDLNKGE  891 (1057)
T ss_pred             CEEEEEECCCCc
Confidence            999999998753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.48  E-value=3.5e-10  Score=103.23  Aligned_cols=291  Identities=14%  Similarity=0.123  Sum_probs=182.7

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec------CCCCeeEEEecCCCCCeEEEEEc
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD------TADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ..+...+|.+..+..+++.+...    .+..|.+-...... ....+..++      ....|.++.|.++. ..++.+..
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~----~~~~i~~~~~~~~~-~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~~   95 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNE----IDYVIELDRFSQDG-SVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIALA   95 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCC----cceEEEEEeeccCC-ceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEEC
Confidence            45777888887555555554331    01344554444333 123333332      34689999999997 57888889


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC---------------C--------
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD---------------R--------  138 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~---------------~--------  138 (317)
                      +|.|.+...+.......+.....-...|.+++||||+. +++..+.++++.+.+-.               .        
T Consensus        96 ~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGW  174 (928)
T PF04762_consen   96 SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGW  174 (928)
T ss_pred             CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeecc
Confidence            99999993332222233334444577999999999998 88888888888887431               0        


Q ss_pred             CceeEEeec------------------------cccceEEEEEecCCCCeEEEEeC---C---CeEEEEeCCCCCceeee
Q 021121          139 PTSVRTFKE------------------------HAYCVYNATWNPRHSDVFCSASG---D---CTLRIWDVREMGSTMII  188 (317)
Q Consensus       139 ~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~  188 (317)
                      |+....|++                        ....-..++|-.| +.++++.+.   .   ..+++|+-+ |.....-
T Consensus       175 GkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD-G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS  252 (928)
T PF04762_consen  175 GKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD-GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS  252 (928)
T ss_pred             CcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC-CcEEEEEEEEcCCCceeEEEEECCC-ceEEecc
Confidence            011011110                        1224567889998 889888764   3   479999954 5443333


Q ss_pred             ccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCCCeeEEeeecCCeEEE
Q 021121          189 PAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCL  263 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~v  263 (317)
                      ..-.+--.+++|.| .|++||+.-.   ...|.+|.-+..+.--..+.  .....|..+.|++++. +||..-.|. |.+
T Consensus       253 E~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqL  329 (928)
T PF04762_consen  253 EPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQL  329 (928)
T ss_pred             ccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceE
Confidence            33333345789999 9999998764   34577777554332222222  3456899999999998 788776555 999


Q ss_pred             Eecccccc-eeeeee-cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          264 WDFMVEDA-LVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       264 wd~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      |-..+-.- +.+.+. .....+..+.|+|.....|.....+|.+..+++
T Consensus       330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            98877551 122222 122335559999986667777777677766554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.46  E-value=3.2e-10  Score=91.98  Aligned_cols=282  Identities=15%  Similarity=0.156  Sum_probs=181.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC--
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG--   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--   83 (317)
                      ...++..++|||  .+.++++...       -.|.+|.-....    .+..+.|+ .|..+.|+|.+ ++|.+=+..+  
T Consensus        31 ~~~p~~~~~~SP--~G~~l~~~~~-------~~V~~~~g~~~~----~l~~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~   95 (561)
T COG5354          31 ENWPVAYVSESP--LGTYLFSEHA-------AGVECWGGPSKA----KLVRFRHP-DVKYLDFSPNE-KYLVTWSREPII   95 (561)
T ss_pred             cCcchhheeecC--cchheehhhc-------cceEEccccchh----heeeeecC-CceecccCccc-ceeeeeccCCcc
Confidence            456788899999  7887777653       378899876544    33444444 58899999987 6888755433  


Q ss_pred             -------------eEEEEEeCCCC---------C---CCCcee---------------eccC---------------Ccc
Q 021121           84 -------------SVKIYDTALPP---------T---ANPIRS---------------LHEH---------------TRE  108 (317)
Q Consensus        84 -------------~i~v~~~~~~~---------~---~~~~~~---------------~~~~---------------~~~  108 (317)
                                   .+.+||...+.         +   ..++..               +.-|               ...
T Consensus        96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~g  175 (561)
T COG5354          96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVG  175 (561)
T ss_pred             ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccc
Confidence                         48899987751         0   000000               0001               134


Q ss_pred             eEEEEEecCCCC-EEEE-----EcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEE-----------eCC
Q 021121          109 VHSADYNPTRRD-SFIT-----SSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA-----------SGD  171 (317)
Q Consensus       109 v~~~~~~~~~~~-~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----------~~d  171 (317)
                      |....|+|.+++ .|+.     .+.++.+++|.+..+..+..-.-.+..-..+.|++. ++.++.-           -..
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~-g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL-GKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC-CceEEEEEEEeeecccceecc
Confidence            667778877432 2332     356788899988866665544433444466788888 4544321           123


Q ss_pred             CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE--ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCC
Q 021121          172 CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR  249 (317)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (317)
                      ..+++++++........ ...++|...+|.| .++.+++.  -.+..+.++|++..  ....+  ....=+.+.|+|.++
T Consensus       255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~rNT~~fsp~~r  328 (561)
T COG5354         255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYF--PEQKRNTIFFSPHER  328 (561)
T ss_pred             ceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc--eEEec--CCcccccccccCccc
Confidence            56888988744333332 5678999999999 55555443  47788999999874  12222  233456788999999


Q ss_pred             eeEEeeec---CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee------cCCcEEEEecCCC
Q 021121          250 NLLASCSY---DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG------WDELVYVWQQGMD  313 (317)
Q Consensus       250 ~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~i~~w~~~~~  313 (317)
                      + ++.++.   .|.+.+||......++..+.+..  ..-+.|+|+ ++++.+..      .|..+.+||+...
T Consensus       329 ~-il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd-~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         329 Y-ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPD-GQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             E-EEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCC-ceEEEecCCCcccccCcceEEEEecCc
Confidence            5 555443   47799999887765555555543  345689999 67665543      4889999998753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=3e-11  Score=102.65  Aligned_cols=286  Identities=15%  Similarity=0.123  Sum_probs=190.4

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-----------CCCeEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-----------HDSLLI   77 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~l~   77 (317)
                      .-.++.|+|  .|.++.++..        .|.+.|...-+ .++.+.  .|...|+.+.|.|.           ...+||
T Consensus        17 N~~A~Dw~~--~GLiAygshs--------lV~VVDs~s~q-~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   17 NRNAADWSP--SGLIAYGSHS--------LVSVVDSRSLQ-LIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccccccCc--cceEEEecCc--------eEEEEehhhhh-hhhccc--cCccceeEEEeccCCCchhccCccccceeEE
Confidence            345789999  7888888754        78888865543 122222  47788999999873           123677


Q ss_pred             EEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC---CCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEE
Q 021121           78 AAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT---RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN  154 (317)
Q Consensus        78 ~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  154 (317)
                      ++...|.|.+||....   ..+..++.|..++..++|-+.   .++.|++-....++.+|+..+|+...+.........|
T Consensus        84 saD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             eccccCcEEEEEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence            7888899999999876   666778888999999999653   3357777777889999999999999888877777888


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCc------eeee-ccCcc-------------------------ceEEEEecC
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGS------TMII-PAHEF-------------------------EILACDWNK  202 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~-~~~~~-------------------------~v~~i~~~~  202 (317)
                      +.+.|-+...+..-+..|.+.+.+.-..+.      ...+ ..|..                         ....++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            999998888888888889888877532111      1111 11111                         012356788


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCe-eEEeeecCCeEEEEecccccceee-------
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-LLASCSYDMTVCLWDFMVEDALVG-------  274 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~-------  274 (317)
                      .-.+. +.......+.++|++-.. ++....-..+.+.-+.+-|+.++ .|++.-.||.+.+|-.+.......       
T Consensus       241 ~~rn~-lfi~~prellv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~  318 (1062)
T KOG1912|consen  241 HWRNI-LFITFPRELLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLS  318 (1062)
T ss_pred             hhhce-EEEEeccceEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhc
Confidence            43444 444567789999998744 46665555555666777776533 788999999999997554211110       


Q ss_pred             --------eeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          275 --------RYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       275 --------~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                              .+.. .+..+......|..+..++.--.+|.+.+|.+..
T Consensus       319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~  365 (1062)
T KOG1912|consen  319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN  365 (1062)
T ss_pred             cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence                    0000 1112233344454344444444577788888874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8e-10  Score=92.85  Aligned_cols=214  Identities=7%  Similarity=0.027  Sum_probs=126.5

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      .|.+-|.+..+  .+.+.  .. +....-.|+|+|+..++..+.+   ..|.++|+.++   +. ..+....+......|
T Consensus       170 ~l~~~d~dg~~--~~~~~--~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~-~~lt~~~g~~~~~~~  240 (419)
T PRK04043        170 NIVLADYTLTY--QKVIV--KG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KK-EKIASSQGMLVVSDV  240 (419)
T ss_pred             eEEEECCCCCc--eeEEc--cC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cE-EEEecCCCcEEeeEE
Confidence            55555554443  22222  22 3677899999996545543333   46778887654   22 222234555667789


Q ss_pred             ecCCCCEEEEEcCC--CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeecc
Q 021121          115 NPTRRDSFITSSWD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       115 ~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~  190 (317)
                      +|||+.++++.+.+  ..|.++|+.+++. ..+..+........|+|++..++++....+  .|++.|+.+++..+....
T Consensus       241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~  319 (419)
T PRK04043        241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH  319 (419)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence            99998565665544  5688888877754 344433333445689999444555544444  588888877665333221


Q ss_pred             CccceEEEEecCCCCcEEEEEecC---------CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe-
Q 021121          191 HEFEILACDWNKYDDCLIASASVD---------KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-  260 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-  260 (317)
                       ..  ....|+| +++.++.....         ..|.+.|+.++.  ...+.... ......|+|+|+.++++....+. 
T Consensus       320 -g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~  392 (419)
T PRK04043        320 -GK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQS  392 (419)
T ss_pred             -CC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCCC-CcCCeEECCCCCEEEEEEccCCcE
Confidence             11  1248999 88877766543         267888887764  34443332 33468899999965555444343 


Q ss_pred             -EEEEeccc
Q 021121          261 -VCLWDFMV  268 (317)
Q Consensus       261 -i~vwd~~~  268 (317)
                       +.+.++..
T Consensus       393 ~L~~~~l~g  401 (419)
T PRK04043        393 ALGIIRLNY  401 (419)
T ss_pred             EEEEEecCC
Confidence             55555544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=1.5e-11  Score=93.69  Aligned_cols=249  Identities=17%  Similarity=0.317  Sum_probs=170.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--------------cceeeeeecCCCCeeEEEecCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--------------ALTELVAFDTADGVYDLAWSES   71 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~   71 (317)
                      ....|+++.|.-  .+.+++++..      .|+|.+|.-+....              .+.-+...+..+.|..+.|..+
T Consensus        25 ead~ItaVefd~--tg~YlatGDk------gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~   96 (460)
T COG5170          25 EADKITAVEFDE--TGLYLATGDK------GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD   96 (460)
T ss_pred             ccceeeEEEecc--ccceEeecCC------CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence            446788999988  6788888765      69999998765431              1111122234567899999764


Q ss_pred             -CCCeEEEEEcCCeEEEEEeCCCC-----------------CC----------------------CCceee-ccCCcceE
Q 021121           72 -HDSLLIAAVADGSVKIYDTALPP-----------------TA----------------------NPIRSL-HEHTREVH  110 (317)
Q Consensus        72 -~~~~l~~~~~dg~i~v~~~~~~~-----------------~~----------------------~~~~~~-~~~~~~v~  110 (317)
                       +...++..+.|.+|++|.+....                 .+                      .+.+.+ ..|.--+.
T Consensus        97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence             44567777889999999876430                 00                      001111 35777788


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCcee---EEeecc-----ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSV---RTFKEH-----AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM  182 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (317)
                      ++.|+.+.. .++++. |=.|.+|+++-....   ..++.|     ..-|++..|+|...+++.-.+..|.|++-|+|+.
T Consensus       177 SiS~NsD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         177 SISFNSDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeecCchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            999998876 666654 789999998754222   222323     3458899999998888888999999999999953


Q ss_pred             Cc------eee----------eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC----------
Q 021121          183 GS------TMI----------IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG----------  236 (317)
Q Consensus       183 ~~------~~~----------~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------  236 (317)
                      ..      +..          +......|..+.|++ +++++++-. --++++||.+..+.|+.+..-|.          
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y  332 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY  332 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence            21      111          112234578899999 898888765 35899999999888888876553          


Q ss_pred             --Cce---eEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          237 --YAV---RKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       237 --~~v---~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                        ..|   ..+.|+-+.++ +.+|+..+..-+|-+.
T Consensus       333 EnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~~  367 (460)
T COG5170         333 ENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPTD  367 (460)
T ss_pred             hccceeeeEEEEecCCccc-ccccccccceeeeccc
Confidence              122   35778888874 7888887777777643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.39  E-value=3.8e-09  Score=85.39  Aligned_cols=163  Identities=11%  Similarity=0.132  Sum_probs=123.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC-eEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG-SVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      .|+..|.+....-     ....++...|.-..+.-+++ -++.|..|| .+-|+|...+    ....+...-+.|.++..
T Consensus       340 RGkaFi~~~~~~~-----~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~v  409 (668)
T COG4946         340 RGKAFIMRPWDGY-----SIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKV  409 (668)
T ss_pred             cCcEEEECCCCCe-----eEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEE
Confidence            6788888765543     33346788899989988875 888899998 8999998765    44555666789999999


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC----eEEEEeCCCCCceeeecc
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC----TLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~  190 (317)
                      +++|+ .++.+.....+.+.|++++.....-+...+-|+.+.|+|+ +..++-+-.+|    .|+++|+..++....-. 
T Consensus       410 s~dGK-~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-  486 (668)
T COG4946         410 SPDGK-KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-  486 (668)
T ss_pred             cCCCc-EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEecC-
Confidence            99998 8999998999999999999876655666788999999998 88888766554    58999998876544332 


Q ss_pred             CccceEEEEecCCCCcEEEEEe
Q 021121          191 HEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      ....=.+-+|.| ++++|.--+
T Consensus       487 ~ta~DfsPaFD~-d~ryLYfLs  507 (668)
T COG4946         487 PTAYDFSPAFDP-DGRYLYFLS  507 (668)
T ss_pred             CcccccCcccCC-CCcEEEEEe
Confidence            333335667777 777665443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2.8e-11  Score=102.07  Aligned_cols=236  Identities=14%  Similarity=0.165  Sum_probs=166.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC------------CCCceeeccCCcceEEEEEecCCCCEEEEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT------------ANPIRSLHEHTREVHSADYNPTRRDSFITS  125 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  125 (317)
                      +......|++|+... .++++|+.||.+++..+.+...            ...-.++.+|++.|.-+.|+.+.+ .|-+.
T Consensus        12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence            445568899999986 6999999999999998876421            112245789999999999998876 89999


Q ss_pred             cCCCEEEEEEcCCCceeEEe--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC
Q 021121          126 SWDDTVKLWTVDRPTSVRTF--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY  203 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~  203 (317)
                      ..+|.|.+|-+-.+.-...+  ...++-|.+++|+.+ +..++....||.|.+=.+...+ +.--.-.......+.|++ 
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~-  166 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSE-  166 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecc-
Confidence            99999999998777543332  234667999999998 8888888899988876665332 111111112244788999 


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCc------cEEE----EecCCCceeEEEec--------CCCCeeEEeeecCCeEEEEe
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRV------PIAV----LNGHGYAVRKVKFS--------PHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~------~~~~----~~~~~~~v~~~~~~--------~~~~~~l~~~~~d~~i~vwd  265 (317)
                      +...++.+-..|.+.+||.+..-.      +...    +......|..+.|.        |+.+ .|+.+-.+|.+.|-.
T Consensus       167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMR  245 (1189)
T ss_pred             cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhh
Confidence            888888888899999999764211      1111    11122235556653        4666 688888899988876


Q ss_pred             cccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121          266 FMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      -.+...++-.  ...-.+.++.|+++ +..|+.+|.|
T Consensus       246 ~eND~~Pvv~--dtgm~~vgakWnh~-G~vLAvcG~~  279 (1189)
T KOG2041|consen  246 SENDPEPVVV--DTGMKIVGAKWNHN-GAVLAVCGND  279 (1189)
T ss_pred             hcCCCCCeEE--ecccEeecceecCC-CcEEEEccCc
Confidence            5554433322  23367899999999 8899998864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.37  E-value=3.2e-12  Score=94.82  Aligned_cols=200  Identities=14%  Similarity=0.109  Sum_probs=125.8

Q ss_pred             eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce------------eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121          109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS------------VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI  176 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (317)
                      +..+.+..+.  .|+++..++.+..+...++.+            .+.+..+.++-.+-+.+-. ++-+++++.||.+.+
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc-CCceEecCCCceEEE
Confidence            5555555432  566766666665554433322            2222223222222222222 567889999999999


Q ss_pred             EeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEe-----cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121          177 WDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASAS-----VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       177 ~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (317)
                      ++.+....+. .+......-.+..+.. .++.+.++.     .-+..+.|+++..+........- ..|++++-+|..++
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~  193 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQH  193 (319)
T ss_pred             EechHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeeccccccccccccccc-ccchhhhCCccccc
Confidence            9987521111 1111111111122222 333443332     12345666666543322222222 34999999999988


Q ss_pred             eEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          251 LLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       251 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ++++|+.||.+.+||.++...+...+..|+.++..+-|+|.++..|+++++||.+..||-++.
T Consensus       194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            999999999999999999887888899999999999999998899999999999999998753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.37  E-value=4.9e-09  Score=87.94  Aligned_cols=245  Identities=11%  Similarity=0.021  Sum_probs=143.3

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce-----E
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV-----H  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v-----~  110 (317)
                      +|.++.+|..+++...+    ......+.+.... .+ ..++.+..+|.+..+|.+++   +.+..........     .
T Consensus       114 ~g~l~ald~~tG~~~W~----~~~~~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~~~~~~~  184 (377)
T TIGR03300       114 KGEVIALDAEDGKELWR----AKLSSEVLSPPLV-AN-GLVVVRTNDGRLTALDAATG---ERLWTYSRVTPALTLRGSA  184 (377)
T ss_pred             CCEEEEEECCCCcEeee----eccCceeecCCEE-EC-CEEEEECCCCeEEEEEcCCC---ceeeEEccCCCceeecCCC
Confidence            67788887766542111    1112222211111 12 36677778999999998876   3333332211111     1


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc----c------e-EEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY----C------V-YNATWNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      +.... + . .++.+..+|.+..+|+++++.+........    .      + ....+  . +..+++++.+|.++.+|.
T Consensus       185 sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~-~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       185 SPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--D-GGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             CCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--E-CCEEEEEEcCCEEEEEEC
Confidence            11122 2 3 677888899999999999987654331100    0      0 01111  1 456778888999999999


Q ss_pred             CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecC
Q 021121          180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       180 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      ++++.+......  .......   .+..+++++.+|.+..+|..+++. +..... ......+...  .+. .+++++.+
T Consensus       259 ~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~  329 (377)
T TIGR03300       259 RSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGG-YLVVGDFE  329 (377)
T ss_pred             CCCcEEEeeccC--CccCceE---eCCEEEEECCCCeEEEEECCCCcE-EEccccccCCccccCEE--ECC-EEEEEeCC
Confidence            998876655421  1112222   345677778899999999988764 333211 1112222222  244 58888999


Q ss_pred             CeEEEEecccccceeeeeecccceeE-eEEEEeccCCeEEEeecCCcEEEE
Q 021121          259 MTVCLWDFMVEDALVGRYDHHTEFAV-GVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       259 ~~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                      |.+.++|..+++ .+..+..+...+. ...+.   ++.|+.++.||.|+.|
T Consensus       330 G~l~~~d~~tG~-~~~~~~~~~~~~~~sp~~~---~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       330 GYLHWLSREDGS-FVARLKTDGSGIASPPVVV---GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEECCCCC-EEEEEEcCCCccccCCEEE---CCEEEEEeCCceEEEe
Confidence            999999998887 4455555543332 33333   3468888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=4e-10  Score=96.00  Aligned_cols=246  Identities=15%  Similarity=0.158  Sum_probs=182.8

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC-----------CCEEEEEcCCC
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR-----------RDSFITSSWDD  129 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg  129 (317)
                      ..-.++.|+|.|  ++|-|+. ..|.+-|...-   +.+..+..|+..|+.+.|.|..           ..+++++.-.|
T Consensus        16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             ccccccccCccc--eEEEecC-ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            336778999987  7888875 46888887654   7788888999999999997632           23677888899


Q ss_pred             EEEEEEcCCCceeEEeeccccceEEEEEecC---CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121          130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPR---HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      .|.+||...+..+..+..+..++..++|-+.   ...++++-.....+.+|+..+|+.............|+.+.|.+.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            9999999999888899999999999999774   2256777777889999999999988887766667788999999888


Q ss_pred             EEEEEecCCcEEEEEccCCCc------cEEEEecCCC-------------------------ceeEEEecCCCCeeEEee
Q 021121          207 LIASASVDKSIKIWDVRNYRV------PIAVLNGHGY-------------------------AVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       207 ~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~-------------------------~v~~~~~~~~~~~~l~~~  255 (317)
                      .+..-+..|.+.+-+.-....      ..+....|..                         ....++|+|.-++.++. 
T Consensus       170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-  248 (1062)
T KOG1912|consen  170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-  248 (1062)
T ss_pred             eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-
Confidence            888877788777776532221      1111112211                         11245778887764443 


Q ss_pred             ecCCeEEEEecccccceeeeeecccceeEeEEEEeccC-CeEEEeecCCcEEEEecCCCC
Q 021121          256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE-GLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .....+.++|++-.. .+....-..+.+.-+.+-|+.. +.|+..-.||.+.+|-....+
T Consensus       249 ~~prellv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  249 TFPRELLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             EeccceEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            346679999988765 4555555566677788888733 378888999999999877644

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.34  E-value=4.1e-10  Score=88.74  Aligned_cols=165  Identities=17%  Similarity=0.201  Sum_probs=113.3

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      .+..+|  .+++++.+..      +....++++....+..+......-...-+++.|..+. .....+..-|.+.-+|+-
T Consensus        67 ~~~~s~--~~~llAv~~~------~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   67 LVLTSD--SGRLVAVATS------SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             ccccCC--CceEEEEEeC------CCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeee
Confidence            345566  5666666653      5566677766554323344444444455566666554 344444444444444443


Q ss_pred             CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeC
Q 021121           92 LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASG  170 (317)
Q Consensus        92 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~  170 (317)
                      .... ......-+|-+.++.++|+||++ +++++..|..|++-.......+..+- +|+.-|..++.-++  ..|++++.
T Consensus       138 s~~~-~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG  213 (390)
T KOG3914|consen  138 SADS-GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG  213 (390)
T ss_pred             cccc-cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence            3211 23344568999999999999997 99999999999998877665555554 69999999999875  56889999


Q ss_pred             CCeEEEEeCCCCCceeeec
Q 021121          171 DCTLRIWDVREMGSTMIIP  189 (317)
Q Consensus       171 dg~i~i~d~~~~~~~~~~~  189 (317)
                      |++|++||+++++.+..+.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999998886653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.31  E-value=8.5e-09  Score=78.28  Aligned_cols=235  Identities=13%  Similarity=0.205  Sum_probs=131.2

Q ss_pred             EEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee--eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEe
Q 021121           13 VKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV--AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDT   90 (317)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~   90 (317)
                      ++.++  +|++++...       |..|.|=..+++-.......  ..+....-+.++|+||+ .+||.+...|+|++||+
T Consensus         3 ~~~~~--~Gk~lAi~q-------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl   72 (282)
T PF15492_consen    3 LALSS--DGKLLAILQ-------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDL   72 (282)
T ss_pred             eeecC--CCcEEEEEe-------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEec
Confidence            34455  788888877       66777766554322111111  11333456789999998 69999999999999998


Q ss_pred             CCCCCC--CCceeec-cCCcceEEEEEecCC-----CCEEEEEcCCCEEEEEEcCCC-----ceeEEee---ccccceEE
Q 021121           91 ALPPTA--NPIRSLH-EHTREVHSADYNPTR-----RDSFITSSWDDTVKLWTVDRP-----TSVRTFK---EHAYCVYN  154 (317)
Q Consensus        91 ~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~---~~~~~v~~  154 (317)
                      ....-.  .+..... .-...|..+.|.+-.     ...|++-..+|.++-|-+..+     +....+.   .+...|.+
T Consensus        73 ~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~  152 (282)
T PF15492_consen   73 MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS  152 (282)
T ss_pred             ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence            743100  0111111 124567777775432     225777777888888876432     2222322   23568999


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-EEEecCC------cEEEEEccCCCc
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-ASASVDK------SIKIWDVRNYRV  227 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~------~i~v~d~~~~~~  227 (317)
                      +.++|. .++|++|+....      +.+.    -+.....+++=..-.....+. ++..+|+      +-.+|.+-+.+.
T Consensus       153 ~vy~p~-h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~  221 (282)
T PF15492_consen  153 AVYHPK-HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKF  221 (282)
T ss_pred             EEEcCC-CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceee
Confidence            999998 566666654322      0000    001111222222111011111 1111111      112333222111


Q ss_pred             cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                       ..........|..|..||+|. +|++...+|.|.+|++.+.+
T Consensus       222 -fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  222 -FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             -eeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcch
Confidence             111122456899999999999 89999999999999998765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=1.6e-08  Score=81.90  Aligned_cols=220  Identities=10%  Similarity=0.081  Sum_probs=125.4

Q ss_pred             CceEEEEecCCCCCcceeeeeecC--------CCCeeEEEecCCCCCeEEEEE-c-CCeEEEEEeCCCCCCCCceeeccC
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDT--------ADGVYDLAWSESHDSLLIAAV-A-DGSVKIYDTALPPTANPIRSLHEH  105 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~v~~~~~~~~~~~~~~~~~~  105 (317)
                      +..|.+||..+...    +.....        ......++++|+|. +|++.. . +..|.+.|+...   +.+..+.- 
T Consensus        76 ~d~V~v~D~~t~~~----~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~---kvv~ei~v-  146 (352)
T TIGR02658        76 TDYVEVIDPQTHLP----IADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGK---AFVRMMDV-  146 (352)
T ss_pred             CCEEEEEECccCcE----EeEEccCCCchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCC---cEEEEEeC-
Confidence            67999999988652    222222        22334789999984 666554 4 789999999876   44444432 


Q ss_pred             CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-----Eeec-----cccceEEEEEecCCCCeEEEEeCCCeEE
Q 021121          106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-----TFKE-----HAYCVYNATWNPRHSDVFCSASGDCTLR  175 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~  175 (317)
                      .....-...+++.   ..+-+.||......+.+.....     .+..     ...+    .|.+.++..+.+... |.|.
T Consensus       147 p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~  218 (352)
T TIGR02658       147 PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIF  218 (352)
T ss_pred             CCCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEE
Confidence            1111112222211   1122334444443332211111     1111     0112    445633666666555 9999


Q ss_pred             EEeCCCCC-----ceeeecc-------CccceEEEEecCCCCcEEEEEe----------cCCcEEEEEccCCCccEEEEe
Q 021121          176 IWDVREMG-----STMIIPA-------HEFEILACDWNKYDDCLIASAS----------VDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       176 i~d~~~~~-----~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      +.|+...+     ....+..       ......-++++| +++.+.+..          ..+.|.++|..+.+. +..+.
T Consensus       219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~  296 (352)
T TIGR02658       219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIE  296 (352)
T ss_pred             EEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEe
Confidence            99965432     2222211       122234499999 666666532          124799999998764 44444


Q ss_pred             cCCCceeEEEecCCCC-eeEEeeecCCeEEEEecccccceeeee
Q 021121          234 GHGYAVRKVKFSPHRR-NLLASCSYDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~  276 (317)
                      . ...+..++++|+++ .++++...++.|.++|..+.+ .+...
T Consensus       297 v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k-~i~~i  338 (352)
T TIGR02658       297 L-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK-ELSSV  338 (352)
T ss_pred             C-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe-EEeee
Confidence            2 34788999999999 544455578889999999887 33444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.30  E-value=2.1e-08  Score=84.15  Aligned_cols=254  Identities=12%  Similarity=0.066  Sum_probs=147.0

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCee-EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVY-DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~  114 (317)
                      +|.|.-+|..+++...+.    .....+. ....  ++ ..+++++.+|.+..+|..++   +.+..... ...+.+...
T Consensus        74 ~g~v~a~d~~tG~~~W~~----~~~~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG---~~~W~~~~-~~~~~~~p~  142 (377)
T TIGR03300        74 DGTVVALDAETGKRLWRV----DLDERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDG---KELWRAKL-SSEVLSPPL  142 (377)
T ss_pred             CCeEEEEEccCCcEeeee----cCCCCcccceEE--cC-CEEEEEcCCCEEEEEECCCC---cEeeeecc-CceeecCCE
Confidence            788998988766532211    1111211 1122  33 47778888999999998766   33333322 122221111


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE-----EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY-----NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP  189 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (317)
                      .. +. .++.++.+|.+..||.++++.+.++........     +....   +..++.+..+|.+..+|.++++.+....
T Consensus       143 v~-~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       143 VA-NG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             EE-CC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            11 23 677788899999999999988777654322111     11111   2467788889999999999987665432


Q ss_pred             cCc----cc---eEEEEecC-CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE
Q 021121          190 AHE----FE---ILACDWNK-YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV  261 (317)
Q Consensus       190 ~~~----~~---v~~i~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  261 (317)
                      ...    ..   ...+.-+| ..+..+++++.+|.++.||.++++. +.... .. .......  .+. .++.++.+|.+
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-~W~~~-~~-~~~~p~~--~~~-~vyv~~~~G~l  291 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-LWKRD-AS-SYQGPAV--DDN-RLYVTDADGVV  291 (377)
T ss_pred             cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-EEeec-cC-CccCceE--eCC-EEEEECCCCeE
Confidence            110    00   00011111 0234677778899999999988764 33332 11 1122222  344 46677889999


Q ss_pred             EEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          262 CLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       262 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ..+|..+++.+................  . +..|++++.+|.|+++|..+.+
T Consensus       292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~-g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       292 VALDRRSGSELWKNDELKYRQLTAPAV--V-GGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             EEEECCCCcEEEccccccCCccccCEE--E-CCEEEEEeCCCEEEEEECCCCC
Confidence            999998887443221111111222222  2 5688889999999999987653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.29  E-value=9.5e-08  Score=75.15  Aligned_cols=222  Identities=14%  Similarity=0.153  Sum_probs=141.8

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec-CCCCCeEEEEEcCCeEEEEEe
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS-ESHDSLLIAAVADGSVKIYDT   90 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~v~~~   90 (317)
                      +..|.+. .+.+..+-..      .+.|+.|+.....     ........ ...+++. +++  .++.+...+ +.++|.
T Consensus         4 gp~~d~~-~g~l~~~D~~------~~~i~~~~~~~~~-----~~~~~~~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~   67 (246)
T PF08450_consen    4 GPVWDPR-DGRLYWVDIP------GGRIYRVDPDTGE-----VEVIDLPG-PNGMAFDRPDG--RLYVADSGG-IAVVDP   67 (246)
T ss_dssp             EEEEETT-TTEEEEEETT------TTEEEEEETTTTE-----EEEEESSS-EEEEEEECTTS--EEEEEETTC-EEEEET
T ss_pred             ceEEECC-CCEEEEEEcC------CCEEEEEECCCCe-----EEEEecCC-CceEEEEccCC--EEEEEEcCc-eEEEec
Confidence            5678885 4666666543      7899999987653     11123333 6777887 554  556665555 666687


Q ss_pred             CCCCCCCCceeec--c-CCcceEEEEEecCCCCEEEEEcCC--------CEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121           91 ALPPTANPIRSLH--E-HTREVHSADYNPTRRDSFITSSWD--------DTVKLWTVDRPTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        91 ~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (317)
                      .++ ..+.+....  . .....+.+++.|+|. +.++....        |.|..++.. ++... +...-...+.++|+|
T Consensus        68 ~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   68 DTG-KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSP  143 (246)
T ss_dssp             TTT-EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEET
T ss_pred             CCC-cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECC
Confidence            664 222222221  1 356788999999998 66665433        668888877 44433 333455689999999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCc-e---eee---ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGS-T---MII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~---~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      ++..++++-+..+.|..+++..... +   ..+   .......-.+++.. ++++.++....+.|.++|.+ ++. +..+
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~-~~~i  220 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKL-LREI  220 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCE-EEEE
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccE-EEEE
Confidence            9444556778889999999874332 1   112   22223477899998 89998888889999999987 453 5555


Q ss_pred             ecCCCceeEEEec-CCCCeeEEeee
Q 021121          233 NGHGYAVRKVKFS-PHRRNLLASCS  256 (317)
Q Consensus       233 ~~~~~~v~~~~~~-~~~~~~l~~~~  256 (317)
                      ......+++++|. |+.+.|++|.+
T Consensus       221 ~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  221 ELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             cCCCCCEEEEEEECCCCCEEEEEeC
Confidence            5444588999994 66666666643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.29  E-value=1.2e-10  Score=91.74  Aligned_cols=154  Identities=14%  Similarity=0.122  Sum_probs=106.6

Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc----eeeeccCccceEEEEecCCCCcEEEEEecCCc---EEEEEccCC
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGS----TMIIPAHEFEILACDWNKYDDCLIASASVDKS---IKIWDVRNY  225 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~---i~v~d~~~~  225 (317)
                      ..+..++. +.+++++..+....+++.+....    ..... -....+++.+.. +......+..-|.   +.+|....+
T Consensus        66 ~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   66 ALVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence            34445555 88888888888877777765433    11111 122233444444 3333333333344   444444432


Q ss_pred             CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcE
Q 021121          226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV  305 (317)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  305 (317)
                        +...+.+|-+.++.++|+||++ +|+++..|..|++-........-...-+|...|..++.-+  +..|+++|.|++|
T Consensus       143 --~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tl  217 (390)
T KOG3914|consen  143 --RCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTL  217 (390)
T ss_pred             --CcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcE
Confidence              3456678999999999999998 7999999999999887776545555668999999999988  4679999999999


Q ss_pred             EEEecCCCC
Q 021121          306 YVWQQGMDP  314 (317)
Q Consensus       306 ~~w~~~~~~  314 (317)
                      ++||+....
T Consensus       218 r~Wd~~sgk  226 (390)
T KOG3914|consen  218 RLWDITSGK  226 (390)
T ss_pred             EEEecccCC
Confidence            999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=4.1e-09  Score=79.04  Aligned_cols=224  Identities=14%  Similarity=0.116  Sum_probs=142.4

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      .|...+|...+.........  .+...|+-+.-.-+...-+..++.|.++++.+++.+.....   .....-.+.+++++
T Consensus        93 ~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~---~h~~~~~~ns~~~s  167 (344)
T KOG4532|consen   93 SGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA---VHNQNLTQNSLHYS  167 (344)
T ss_pred             cceeeeecccCcccceeeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce---eeccccceeeeEEc
Confidence            78999999886653332221  34444433322223334577788899999999876522211   11111338889999


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCc-ee-E-EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-----e
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPT-SV-R-TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-----I  187 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~-~~-~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~  187 (317)
                      ++++ ++++.+....|..|.+.... .+ . .....+..-.+..|+.. ...+|++..||++.|||+|......     +
T Consensus       168 nd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst  245 (344)
T KOG4532|consen  168 NDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISST  245 (344)
T ss_pred             CCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhccc
Confidence            9998 88888888999999887542 22 2 22233445677889887 7899999999999999999875433     2


Q ss_pred             eccCccceEEEEecCCCC-cEEEEEecCCcEEEEEccCCCccEEEE------ecCC-CceeEEEecCCCCeeEEeeecCC
Q 021121          188 IPAHEFEILACDWNKYDD-CLIASASVDKSIKIWDVRNYRVPIAVL------NGHG-YAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~-~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      -+.|.+.++.+.|++... .+|+..-.-+.+.+.|+|+........      ..|. ..|..-.|+.++.. +.+.+.+ 
T Consensus       246 rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~-  323 (344)
T KOG4532|consen  246 RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL-  323 (344)
T ss_pred             CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc-cccccch-
Confidence            245788999999997322 355555556789999999976422221      1122 23667777776664 3333322 


Q ss_pred             eEEEEeccc
Q 021121          260 TVCLWDFMV  268 (317)
Q Consensus       260 ~i~vwd~~~  268 (317)
                      .+.=|++.+
T Consensus       324 ~~ae~ni~s  332 (344)
T KOG4532|consen  324 QGAEYNILS  332 (344)
T ss_pred             hhheeeccc
Confidence            234455443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.28  E-value=6.5e-08  Score=76.07  Aligned_cols=219  Identities=10%  Similarity=0.057  Sum_probs=138.4

Q ss_pred             EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe-cCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121           65 DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN-PTRRDSFITSSWDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        65 ~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~  143 (317)
                      +..|.+....++++-...+.|..|+...+    ....+.. .. ...+++. +++  .++.+...+ +.++|+.+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~~~~-~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEVIDL-PG-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEES-SS-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEEEec-CC-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEE
Confidence            56788844467777777899999997654    2222222 22 6777787 564  455555544 4555998885544


Q ss_pred             Eeec-----cccceEEEEEecCCCCeEEEEeCC--------CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-E
Q 021121          144 TFKE-----HAYCVYNATWNPRHSDVFCSASGD--------CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-A  209 (317)
Q Consensus       144 ~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~  209 (317)
                      ....     ....++.+++.|+ +++.++....        |.|..++.. ++..... ..-...+.++|+| +++.| +
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~-dg~~lyv  150 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSP-DGKTLYV  150 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEET-TSSEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECC-cchheee
Confidence            3332     3467899999999 7777765543        567888876 4433333 2344568999999 77655 5


Q ss_pred             EEecCCcEEEEEccCCCccE---E---EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee
Q 021121          210 SASVDKSIKIWDVRNYRVPI---A---VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA  283 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~~~~---~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v  283 (317)
                      +-+..+.|..|++......+   .   .+....+..-.+++..+|. +.++.-..+.|.+++.+ ++ ++..+.-....+
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~  227 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GK-LLREIELPVPRP  227 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCE
Confidence            66778889999997543211   1   1222223478899999997 66666678899999977 54 455555444578


Q ss_pred             EeEEEE-eccCCeEEEe
Q 021121          284 VGVDMS-VLVEGLLAST  299 (317)
Q Consensus       284 ~~~~~~-~~~~~~l~s~  299 (317)
                      ++++|. ++...+++|.
T Consensus       228 t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  228 TNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEESTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            999995 4423355544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.2e-08  Score=84.30  Aligned_cols=195  Identities=10%  Similarity=-0.023  Sum_probs=118.1

Q ss_pred             ceEEEEEecCCCCEEEE-EcC--CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC--CeEEEEeCCCC
Q 021121          108 EVHSADYNPTRRDSFIT-SSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD--CTLRIWDVREM  182 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~-~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~  182 (317)
                      ......|+|+++..++. ...  +..|.++|+.+++...... ..+......|+|++..++++.+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            77889999999843443 322  4579999998886654433 455566788999955565555544  46888888776


Q ss_pred             CceeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC-
Q 021121          183 GSTMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD-  258 (317)
Q Consensus       183 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-  258 (317)
                      +. ..+..+........|+| +++.|+..+. .+  .|++.|+.+++.  ..+.....  ....|+|+|+.++++.... 
T Consensus       268 ~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        268 TL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK--NNSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             cE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence            53 34443333334568999 7876665553 33  577888876553  22221111  1248999999655555433 


Q ss_pred             -------CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCc--EEEEecCC
Q 021121          259 -------MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL--VYVWQQGM  312 (317)
Q Consensus       259 -------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~~w~~~~  312 (317)
                             ..|.+.|+.+++.  ..+... .......|+|++..++++....+.  +.+.+++.
T Consensus       342 ~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             cccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                   3678888877652  223222 223458899994434444433343  44555544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=4.6e-11  Score=98.07  Aligned_cols=205  Identities=17%  Similarity=0.227  Sum_probs=143.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      +|.+.|+.++--.+ ++-+++++.|.+|++|.++....    ..+..+++.|+.+|.++.|..+.+ ++++  -||-|.+
T Consensus       733 GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~S--cD~giHl  808 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIAS--CDGGIHL  808 (1034)
T ss_pred             CcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeee--ccCccee
Confidence            67777877765544 46899999999999999986432    235667889999999999998765 5554  4789999


Q ss_pred             EEcCCCceeEEeec--cccceEEEEEecC-CCCeEEE-EeCCCeEEEEeCCCCCceeeec-----cCccceEEEEecCCC
Q 021121          134 WTVDRPTSVRTFKE--HAYCVYNATWNPR-HSDVFCS-ASGDCTLRIWDVREMGSTMIIP-----AHEFEILACDWNKYD  204 (317)
Q Consensus       134 wd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~~~~~  204 (317)
                      ||.--++.+..+..  ..+.+..+...++ +..++++ ++...+|+++|.+..+-...++     +...-+++++..+ .
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~  887 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-K  887 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-C
Confidence            99877766553321  1223333333333 2444444 4788999999999887665554     3345588999999 9


Q ss_pred             CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEE-Eeccccc
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL-WDFMVED  270 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~v-wd~~~~~  270 (317)
                      |+.++++-.+|.|.+.|.++++. +.....-......++ .|..+ .|+....|.++.+ |-...+.
T Consensus       888 GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq-~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  888 GNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             cchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhH-HHHhhcccceeEeeehhcCCe
Confidence            99999999999999999999874 444444333333333 24444 5777777888888 8765543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=2e-11  Score=100.18  Aligned_cols=202  Identities=17%  Similarity=0.233  Sum_probs=140.2

Q ss_pred             ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-------ceeEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121           99 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGD  171 (317)
Q Consensus        99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (317)
                      +..+.+|...|..++--.+.+ .+++++.|.+|++|.++..       .+..+++.|+.+|.++.|..+ .+.++  +.|
T Consensus       728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~--ScD  803 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-LRSIA--SCD  803 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-cceee--ecc
Confidence            455778999998886654444 7999999999999998642       466788899999999999987 55654  458


Q ss_pred             CeEEEEeCCCCCceeeecc--CccceEEEEecCC-CCcEE-EEEecCCcEEEEEccCCCccEEEE-----ecCCCceeEE
Q 021121          172 CTLRIWDVREMGSTMIIPA--HEFEILACDWNKY-DDCLI-ASASVDKSIKIWDVRNYRVPIAVL-----NGHGYAVRKV  242 (317)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~-~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~v~~~  242 (317)
                      |.|.+||.--++++..+..  ..+.+..+..-|. +..++ +.++...+++++|.+..+- ...+     .+.+..++++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEE
Confidence            8999999887776654321  1222233333232 33344 4447889999999998653 2222     3445678999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE-Ee
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV-WQ  309 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~-w~  309 (317)
                      +..|.|. .++++-.+|.|.+.|.++++ ++...+..+-....++- |. ++.|+....|.++.+ |.
T Consensus       883 aVa~~GN-~lAa~LSnGci~~LDaR~G~-vINswrpmecdllqlaa-ps-dq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  883 AVADKGN-KLAAALSNGCIAILDARNGK-VINSWRPMECDLLQLAA-PS-DQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             EeccCcc-hhhHHhcCCcEEEEecCCCc-eeccCCcccchhhhhcC-ch-hHHHHhhcccceeEeeeh
Confidence            9999998 69999999999999999987 55555554444444432 32 456666666666666 54

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.22  E-value=6.3e-10  Score=96.40  Aligned_cols=181  Identities=18%  Similarity=0.179  Sum_probs=139.3

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      ..++.|+-...+..+|+.+.   +..+...-..+.|.-++.+  ++ ++.+|...|+|.+-|.++.+.++++..|.+.+.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             cceeecchhhheeeeecccc---eeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcCceeeeeecccccee
Confidence            45666777777888888765   3333333333345555544  44 899999999999999999999999999999999


Q ss_pred             EEEEecCCCCeEEEEeC---------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE---
Q 021121          154 NATWNPRHSDVFCSASG---------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD---  221 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d---  221 (317)
                      .+...   +++|++++.         |..|+|||+|..+.+..+.-+..+ .-+.|+|.-...+++++..|...+-|   
T Consensus       222 DfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  222 DFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            88776   788888875         455899999998877766644444 56788886677888999999999999   


Q ss_pred             ccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      +.+....+......+..+..+.+++++. .++.|..+|.|.+|-
T Consensus       298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence            4444333444555566799999999998 799999999999997

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.20  E-value=1.5e-08  Score=82.60  Aligned_cols=236  Identities=14%  Similarity=0.166  Sum_probs=146.9

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCC-eEEE-----EEcCCeE
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDS-LLIA-----AVADGSV   85 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i   85 (317)
                      -+.|+-  ++.+++-..       ...++|+++. .+-...+...+ ...+|....|+|.++. .|+.     .+..+.+
T Consensus       136 ~~k~s~--~D~y~ARvv-------~~sl~i~e~t-~n~~~~p~~~l-r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~  204 (561)
T COG5354         136 VLKFSI--DDKYVARVV-------GSSLYIHEIT-DNIEEHPFKNL-RPVGILDFSISPEGNHDELAYWTPEKLNKPAMV  204 (561)
T ss_pred             eeeeee--cchhhhhhc-------cCeEEEEecC-CccccCchhhc-cccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence            356666  344443332       3489999973 32112222211 2467899999997432 2332     3557889


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc----------CCCEEEEEEcCCCceeEEeeccccceEEE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS----------WDDTVKLWTVDRPTSVRTFKEHAYCVYNA  155 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  155 (317)
                      ++|.+...   ..+..-.-....=..+.|++.|..+++-.-          ....+.++++..... .......++|...
T Consensus       205 ~i~sIp~~---s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf  280 (561)
T COG5354         205 RILSIPKN---SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDF  280 (561)
T ss_pred             EEEEccCC---CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceee
Confidence            99998754   333222222233356788888873333221          125688888874433 2222568899999


Q ss_pred             EEecCCCCeEEE--EeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEE
Q 021121          156 TWNPRHSDVFCS--ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIA  230 (317)
Q Consensus       156 ~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~  230 (317)
                      +|.|. ++.+++  |..+-.+.++|++.. ....  ..+..=+.+.|+| .+++++.++.|   |.+-+||.........
T Consensus       281 ~W~p~-S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~  355 (561)
T COG5354         281 TWEPL-SSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAG  355 (561)
T ss_pred             eeccc-CCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEE
Confidence            99998 555444  357888999999865 3222  3344556788999 88888887766   5799999887554444


Q ss_pred             EEecCCCceeEEEecCCCCeeEEeee------cCCeEEEEeccccc
Q 021121          231 VLNGHGYAVRKVKFSPHRRNLLASCS------YDMTVCLWDFMVED  270 (317)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~vwd~~~~~  270 (317)
                      .+.+.+  .+-+.|+|+++. +.+..      .|..|+|||+....
T Consensus       356 ~~~~~n--~s~~~wspd~qF-~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         356 AFNGLN--TSYCDWSPDGQF-YDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EeecCC--ceEeeccCCceE-EEecCCCcccccCcceEEEEecCch
Confidence            555543  455789999994 44432      47789999987643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.18  E-value=1.8e-07  Score=71.26  Aligned_cols=228  Identities=11%  Similarity=0.084  Sum_probs=129.4

Q ss_pred             EEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121           66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV  142 (317)
Q Consensus        66 ~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  142 (317)
                      ++.+.+| ++||. -.|..|.|-..+.+ -...+...   +.....=..++|+||+. +||.+...|+|+++|+.. ..+
T Consensus         3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Dd-f~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g-~~l   77 (282)
T PF15492_consen    3 LALSSDG-KLLAI-LQDQCIEIRSAKDD-FSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMG-SEL   77 (282)
T ss_pred             eeecCCC-cEEEE-EeccEEEEEeccCC-chheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEeccc-cee
Confidence            4556677 35554 45677777655432 11111221   22233456799999998 999999999999999975 333


Q ss_pred             EEeec-------cccceEEEEEecCC-----CCeEEEEeCCCeEEEEeCCCC-----Cceeeec---cCccceEEEEecC
Q 021121          143 RTFKE-------HAYCVYNATWNPRH-----SDVFCSASGDCTLRIWDVREM-----GSTMIIP---AHEFEILACDWNK  202 (317)
Q Consensus       143 ~~~~~-------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~---~~~~~v~~i~~~~  202 (317)
                      ..+..       ....|..+.|.+..     ...|++-..+|.++-|-+..+     +....+.   .+...|.++.++|
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            33332       23456777776542     234666777888877765322     1222222   2356899999999


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeE-EeeecCCe------EEEEecccccceeee
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLL-ASCSYDMT------VCLWDFMVEDALVGR  275 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~------i~vwd~~~~~~~~~~  275 (317)
                       ..++|++|+....      ++.   .  -.+....+++-..-.+.+++. ++...|+.      -.+|.+-+.+ ....
T Consensus       158 -~h~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~-~fs~  224 (282)
T PF15492_consen  158 -KHRLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK-FFSR  224 (282)
T ss_pred             -CCCEEEEeccCCC------CCc---c--ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-eeec
Confidence             7677776664332      000   0  011122233322222222222 12222221      1233333222 2222


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .......|..|..||+ +..|++...+|.|.+|++..
T Consensus       225 ~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             cccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCc
Confidence            2334567999999999 89999999999999999864

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=6.9e-09  Score=82.08  Aligned_cols=246  Identities=13%  Similarity=0.075  Sum_probs=144.0

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .+...|..++|+|..+.++..++.+..|+|.|+++.   .....+..+ ..+++++|.-+..+++++|..+|.|.+||++
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            466789999999987668999999999999999875   555566666 8899999999988899999999999999998


Q ss_pred             CCcee-EEeec--cccceEEEEEecCC-----CCeEEEEeCCCeEEEEeCCCC--Cceeeec-cCccceEEEEecCCCCc
Q 021121          138 RPTSV-RTFKE--HAYCVYNATWNPRH-----SDVFCSASGDCTLRIWDVREM--GSTMIIP-AHEFEILACDWNKYDDC  206 (317)
Q Consensus       138 ~~~~~-~~~~~--~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~v~~i~~~~~~~~  206 (317)
                      ..+.. ..+.+  ...+|..++.-+.+     +.+++....+  +..|+....  .....++ ...+...++.+++....
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh  344 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH  344 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence            76432 12211  22344444433221     3334333332  445554321  1222222 23455667777773444


Q ss_pred             EEEEEecCC------cEEE-EEccCCCccEEEEecC-CC------ceeEEEecCCCCeeEEeeecCCeEEEEecccccce
Q 021121          207 LIASASVDK------SIKI-WDVRNYRVPIAVLNGH-GY------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL  272 (317)
Q Consensus       207 ~l~~~~~d~------~i~v-~d~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  272 (317)
                      .+++.-.+.      .|-. -|.+.+.........+ +.      .-..+.-.++...++..++..+.+.+||..+.+ +
T Consensus       345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e-v  423 (463)
T KOG1645|consen  345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE-V  423 (463)
T ss_pred             EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh-e
Confidence            444433211      0111 1111111100111111 00      001122234555456667677889999999886 5


Q ss_pred             eeeeecccceeEeEEEEeccCC-eEEEeecCCcEEEEecCC
Q 021121          273 VGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGM  312 (317)
Q Consensus       273 ~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~  312 (317)
                      ++.+.- ..+|.+++....++. +|++- .|..++||..+.
T Consensus       424 vQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  424 VQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             eeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            556554 378888876654333 55555 466789988654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.14  E-value=2.6e-09  Score=92.70  Aligned_cols=184  Identities=17%  Similarity=0.146  Sum_probs=140.5

Q ss_pred             CEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEE
Q 021121          120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACD  199 (317)
Q Consensus       120 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~  199 (317)
                      ..++.|+....+..+|+++.+..+...-..+.+.-++.+   ++.+.+|...|+|.+-|.++.+.+.++..|.+.+..+.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            367777777888899999888777766555456666654   77898999999999999999999999999999988776


Q ss_pred             ecCCCCcEEEEEec---------CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          200 WNKYDDCLIASASV---------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       200 ~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .   .|++|++++.         |..|+|||+|+.+. +.-+.-+.++ .-+.|+|.-...++.++..|...+-|..+..
T Consensus       225 v---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  225 V---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             c---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence            5   6788888875         45689999998764 3333323322 5578888776678889999999999943322


Q ss_pred             ---ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          271 ---ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       271 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                         .-+.........+.++++++. ++.++-|..+|.|.+|.-..
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSN-GDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCC-CceEEEecccCcEeeecCCC
Confidence               222333344556999999998 89999999999999998433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.13  E-value=1.2e-07  Score=77.02  Aligned_cols=203  Identities=14%  Similarity=0.119  Sum_probs=139.6

Q ss_pred             CceEEEEecCCCCCcceeee-eec----C---CCCeeEEE-ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC
Q 021121           36 NGRVHVLDLSPAAPALTELV-AFD----T---ADGVYDLA-WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHT  106 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~-~~~----~---~~~v~~~~-~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~  106 (317)
                      .|.|++||-.+.......+. ...    .   ..+..-+. |++-...+++..+. |...+.+...+   ..+  --+|.
T Consensus       286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~---~~i--qv~~~  359 (668)
T COG4946         286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG---YSI--QVGKK  359 (668)
T ss_pred             CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC---eeE--EcCCC
Confidence            57899999876652111111 000    0   11112222 44433357777764 66777765432   222  23567


Q ss_pred             cceEEEEEecCCCCEEEEEcCCC-EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121          107 REVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      +.|.-..+..+.. -++.|..|| .+-++|.++++.. .+...-+.|.++..+|+ ++.++++.....+.+.|+.+++..
T Consensus       360 ~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~d-GK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         360 GGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPD-GKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CceEEEEEccCCc-ceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCC-CcEEEEEcCceEEEEEEecCCCee
Confidence            7788888887777 788999999 8999999877654 44556778999999999 898989999999999999999877


Q ss_pred             eeeccCccceEEEEecCCCCcEEEEEecCC----cEEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121          186 MIIPAHEFEILACDWNKYDDCLIASASVDK----SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (317)
                      ..-+....-|+.++|+| +++++|-+--+|    .|++||+...+.  .......+.=.+-+|.|++++
T Consensus       437 ~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki--y~vTT~ta~DfsPaFD~d~ry  502 (668)
T COG4946         437 LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI--YDVTTPTAYDFSPAFDPDGRY  502 (668)
T ss_pred             EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE--EEecCCcccccCcccCCCCcE
Confidence            66666677899999999 999999876554    699999988653  333222333345677888774

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=4.4e-08  Score=80.82  Aligned_cols=235  Identities=17%  Similarity=0.279  Sum_probs=146.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-----------CCEE
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-----------DDTV  131 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v  131 (317)
                      =+-+.|||.| .+|++-...| |.+|--..   ...+..+. | ..|.-+.|||..+ +|++=+.           ...+
T Consensus       213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---f~r~~RF~-H-p~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES---FDRIQRFY-H-PGVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeeEEecCCc-eEEEEEeccc-eeeecCcc---HHHHHhcc-C-CCceeeecCCccc-eEEEecCCccccCcccCCCceE
Confidence            4678999998 6999998887 89997432   23333332 3 3578899999988 8887643           2579


Q ss_pred             EEEEcCCCceeEEeecc--ccce-EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE
Q 021121          132 KLWTVDRPTSVRTFKEH--AYCV-YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI  208 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  208 (317)
                      +|||+.+|...+.+...  ...+ .-+.|+.+ .+++|--.. ..|.||+..+..++-.-.-.-..|....|+| .+++|
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~ll  361 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLL  361 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceE
Confidence            99999999988888752  2223 33579988 788876655 5688888765332221111223455555555 44444


Q ss_pred             EEEecC---------------------------------------------------------CcEEEEEccCCCccEEE
Q 021121          209 ASASVD---------------------------------------------------------KSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       209 ~~~~~d---------------------------------------------------------~~i~v~d~~~~~~~~~~  231 (317)
                      |.-...                                                         ..+.|+.++....++..
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            432110                                                         11233333333333333


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccc-c--ceeeeeecccceeEeEEEEeccCCeEEEee---cCC
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVE-D--ALVGRYDHHTEFAVGVDMSVLVEGLLASTG---WDE  303 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg  303 (317)
                      .. -...|...+|-|.|..+.+..+.+  .++.+|.+++. .  .++..+..  ...+.+.|+|. |++++.+.   ..|
T Consensus       442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk-G~fvvva~l~s~~g  517 (698)
T KOG2314|consen  442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK-GRFVVVAALVSRRG  517 (698)
T ss_pred             ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC-CcEEEEEEeccccc
Confidence            22 245678889999998754444433  56888888742 2  23333333  45788999999 67665544   578


Q ss_pred             cEEEEecCC
Q 021121          304 LVYVWQQGM  312 (317)
Q Consensus       304 ~i~~w~~~~  312 (317)
                      .+.++|++.
T Consensus       518 ~l~F~D~~~  526 (698)
T KOG2314|consen  518 DLEFYDTDY  526 (698)
T ss_pred             ceEEEecch
Confidence            999999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.10  E-value=5.4e-07  Score=70.69  Aligned_cols=227  Identities=14%  Similarity=0.150  Sum_probs=144.7

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCe-EEEEEeCCCCCCCCceeeccCCcce--EEEEEecCCCCEEEEE-----cCCCEEE
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGS-VKIYDTALPPTANPIRSLHEHTREV--HSADYNPTRRDSFITS-----SWDDTVK  132 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~-i~v~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~-----~~dg~v~  132 (317)
                      .....++.+|.....++.+-.-|+ ..+||..++   .....+....+.-  -.-.|+++|+ +|++.     ...|.|-
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g---~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG---QLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIG   80 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC---ceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEE
Confidence            345567888866667777776664 667888766   3332222211111  1247999998 67665     3458999


Q ss_pred             EEEcC-CCceeEEeeccccceEEEEEecCCCCeEEEEe------------------CCCeEEEEeCCCCCceee--e--c
Q 021121          133 LWTVD-RPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS------------------GDCTLRIWDVREMGSTMI--I--P  189 (317)
Q Consensus       133 iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~--~--~  189 (317)
                      |||.. +.+.+.++..+.-....+.+.|+ +..|+++.                  .+-.+...|.++++.+.+  +  .
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            99999 56777888877777888999999 55554432                  123455667777776665  3  2


Q ss_pred             cCccceEEEEecCCCCcEEEEEecCCc-------EEEEEccCCCccEEEE-------ecCCCceeEEEecCCCCeeEEee
Q 021121          190 AHEFEILACDWNKYDDCLIASASVDKS-------IKIWDVRNYRVPIAVL-------NGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      .|...+..+++.+ ++..++..-..|.       +.+++....   +..+       ..-...+-+|++++++..+.+|+
T Consensus       160 ~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  160 LHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             ccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence            3667899999998 7766665544332       334433221   2221       12345788999999998655666


Q ss_pred             ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       256 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                      -..+.+.+||..+++ ++....-  ..+..++-.++  .+++|.+.
T Consensus       236 PrGg~~~~~d~~tg~-~~~~~~l--~D~cGva~~~~--~f~~ssG~  276 (305)
T PF07433_consen  236 PRGGRVAVWDAATGR-LLGSVPL--PDACGVAPTDD--GFLVSSGQ  276 (305)
T ss_pred             CCCCEEEEEECCCCC-Eeecccc--CceeeeeecCC--ceEEeCCC
Confidence            688899999999886 4333332  23556665554  36666654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.5e-09  Score=85.69  Aligned_cols=247  Identities=14%  Similarity=0.111  Sum_probs=169.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-CCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-DDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~  136 (317)
                      -|...|+.+.-...  .++.+++.||.++.|.-..-...+.+..+..|...|.+++.+-++. ++.+.+. |..++++|+
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEe
Confidence            46667777665543  5999999999999998554223355666778999999999999987 8888777 999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCC----CeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEE
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHS----DVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      ++-..+..++. ......+.|....+    .+.++.-.+|.+.++|-....+  ...-.-|..+|.++.++| .+..+++
T Consensus        84 En~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vS  161 (558)
T KOG0882|consen   84 ENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVS  161 (558)
T ss_pred             eccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceee
Confidence            87655433331 11122233332213    2333445688999999876542  233346889999999999 8889999


Q ss_pred             EecCCcEEEEEccC-CCccE-------------EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee--
Q 021121          211 ASVDKSIKIWDVRN-YRVPI-------------AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG--  274 (317)
Q Consensus       211 ~~~d~~i~v~d~~~-~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--  274 (317)
                      ....|.|.-|.... .+.+.             ..+........++.|+|++. -+.+-+.|..|+++++.+++ +++  
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGk-lvqei  239 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGK-LVQEI  239 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccch-hhhhh
Confidence            99999999998873 11111             11122345678999999999 58888899999999998875 111  


Q ss_pred             ------------------------------eeecccc-eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          275 ------------------------------RYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       275 ------------------------------~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                                                    .++.|.. .-+.+.|... +++|+-++-=| |++.++.++
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes-~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES-GNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC-CCEEEeeccee-EEEEEeecC
Confidence                                          1112222 2345677776 77888777666 777777654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=6.8e-10  Score=85.98  Aligned_cols=146  Identities=16%  Similarity=0.266  Sum_probs=110.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCCcceEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHTREVHSAD  113 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~~~v~~~~  113 (317)
                      +-.|-+-++.++-     ...+...+.|.++.|...+ +++..|..+|.|..+|++...+.  .+... --|.+.|+++.
T Consensus       233 sqqv~L~nvetg~-----~qsf~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq  305 (425)
T KOG2695|consen  233 SQQVLLTNVETGH-----QQSFQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQ  305 (425)
T ss_pred             cceeEEEEeeccc-----ccccccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhh
Confidence            5678888887663     3344577889999999876 69999999999999999875322  22222 24899999998


Q ss_pred             EecCCCCEEEEEcCCCEEEEEEcCCCce---eEEeeccccceEEE--EEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121          114 YNPTRRDSFITSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNA--TWNPRHSDVFCSASGDCTLRIWDVREMGSTMII  188 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (317)
                      .......+|++.+.+|.|++||++..++   +..+.+|-..-.-+  ...+. ...+++++.|...++|.++.+..+.++
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccCceeecc
Confidence            8773344899999999999999988777   77787775433322  23444 556778999999999999999888776


Q ss_pred             c
Q 021121          189 P  189 (317)
Q Consensus       189 ~  189 (317)
                      +
T Consensus       385 p  385 (425)
T KOG2695|consen  385 P  385 (425)
T ss_pred             C
Confidence            5

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2e-08  Score=86.29  Aligned_cols=185  Identities=15%  Similarity=0.182  Sum_probs=131.6

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ....+.|++++   ...++.|+.+|.|++++....    + .....|+..      ..+|. ++++|+.||.|.|-.+-+
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCc-eEEEecCCCcEEEeeccC
Confidence            34567788887   258999999999999997632    2 333345444      55677 999999999999999988


Q ss_pred             CceeEEeeccccceEEEEEecC----CCCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          139 PTSVRTFKEHAYCVYNATWNPR----HSDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      .+...++. ...++.+++++|+    ..+.+++|+..| +.++.-+=.  +....+....++|.++.|.   ++++|-++
T Consensus       103 ~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWan  177 (846)
T KOG2066|consen  103 DDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWAN  177 (846)
T ss_pred             CccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEec
Confidence            88777665 5678999999997    456788999988 777653321  1112345567899999994   67888877


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCC------ceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGY------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .+| |++||....+. +..+.....      --..+.|.++.+  |+.| ...+|+|..++.
T Consensus       178 d~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             CCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence            665 99999988654 443332212      234678887765  4444 556789988873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=4.3e-10  Score=87.02  Aligned_cols=142  Identities=16%  Similarity=0.182  Sum_probs=107.7

Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC----CccEEEEecCCCceeE
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY----RVPIAVLNGHGYAVRK  241 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~v~~  241 (317)
                      ++.+.+-.+-+-|+.++-. ..+. ..+.|.++.|.. .++++..|..+|.|..+|+|..    ..+...+ -|.+.|++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence            4566677788889887643 3333 567789999987 8999999999999999999975    2233333 48889999


Q ss_pred             EEecC-CCCeeEEeeecCCeEEEEecccccc--eeeeeecccceeEeEEE--EeccCCeEEEeecCCcEEEEecCCC
Q 021121          242 VKFSP-HRRNLLASCSYDMTVCLWDFMVEDA--LVGRYDHHTEFAVGVDM--SVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       242 ~~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +..-. +++ +|++.+.+|+|++||.+..+.  -+..+.+|...-.-+-+  .+. +..++++|.|...|||.++..
T Consensus       304 lq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  304 LQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccC
Confidence            98877 455 688888999999999987663  25678888654444433  343 558889999999999999854

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.09  E-value=5.1e-07  Score=76.17  Aligned_cols=249  Identities=10%  Similarity=0.010  Sum_probs=141.1

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce-----E
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV-----H  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v-----~  110 (317)
                      +|.++-+|.++++...+..    ....+.+--.- .+ ..++.+..+|.+.-+|.+++   +.+..........     .
T Consensus       129 ~g~l~ald~~tG~~~W~~~----~~~~~~ssP~v-~~-~~v~v~~~~g~l~ald~~tG---~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        129 KGQVYALNAEDGEVAWQTK----VAGEALSRPVV-SD-GLVLVHTSNGMLQALNESDG---AVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEECCCCCCccccc----CCCceecCCEE-EC-CEEEEECCCCEEEEEEccCC---CEeeeecCCCCcccccCCC
Confidence            7889999987766432221    11222111001 12 36667778899999998876   4433332211000     0


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-------ceEEEEEec--CCCCeEEEEeCCCeEEEEeCCC
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-------CVYNATWNP--RHSDVFCSASGDCTLRIWDVRE  181 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~  181 (317)
                      +-...  +. .++.++.+|.+..+|.++++.+........       ....+.-+|  . +..++.++.+|.+..+|..+
T Consensus       200 sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        200 APATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRS  275 (394)
T ss_pred             CCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCC
Confidence            11111  22 567778899999999999877655431110       001111111  1 34566778899999999999


Q ss_pred             CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecCCe
Q 021121          182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMT  260 (317)
Q Consensus       182 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~  260 (317)
                      ++.+......  ....+..   .+..++.++.++.+..+|..+++. +..... ......+....  +. .|+.++.+|.
T Consensus       276 G~~~W~~~~~--~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~  346 (394)
T PRK11138        276 GQIVWKREYG--SVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGY  346 (394)
T ss_pred             CCEEEeecCC--CccCcEE---ECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccCCEEE--CC-EEEEEeCCCE
Confidence            8876554321  1112222   345666777899999999988764 222211 11112222222  33 4778899999


Q ss_pred             EEEEecccccceeeeeecccceeE-eEEEEeccCCeEEEeecCCcEEEEec
Q 021121          261 VCLWDFMVEDALVGRYDHHTEFAV-GVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       261 i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.+.|..+++ .+....-....+. ...+.   +..|+.++.||.|+.+++
T Consensus       347 l~~ld~~tG~-~~~~~~~~~~~~~s~P~~~---~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        347 LHWINREDGR-FVAQQKVDSSGFLSEPVVA---DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEECCCCC-EEEEEEcCCCcceeCCEEE---CCEEEEEeCCceEEEEeC
Confidence            9999999987 3334332222222 22222   457888899999988765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.07  E-value=9.2e-11  Score=97.76  Aligned_cols=205  Identities=19%  Similarity=0.302  Sum_probs=144.7

Q ss_pred             CCCCeeEEEecCCCC-CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc----CCCEEEE
Q 021121           59 TADGVYDLAWSESHD-SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS----WDDTVKL  133 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~v~i  133 (317)
                      ....+.|+++.-+.+ -++++|..+|.|.+-.+..+... ......++....++++|++-..+.|++|-    .|..+.|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            445678888775543 58899999999999988765322 22344578889999999987665677763    3578999


Q ss_pred             EEcCCC--ce--eEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-eeeeccCccceEEEEecCCCCcE
Q 021121          134 WTVDRP--TS--VRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       134 wd~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~  207 (317)
                      ||+.++  .+  ...+.. ......+++|..+ .+++.+|.....+.++|+|.... ...+  ....+..+..+|..+++
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY  210 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence            999876  11  112222 3344668899966 88888999999999999984322 2222  23456678888888888


Q ss_pred             EEEEecCCcEEEEE-ccCCCccEEEEecCC----CceeEEEecCCCCeeEEeeecC-CeEEEEeccc
Q 021121          208 IASASVDKSIKIWD-VRNYRVPIAVLNGHG----YAVRKVKFSPHRRNLLASCSYD-MTVCLWDFMV  268 (317)
Q Consensus       208 l~~~~~d~~i~v~d-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d-~~i~vwd~~~  268 (317)
                      +++-. ||.|.+|| .++.+.++..+....    ..+..++|.|....++++...| ++|+++|+..
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            88765 99999999 666555554433222    2488999999877677777755 6799998764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.06  E-value=1.5e-07  Score=73.62  Aligned_cols=215  Identities=13%  Similarity=0.015  Sum_probs=127.8

Q ss_pred             CCeEEEEEeCCCCCCCCceeeccC--CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEH--TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (317)
                      +|.|..||..++   +.+......  .....+... +++. .+++++.++.|..||..+++.+...... .++..... .
T Consensus         2 ~g~l~~~d~~tG---~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~   74 (238)
T PF13360_consen    2 DGTLSALDPRTG---KELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-V   74 (238)
T ss_dssp             TSEEEEEETTTT---EEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-E
T ss_pred             CCEEEEEECCCC---CEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-e
Confidence            577888887655   444433221  112221122 2344 6778789999999999999988777642 21111111 1


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCceeee-ccCcc---ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGSTMII-PAHEF---EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      . +..+++++.++.++.+|.++++.+... .....   ......... .+..++++..++.|..+|.++++. +......
T Consensus        75 ~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~  151 (238)
T PF13360_consen   75 D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL-LWKYPVG  151 (238)
T ss_dssp             E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE-EEEEESS
T ss_pred             c-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE-EEEeecC
Confidence            2 556667778889999999999988774 32211   111222222 366778888899999999999875 4444433


Q ss_pred             CCc----------e-eEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          236 GYA----------V-RKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       236 ~~~----------v-~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      ...          + ..+.+. ++ . ++.++.++. +.+ |+.+++... ...  ...+..+ .... +..|+.++.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~-~~-~-v~~~~~~g~~~~~-d~~tg~~~w-~~~--~~~~~~~-~~~~-~~~l~~~~~~~  222 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVIS-DG-R-VYVSSGDGRVVAV-DLATGEKLW-SKP--ISGIYSL-PSVD-GGTLYVTSSDG  222 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECC-TT-E-EEEECCTSSEEEE-ETTTTEEEE-EEC--SS-ECEC-EECC-CTEEEEEETTT
T ss_pred             CCCCCcceeeecccccceEEE-CC-E-EEEEcCCCeEEEE-ECCCCCEEE-Eec--CCCccCC-ceee-CCEEEEEeCCC
Confidence            211          1 233333 34 3 555555664 666 999987443 222  2223321 3344 56777777999


Q ss_pred             cEEEEecCCCCC
Q 021121          304 LVYVWQQGMDPR  315 (317)
Q Consensus       304 ~i~~w~~~~~~~  315 (317)
                      .|..||+.+.+.
T Consensus       223 ~l~~~d~~tG~~  234 (238)
T PF13360_consen  223 RLYALDLKTGKV  234 (238)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCCE
Confidence            999999988653

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.2e-08  Score=80.78  Aligned_cols=224  Identities=8%  Similarity=0.067  Sum_probs=136.1

Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      +++.+..+.   +....+..+...|..++|+|....++..++.+..|+|.|+++......+..+ ..+++++|.-++.+.
T Consensus       175 v~~l~~~~f---kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDF---KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCc---chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence            444443332   4444667788899999999988768899999999999999999888888877 779999999998999


Q ss_pred             EEEEeCCCeEEEEeCCCCCcee-eecc--CccceEEEEecCC-----CCcEEEEEecCCcEEEEEccCCC--ccEEEEec
Q 021121          165 FCSASGDCTLRIWDVREMGSTM-IIPA--HEFEILACDWNKY-----DDCLIASASVDKSIKIWDVRNYR--VPIAVLNG  234 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~-~~~~--~~~~v~~i~~~~~-----~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~  234 (317)
                      ++.|...|.|.+||++..+... .+.+  ...+|..++.-+.     .+.+++....+  +..|++....  .+.....+
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele  328 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE  328 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence            9999999999999999764332 2221  2334544443321     23344444332  4556554322  11222223


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCe------EEE-Eecccccceeeeeecc-cce------eEeEEEEeccCCeEEEee
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMT------VCL-WDFMVEDALVGRYDHH-TEF------AVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~------i~v-wd~~~~~~~~~~~~~~-~~~------v~~~~~~~~~~~~l~s~~  300 (317)
                      ..+...++++.+..+++|++.-.+.+      |-. -|..++..+......+ .+.      -..+.-.+++.-++..++
T Consensus       329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd  408 (463)
T KOG1645|consen  329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD  408 (463)
T ss_pred             CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence            45567778888766767776654211      111 1111222222221222 100      011222333223455666


Q ss_pred             cCCcEEEEecCCCC
Q 021121          301 WDELVYVWQQGMDP  314 (317)
Q Consensus       301 ~dg~i~~w~~~~~~  314 (317)
                      ..+.+.+||.....
T Consensus       409 ~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  409 STNELILQDPHSFE  422 (463)
T ss_pred             CcceeEEeccchhh
Confidence            78899999987654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.99  E-value=1e-06  Score=68.98  Aligned_cols=219  Identities=12%  Similarity=0.004  Sum_probs=127.5

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      +|.|..||..+++..... ..........+... +++ ..+++++.++.+..||..++   +.+..... ..++......
T Consensus         2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~~~   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSY-DLGPGIGGPVATAV-PDG-GRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAPVV   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEE-ECSSSCSSEEETEE-EET-TEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGEEE
T ss_pred             CCEEEEEECCCCCEEEEE-ECCCCCCCccceEE-EeC-CEEEEEcCCCEEEEEECCCC---CEEEEeec-cccccceeee
Confidence            678888888766522211 11001122222222 233 46777789999999998776   44444432 1111111122


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccc---cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHA---YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH  191 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  191 (317)
                      . +. .++.++.++.+..+|..+++.+... ....   ........... +..++++..++.|..+|+++++.+......
T Consensus        75 ~-~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   75 D-GG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             E-TT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             c-cc-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence            2 33 5677778889999999999998874 3221   11122222223 667788888999999999999887776543


Q ss_pred             ccc----------e-EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121          192 EFE----------I-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT  260 (317)
Q Consensus       192 ~~~----------v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  260 (317)
                      ...          + ..+.+.  ++ .+..++.++.+..+|+.+++. +....  ...+..+ ..+.+. .|+.++.++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~-~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~  223 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEK-LWSKP--ISGIYSL-PSVDGG-TLYVTSSDGR  223 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEE-EEEEC--SS-ECEC-EECCCT-EEEEEETTTE
T ss_pred             CCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCE-EEEec--CCCccCC-ceeeCC-EEEEEeCCCE
Confidence            322          1 223333  34 566666677544449998774 33322  2233332 334565 4666668999


Q ss_pred             EEEEecccccce
Q 021121          261 VCLWDFMVEDAL  272 (317)
Q Consensus       261 i~vwd~~~~~~~  272 (317)
                      +..||+++++..
T Consensus       224 l~~~d~~tG~~~  235 (238)
T PF13360_consen  224 LYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            999999998743

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2.8e-07  Score=80.04  Aligned_cols=211  Identities=11%  Similarity=0.132  Sum_probs=138.3

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC-----EEEEEEc
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-----TVKLWTV  136 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~  136 (317)
                      .+.|  |++.+ ..++.|+.+|.|.+++-.    .+.+..++.+...+...-+.-++.++|++.+.|+     .+++|++
T Consensus        27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   27 AISC--CSSST-GSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             ceeE--EcCCC-ceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            4443  56666 599999999999888833    3444667777776444445545544788776664     5899998


Q ss_pred             CCC------cee---EEee----ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC---C-CCceeeeccCccceEEEE
Q 021121          137 DRP------TSV---RTFK----EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR---E-MGSTMIIPAHEFEILACD  199 (317)
Q Consensus       137 ~~~------~~~---~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~v~~i~  199 (317)
                      +..      +++   +.+.    ....++.+++.+.+ -+.+++|-.+|.|..+.-.   . +...........+|+.++
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence            643      233   1111    13567889999988 8899999999999988532   1 111222234567899999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      +.. ++..++-...-..|.+|.+.........+..|+..+.|-.+++.... +++++ +..+.+|+....+.+...-.+|
T Consensus       179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCC
Confidence            987 66552222234579999998544234457888889999999987654 44444 3469999988666443333266


Q ss_pred             ccee
Q 021121          280 TEFA  283 (317)
Q Consensus       280 ~~~v  283 (317)
                      ....
T Consensus       256 kk~~  259 (933)
T KOG2114|consen  256 KKEM  259 (933)
T ss_pred             eEEE
Confidence            6543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.98  E-value=1.1e-06  Score=79.26  Aligned_cols=240  Identities=13%  Similarity=0.145  Sum_probs=148.0

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-  137 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-  137 (317)
                      ....|.++.|..+. +.++.+...|.|.+-|..+.    .......-...|.+++|+||+. .++..+..+++.+-+-. 
T Consensus        67 gd~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADT-NSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CCcceEEEEEeccc-ceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccc
Confidence            34579999999887 57888888999999886653    3333334567899999999998 78877777777765421 


Q ss_pred             ---CC-------------------ceeEEeecc---------------------ccceEEEEEecCCCCeEEEE-----e
Q 021121          138 ---RP-------------------TSVRTFKEH---------------------AYCVYNATWNPRHSDVFCSA-----S  169 (317)
Q Consensus       138 ---~~-------------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~~l~~~-----~  169 (317)
                         ..                   +....+++.                     .+.=+++.|--+ +.++++.     .
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFAVSFVESET  219 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEEEEEEeccC
Confidence               00                   111112111                     111245889888 8888873     3


Q ss_pred             CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEE--EEecCCCceeEEEe
Q 021121          170 GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIA--VLNGHGYAVRKVKF  244 (317)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~--~~~~~~~~v~~~~~  244 (317)
                      ....|++||-+ +..-..-.....--.+++|-| .|..+++-.   .|+.|.+|.-+..+.--.  .+......+..++|
T Consensus       220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             CceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence            33789999976 433333333334456899999 898888764   355798998654332111  12223344899999


Q ss_pred             cCCCCeeEEe---eecCCeEEEEeccccccee-eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          245 SPHRRNLLAS---CSYDMTVCLWDFMVEDALV-GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       245 ~~~~~~~l~~---~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +.++. +|++   ......|++|-+.+-.-.+ +.+.-.....  +.|+|.....|..-..+|...++++
T Consensus       298 ns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  298 NSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             cCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            99998 7776   4455559999887654111 1111111111  6677654444444445565555544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.94  E-value=4.5e-06  Score=70.53  Aligned_cols=220  Identities=7%  Similarity=-0.046  Sum_probs=128.2

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE-EEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce-
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS-ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV-  152 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-  152 (317)
                      .++.++.+|.+.-+|.+++   +.+....... .+.+ .... + . .++.+..+|.+..+|.++++.+.......... 
T Consensus       122 ~v~v~~~~g~l~ald~~tG---~~~W~~~~~~-~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDG---EVAWQTKVAG-EALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             EEEEEcCCCEEEEEECCCC---CCcccccCCC-ceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence            6777888999999998877   4444333221 2221 1122 2 3 67778889999999999999887765321100 


Q ss_pred             ----EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc-------ceEEEEecC-CCCcEEEEEecCCcEEEE
Q 021121          153 ----YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF-------EILACDWNK-YDDCLIASASVDKSIKIW  220 (317)
Q Consensus       153 ----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~i~~~~-~~~~~l~~~~~d~~i~v~  220 (317)
                          .+-...   ...++.++.+|.+..+|..+++.+........       ....+..+| ..+..++.++.++.+..+
T Consensus       195 ~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        195 LRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             ccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence                011111   23466778899999999998876655431110       011111122 023456667788999999


Q ss_pred             EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee
Q 021121          221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      |..+++. +..... . ....+..  .+. .++.++.+|.+..+|..+++.+............+....   +..|+.++
T Consensus       272 d~~tG~~-~W~~~~-~-~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~  342 (394)
T PRK11138        272 DLRSGQI-VWKREY-G-SVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGD  342 (394)
T ss_pred             ECCCCCE-EEeecC-C-CccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEe
Confidence            9998764 322221 1 1112222  344 466677899999999988874332211111112222222   45777888


Q ss_pred             cCCcEEEEecCCC
Q 021121          301 WDELVYVWQQGMD  313 (317)
Q Consensus       301 ~dg~i~~w~~~~~  313 (317)
                      .||.|+..|..+.
T Consensus       343 ~~G~l~~ld~~tG  355 (394)
T PRK11138        343 SEGYLHWINREDG  355 (394)
T ss_pred             CCCEEEEEECCCC
Confidence            8898888887654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.94  E-value=1.5e-06  Score=78.47  Aligned_cols=241  Identities=14%  Similarity=0.221  Sum_probs=144.1

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      +.|.++.|.-+ .+.++++..       .|.|.+-|.....  .....  ....+|.+++|+||. ..++..+..+++.+
T Consensus        69 ~~i~s~~fl~d-~~~i~v~~~-------~G~iilvd~et~~--~eivg--~vd~GI~aaswS~De-e~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFLAD-TNSICVITA-------LGDIILVDPETLE--LEIVG--NVDNGISAASWSPDE-ELLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEecc-cceEEEEec-------CCcEEEEcccccc--eeeee--eccCceEEEeecCCC-cEEEEEeCCcEEEE
Confidence            47788888875 556666665       7788888766543  22222  456789999999997 48888877777666


Q ss_pred             EEeCC----C--------CCC--------CCceeecc---------------------CCcceEEEEEecCCCCEEEEE-
Q 021121           88 YDTAL----P--------PTA--------NPIRSLHE---------------------HTREVHSADYNPTRRDSFITS-  125 (317)
Q Consensus        88 ~~~~~----~--------~~~--------~~~~~~~~---------------------~~~~v~~~~~~~~~~~~l~~~-  125 (317)
                      -.-.-    .        ...        +....+.+                     ....=+.+.|.-||. ++++. 
T Consensus       136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~  214 (1265)
T KOG1920|consen  136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSF  214 (1265)
T ss_pred             EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEE
Confidence            43210    0        000        00011111                     011123589999998 77763 


Q ss_pred             ----cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEE---eCCCeEEEEeCCCC---CceeeeccCccce
Q 021121          126 ----SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA---SGDCTLRIWDVREM---GSTMIIPAHEFEI  195 (317)
Q Consensus       126 ----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~---~~~~~~~~~~~~v  195 (317)
                          .....|++||-+ +..-..-....+.=.+++|-|. +..+++-   +.|+.|.+|.-+..   +....++....++
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhcccCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence                333789999977 4443333334445578999998 7777764   34567889885432   2222334444558


Q ss_pred             EEEEecCCCCcEEEE---EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          196 LACDWNKYDDCLIAS---ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      ..++|+. ++..|++   ......|++|-+.+..-.++......... -+.|+|...+-|..-..+|...++++
T Consensus       293 e~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  293 EELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             heeeecC-CCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence            9999998 8888888   55555699999887543222211111111 17777755443443335565555543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.93  E-value=1.5e-07  Score=78.65  Aligned_cols=139  Identities=16%  Similarity=0.268  Sum_probs=98.9

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----cCCe----EEEEEeCCCCCCCCce-eeccCCcc
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----ADGS----VKIYDTALPPTANPIR-SLHEHTRE  108 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~----i~v~~~~~~~~~~~~~-~~~~~~~~  108 (317)
                      ++.++.+...+  ++.+..........++.|+...++.+.+..    .+|.    -.+|++...+ .+.+. +.-.....
T Consensus       185 Nl~L~~~~~~k--lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~  261 (545)
T PF11768_consen  185 NLHLLSCSGGK--LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQ  261 (545)
T ss_pred             cEEEEEecCCc--EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCc
Confidence            56666666553  555555566666788899876556666543    2343    3456665431 12221 12246789


Q ss_pred             eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121          109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG  183 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (317)
                      |.+++++|+.. .++.|+.||.|.+||...+...  +....-.++.++|+|+ +.++++|+..|.+.+||+.-..
T Consensus       262 v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~-gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  262 VICCARSPSED-KLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPD-GAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ceEEecCcccc-eEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCC-CcEEEEEcCCceEEEEEeecCc
Confidence            99999999988 9999999999999998766333  3234566899999999 8999999999999999987543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=3e-07  Score=79.95  Aligned_cols=113  Identities=18%  Similarity=0.243  Sum_probs=81.6

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEe
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDT   90 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~   90 (317)
                      +-.+|+|. ...|+++.-.   ..+.|.|.||--.. ++....    ..+-.+++++|+|.. ..|+.|-.-|.+.+|..
T Consensus        19 ti~SWHPs-ePlfAVA~fS---~er~GSVtIfadtG-EPqr~V----t~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   19 TISSWHPS-EPLFAVASFS---PERGGSVTIFADTG-EPQRDV----TYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             cccccCCC-CceeEEEEec---CCCCceEEEEecCC-CCCccc----ccceehhhhccChHH-HHHhhccccceeEEEec
Confidence            34679996 4555555432   12368899885433 222211    122346779999985 68999999999999997


Q ss_pred             CCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           91 ALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ...   +.-.....|..+|..+.|+++|. .++++..-|.|.+|...
T Consensus        89 ~~~---e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   89 NTT---ETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCc---eeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            654   33344457999999999999998 99999999999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.90  E-value=7.7e-08  Score=80.33  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=92.2

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCc--eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNG--RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      +.....+.++.||-..+..+.+.... ....++-  .-.+|++...+.....+.....+..|.+++++|+. ..++.|+.
T Consensus       202 irTE~dPl~~~Fs~~~~~qi~tVE~s-~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~  279 (545)
T PF11768_consen  202 IRTENDPLDVEFSLNQPYQIHTVEQS-ISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCE  279 (545)
T ss_pred             EEecCCcEEEEccCCCCcEEEEEEEe-cCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEec
Confidence            44556667888887545555544322 1111111  23678887665445566677889999999999997 59999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP  139 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  139 (317)
                      ||.|.+||...+     ........-..+.++|+|+|. ++++|+..|.+.+||+.-.
T Consensus       280 DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  280 DGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence            999999998643     222333455678899999998 9999999999999998644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=2.6e-07  Score=80.22  Aligned_cols=196  Identities=12%  Similarity=0.121  Sum_probs=130.5

Q ss_pred             EEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-----eEEEEeCCCCC----
Q 021121          113 DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-----TLRIWDVREMG----  183 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~----  183 (317)
                      +|++.+. .++.|+.+|.|.+++- .-+.++.++.+...+...-+.-+..++|++.+.|+     .+++||++..+    
T Consensus        30 c~~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTG-SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCc-eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3566666 8999999999988873 23444677776666333333334356777777665     48999997541    


Q ss_pred             c--e---eee----ccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc---CCCccEEEEecCCCceeEEEecCCCCee
Q 021121          184 S--T---MII----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR---NYRVPIAVLNGHGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       184 ~--~---~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (317)
                      +  .   +.+    +....++.+++.+. +-+.+|+|-.+|.|..+.=.   ..............+|+.+++..+++..
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence            1  1   111    12356788999998 88999999999999988421   1111122233456799999999998863


Q ss_pred             EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       252 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +.++. -..|.+|.+....+....+..|+..+.+-.+++. ...++.++ +..+.+|+.+...
T Consensus       187 lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~-t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  187 LFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG-TYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             EEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCC-CccEEEec-CceEEEEcCCCcc
Confidence            44333 4569999998554445568888889999999986 33355444 3558888876543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.89  E-value=1.2e-05  Score=63.38  Aligned_cols=234  Identities=15%  Similarity=0.136  Sum_probs=142.1

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-----
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-----   81 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----   81 (317)
                      +.....++.+|. ....++..-..     .--..+||...... ...+..-....---.-.|++||. +|++.-.     
T Consensus         4 P~RgH~~a~~p~-~~~avafaRRP-----G~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g   75 (305)
T PF07433_consen    4 PARGHGVAAHPT-RPEAVAFARRP-----GTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETG   75 (305)
T ss_pred             CccccceeeCCC-CCeEEEEEeCC-----CcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCC
Confidence            456678899995 23333333321     33578899877652 11111111111112467999995 6666533     


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc------------------CCCEEEEEEcCCCceeE
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS------------------WDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~  143 (317)
                      .|.|-|||..  .....+..+..|.-.-..+.+.|+++ .|+++.                  .+-.+...|..+++.+.
T Consensus        76 ~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~  152 (305)
T PF07433_consen   76 RGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE  152 (305)
T ss_pred             cEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence            4899999988  24566777777777777888999997 455441                  23456667777887776


Q ss_pred             Eee----ccccceEEEEEecCCCCeEEEEeCCCe-------EEEEeCCCCCceeeec-------cCccceEEEEecCCCC
Q 021121          144 TFK----EHAYCVYNATWNPRHSDVFCSASGDCT-------LRIWDVREMGSTMIIP-------AHEFEILACDWNKYDD  205 (317)
Q Consensus       144 ~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~  205 (317)
                      +..    .|...+..+++.++ +..++..-..|.       |-+++.  ++.+..+.       .....+-+|++++ ++
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g  228 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DG  228 (305)
T ss_pred             eeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CC
Confidence            633    36678999999988 655544433332       333332  22222222       3446789999998 76


Q ss_pred             cEE-EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE
Q 021121          206 CLI-ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV  261 (317)
Q Consensus       206 ~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  261 (317)
                      ..+ +++-..+.+.+||..+++. +....-  ..+..++-.+++  ++++.+. |.+
T Consensus       229 ~~ia~tsPrGg~~~~~d~~tg~~-~~~~~l--~D~cGva~~~~~--f~~ssG~-G~~  279 (305)
T PF07433_consen  229 RLIAVTSPRGGRVAVWDAATGRL-LGSVPL--PDACGVAPTDDG--FLVSSGQ-GQL  279 (305)
T ss_pred             CEEEEECCCCCEEEEEECCCCCE-eecccc--CceeeeeecCCc--eEEeCCC-ccE
Confidence            655 5556778899999998763 333222  245566666665  5666554 443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.7e-08  Score=79.96  Aligned_cols=204  Identities=15%  Similarity=0.125  Sum_probs=144.2

Q ss_pred             CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---CceeEEeeccccceEEEEEecCCCCeEEEEeC-CCeEEEEeCC
Q 021121          105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR---PTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCTLRIWDVR  180 (317)
Q Consensus       105 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~  180 (317)
                      |...|+.+.....  .++++++.||.++.|.-..   -+.+..+..|...+.+++.+.+ +.++.+.+. |..++++|+.
T Consensus         8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEee
Confidence            6777777655533  3899999999999997543   1345556778899999999988 888888777 9999999998


Q ss_pred             CCCceeeeccCccceEEEEecCCCC----cEEEEEecCCcEEEEEccCCCcc-EEEEecCCCceeEEEecCCCCeeEEee
Q 021121          181 EMGSTMIIPAHEFEILACDWNKYDD----CLIASASVDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       181 ~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      +-..+..++...- ...+.|....+    .+-++.-.++.+.++|-+...++ ...-.-|..+|.++.++|-+. .+++.
T Consensus        85 n~DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSi  162 (558)
T KOG0882|consen   85 NFDMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSI  162 (558)
T ss_pred             ccchhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeec
Confidence            7655433332111 12223322122    22333346789999998876533 344456899999999999998 58888


Q ss_pred             ecCCeEEEEecccc----c-ce---------eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          256 SYDMTVCLWDFMVE----D-AL---------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       256 ~~d~~i~vwd~~~~----~-~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ...|.|.-|.....    + .+         +..+........++.|+|+ +..+.+-+.|..|+++++.++.
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccch
Confidence            88899999987631    1 01         1112223456789999999 8899999999999999988753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=1.1e-07  Score=81.87  Aligned_cols=185  Identities=14%  Similarity=0.076  Sum_probs=129.2

Q ss_pred             CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121          106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      ...+.|++++  +. .++-|+.+|.|++++.....  .+...|...      .- .+.++++|+.||+|.|..+-+.+..
T Consensus        39 ~D~is~~av~--~~-~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DK-FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cc-eeeeccccceEEEEecCCcc--ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccc
Confidence            4556777776  23 89999999999999986443  333334443      33 3899999999999999999888777


Q ss_pred             eeeccCccceEEEEecCC----CCcEEEEEecCCcEEEEEccCCCccE-EEEecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121          186 MIIPAHEFEILACDWNKY----DDCLIASASVDKSIKIWDVRNYRVPI-AVLNGHGYAVRKVKFSPHRRNLLASCSYDMT  260 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  260 (317)
                      .++. ...++.+++++|.    ..+.+++|+..| +.++.-+-..... ..+....++|.++.|.  |. ++|-++.+| 
T Consensus       107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~-lIAWand~G-  180 (846)
T KOG2066|consen  107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN-LIAWANDDG-  180 (846)
T ss_pred             eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc-EEEEecCCC-
Confidence            7665 5678999999993    256889999888 7777654322211 2345567899999996  44 788777666 


Q ss_pred             EEEEecccccceeeeeecc-----cceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          261 VCLWDFMVEDALVGRYDHH-----TEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       261 i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      |+|||+.+.+.+......+     ...-..+.|.+.  ..|+.| +..+|++..+.
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEe-cCCeEEEEEEe
Confidence            9999998877443322222     123456788874  455555 55668888876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.85  E-value=8.3e-10  Score=92.24  Aligned_cols=203  Identities=16%  Similarity=0.233  Sum_probs=139.9

Q ss_pred             CcceEEEEEecCCC-CEEEEEcCCCEEEEEEcCCCcee--EEeeccccceEEEEEecCCCCeEEEEe----CCCeEEEEe
Q 021121          106 TREVHSADYNPTRR-DSFITSSWDDTVKLWTVDRPTSV--RTFKEHAYCVYNATWNPRHSDVFCSAS----GDCTLRIWD  178 (317)
Q Consensus       106 ~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d  178 (317)
                      ...+.|++++-+.. .++++|..+|.|.+-.++...-.  ....++..+.++++|++-+.+.|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566777654332 48889999999999888765332  334567788999999998778887763    356799999


Q ss_pred             CCCC--Ccee--eecc-CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEE
Q 021121          179 VREM--GSTM--IIPA-HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       179 ~~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  253 (317)
                      +.++  .+..  .+.. ......+++|.. +.+++.+|.....+.++|+|........  -....+..+..+|-...+++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCcee
Confidence            9876  2211  1221 334456889986 8899999999999999999954321222  23345677888885544676


Q ss_pred             eeecCCeEEEEe-cccccceeeeeeccc----ceeEeEEEEeccCCeEEEeec-CCcEEEEecCC
Q 021121          254 SCSYDMTVCLWD-FMVEDALVGRYDHHT----EFAVGVDMSVLVEGLLASTGW-DELVYVWQQGM  312 (317)
Q Consensus       254 ~~~~d~~i~vwd-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~  312 (317)
                      +.. ||.|.+|| .++-+.++..+...+    ..+..++|+|....++++... .++|+++++..
T Consensus       213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            555 99999999 444443333333222    248999999987668887774 57899998864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.3e-08  Score=54.73  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=34.9

Q ss_pred             eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      ++..+.+|...|++++|+|+ +.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            56789999999999999999 89999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.6e-08  Score=54.34  Aligned_cols=38  Identities=37%  Similarity=0.833  Sum_probs=35.8

Q ss_pred             ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121          140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD  178 (317)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (317)
                      +++..+++|..+|++++|+|+ +.++++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            567889999999999999999 99999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=4.6e-09  Score=91.18  Aligned_cols=196  Identities=17%  Similarity=0.263  Sum_probs=136.4

Q ss_pred             CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-eEE
Q 021121           97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-TLR  175 (317)
Q Consensus        97 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~  175 (317)
                      +....+..|....+|++|+-+.+ .|+.|+..|.|+++++.+|.......+|.++++-+.=+.++..+|.+++... ...
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            45566778899999999998877 9999999999999999999999999999999999998888444443333333 467


Q ss_pred             EEeCCC-CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---CCCceeEEEecCCCCee
Q 021121          176 IWDVRE-MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       176 i~d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  251 (317)
                      +|++.+ +....++.    .-.++.|+. ....-+.|+......+||+++...+...+.+   .+..-++..|+|+.. +
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-L 1244 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-e
Confidence            899864 23333443    235788887 4555555666677999999987653332322   223347889999998 4


Q ss_pred             EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       252 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +.   .||  .+||++..+ .+..+......+ .=.|+|. +..++.-+     -|||+.+
T Consensus      1245 Il---ndG--vLWDvR~~~-aIh~FD~ft~~~-~G~FHP~-g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPE-AIHRFDQFTDYG-GGGFHPS-GNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             Ee---eCc--eeeeeccHH-HHhhhhhheecc-cccccCC-CceEEeec-----hhhhhHH
Confidence            54   466  479999875 455555544222 2358888 55555544     3677654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.80  E-value=1.6e-05  Score=65.96  Aligned_cols=256  Identities=9%  Similarity=0.096  Sum_probs=134.5

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-------C---
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-------H---  105 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-------~---  105 (317)
                      .+.+.+||+++..  ...+..  ....+....|+|+| +.++... ++.|.+.+...+. ...+ +..+       -   
T Consensus        22 ~~~y~i~d~~~~~--~~~l~~--~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~-~~~l-T~dg~~~i~nG~~dw   93 (353)
T PF00930_consen   22 KGDYYIYDIETGE--ITPLTP--PPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQ-ETQL-TTDGEPGIYNGVPDW   93 (353)
T ss_dssp             EEEEEEEETTTTE--EEESS---EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSE-EEES-ES--TTTEEESB--H
T ss_pred             ceeEEEEecCCCc--eEECcC--CccccccceeecCC-CeeEEEe-cCceEEEECCCCC-eEEe-ccccceeEEcCccce
Confidence            5689999998854  222221  25678899999998 4666664 5789998875441 0101 1111       0   


Q ss_pred             ------CcceEEEEEecCCCCEEEEEcC-CC-----------------------------------EEEEEEcCCCceeE
Q 021121          106 ------TREVHSADYNPTRRDSFITSSW-DD-----------------------------------TVKLWTVDRPTSVR  143 (317)
Q Consensus       106 ------~~~v~~~~~~~~~~~~l~~~~~-dg-----------------------------------~v~iwd~~~~~~~~  143 (317)
                            -+.-..+.|+||++ .|+.... +.                                   .+.++|+.+++...
T Consensus        94 vyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~  172 (353)
T PF00930_consen   94 VYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE  172 (353)
T ss_dssp             HHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCE
T ss_pred             eccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEE
Confidence                  11235688999998 5554322 21                                   23344554443321


Q ss_pred             E-e----eccccceEEEEEecCCCC-eEEE-EeCC---CeEEEEeCCCCCceeeecc-Cccc---eEEEEec-CCCCcEE
Q 021121          144 T-F----KEHAYCVYNATWNPRHSD-VFCS-ASGD---CTLRIWDVREMGSTMIIPA-HEFE---ILACDWN-KYDDCLI  208 (317)
Q Consensus       144 ~-~----~~~~~~v~~~~~~~~~~~-~l~~-~~~d---g~i~i~d~~~~~~~~~~~~-~~~~---v~~i~~~-~~~~~~l  208 (317)
                      . .    .....-+..+.|.++ +. +++. ...+   ..+.++|..+++....... ....   -....+. +.+..++
T Consensus       173 ~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l  251 (353)
T PF00930_consen  173 LDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL  251 (353)
T ss_dssp             E---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred             eeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence            1 1    123446788999998 55 3333 3333   2467778877655433321 1111   1244443 5466677


Q ss_pred             EEEecCCcEEEEEccCCCccEEEEecCCCceeE-EEecCCCCeeEEeeecCC--eEEEEecccc-cceeeeeecccceeE
Q 021121          209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK-VKFSPHRRNLLASCSYDM--TVCLWDFMVE-DALVGRYDHHTEFAV  284 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~--~i~vwd~~~~-~~~~~~~~~~~~~v~  284 (317)
                      .....+|.-++|-+.........+....-.|.. +.++++++.+.+++..++  .-.+|.+... ......+......-.
T Consensus       252 ~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~  331 (353)
T PF00930_consen  252 WISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHY  331 (353)
T ss_dssp             EEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred             EEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence            777777765555444333334555555556744 778888886666666532  3344443333 222334443333226


Q ss_pred             eEEEEeccCCeEEEeec
Q 021121          285 GVDMSVLVEGLLASTGW  301 (317)
Q Consensus       285 ~~~~~~~~~~~l~s~~~  301 (317)
                      .+.|||++..++.+++.
T Consensus       332 ~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  332 SASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEEE-TTSSEEEEEEES
T ss_pred             EEEECCCCCEEEEEEcC
Confidence            89999994445555553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.77  E-value=7.3e-06  Score=70.08  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=89.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---ccCCcceEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---HEHTREVHSA  112 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~~~~v~~~  112 (317)
                      .|.+++|+-..+.  ............+..+..+++. .++|+|+..|.|.++-+...........-   +.|+..|+++
T Consensus        54 ~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal  130 (726)
T KOG3621|consen   54 AGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL  130 (726)
T ss_pred             cceEEEEecCchh--hhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence            7899999987654  2222222234445566677775 79999999999999988764222222111   2378899999


Q ss_pred             EEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC
Q 021121          113 DYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE  181 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (317)
                      +|++++. .+++|...|.|..-.+...    ...+.+-...++|..+....  ..+|++....  ..+++++.
T Consensus       131 ~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~  198 (726)
T KOG3621|consen  131 EWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEA  198 (726)
T ss_pred             Eeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecch
Confidence            9999998 9999999999999888762    11222333456777777763  3444443332  23555544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=7.7e-09  Score=89.84  Aligned_cols=190  Identities=16%  Similarity=0.188  Sum_probs=134.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC-EEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~  136 (317)
                      ++....+|++|+-.. +.|++|+..|.|++|++.++   .......+|.++|+-+.-+.+|...|.+++... -..+|++
T Consensus      1099 d~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             ccccceeeEEeecCC-ceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            577889999999875 69999999999999999987   667778899999999999999984555544444 4678998


Q ss_pred             CC-CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec----cCccceEEEEecCCCCcEEEEE
Q 021121          137 DR-PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP----AHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       137 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      .+ +...+.+.    .-.++.|+.. ...-+.|+......+||++++.++.++-    +....-++..|+| ...+++  
T Consensus      1175 ~s~~~~~Hsf~----ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl-- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL-- 1246 (1516)
T ss_pred             ccccCcccccc----ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe--
Confidence            65 33444443    2456777765 4444456666678999999987776632    1222337788999 666665  


Q ss_pred             ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                       .||  .+||.|..+ .++.+......+ .-.|+|.|.. ++.-+     .|||+++-+
T Consensus      1247 -ndG--vLWDvR~~~-aIh~FD~ft~~~-~G~FHP~g~e-VIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPE-AIHRFDQFTDYG-GGGFHPSGNE-VIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             -eCc--eeeeeccHH-HHhhhhhheecc-cccccCCCce-EEeec-----hhhhhHHHH
Confidence             355  489999864 466655444222 3469999986 44333     589999865

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.1e-06  Score=76.46  Aligned_cols=110  Identities=15%  Similarity=0.234  Sum_probs=83.8

Q ss_pred             eeEEEecCCCCCeEEEEEc----CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           63 VYDLAWSESHDSLLIAAVA----DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~----dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      -+-..|+|..+ ++++++.    .|.|.||- +++   ++..... ..-.+++++|+|..- .|+.|-.-|.+.+|...+
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtG---EPqr~Vt-~P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTG---EPQRDVT-YPVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCC---CCCcccc-cceehhhhccChHHH-HHhhccccceeEEEecCC
Confidence            34457999874 7777764    58899985 223   3332221 122356699999876 888888889999999887


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      .+.-.....|+.++..+.|+|+ +..++++..-|.+.+|...
T Consensus        91 ~e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence            7766666679999999999999 8899999999999999876

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.69  E-value=6.2e-06  Score=69.33  Aligned_cols=191  Identities=15%  Similarity=0.176  Sum_probs=114.9

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcC---CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCE--EEE
Q 021121           59 TADGVYDLAWSESHDSLLIAAVAD---GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT--VKL  133 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i  133 (317)
                      ....+..-+|+|++..+....-..   ..+.+++++.+.. ..+..+.   +.-..-+|+|||+.++++...||.  |.+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccC---CccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            344577778999986544443222   3588889887622 2222233   333446899999977888888886  555


Q ss_pred             EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE
Q 021121          134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      +|+.+++ ...+....+.-..=.|+|++..++++.+..|.  |.++|.+.... ..+......-..-.|+| ++++++..
T Consensus       267 ~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp-dG~~i~~~  343 (425)
T COG0823         267 MDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP-DGDKIVFE  343 (425)
T ss_pred             EcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC-CCCEEEEE
Confidence            5776655 33354444444467899996666666666676  55566655444 33332222223778999 88888877


Q ss_pred             ecC-Cc--EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121          212 SVD-KS--IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       212 ~~d-~~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      +.. |.  |.+.|+.+... ...+ ........-.|.|+++.++.+++.-
T Consensus       344 ~~~~g~~~i~~~~~~~~~~-~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         344 SSSGGQWDIDKNDLASGGK-IRIL-TSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             eccCCceeeEEeccCCCCc-EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence            643 43  66666665543 2222 2333445667888888655444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=3.6e-05  Score=65.07  Aligned_cols=222  Identities=14%  Similarity=0.117  Sum_probs=119.3

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ..-....+.++|++ +.+++ +.+|.-.++....      .+.  ...+......|.+.+  .+++-...+.|.++.--+
T Consensus        31 ~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~------~r~--k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   31 CEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA------WRN--KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             -SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT------TEE--EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTE
T ss_pred             CCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC------Ccc--cccCceeEEEEecCc--cEEEEECCCeEEEEEcCc
Confidence            34457899999998 46666 5578888888321      111  123455667898854  577777788999963222


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEE
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK  218 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  218 (317)
                      .+..+.++.. ..+..+-.    |.+|...+.+ .|.+||..+++.+..+...  +|..+.|++ ++.+++..+.+ .+.
T Consensus        99 ~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i~  168 (443)
T PF04053_consen   99 NEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-SIY  168 (443)
T ss_dssp             E-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEE
T ss_pred             cccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eEE
Confidence            2332333322 22444432    5666666544 8999999999999888743  489999999 89999888755 677


Q ss_pred             EEEccCC----------CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEE
Q 021121          219 IWDVRNY----------RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       219 v~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  288 (317)
                      +++....          +........-...|.+.+|..+  -++.+...  .++-  +..++  ...+..-..+++=+..
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~Ge--~~~i~~ld~~~yllgy  240 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVNGE--TGIIAHLDKPLYLLGY  240 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EETTE--EEEEEE-SS--EEEEE
T ss_pred             EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEcCC--cceEEEcCCceEEEEE
Confidence            7765432          0123444433568899999866  35555443  6776  44444  1223333456676777


Q ss_pred             EeccCCeEEEeecCCcEEEEecC
Q 021121          289 SVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       289 ~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      .+. .+.+.....|+.+..+.++
T Consensus       241 ~~~-~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  241 LPK-ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             ETT-TTEEEEE-TT--EEEEE--
T ss_pred             Ecc-CCEEEEEECCCCEEEEEEC
Confidence            775 5788888889988888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.64  E-value=2.6e-05  Score=64.96  Aligned_cols=233  Identities=9%  Similarity=0.074  Sum_probs=127.6

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC----------------------------------------Ccee
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN----------------------------------------PIRS  101 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~----------------------------------------~~~~  101 (317)
                      .|+.+.|+++. .-|++|...|.|-+|.+...+...                                        +...
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            47889999986 589999999999999765431110                                        1111


Q ss_pred             eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--c------cccceEEEEEec----CCC---CeEE
Q 021121          102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--E------HAYCVYNATWNP----RHS---DVFC  166 (317)
Q Consensus       102 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~----~~~---~~l~  166 (317)
                      ++...++|++++.+.-|  +++.|..+|.+.|.|++....+..-.  .      ....++++.|..    +++   -+++
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            23346889999998665  89999999999999998877666532  1      234577888862    112   3688


Q ss_pred             EEeCCCeEEEEeCCC-C--Cce----eeeccCccceEEEE-ecCC--------------------CCcEEEEEecCCcEE
Q 021121          167 SASGDCTLRIWDVRE-M--GST----MIIPAHEFEILACD-WNKY--------------------DDCLIASASVDKSIK  218 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~-~--~~~----~~~~~~~~~v~~i~-~~~~--------------------~~~~l~~~~~d~~i~  218 (317)
                      +|+..|.+.+|.+.- .  .-.    .....+..++..+. ++..                    ...+++++ .+..++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ir  238 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIR  238 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceE
Confidence            899999999998751 1  111    11113445555444 2111                    11244444 467899


Q ss_pred             EEEccCCCccEEEEecCCCceeEEEecC----CCCeeEEeeecCCeEEEEecccccceeeeee---cccceeEeEEEEec
Q 021121          219 IWDVRNYRVPIAVLNGHGYAVRKVKFSP----HRRNLLASCSYDMTVCLWDFMVEDALVGRYD---HHTEFAVGVDMSVL  291 (317)
Q Consensus       219 v~d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~  291 (317)
                      ++...+.+...+.+ ........+.+-+    .+...|++-..+|.|+++.+...+++....-   .....+...+++++
T Consensus       239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~  317 (395)
T PF08596_consen  239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN  317 (395)
T ss_dssp             EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred             EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence            99998876534444 2323344455532    2333688888999999999988774432211   12234556777887


Q ss_pred             cCCeEEEee
Q 021121          292 VEGLLASTG  300 (317)
Q Consensus       292 ~~~~l~s~~  300 (317)
                       |+.++-.+
T Consensus       318 -Gdi~~~~g  325 (395)
T PF08596_consen  318 -GDIFYWTG  325 (395)
T ss_dssp             -S-EEEE-S
T ss_pred             -CCEEEEeC
Confidence             56555554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.59  E-value=2.4e-05  Score=69.88  Aligned_cols=139  Identities=18%  Similarity=0.190  Sum_probs=98.2

Q ss_pred             EEEE-EcCCCEEEEEEcCCCceeEEeeccccc-eEEEEEecC------CCCeEEEEeCCCeEEEEeCCCCCc-eee--e-
Q 021121          121 SFIT-SSWDDTVKLWTVDRPTSVRTFKEHAYC-VYNATWNPR------HSDVFCSASGDCTLRIWDVREMGS-TMI--I-  188 (317)
Q Consensus       121 ~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~-~~~--~-  188 (317)
                      +|+. ......|+-.|++.|+.+..+..+... |..+  .|+      ...-.+.|-.+..+..||+|-... +..  . 
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            4443 345688999999999999999877653 4444  342      123345788888999999996531 111  1 


Q ss_pred             -ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          189 -PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       189 -~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                       ........|++-+.  ..+||+|+.+|.||+||- .+......+.+-+.+|..|..+.+|+.+|+|+  +..+.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecC--CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence             12344577787764  448999999999999994 33444566777889999999999999666555  567778775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.58  E-value=0.00013  Score=55.41  Aligned_cols=101  Identities=12%  Similarity=0.004  Sum_probs=64.7

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEE-EEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHS-ADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~  114 (317)
                      .+.+.-.|...++...+.+    -...|.+-+.- -| .+++.|...|.+.+.+.+++   .....+... +.|.+ ...
T Consensus        32 s~~~~avd~~sG~~~We~i----lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tG---s~~w~f~~~-~~vk~~a~~  101 (354)
T KOG4649|consen   32 SGIVIAVDPQSGNLIWEAI----LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTG---SQIWNFVIL-ETVKVRAQC  101 (354)
T ss_pred             CceEEEecCCCCcEEeehh----hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecch---hheeeeeeh-hhhccceEE
Confidence            6777777777665322222    12223332222 24 47999999999999999887   344333321 22222 234


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE  147 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  147 (317)
                      .+++. ++..|+.|+..+..|.++..++.+.+.
T Consensus       102 d~~~g-lIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  102 DFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             cCCCc-eEEEecCCCcEEEecccccceEEeccc
Confidence            56666 899999999999999998877776653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.57  E-value=3.1e-05  Score=66.79  Aligned_cols=175  Identities=11%  Similarity=0.000  Sum_probs=109.3

Q ss_pred             cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---C-CeEEEEeCCCCCceeeeccCccceEEEEec
Q 021121          126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---D-CTLRIWDVREMGSTMIIPAHEFEILACDWN  201 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~  201 (317)
                      -..+.+.+.|.++.+...++.-. +....++++|+ +.++++.+.   . .++...+.........+....  +  .++.
T Consensus       212 ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~v  285 (635)
T PRK02888        212 KYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAV  285 (635)
T ss_pred             ceeEEEEEEECccceEEEEEEeC-CCcccceECCC-CCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhh
Confidence            34566777788877766666533 35577889998 666655542   1 223333332222111111000  0  0223


Q ss_pred             CCCCcEEEEEecCCcEEEEEccC----CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc------
Q 021121          202 KYDDCLIASASVDKSIKIWDVRN----YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA------  271 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------  271 (317)
                      + ++++...  .++.|.+.|.++    .......+. -......+.++|||+++++++..+.++.|.|+.+.+.      
T Consensus       286 k-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        286 K-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             h-CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            3 5665555  357899999987    333334443 3446689999999998888888899999999988552      


Q ss_pred             -----eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          272 -----LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       272 -----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                           +.....- ...-...+|.++ +....|--.|..|..|++..
T Consensus       362 ~~~~~vvaevev-GlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPEL-GLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeecc-CCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence                 2222222 223446788887 67888888899999999875

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.55  E-value=0.00026  Score=61.51  Aligned_cols=226  Identities=9%  Similarity=0.079  Sum_probs=127.7

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcc-----eE-EEEEecCCCCEEEEEc---------CCCEEEEEEcCC
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTRE-----VH-SADYNPTRRDSFITSS---------WDDTVKLWTVDR  138 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~~l~~~~---------~dg~v~iwd~~~  138 (317)
                      ..++.++.+|.|.-+|.+++   +.+.........     +. ...+..  . .++.++         .+|.+..+|.++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG---~~~W~~~~~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~T  184 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETG---KQVWKFGNNDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVET  184 (488)
T ss_pred             CeEEEecCCCeEEEEECCCC---CEeeeecCCCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCC
Confidence            36778888999999998876   444333321110     11 112221  2 455553         468899999999


Q ss_pred             CceeEEeeccccc--------------------e-EEEEEecCCCCeEEEEeCCC------------------eEEEEeC
Q 021121          139 PTSVRTFKEHAYC--------------------V-YNATWNPRHSDVFCSASGDC------------------TLRIWDV  179 (317)
Q Consensus       139 ~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~  179 (317)
                      ++.+..+......                    + ...++.+. ..+++.++.++                  .|.-+|.
T Consensus       185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~  263 (488)
T cd00216         185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA  263 (488)
T ss_pred             CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence            9888776532110                    0 12333444 45677776555                  7999999


Q ss_pred             CCCCceeeeccCccceE------EEEec---CCCC---cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCC
Q 021121          180 REMGSTMIIPAHEFEIL------ACDWN---KYDD---CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH  247 (317)
Q Consensus       180 ~~~~~~~~~~~~~~~v~------~i~~~---~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (317)
                      ++++..-.++.......      ...+.   ..++   ..++.++.+|.+..+|.++++. +......   ...++.+| 
T Consensus       264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~-  338 (488)
T cd00216         264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP-  338 (488)
T ss_pred             CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC-
Confidence            99988877642211110      00111   0122   2677888899999999999875 3332211   11233444 


Q ss_pred             CCeeEEe-----------------eecCCeEEEEecccccceeeeeec-cc------cee--EeEEEEeccCCeEEEeec
Q 021121          248 RRNLLAS-----------------CSYDMTVCLWDFMVEDALVGRYDH-HT------EFA--VGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       248 ~~~~l~~-----------------~~~d~~i~vwd~~~~~~~~~~~~~-~~------~~v--~~~~~~~~~~~~l~s~~~  301 (317)
                      +. +++.                 ...+|.+.-.|..+++.+-+.-.. +.      .+.  ..+..  . +.+|+.++.
T Consensus       339 ~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~-g~~v~~g~~  414 (488)
T cd00216         339 GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--A-GNLVFAGAA  414 (488)
T ss_pred             ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--c-CCeEEEECC
Confidence            22 2221                 124677888888888744332221 00      111  11222  2 568888889


Q ss_pred             CCcEEEEecCCCCC
Q 021121          302 DELVYVWQQGMDPR  315 (317)
Q Consensus       302 dg~i~~w~~~~~~~  315 (317)
                      ||.|+.+|..+.+.
T Consensus       415 dG~l~ald~~tG~~  428 (488)
T cd00216         415 DGYFRAFDATTGKE  428 (488)
T ss_pred             CCeEEEEECCCCce
Confidence            99999999876543

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.54  E-value=1.7e-05  Score=66.79  Aligned_cols=167  Identities=13%  Similarity=0.102  Sum_probs=103.5

Q ss_pred             ceeeccCCcceEEEEEecCCCCEEEEE--cCC-CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCe--
Q 021121           99 IRSLHEHTREVHSADYNPTRRDSFITS--SWD-DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT--  173 (317)
Q Consensus        99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--  173 (317)
                      ...+......+..-+|+|++..+....  ... ..+.++++++++...... ..+.-..-+|+|++..++++...||.  
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            334444456677788999988433332  222 469999999887665554 34445667899997777777777776  


Q ss_pred             EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe-cCCc--EEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121          174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS-VDKS--IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (317)
                      |+++|+..+... .+......-..-.|+| +|+.++-.+ ..|.  |.++|......  ..+......-..-.|+|+|+.
T Consensus       264 iy~~dl~~~~~~-~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~  339 (425)
T COG0823         264 IYLMDLDGKNLP-RLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDK  339 (425)
T ss_pred             EEEEcCCCCcce-ecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCE
Confidence            666677766533 3443333334678999 777766654 4444  66666665443  333333222237789999996


Q ss_pred             eEEeeecCCe--EEEEeccccc
Q 021121          251 LLASCSYDMT--VCLWDFMVED  270 (317)
Q Consensus       251 ~l~~~~~d~~--i~vwd~~~~~  270 (317)
                      +++....+|.  |.+.|+.++.
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCC
Confidence            5555544454  6666665554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.54  E-value=0.0002  Score=55.60  Aligned_cols=198  Identities=12%  Similarity=0.142  Sum_probs=110.4

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      ..+..++|+|+ .+.+++...+      .+.|..++.+  +..+..+ .+...+..-.|++..++ .++++.-.++.+.+
T Consensus        22 ~e~SGLTy~pd-~~tLfaV~d~------~~~i~els~~--G~vlr~i-~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   22 DELSGLTYNPD-TGTLFAVQDE------PGEIYELSLD--GKVLRRI-PLDGFGDYEGITYLGNG-RYVLSEERDQRLYI   90 (248)
T ss_dssp             S-EEEEEEETT-TTEEEEEETT------TTEEEEEETT----EEEEE-E-SS-SSEEEEEE-STT-EEEEEETTTTEEEE
T ss_pred             CCccccEEcCC-CCeEEEEECC------CCEEEEEcCC--CCEEEEE-eCCCCCCceeEEEECCC-EEEEEEcCCCcEEE
Confidence            35899999996 4556666654      7788777764  2223333 33445668888998765 45555445889999


Q ss_pred             EEeCCCCCCCCce---ee-----ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---CceeEEe--------ecc
Q 021121           88 YDTALPPTANPIR---SL-----HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR---PTSVRTF--------KEH  148 (317)
Q Consensus        88 ~~~~~~~~~~~~~---~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~--------~~~  148 (317)
                      +++..........   .+     ..++..+..++|.|.+. .|+.+-...-..++.+..   ...+...        ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            9985432211111   11     13456789999999877 566666665666666653   2221111        112


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc---------cceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE---------FEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      ...+.+++++|..+++++.......|..+| .+++.+..+.-..         ...-.|++.+ +|+++++ ++-+..++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEE
Confidence            345889999999888888888899999999 5666655443221         2467899998 7766655 45555555


Q ss_pred             E
Q 021121          220 W  220 (317)
Q Consensus       220 ~  220 (317)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.53  E-value=0.00021  Score=55.44  Aligned_cols=200  Identities=14%  Similarity=0.097  Sum_probs=115.3

Q ss_pred             eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-ccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       102 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      +.+-...+..++|+|+...++++....+.|..++.+ |+.++.+.-. .+....+++..+ +.++++.-.++.+.++++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEEEe
Confidence            344455699999999877688888889999999974 7777776533 355788888765 5555555568999999884


Q ss_pred             CCCc---e---eeec-----cCccceEEEEecCCCCcEEEEEecCCcEEEEEccC--CCccEEE--E------ecCCCce
Q 021121          181 EMGS---T---MIIP-----AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN--YRVPIAV--L------NGHGYAV  239 (317)
Q Consensus       181 ~~~~---~---~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~--~------~~~~~~v  239 (317)
                      ....   .   ..+.     .++..+-.++|+| ..+.|+.+-+..-..+|.++.  ....+..  .      ...-..+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3211   1   1111     2345688999999 555555566666677777764  1111111  1      1123457


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc---------ceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT---------EFAVGVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                      .+++++|...++++-...+..|..+| .+++ ++..+.-..         ...-+|+|.++ +. |+..+.-+..++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~-G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD-GN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcccCcccccCCccEEEECCC-CC-EEEEcCCceEEEe
Confidence            89999999888888888889999999 4444 333322111         24678999997 54 4445566665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.49  E-value=0.00028  Score=58.94  Aligned_cols=234  Identities=12%  Similarity=0.127  Sum_probs=125.1

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-------------------------------------
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-------------------------------------   50 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-------------------------------------   50 (317)
                      -.|..++|++. ...++++..       +|.|.||.+...+..                                     
T Consensus         2 ~~v~~vs~a~~-t~Elav~~~-------~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~   73 (395)
T PF08596_consen    2 VSVTHVSFAPE-TLELAVGLE-------SGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK   73 (395)
T ss_dssp             --EEEEEEETT-TTEEEEEET-------TS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred             ceEEEEEecCC-CceEEEEcc-------CCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc
Confidence            36889999995 577777776       788888877432100                                     


Q ss_pred             --ceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee--ec------cCCcceEEEEEec---
Q 021121           51 --LTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS--LH------EHTREVHSADYNP---  116 (317)
Q Consensus        51 --~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~--~~------~~~~~v~~~~~~~---  116 (317)
                        +.+.... ...++|++++.+.-|  ++|.|..+|.+.|.|++.+   ..+..  +.      .....++++.|.-   
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~  148 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTL  148 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred             cccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEec
Confidence              0111111 135789999998665  9999999999999999754   22221  11      2345688888862   


Q ss_pred             --CC--CCEEEEEcCCCEEEEEEcCC---Ccee----EEeeccccceEEEE-EecCC-------------------CCeE
Q 021121          117 --TR--RDSFITSSWDDTVKLWTVDR---PTSV----RTFKEHAYCVYNAT-WNPRH-------------------SDVF  165 (317)
Q Consensus       117 --~~--~~~l~~~~~dg~v~iwd~~~---~~~~----~~~~~~~~~v~~~~-~~~~~-------------------~~~l  165 (317)
                        |+  .-.+++|...|.+.+|.+.-   +...    .....+.+++..+. ++.+.                   -+-+
T Consensus       149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~  228 (395)
T PF08596_consen  149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY  228 (395)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred             CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence              21  12788999999999997741   1111    11123455666555 32220                   1123


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec----CCCCcEEEEEecCCcEEEEEccCCCccEEEEecC----CC
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN----KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH----GY  237 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~  237 (317)
                      +....+..++++..-+.+..............+.+-    ...+..|++-..+|.|++|.+...+. +......    ..
T Consensus       229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-i~~~~l~~~~d~~  307 (395)
T PF08596_consen  229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-IKSVSLPPPLDSR  307 (395)
T ss_dssp             EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E-EEEEE-SS---HH
T ss_pred             EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH-hhcccCCCccccc
Confidence            344456789999988776655544222233334442    11566788888999999999998775 4443332    12


Q ss_pred             ceeEEEecCCCCeeEEeee
Q 021121          238 AVRKVKFSPHRRNLLASCS  256 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~  256 (317)
                      .+....++++|. +++-.+
T Consensus       308 ~~~~ssis~~Gd-i~~~~g  325 (395)
T PF08596_consen  308 RLSSSSISRNGD-IFYWTG  325 (395)
T ss_dssp             HHTT-EE-TTS--EEEE-S
T ss_pred             cccccEECCCCC-EEEEeC
Confidence            455677888888 454443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.47  E-value=0.00017  Score=61.07  Aligned_cols=223  Identities=13%  Similarity=0.173  Sum_probs=117.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ....+..++++|  .+++++.++       +|.-.||.....    ....    .+.-....|.+.+  .+|+-...+.|
T Consensus        31 ~~~~p~~ls~np--ngr~v~V~g-------~geY~iyt~~~~----r~k~----~G~g~~~vw~~~n--~yAv~~~~~~I   91 (443)
T PF04053_consen   31 CEIYPQSLSHNP--NGRFVLVCG-------DGEYEIYTALAW----RNKA----FGSGLSFVWSSRN--RYAVLESSSTI   91 (443)
T ss_dssp             -SS--SEEEE-T--TSSEEEEEE-------TTEEEEEETTTT----EEEE----EEE-SEEEE-TSS--EEEEE-TTS-E
T ss_pred             CCcCCeeEEECC--CCCEEEEEc-------CCEEEEEEccCC----cccc----cCceeEEEEecCc--cEEEEECCCeE
Confidence            344578999999  677777766       889999983322    1221    1234567899854  67777778899


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      .++.--..   .....++. ...+..+-.   |. +|+..+ ++.|.+||+++++.++.+...  +|..+.|+++ +.++
T Consensus        92 ~I~kn~~~---~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~-g~~v  159 (443)
T PF04053_consen   92 KIYKNFKN---EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDD-GELV  159 (443)
T ss_dssp             EEEETTEE----TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TT-SSEE
T ss_pred             EEEEcCcc---ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECC-CCEE
Confidence            99742211   22122221 112333322   65 555555 458999999999999998743  3899999998 7888


Q ss_pred             EEEeCCCeEEEEeCCCC-----------CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec
Q 021121          166 CSASGDCTLRIWDVREM-----------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG  234 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  234 (317)
                      +..+.+ .+.+++....           .....+......|.+..|.. +  .++-.+.. .++.  +..++  ...+..
T Consensus       160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkY--l~~Ge--~~~i~~  230 (443)
T PF04053_consen  160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKY--LVNGE--TGIIAH  230 (443)
T ss_dssp             EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEE--EETTE--EEEEEE
T ss_pred             EEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEE--EEcCC--cceEEE
Confidence            777755 5677664322           02333332256788888975 4  44444434 6666  44443  233333


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      -..++.=+.+.|... .+.....|+.+..+.+...
T Consensus       231 ld~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  231 LDKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             -SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred             cCCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence            345677778888665 4777888888888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.41  E-value=0.00033  Score=57.52  Aligned_cols=213  Identities=12%  Similarity=0.067  Sum_probs=118.3

Q ss_pred             eEEEEEeCCCCCCCCceeec-cCCcceEEEEE---ecC---CCCEEEEEcC----------CCEEEEEEcCCC----cee
Q 021121           84 SVKIYDTALPPTANPIRSLH-EHTREVHSADY---NPT---RRDSFITSSW----------DDTVKLWTVDRP----TSV  142 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~---~~~---~~~~l~~~~~----------dg~v~iwd~~~~----~~~  142 (317)
                      .|++.|..+.   +.+..+. ...+.+.+++.   ..+   ...++++|..          .|.|.++++.+.    ..+
T Consensus         3 ~i~l~d~~~~---~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l   79 (321)
T PF03178_consen    3 SIRLVDPTTF---EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL   79 (321)
T ss_dssp             EEEEEETTTS---SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred             EEEEEeCCCC---eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence            4677775543   3333322 12334444433   222   1336776643          299999999884    222


Q ss_pred             EEe--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC--ccceEEEEecCCCCcEEEEEecCCcEE
Q 021121          143 RTF--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH--EFEILACDWNKYDDCLIASASVDKSIK  218 (317)
Q Consensus       143 ~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~~i~  218 (317)
                      ..+  ...+++|++++-..  +. ++++ .++.|.+|++...+.+.....+  ...+.++...   +++++.|.....+.
T Consensus        80 ~~i~~~~~~g~V~ai~~~~--~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSFN--GR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVS  152 (321)
T ss_dssp             EEEEEEEESS-EEEEEEET--TE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEE
T ss_pred             EEEEEEeecCcceEhhhhC--CE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEE
Confidence            222  23567899988762  44 4333 3578999999887723322222  2355566554   45889998888888


Q ss_pred             EEEccCCCccEEEE--ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc-------c-ceeee-eecccceeEeE-
Q 021121          219 IWDVRNYRVPIAVL--NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE-------D-ALVGR-YDHHTEFAVGV-  286 (317)
Q Consensus       219 v~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~-------~-~~~~~-~~~~~~~v~~~-  286 (317)
                      ++..+.....+..+  ......++++.|-+++. .++.+..+|.+.++.....       . .+... .......|+++ 
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~  231 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR  231 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence            88665422212222  23456788999987776 6889999999999987632       1 11111 11234567777 


Q ss_pred             --EEEe--ccCC-----eEEEeecCCcEEE
Q 021121          287 --DMSV--LVEG-----LLASTGWDELVYV  307 (317)
Q Consensus       287 --~~~~--~~~~-----~l~s~~~dg~i~~  307 (317)
                        ++.|  ....     .++-++.+|.|..
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EEEeeecCCCCcccccceEEEEecCCEEEE
Confidence              4444  1122     3777778898873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.41  E-value=1.3e-05  Score=68.59  Aligned_cols=155  Identities=12%  Similarity=0.112  Sum_probs=101.0

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      ..|.--++...+ .+++.|+..|.+.+|+-..+.  .......+..+.+..+..+++.. +++.|+..|.|.++-++...
T Consensus        34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             ceEEEEEeecCC-ceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence            334444555555 599999999999999966541  11112222344555666777766 88999999999999887643


Q ss_pred             eeEEe------eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC----CceeeeccCccceEEEEecCCCCcEEEE
Q 021121          141 SVRTF------KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM----GSTMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       141 ~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      .....      +.|+..|++++|+++ +..+++|...|+|..-.+...    -..+.+....+.|..+.+.  .+.+|++
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVS  186 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVS  186 (726)
T ss_pred             CCcceeeccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHh
Confidence            21111      236789999999999 888999999999998887762    1222333456677777765  3444444


Q ss_pred             EecCCcEEEEEccC
Q 021121          211 ASVDKSIKIWDVRN  224 (317)
Q Consensus       211 ~~~d~~i~v~d~~~  224 (317)
                      .. -. -.+++.+.
T Consensus       187 tl-~r-~~Lc~tE~  198 (726)
T KOG3621|consen  187 TL-TR-CILCQTEA  198 (726)
T ss_pred             hh-hh-hheeecch
Confidence            33 22 33555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.40  E-value=0.00067  Score=55.70  Aligned_cols=217  Identities=8%  Similarity=0.111  Sum_probs=123.5

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecC---C---CCCeEEEEEc---------C-CeEEEEEeCCC-CCCCCce
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSE---S---HDSLLIAAVA---------D-GSVKIYDTALP-PTANPIR  100 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~---~~~~l~~~~~---------d-g~i~v~~~~~~-~~~~~~~  100 (317)
                      .|++.|..+... . ....+...+.+.+++...   +   ...++++|+.         . |.|.++++... .....+.
T Consensus         3 ~i~l~d~~~~~~-~-~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    3 SIRLVDPTTFEV-L-DSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             EEEEEETTTSSE-E-EEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             EEEEEeCCCCeE-E-EEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            677887765541 2 233334555566555432   2   1357887765         2 89999999863 1111222


Q ss_pred             e--eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121          101 S--LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRI  176 (317)
Q Consensus       101 ~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (317)
                      .  .....++|++++-.  +. .++++. .+.|.+|++...+ ....-.. ....+.++...   ++++++|.....+.+
T Consensus        81 ~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEE
T ss_pred             EEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEE
Confidence            1  22457889998876  23 444444 4799999999887 3333221 23356666665   568889988888888


Q ss_pred             EeCCCC-Cceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC------Cc-cEEE--EecCCCceeEE--
Q 021121          177 WDVREM-GSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY------RV-PIAV--LNGHGYAVRKV--  242 (317)
Q Consensus       177 ~d~~~~-~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~-~~~~--~~~~~~~v~~~--  242 (317)
                      +..+.. ..+..+.  .....++++.+-+ +++.++.+..+|.+.++.....      .. .+..  .-..+..|+++  
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~  232 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR  232 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence            755442 2222222  2345588888886 4468999999999999987631      11 1211  11234567777  


Q ss_pred             -EecC--CCCe-----eEEeeecCCeEEEE
Q 021121          243 -KFSP--HRRN-----LLASCSYDMTVCLW  264 (317)
Q Consensus       243 -~~~~--~~~~-----~l~~~~~d~~i~vw  264 (317)
                       .+.|  .+..     .++.++.+|.|-+.
T Consensus       233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence             5555  2221     36777788888844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.40  E-value=0.00095  Score=56.97  Aligned_cols=242  Identities=13%  Similarity=0.093  Sum_probs=129.2

Q ss_pred             eeEEEecCCCCCeEEEEEcCC----eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC----------C
Q 021121           63 VYDLAWSESHDSLLIAAVADG----SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW----------D  128 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg----~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------d  128 (317)
                      +....++|+++.++++-+..|    .++++|++++   +.+...- .......+.|.+++..++.+...          .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            346788999964444545555    4999999876   3332211 11122349999998845555532          3


Q ss_pred             CEEEEEEcCCCcee--EEeeccccc--eEEEEEecCCCCeEEE-EeCC---CeEEEEeCCCC----CceeeeccCccce-
Q 021121          129 DTVKLWTVDRPTSV--RTFKEHAYC--VYNATWNPRHSDVFCS-ASGD---CTLRIWDVREM----GSTMIIPAHEFEI-  195 (317)
Q Consensus       129 g~v~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~-~~~d---g~i~i~d~~~~----~~~~~~~~~~~~v-  195 (317)
                      ..|+.|.+.+....  ..+......  ...+..+++ +++++. ....   ..+.+.|+...    .....+......+ 
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            34888888776433  344433332  567888988 555443 3332   35888888874    2333333333333 


Q ss_pred             EEEEecCCCCcEEEEEe---cCCcEEEEEccCCCc--cEEEEecCCC--ceeEEEecCCCCeeEEeeecCCe--EEEEec
Q 021121          196 LACDWNKYDDCLIASAS---VDKSIKIWDVRNYRV--PIAVLNGHGY--AVRKVKFSPHRRNLLASCSYDMT--VCLWDF  266 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~--i~vwd~  266 (317)
                      ..+...  .+.+++...   ..+.|...++.....  ....+..+..  .+..+..  .+.++++....++.  |+++++
T Consensus       281 ~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  281 YYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence            333333  444444433   235677777777652  1224555555  3444444  45557777777764  788888


Q ss_pred             c-cccceeeeeecccceeEeEEEEeccCCeEEEee---cCCcEEEEecCCCC
Q 021121          267 M-VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG---WDELVYVWQQGMDP  314 (317)
Q Consensus       267 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~  314 (317)
                      . ... .......-.+.|..+...++...+.++.+   .-+.+..||+.++.
T Consensus       357 ~~~~~-~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  357 DDGKE-SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             T-TEE-EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             CCCcE-EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            8 433 22222223445666665555344444444   24677777777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.39  E-value=0.00037  Score=57.96  Aligned_cols=224  Identities=13%  Similarity=0.127  Sum_probs=121.6

Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-ec-------c-----
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KE-------H-----  148 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~-------~-----  148 (317)
                      .+.+.+||++++    ....+......+....|+|+|+ .++-.. ++.|.+++..+++..+.- .+       -     
T Consensus        22 ~~~y~i~d~~~~----~~~~l~~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   22 KGDYYIYDIETG----EITPLTPPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEEEETTTT----EEEESS-EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred             ceeEEEEecCCC----ceEECcCCccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence            367889998864    2222222256788899999998 666555 578999998776333211 11       0     


Q ss_pred             ----ccceEEEEEecCCCCeEEEEe-CCCe-----------------------------------EEEEeCCCCCcee-e
Q 021121          149 ----AYCVYNATWNPRHSDVFCSAS-GDCT-----------------------------------LRIWDVREMGSTM-I  187 (317)
Q Consensus       149 ----~~~v~~~~~~~~~~~~l~~~~-~dg~-----------------------------------i~i~d~~~~~~~~-~  187 (317)
                          -+.-..+.|+|+ ++.|+... ++..                                   +.++|+.+++... .
T Consensus        96 eEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~  174 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELD  174 (353)
T ss_dssp             HHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE-
T ss_pred             cccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEee
Confidence                112356889999 55555332 2222                                   3345554444321 1


Q ss_pred             e----ccCccceEEEEecCCCCcEEEEE--ecCC---cEEEEEccCCCccEEEEecCCCce---eEEEec-CCCCeeEEe
Q 021121          188 I----PAHEFEILACDWNKYDDCLIASA--SVDK---SIKIWDVRNYRVPIAVLNGHGYAV---RKVKFS-PHRRNLLAS  254 (317)
Q Consensus       188 ~----~~~~~~v~~i~~~~~~~~~l~~~--~~d~---~i~v~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~  254 (317)
                      .    ......+..+.|.+ ++..++..  ..+.   .+.++|..++.............|   ....|. +++..+|..
T Consensus       175 ~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~  253 (353)
T PF00930_consen  175 PPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI  253 (353)
T ss_dssp             --HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred             eccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence            1    12344578889988 66633332  2222   467778877654333333333333   355665 777777777


Q ss_pred             eecCCeEEEEecccccceeeeeecccceeEe-EEEEeccCCeEEEeecC--CcEEEEecCCC
Q 021121          255 CSYDMTVCLWDFMVEDALVGRYDHHTEFAVG-VDMSVLVEGLLASTGWD--ELVYVWQQGMD  313 (317)
Q Consensus       255 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d--g~i~~w~~~~~  313 (317)
                      ...+|.-+|+-+.........+....-.|.. +.++++++.+..++..+  +.-.+|.++.+
T Consensus       254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            7788876666554443333444444555644 67777755555566542  35555655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.37  E-value=0.001  Score=56.36  Aligned_cols=190  Identities=10%  Similarity=0.110  Sum_probs=99.6

Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-------eccccceEEEE
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-------KEHAYCVYNAT  156 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~~v~~~~  156 (317)
                      .|++|+...    +.+..+.-..+.+.++.|..+.  .|+....||.++++|+... ....+       .-....+....
T Consensus        62 ~I~iys~sG----~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~-~~fsl~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYSSSG----KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGE-FQFSLGEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEECCCC----CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCc-eeechhhhccccCcccccccccc
Confidence            488888653    4455444334899999998864  4677778999999998633 31111       11111222222


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCC-ceeeec---cCcc------ceEE-EEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMG-STMIIP---AHEF------EILA-CDWNKYDDCLIASASVDKSIKIWDVRNY  225 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~------~v~~-i~~~~~~~~~l~~~~~d~~i~v~d~~~~  225 (317)
                      +... |  ++.-..++.+.+..--... ..+.+.   ....      .... ..++. +....+....++.+.+.+....
T Consensus       135 ~~~~-G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~  210 (410)
T PF04841_consen  135 FYKN-G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSF  210 (410)
T ss_pred             cCCC-C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccc
Confidence            2222 3  3333445555444322211 111111   1000      0000 12232 3333444444455554443321


Q ss_pred             CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEec
Q 021121          226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVL  291 (317)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~  291 (317)
                      +    .+. ..+++..|+.||+++ ++|.-..+|.+.+....-.+ ....+.- .......|.|+.+
T Consensus       211 ~----~i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  211 K----QID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             c----ccc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECC
Confidence            1    121 235899999999999 68888889999888765544 3333332 2445677888864

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.00064  Score=57.06  Aligned_cols=202  Identities=14%  Similarity=0.095  Sum_probs=133.8

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCC
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRP  139 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~  139 (317)
                      .-..++.++.+.+..+....++.|.+.|....   ........ ......++++++++...++-.  .++.+.+.|..+.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCccc---ceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            34567888888667777777789999996554   33322221 225677899999984555545  3799999999999


Q ss_pred             ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-----eeccCccceEEEEecCCCCcEEEEEecC
Q 021121          140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-----IIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      +..........+ ..+++.|++....++-..++.|.+.|.+......     ... .......+.++| ++..+......
T Consensus       151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~-~g~~~yV~~~~  227 (381)
T COG3391         151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDP-DGNRVYVANDG  227 (381)
T ss_pred             eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECC-CCCEEEEEecc
Confidence            888875544444 9999999955466666689999999977654442     122 222346788898 77655444333


Q ss_pred             ---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          215 ---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       215 ---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                         +.+...|..+.................+..+|++..+.+.-+..+.+.+-|..+..
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence               58888888876532221221111456789999999544443555889998887765

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=0.0009  Score=53.90  Aligned_cols=210  Identities=13%  Similarity=0.130  Sum_probs=118.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-c-CCcceEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-E-HTREVHSAD  113 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~-~~~~v~~~~  113 (317)
                      .++|.-|+.....     ...+..+..+.++..-..+ ..|+++ ..| +.+++.+.+.....+.... + ....-+.+.
T Consensus        46 ~~~i~r~~~~~g~-----~~~~~~p~~~~~~~~~d~~-g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~  117 (307)
T COG3386          46 GGRIHRLDPETGK-----KRVFPSPGGFSSGALIDAG-GRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGV  117 (307)
T ss_pred             CCeEEEecCCcCc-----eEEEECCCCcccceeecCC-CeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence            6677777776443     3334555566666555444 245444 334 6677765432211111111 1 124566788


Q ss_pred             EecCCCCEEEEEcC-----------CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC-
Q 021121          114 YNPTRRDSFITSSW-----------DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE-  181 (317)
Q Consensus       114 ~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  181 (317)
                      ..|+|. +.++...           -|.|+.+|. .+...+.+..+-...+.|+|+|++..++++=+..+.|.-|++.. 
T Consensus       118 v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~  195 (307)
T COG3386         118 VDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA  195 (307)
T ss_pred             EcCCCC-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence            889987 4333322           144555554 45666666655666789999999445555555568888888762 


Q ss_pred             -C---Cc--eeeeccCccceEEEEecCCCCcEEEEEecCC-cEEEEEccCCCccEEEEecCCCceeEEEec-CCCCeeEE
Q 021121          182 -M---GS--TMIIPAHEFEILACDWNKYDDCLIASASVDK-SIKIWDVRNYRVPIAVLNGHGYAVRKVKFS-PHRRNLLA  253 (317)
Q Consensus       182 -~---~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~  253 (317)
                       +   ..  ...........-.++... ++++.+++..+| .|.+|+.. ++. +..+.-....+++++|- |+.+.+++
T Consensus       196 ~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         196 TGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKL-LGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             cCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcE-EEEEECCCCCCccceEeCCCcCEEEE
Confidence             1   11  111122233445566666 777775555444 89999988 453 55555554677888885 34455566


Q ss_pred             eeecC
Q 021121          254 SCSYD  258 (317)
Q Consensus       254 ~~~~d  258 (317)
                      ++...
T Consensus       273 Ts~~~  277 (307)
T COG3386         273 TSARS  277 (307)
T ss_pred             EecCC
Confidence            65544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.32  E-value=0.00056  Score=52.05  Aligned_cols=143  Identities=12%  Similarity=-0.013  Sum_probs=96.9

Q ss_pred             EecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc
Q 021121          114 YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF  193 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (317)
                      ..++.+.+++.|+..+.+.--|..+|+.+.+-. -..++.+-+.- - ++.++.|...|.+++.+.++++....+...+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            345555689999999999999999998766543 23334443333 2 67799999999999999999988777764433


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEE
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC  262 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  262 (317)
                      --......+ ++.++..|+.|+..+..|.++... +...+...+...+-+..|.... |..+...|.+.
T Consensus        95 vk~~a~~d~-~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vl  160 (354)
T KOG4649|consen   95 VKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVL  160 (354)
T ss_pred             hccceEEcC-CCceEEEecCCCcEEEecccccce-EEecccCCceeccceecCCCce-EEEEeccceEE
Confidence            222334455 889999999999999999998654 6665544444445555662222 33344445443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.24  E-value=0.0027  Score=55.33  Aligned_cols=151  Identities=9%  Similarity=0.060  Sum_probs=88.0

Q ss_pred             EEecCCCCEEEEEcCCC------------------EEEEEEcCCCceeEEeeccccceE------EEEEec---CCC---
Q 021121          113 DYNPTRRDSFITSSWDD------------------TVKLWTVDRPTSVRTFKEHAYCVY------NATWNP---RHS---  162 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~~~~~~v~------~~~~~~---~~~---  162 (317)
                      .+.+.+. .++.++.++                  .|.-+|+++++....++.......      ...+.+   .++   
T Consensus       223 a~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~  301 (488)
T cd00216         223 TYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV  301 (488)
T ss_pred             eEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence            3444444 677776665                  799999999998887653211111      011110   112   


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE------------------ecCCcEEEEEccC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA------------------SVDKSIKIWDVRN  224 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~------------------~~d~~i~v~d~~~  224 (317)
                      ..++.++.+|.+...|.++++.+-.....   ...++.+|   ..+..+                  ..+|.+.-.|+.+
T Consensus       302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         302 PAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             EEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence            25778889999999999999887765421   11123333   222221                  2356788888887


Q ss_pred             CCccEEEEecC--C------Cce--eEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121          225 YRVPIAVLNGH--G------YAV--RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG  274 (317)
Q Consensus       225 ~~~~~~~~~~~--~------~~v--~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  274 (317)
                      ++. +-.....  .      .+.  ..+..  .+. +++.++.||.++.+|..+++.+-.
T Consensus       376 G~~-~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~  431 (488)
T cd00216         376 GKV-VWEKREGTIRDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWK  431 (488)
T ss_pred             CcE-eeEeeCCccccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeE
Confidence            764 3222211  0      111  11222  334 688888999999999999985433

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.0021  Score=53.96  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=151.2

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      ....+...+++....++-.....+...+.. .   ..... ...-...-..++.++.+...++....+..|.+.|..+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~---n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-S---NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-c---ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence            556677888875444444333344444433 1   11111 111113345678888888666676677999999988777


Q ss_pred             eeEEeeccccceEEEEEecCCCCeEEEEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE-EEEEecCCcE
Q 021121          141 SVRTFKEHAYCVYNATWNPRHSDVFCSAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL-IASASVDKSI  217 (317)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~~~~~d~~i  217 (317)
                      ......... ....++++|++..+.++-.  .++.+.+.|..+.+.......-..+ ..++++| +++. +++-..++.|
T Consensus       108 ~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v  184 (381)
T COG3391         108 VLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTV  184 (381)
T ss_pred             eeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeE
Confidence            766665333 6789999999545555555  3789999999988887775544444 8899999 7774 4444578899


Q ss_pred             EEEEccCCCccEE-----EEecCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121          218 KIWDVRNYRVPIA-----VLNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       218 ~v~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      .++|...... ..     ... -......+.++|++.++.++-..+  +.+...|..++................+..+|
T Consensus       185 ~vi~~~~~~v-~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p  262 (381)
T COG3391         185 SVIDTSGNSV-VRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP  262 (381)
T ss_pred             EEEeCCCcce-eccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence            9999766432 21     111 222346789999999644444444  58888888877632221111111456788899


Q ss_pred             ccCCeEEEe-ecCCcEEEEecCCC
Q 021121          291 LVEGLLAST-GWDELVYVWQQGMD  313 (317)
Q Consensus       291 ~~~~~l~s~-~~dg~i~~w~~~~~  313 (317)
                      + +..+... +..+.+.+-|....
T Consensus       263 ~-g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         263 A-GKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             C-CCEEEEEecCCCeEEEEeCCCC
Confidence            8 5555544 44577777776553

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.23  E-value=0.00015  Score=62.80  Aligned_cols=104  Identities=11%  Similarity=0.067  Sum_probs=74.5

Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCC-----CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-----
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDR-----PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-----  184 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----  184 (317)
                      .++|+ +...  .++.|.+.|..+     .+.+..+. -...+..+.++|++..+++++..+.++.+.|+++.+.     
T Consensus       285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        285 VKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhCCC-EEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            45666 4444  357899999988     34444444 4566899999999555566666799999999987653     


Q ss_pred             -------eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          185 -------TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       185 -------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                             ...... .......+|.+ +++.+.+-.-|..|..||+..
T Consensus       361 ~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                   222222 23345778988 888888888999999999875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=8.6e-05  Score=61.86  Aligned_cols=146  Identities=16%  Similarity=0.214  Sum_probs=101.7

Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC------CeEEEEeCCCeEEEEeCCCCCc--eee
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS------DVFCSASGDCTLRIWDVREMGS--TMI  187 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~--~~~  187 (317)
                      .+.+.++.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+..      ..-+.|-.+..|.-||+|-...  +..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            34443556666777899999999999999886666 77777777521      1123567788899999984332  111


Q ss_pred             eccC----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEE
Q 021121          188 IPAH----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL  263 (317)
Q Consensus       188 ~~~~----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~v  263 (317)
                      .+.|    .....|.+-.  ...++++|+.+|.|++||- .+......+++.+.+|..+..+.+|+.+|+|+  +..+.+
T Consensus       422 ~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlL  496 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLL  496 (644)
T ss_pred             eeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEE
Confidence            1111    2234566555  4458999999999999997 55555677888999999999999999655444  566777


Q ss_pred             Eecc
Q 021121          264 WDFM  267 (317)
Q Consensus       264 wd~~  267 (317)
                      -++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            6654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.1e-05  Score=68.18  Aligned_cols=95  Identities=20%  Similarity=0.150  Sum_probs=79.1

Q ss_pred             ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee-EEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR-KVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ...+.-+.|+| .-.++|.+..+|.+.+..+. .+ .+..+.-++..++ +++|.|||+ +|+.|-.||+|++-|+.++.
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence            34577899999 88999999999999999887 33 3777776777777 999999998 89999999999999999998


Q ss_pred             ceeeeeecccceeEeEEEEe
Q 021121          271 ALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       271 ~~~~~~~~~~~~v~~~~~~~  290 (317)
                      .+..........|..+-|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            66665555567788888864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.18  E-value=0.00017  Score=47.61  Aligned_cols=102  Identities=12%  Similarity=0.091  Sum_probs=70.1

Q ss_pred             eeEEEec---CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121           63 VYDLAWS---ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP  139 (317)
Q Consensus        63 v~~~~~~---~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  139 (317)
                      |++|++.   .+|.+.|++|+.|..|++|+-+     ..+..+. ..+.|++++-...+  .++.+..+|+|-+|+-  .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~--~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDR--S   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeC--c
Confidence            4555554   4666899999999999999843     3444444 35677777766553  6999999999999975  3


Q ss_pred             ceeEEeeccccceEEEEEecC---CCCeEEEEeCCCeEE
Q 021121          140 TSVRTFKEHAYCVYNATWNPR---HSDVFCSASGDCTLR  175 (317)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~  175 (317)
                      +.+...+. +..+.++.+..-   +..-|++|-.+|.|-
T Consensus        72 ~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            34444443 334666665543   334688888888874

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.17  E-value=0.0022  Score=51.51  Aligned_cols=250  Identities=13%  Similarity=0.082  Sum_probs=130.8

Q ss_pred             EEEecCCCCeEEEEEecccccc----cCceEEEEecCCCCCcceeeeeecCC------CCeeEEEecCCCCCeEEEEEc-
Q 021121           13 VKFSPFYESRLAVATAQNFGIL----GNGRVHVLDLSPAAPALTELVAFDTA------DGVYDLAWSESHDSLLIAAVA-   81 (317)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~----~~g~i~i~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~-   81 (317)
                      +..+|  +++.+......+.-.    ++-.|.+||..+-.+.....  +...      .....++++.++ +++++... 
T Consensus        41 ~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~--iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~T  115 (342)
T PF06433_consen   41 VALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE--IPPKPRAQVVPYKNMFALSADG-KFLYVQNFT  115 (342)
T ss_dssp             EEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE--ETTS-B--BS--GGGEEE-TTS-SEEEEEEES
T ss_pred             eeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe--cCCcchheecccccceEEccCC-cEEEEEccC
Confidence            56788  455544433322211    13468999988754211111  1111      122335566666 35444433 


Q ss_pred             -CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-CCceeEEee----ccccce-EE
Q 021121           82 -DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRTFK----EHAYCV-YN  154 (317)
Q Consensus        82 -dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~----~~~~~v-~~  154 (317)
                       ...|.|-|+...   +.+..+.. .+   |....|.++.-+.+-+.||.+.-..+. .|+...+..    ....++ ..
T Consensus       116 Pa~SVtVVDl~~~---kvv~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~  188 (342)
T PF06433_consen  116 PATSVTVVDLAAK---KVVGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH  188 (342)
T ss_dssp             SSEEEEEEETTTT---EEEEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred             CCCeEEEEECCCC---ceeeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence             245777776654   33333321 11   222334444468888999999999887 454432221    111222 22


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCcee--eeccC----------ccceEEEEecCCCCcEEEEEec-------CC
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTM--IIPAH----------EFEILACDWNKYDDCLIASASV-------DK  215 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~v~~i~~~~~~~~~l~~~~~-------d~  215 (317)
                      -++... +..++-.+.+|.|+--|+.......  .+...          .+.-.-+++++..+++++.-..       |+
T Consensus       189 ~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp  267 (342)
T PF06433_consen  189 PAYSRD-GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP  267 (342)
T ss_dssp             -EEETT-TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred             cceECC-CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence            233333 4455567889999999887654322  11100          1123457777745555444321       11


Q ss_pred             --cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeec
Q 021121          216 --SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       216 --~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                        .|-+||+.+.+. +..+.. ..++.+|+.+.+.+-+|++.+ .++.+.+||..+++ .+..+..
T Consensus       268 gteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk-~~~~~~~  330 (342)
T PF06433_consen  268 GTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK-LVRSIEQ  330 (342)
T ss_dssp             EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred             ceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc-EEeehhc
Confidence              478888888664 555542 236889999998876676554 57999999999986 4555543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.4e-05  Score=67.59  Aligned_cols=95  Identities=19%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceE-EEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEIL-ACDWNKYDDCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      ...+..+.|+|. -.++|.+..+|.|.++.+. ...+.+++-+...++ +++|.| +|++|+.|-.||+|++.|..++..
T Consensus        20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence            345888999998 8999999999999999887 666777776666676 999999 999999999999999999999875


Q ss_pred             cEEEEecCCCceeEEEecC
Q 021121          228 PIAVLNGHGYAVRKVKFSP  246 (317)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~  246 (317)
                      .......-...|.++-|++
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            4443334456788888864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.14  E-value=0.0038  Score=52.95  Aligned_cols=209  Identities=11%  Similarity=0.123  Sum_probs=106.7

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC---CCCCceeeccCCcceEEEEE
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP---TANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~~~~~~~~v~~~~~  114 (317)
                      .|+||+.....  +.. ..+.. +.|.++.|..+.  .|++-..||.+++||+....   -........-....+....+
T Consensus        62 ~I~iys~sG~l--l~~-i~w~~-~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSSGKL--LSS-IPWDS-GRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCCCCE--eEE-EEECC-CCEEEEEECCCC--eEEEEEcCCEEEEEeCCCceeechhhhccccCccccccccccc
Confidence            58888766542  333 33344 789999999864  56677789999999986331   00111111111222222233


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeecccc---------ceEE-EEEecCCCCeEEEEeCCCeEEEEeCCCCC
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAY---------CVYN-ATWNPRHSDVFCSASGDCTLRIWDVREMG  183 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~---------~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (317)
                      ..+|   ++.-..++.+.+..-.... ..+.+.....         .... ..+..+ ....+....++.+.+.+-...+
T Consensus       136 ~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  136 YKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD-RVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC-cceEEEEecCCEEEEEEccccc
Confidence            3333   2333334555444322211 1111111000         0111 223333 3344444455556644433221


Q ss_pred             ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC-CCceeEEEecCCCCeeEEeeecCCeEE
Q 021121          184 STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH-GYAVRKVKFSPHRRNLLASCSYDMTVC  262 (317)
Q Consensus       184 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~  262 (317)
                      .   +. ..+++..++.|| +++++|.-..+|.+.+.+..-.+ .+..+... ......+.|.-+.. +++.-  ...+.
T Consensus       212 ~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~da-v~l~~--~~~l~  282 (410)
T PF04841_consen  212 Q---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDA-VVLSW--EDELL  282 (410)
T ss_pred             c---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECCCc-EEEEe--CCEEE
Confidence            1   22 246899999999 99999999999999998764433 34333322 34566788876543 22222  34555


Q ss_pred             EEe
Q 021121          263 LWD  265 (317)
Q Consensus       263 vwd  265 (317)
                      +..
T Consensus       283 lvg  285 (410)
T PF04841_consen  283 LVG  285 (410)
T ss_pred             EEC
Confidence            554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.13  E-value=0.00012  Score=65.52  Aligned_cols=146  Identities=10%  Similarity=-0.010  Sum_probs=100.3

Q ss_pred             CCCeEEEE-eCCCeEEEEeCCCCCceeeeccCccc-eEEEEecC----CCCcEEEEEecCCcEEEEEccCCCccEEEEe-
Q 021121          161 HSDVFCSA-SGDCTLRIWDVREMGSTMIIPAHEFE-ILACDWNK----YDDCLIASASVDKSIKIWDVRNYRVPIAVLN-  233 (317)
Q Consensus       161 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-  233 (317)
                      +.++|+.. .....|+-.|++.++.+..+..+... |..++-..    .+....+.|-.+..+..||.|-....+..-. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            35555544 35678999999999999998876644 55554321    1233456677788999999997542222211 


Q ss_pred             ---cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          234 ---GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       234 ---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                         ......+|++-+.+|  .||.|+.+|.||+||- .+......+.+-..+|.+|..+.| |++|++.+ +..|.+.+.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~D-GkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTAD-GKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCC-CcEEEEee-cceEEEEEE
Confidence               234467788888777  5999999999999994 444444556677899999999999 55554443 566777775


Q ss_pred             C
Q 021121          311 G  311 (317)
Q Consensus       311 ~  311 (317)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            3

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.10  E-value=0.0031  Score=50.73  Aligned_cols=262  Identities=13%  Similarity=0.070  Sum_probs=144.5

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----------cCCeEEEEEeCCCCCCCCceee--c
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----------ADGSVKIYDTALPPTANPIRSL--H  103 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~--~  103 (317)
                      .++++++|.++.+  +.-+..   .+-.-.+..+|+++ .+.+++          ..-.|.+||..+-   .+...+  .
T Consensus        16 ~~rv~viD~d~~k--~lGmi~---~g~~~~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL---~~~~EI~iP   86 (342)
T PF06433_consen   16 TSRVYVIDADSGK--LLGMID---TGFLGNVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTL---SPTGEIEIP   86 (342)
T ss_dssp             SEEEEEEETTTTE--EEEEEE---EESSEEEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTT---EEEEEEEET
T ss_pred             cceEEEEECCCCc--EEEEee---cccCCceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcC---cccceEecC
Confidence            3589999977654  221111   12233466789984 555532          3456999998764   222211  1


Q ss_pred             c-CC----cceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121          104 E-HT----REVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI  176 (317)
Q Consensus       104 ~-~~----~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (317)
                      . |.    .....++++.+++ +++..  +-.-+|.|-|+..++.+.++... +   |...-|.++.-|.+-+.||.+.-
T Consensus        87 ~k~R~~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen   87 PKPRAQVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLT  161 (342)
T ss_dssp             TS-B--BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEE
T ss_pred             CcchheecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEE
Confidence            1 11    1223356777877 54443  44567888898888887776532 2   12223444566888899999999


Q ss_pred             EeCCC-CCceeee----ccCccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCCccE-EEEec----------CCCce
Q 021121          177 WDVRE-MGSTMII----PAHEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI-AVLNG----------HGYAV  239 (317)
Q Consensus       177 ~d~~~-~~~~~~~----~~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~----------~~~~v  239 (317)
                      ..+.. ++.....    .....++ ..-++.. .+..++--+.+|.|+-.|+....... .....          ..+.-
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            88874 4443221    1112222 2333444 34444446789999999987654211 11110          01233


Q ss_pred             eEEEecCCCCeeEEeee--cCC-------eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEe
Q 021121          240 RKVKFSPHRRNLLASCS--YDM-------TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQ  309 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~--~d~-------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~  309 (317)
                      .-+++++...++++.--  .++       .|-++|+.+++. +.++.. ..++.+|+.+.+..-+|++. ..++.|.+||
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            45788876654332211  122       377778888774 444443 34578999998844477654 4689999999


Q ss_pred             cCCCC
Q 021121          310 QGMDP  314 (317)
Q Consensus       310 ~~~~~  314 (317)
                      ..+..
T Consensus       319 ~~tGk  323 (342)
T PF06433_consen  319 AATGK  323 (342)
T ss_dssp             TTT--
T ss_pred             CcCCc
Confidence            98753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.08  E-value=0.00057  Score=45.14  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=69.5

Q ss_pred             eeEEEEec---CCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121           10 GYSVKFSP---FYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus        10 v~~~~~~p---~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      |++|++..   ++.+.|++++.       |..|++|+-..      .+......+.|++++-...  ..++.+..+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~-------D~~IRvf~~~e------~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSD-------DFEIRVFKGDE------IVAEITETDKVTSLCSLGG--GRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecC-------CcEEEEEeCCc------EEEEEecccceEEEEEcCC--CEEEEEecCCEEE
Confidence            66777766   33466777766       88999998543      3444456778888888765  4799999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEe---cCCCCEEEEEcCCCEEEE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYN---PTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~v~i  133 (317)
                      +|+-.     ..+...+. +..+.++++.   .+|...|++|-.+|.|-+
T Consensus        67 vY~~~-----~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   67 VYDRS-----QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEeCc-----ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            99853     22333332 2335565553   445557999998998743

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.08  E-value=0.004  Score=51.05  Aligned_cols=200  Identities=13%  Similarity=0.187  Sum_probs=99.5

Q ss_pred             EecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC-cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe
Q 021121           67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHT-REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF  145 (317)
Q Consensus        67 ~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  145 (317)
                      +|.++|.++|+.+..+|.-.+|-++...  ..+..+.... .......++|+++ .++-......|+-.|+++.+....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEE
Confidence            5788887788877777766666554321  2333333322 2222456678876 5544444568899999998876666


Q ss_pred             eccccceEEEEEecC-CCCeEEEEe----------------------CCCeEEEEeCCCCCceeeeccCccceEEEEecC
Q 021121          146 KEHAYCVYNATWNPR-HSDVFCSAS----------------------GDCTLRIWDVREMGSTMIIPAHEFEILACDWNK  202 (317)
Q Consensus       146 ~~~~~~v~~~~~~~~-~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~  202 (317)
                      ......+-...|..+ ++..++-.-                      ....|.-.|+.+++....+. ....+..+.++|
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP  197 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSP  197 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEET
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCC
Confidence            666666655666532 244433211                      12345566777766544444 556788999999


Q ss_pred             CCCcEEEEEecCC----cEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeee----cCCeEEEEeccccc
Q 021121          203 YDDCLIASASVDK----SIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCS----YDMTVCLWDFMVED  270 (317)
Q Consensus       203 ~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~----~d~~i~vwd~~~~~  270 (317)
                      .++.+|+-|.+..    .-|+|-++........+..+  ...+..=-|.|+|..+..-+-    .+..|.-+|+.+++
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            8888888876432    23677666543323333322  233444568999986554332    34457777887765

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=6.5e-06  Score=60.99  Aligned_cols=145  Identities=10%  Similarity=0.035  Sum_probs=84.9

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      ..+...+.+|.|+-++++..+....-.   ..+.+..-.+..+..+++|+.+|.|++|..............-...|-++
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse---~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSE---RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhh---hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            344556778888888877543222111   11111111112456788999999999998773222111111122233332


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc-ceeEeEEEEeccCCeEEEe--ecCCcEEEEecCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT-EFAVGVDMSVLVEGLLAST--GWDELVYVWQQGM  312 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~i~~w~~~~  312 (317)
                      .-.-+...+..+++.||.|+.|++.-.+ .+.....|. .++.....+.. +..++.+  |.|..++.|++..
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~~e~~ivv~s-d~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFESGEELIVVGS-DEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCc-eeeeeccccCCCcceeEEecC-CceEEeeccccchhhhhcchhh
Confidence            2222222278899999999999988776 445555666 45555555554 5677777  7788888888765

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=98.06  E-value=0.0051  Score=51.66  Aligned_cols=278  Identities=16%  Similarity=0.189  Sum_probs=152.5

Q ss_pred             CCCeEEEEEecccccccCceEEEEecCCCCCc-ceeeeeecCCCCeeEEEecC---CCCCeEEEEEcCCeEEEEEeCCCC
Q 021121           19 YESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LTELVAFDTADGVYDLAWSE---SHDSLLIAAVADGSVKIYDTALPP   94 (317)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~v~~~~~~~   94 (317)
                      +.+++++++.       .|.++||+....+.. ...+...+...+|..++.-+   ..+...++.-.-..+.+|.+....
T Consensus        36 ~~d~IivGS~-------~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~  108 (418)
T PF14727_consen   36 GSDKIIVGSY-------SGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD  108 (418)
T ss_pred             CccEEEEecc-------ccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Confidence            3456666655       899999998665422 23444446778899888653   222333344567889999984331


Q ss_pred             CC------CCceeeccC--CcceEEEEEecC----CCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           95 TA------NPIRSLHEH--TREVHSADYNPT----RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        95 ~~------~~~~~~~~~--~~~v~~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ..      ..+.....|  ......+++-|-    ++.++.+-+.||.+.+++-+.-...+.+.. ---...+.+.+. .
T Consensus       109 g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~-t  186 (418)
T PF14727_consen  109 GTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPR-T  186 (418)
T ss_pred             CCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeec-C
Confidence            11      111222223  233344444332    346888999999999999765443334433 233456778887 7


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCc-----------------ee------eeccCccc---eEEEEecCCCCcEEEEEecCCc
Q 021121          163 DVFCSASGDCTLRIWDVREMGS-----------------TM------IIPAHEFE---ILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~-----------------~~------~~~~~~~~---v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      +.|++++.+..+.-|..+....                 .+      ++. -...   +..+.++......++.|  ...
T Consensus       187 Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~  263 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERS  263 (418)
T ss_pred             CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cce
Confidence            8888999888888887532100                 00      111 1112   33333433123334333  345


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEE-e------cCCCCeeEEeeecCCeEEEEecccccceeeeeecccce--eEeEE
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVK-F------SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF--AVGVD  287 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~-~------~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--v~~~~  287 (317)
                      +.+.+... .  +...+.......+++ |      .|.....++.++.++++.||.=.+   +.-.-.....+  |.-..
T Consensus       264 Lf~l~~~G-~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~---L~WsA~l~~~PVal~v~~  337 (418)
T PF14727_consen  264 LFCLKDNG-S--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT---LVWSAQLPHVPVALSVAN  337 (418)
T ss_pred             EEEEcCCC-e--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe---EEEecCCCCCCEEEEecc
Confidence            66665532 2  222222222222222 1      223222477888999999986322   22111111222  22222


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      |... ..+|++-+.+|.+.+-=+.++|.
T Consensus       338 ~~~~-~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  338 FNGL-KGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             cCCC-CceEEEEcCCCcEEEEEeCCCCc
Confidence            3333 66999999999999999988875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.93  E-value=0.008  Score=49.38  Aligned_cols=281  Identities=14%  Similarity=0.067  Sum_probs=129.6

Q ss_pred             EEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC
Q 021121           14 KFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP   93 (317)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~   93 (317)
                      +|.++ ..+++.++...    +...+++.|+.+..  ...+..... .......++|++ +.++-......|.-.|+++.
T Consensus        42 ~ft~d-G~kllF~s~~d----g~~nly~lDL~t~~--i~QLTdg~g-~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~  112 (386)
T PF14583_consen   42 CFTDD-GRKLLFASDFD----GNRNLYLLDLATGE--ITQLTDGPG-DNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTL  112 (386)
T ss_dssp             -B-TT-S-EEEEEE-TT----SS-EEEEEETTT-E--EEE---SS--B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT-
T ss_pred             CcCCC-CCEEEEEeccC----CCcceEEEEcccCE--EEECccCCC-CCccceEEecCC-CeEEEEECCCeEEEEECCcC
Confidence            56774 34666655531    24466777776654  333332211 223356677876 45554445567888888765


Q ss_pred             CCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-----------------------CCEEEEEEcCCCceeEEeecccc
Q 021121           94 PTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-----------------------DDTVKLWTVDRPTSVRTFKEHAY  150 (317)
Q Consensus        94 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------dg~v~iwd~~~~~~~~~~~~~~~  150 (317)
                         +....+.....-+-...|..+.....+++..                       ...|.-.|+.+++....+. ...
T Consensus       113 ---e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~  188 (386)
T PF14583_consen  113 ---EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTD  188 (386)
T ss_dssp             ----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS
T ss_pred             ---cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCc
Confidence               3333444444555445664222112333311                       2456666777776554444 566


Q ss_pred             ceEEEEEecCCCCeEEEEeC---CC-eEEEEeCCCC-CceeeeccC--ccceEEEEecCCCCcEEEEEe-----cCCcEE
Q 021121          151 CVYNATWNPRHSDVFCSASG---DC-TLRIWDVREM-GSTMIIPAH--EFEILACDWNKYDDCLIASAS-----VDKSIK  218 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~---dg-~i~i~d~~~~-~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~-----~d~~i~  218 (317)
                      .+..+.|+|.++.+|+-|-+   +. .-++|-+++. .....+..+  ...+..=-|.| +|..|.--+     .+..|.
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~  267 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIA  267 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEE
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEE
Confidence            78899999997888777644   22 1356655432 223333222  23345556888 776655432     234577


Q ss_pred             EEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC----------------eEEEEecccccceeeeeeccc--
Q 021121          219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM----------------TVCLWDFMVEDALVGRYDHHT--  280 (317)
Q Consensus       219 v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----------------~i~vwd~~~~~~~~~~~~~~~--  280 (317)
                      -+|..+.+..  .+. ...+...+..+++++ +++-=+.|.                .|.++++..+..  ..+..|.  
T Consensus       268 ~~d~~t~~~~--~~~-~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--~~l~~h~~s  341 (386)
T PF14583_consen  268 GYDPDTGERR--RLM-EMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF--RKLARHDTS  341 (386)
T ss_dssp             EE-TTT--EE--EEE-EE-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEE--EEEEE----
T ss_pred             eeCCCCCCce--EEE-eCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCce--eeeeeccCc
Confidence            7777776531  221 112344666778887 444322221                456677765541  1112121  


Q ss_pred             --------c-eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          281 --------E-FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       281 --------~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                              . .=....|+||+..+|.++...|...||-++.++
T Consensus       342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~  384 (386)
T PF14583_consen  342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD  384 (386)
T ss_dssp             ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred             ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence                    1 124579999976788888899998888776543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00063  Score=56.97  Aligned_cols=204  Identities=12%  Similarity=0.055  Sum_probs=118.7

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-------CC-CCeeEEEecCCCCCeEEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-------TA-DGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-------~~-~~v~~~~~~~~~~~~l~~~   79 (317)
                      ..+.++++..- ++.+++.+..+.-+.++.++-|+.-. .+  +.......       +. .+-..|-...+.+-+|..+
T Consensus       277 ~~i~sl~~~a~-~NS~Lvv~~~ns~V~Rn~~iGVfk~e-kg--l~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~  352 (644)
T KOG2395|consen  277 GGIGSLDEGAL-DNSFLVVGYGNSYVTRNNRIGVFKNE-KG--LEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDG  352 (644)
T ss_pred             cccchhhhccc-CCceEEecccceEEEecceeeeeccC-Cc--eEEEeccCcccCCCccccCcchhhhhccccceEeeCC
Confidence            44556666653 45666666543333445555555532 11  11110000       00 1111222333433345555


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCC------EEEEEcCCCEEEEEEcCCCce--eEEeecc---
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD------SFITSSWDDTVKLWTVDRPTS--VRTFKEH---  148 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~dg~v~iwd~~~~~~--~~~~~~~---  148 (317)
                      .....++-.|++.+   +.+....-+.. |+-+.+.|+.+.      .-+.|-.|..|.-||++-...  +..-+.|   
T Consensus       353 ~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  353 GEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             CCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            55666777888776   66666665554 666777776431      234566688999999874322  1111222   


Q ss_pred             -ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          149 -AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       149 -~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                       .....|.+-..  ..++++|+.+|.|++||--.......+++...+|..+..+. +|++|+..+ +..+.+.++.
T Consensus       429 ~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  429 TKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccceeeecC--CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEec-ccEEEEEEEe
Confidence             23455665554  45788999999999999744455566788889999999998 888877655 5566666654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.89  E-value=0.0046  Score=54.67  Aligned_cols=219  Identities=12%  Similarity=0.114  Sum_probs=117.0

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------CeEEEEEeCCCCCCCCceeeccCCcceE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------GSVKIYDTALPPTANPIRSLHEHTREVH  110 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~~~~~v~  110 (317)
                      ..+..||.....  ............-.+++...+  .+.++|+.+      ..+..||.... ++.....+........
T Consensus       301 ~~ve~yd~~~~~--w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~-~W~~~a~M~~~R~~~~  375 (571)
T KOG4441|consen  301 RSVECYDPKTNE--WSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTN-QWTPVAPMNTKRSDFG  375 (571)
T ss_pred             ceeEEecCCcCc--EeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCC-ceeccCCccCccccce
Confidence            467888877663  344444445555566666653  588888888      35677777654 3444444443333322


Q ss_pred             EEEEecCCCCEEEEEcCCCE-----EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC------eEEEEeC
Q 021121          111 SADYNPTRRDSFITSSWDDT-----VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC------TLRIWDV  179 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~  179 (317)
                      ....  +|. +.++|+.||.     +-.||..+.+-...-. ............-++.+.++|+.++      ++..||.
T Consensus       376 v~~l--~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP  451 (571)
T KOG4441|consen  376 VAVL--DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP  451 (571)
T ss_pred             eEEE--CCE-EEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence            2222  244 8888888864     7778877653221111 1112222222222377888887554      4678888


Q ss_pred             CCCC--ceeeeccCccceEEEEecCCCCcEEEEEecCCc-----EEEEEccCCCccEEE-EecCCCceeEEEecCCCCee
Q 021121          180 REMG--STMIIPAHEFEILACDWNKYDDCLIASASVDKS-----IKIWDVRNYRVPIAV-LNGHGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       180 ~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  251 (317)
                      .+.+  .+..+........ ++.-  ++.+++.|+.|+.     +..||.++.+-.... .......+....+  ++. +
T Consensus       452 ~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-l  525 (571)
T KOG4441|consen  452 ETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-L  525 (571)
T ss_pred             CCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-E
Confidence            7653  2222222222222 3322  6788888887763     777888775421111 1112222222222  343 6


Q ss_pred             EEeeecCCe-----EEEEeccccc
Q 021121          252 LASCSYDMT-----VCLWDFMVED  270 (317)
Q Consensus       252 l~~~~~d~~-----i~vwd~~~~~  270 (317)
                      .+.|+.||.     |..||..+.+
T Consensus       526 y~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  526 YAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEEecccCccccceeEEcCCCCCc
Confidence            788887763     6667666554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.86  E-value=0.009  Score=47.87  Aligned_cols=229  Identities=14%  Similarity=0.156  Sum_probs=124.5

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI   99 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~   99 (317)
                      +..+++++.       +| ++++++..... ...+   .....|..+...|+-+ .|++-+ |+.+.++++..-......
T Consensus         7 ~~~L~vGt~-------~G-l~~~~~~~~~~-~~~i---~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    7 GDRLLVGTE-------DG-LYVYDLSDPSK-PTRI---LKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             CCEEEEEEC-------CC-EEEEEecCCcc-ceeE---eecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccc
Confidence            456666654       66 99999932221 1111   2333499999998764 444443 599999998764222211


Q ss_pred             ee-----------eccCCcceEEEE--EecCCCCEEEEEcCCCEEEEEEcCCC-----ceeEEeeccccceEEEEEecCC
Q 021121          100 RS-----------LHEHTREVHSAD--YNPTRRDSFITSSWDDTVKLWTVDRP-----TSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus       100 ~~-----------~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ..           .......+...+  -...+...++.+. ...|.+|.....     +..+.+. -...+..++|.   
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---  147 (275)
T PF00780_consen   73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---  147 (275)
T ss_pred             ccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---
Confidence            00           111223344444  1123332444444 458998887653     3444554 45779999998   


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccC------------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAH------------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI  229 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  229 (317)
                      ++.++.|..+ ...+.|+.++.....+...            ..++..+...  ++.+|++-  +..-.+.|... +...
T Consensus       148 ~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G-~~~r  221 (275)
T PF00780_consen  148 GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNG-EPSR  221 (275)
T ss_pred             CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCC-CcCc
Confidence            4566666654 4788999876554333211            1233333333  34455442  33333444433 3212


Q ss_pred             -EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          230 -AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       230 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                       ..+.- ......+++.  .+ +|++.. ++.|.||++.+++ +++.+...
T Consensus       222 ~~~i~W-~~~p~~~~~~--~p-yli~~~-~~~iEV~~~~~~~-lvQ~i~~~  266 (275)
T PF00780_consen  222 KSTIQW-SSAPQSVAYS--SP-YLIAFS-SNSIEVRSLETGE-LVQTIPLP  266 (275)
T ss_pred             ccEEEc-CCchhEEEEE--CC-EEEEEC-CCEEEEEECcCCc-EEEEEECC
Confidence             23332 2355667774  34 455544 4569999999986 55665543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0012  Score=59.98  Aligned_cols=100  Identities=15%  Similarity=0.295  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      ..++.|+..|.+...|+...  ..+...-..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..+..+.+
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            47888999999999887642  222222233468999999999998 899999999999999999999988877666555


Q ss_pred             EEE---EecCCCCeEEEEeCCCeEEEEeC
Q 021121          154 NAT---WNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       154 ~~~---~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      .+-   +..+ +..++++...|.  +|.+
T Consensus       177 ~vi~v~~t~~-nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQ-NSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCC-CcEEEEccCCCc--eEEE
Confidence            443   3444 446778877776  4544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.81  E-value=0.0044  Score=52.97  Aligned_cols=155  Identities=11%  Similarity=0.220  Sum_probs=96.6

Q ss_pred             CCcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCCceeEEeeccccceEEEEEecCC---CCeEEEEeCCCeEEEEeC
Q 021121          105 HTREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH---SDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       105 ~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~  179 (317)
                      --.++..++|. ||++.+++.-  .+|.+++=|   ...+..|.    -|..+.|.|-.   ...+++.-....|.+|.+
T Consensus        18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            34578889997 5554666653  344444322   22333333    38899999851   223445566788999998


Q ss_pred             CC-----CCceeeecc---Cccc--eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCC
Q 021121          180 RE-----MGSTMIIPA---HEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR  249 (317)
Q Consensus       180 ~~-----~~~~~~~~~---~~~~--v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (317)
                      ..     .+.+.....   ...+  ...+.|+| ....|++-.....-.+++++.....+..-....+-|.|.+|.+||+
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ  168 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence            62     222222111   1112  24678999 7777777666555567787766554554445567899999999999


Q ss_pred             eeEEeeecCCeEEEEeccc
Q 021121          250 NLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       250 ~~l~~~~~d~~i~vwd~~~  268 (317)
                      +++++.+..=.-++||-..
T Consensus       169 RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEEeCCeEEEEEecCch
Confidence            8777776666678898543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.78  E-value=0.0059  Score=54.00  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=117.4

Q ss_pred             CCeEEEEEcCC------eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC------CEEEEEEcCCCc
Q 021121           73 DSLLIAAVADG------SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD------DTVKLWTVDRPT  140 (317)
Q Consensus        73 ~~~l~~~~~dg------~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~  140 (317)
                      +.+++.|+.++      .+..||..+. .+.....+.. ...-.+++...+ . +.++|+.|      ..+..||..+.+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~-~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPS-PRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCc-ccccccEEEECC-E-EEEEccccCCCcccceEEEecCCCCc
Confidence            35777777763      5777887654 2333333332 223344555433 3 78888888      357788887765


Q ss_pred             eeEEeeccccceEEEEEecCCCCeEEEEeCCCe-----EEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT-----LRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      -.. +..-..+-.......-++.+.++|+.||.     +..||.++.+=  ...+..   ..........++.+.++|+.
T Consensus       361 W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  361 WTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             eec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEcCc
Confidence            222 21111111111112223788889998865     77788776431  221221   22222222227888888886


Q ss_pred             CC------cEEEEEccCCCcc-EEEEecCCCceeEEEecCCCCeeEEeeecCCe-----EEEEecccccceeeeeecccc
Q 021121          214 DK------SIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-----VCLWDFMVEDALVGRYDHHTE  281 (317)
Q Consensus       214 d~------~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~vwd~~~~~~~~~~~~~~~~  281 (317)
                      ++      ++..||..+..-. +.......... .++.- ++. +.+.||.|+.     |..||..+.+-..  ...-..
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~--v~~m~~  511 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGK-IYVVGGFDGTSALSSVERYDPETNQWTM--VAPMTS  511 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCE-EEEECCccCCCccceEEEEcCCCCceeE--cccCcc
Confidence            64      4678887765410 00111111111 13332 344 7888887763     7778888776221  121122


Q ss_pred             eeEeEEEEeccCCeEEEeecCC-----cEEEEecCC
Q 021121          282 FAVGVDMSVLVEGLLASTGWDE-----LVYVWQQGM  312 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~~~dg-----~i~~w~~~~  312 (317)
                      +.........++.+.+.||.||     +|..||..+
T Consensus       512 ~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  512 PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence            2222333333367888888776     455555443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.76  E-value=0.02  Score=48.91  Aligned_cols=248  Identities=15%  Similarity=0.145  Sum_probs=125.8

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC-------
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG-------   83 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------   83 (317)
                      ...++||+ ..+++.+.+..  ......++++|+.++......+   ... .-..+.|.+++..++.+...+.       
T Consensus       127 ~~~~~Spd-g~~la~~~s~~--G~e~~~l~v~Dl~tg~~l~d~i---~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  127 GGFSVSPD-GKRLAYSLSDG--GSEWYTLRVFDLETGKFLPDGI---ENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEETTT-SSEEEEEEEET--TSSEEEEEEEETTTTEEEEEEE---EEE-ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeeECCC-CCEEEEEecCC--CCceEEEEEEECCCCcCcCCcc---ccc-ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            35778885 34455554431  0012359999998874211111   111 1223999999865555554332       


Q ss_pred             ---eEEEEEeCCCCCCCCceeeccCCcc--eEEEEEecCCCCEEEEEcC--C-CEEEEEEcCCC----ceeEEeeccccc
Q 021121           84 ---SVKIYDTALPPTANPIRSLHEHTRE--VHSADYNPTRRDSFITSSW--D-DTVKLWTVDRP----TSVRTFKEHAYC  151 (317)
Q Consensus        84 ---~i~v~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~--d-g~v~iwd~~~~----~~~~~~~~~~~~  151 (317)
                         .|..|++.++. ......+......  ...+..+++++.+++....  + ..+.+.++..+    .....+......
T Consensus       200 ~~~~v~~~~~gt~~-~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~  278 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQ-SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG  278 (414)
T ss_dssp             CCEEEEEEETTS-G-GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred             CCcEEEEEECCCCh-HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence               25666665431 1112334433333  5678889999844443332  2 45888888764    233333333333


Q ss_pred             e-EEEEEecCCCCeEEEE---eCCCeEEEEeCCCCCc---eeeeccCcc--ceEEEEecCCCCcEEEEEecCC--cEEEE
Q 021121          152 V-YNATWNPRHSDVFCSA---SGDCTLRIWDVREMGS---TMIIPAHEF--EILACDWNKYDDCLIASASVDK--SIKIW  220 (317)
Q Consensus       152 v-~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~--~i~v~  220 (317)
                      + ..+... . +.+++..   ...+.|.-.++.+...   ...+..+..  .+..+...  .+.+++....++  .|+++
T Consensus       279 ~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  279 VEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             -EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEE
Confidence            3 334333 2 4444433   2346777788877653   223444444  34555443  445555555555  48888


Q ss_pred             EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec---CCeEEEEeccccc
Q 021121          221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY---DMTVCLWDFMVED  270 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~vwd~~~~~  270 (317)
                      ++............-.+.|..+...+++..+.++.+.   -+++..||+.+++
T Consensus       355 ~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  355 DLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             ETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             ECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            8882222222222234456677766777666655553   2467888888776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.73  E-value=0.00013  Score=38.09  Aligned_cols=38  Identities=32%  Similarity=0.573  Sum_probs=32.6

Q ss_pred             ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121          140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD  178 (317)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (317)
                      +....+..|...+.++.|.+. ...+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence            445666778889999999998 68999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.013  Score=45.67  Aligned_cols=240  Identities=15%  Similarity=0.148  Sum_probs=128.3

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCc-eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNG-RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---   82 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---   82 (317)
                      +.....+.|+|.....++.+--       -| -..++|.+.... ...+.......---.=.|||||. +|.+.-+|   
T Consensus        67 paR~Hgi~~~p~~~ravafARr-------PGtf~~vfD~~~~~~-pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~  137 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARR-------PGTFAMVFDPNGAQE-PVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDP  137 (366)
T ss_pred             ccccCCeecCCCCcceEEEEec-------CCceEEEECCCCCcC-cEEEecccCceeecccccCCCCc-EEEeecCCCCC
Confidence            4455678888853333333322       33 457888877653 22222111111112236999994 66655443   


Q ss_pred             --CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC------------------CCEEEEEEcCCCcee
Q 021121           83 --GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW------------------DDTVKLWTVDRPTSV  142 (317)
Q Consensus        83 --g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~  142 (317)
                        |.|-|||...  ....+..+..|.-.-..+.|.+||+ .++.+..                  .-++.+.|..+++.+
T Consensus       138 ~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li  214 (366)
T COG3490         138 NRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI  214 (366)
T ss_pred             CCceEEEEeccc--ccceecccccCCcCcceeEEecCCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence              7899999873  3556667778888888899999998 5555432                  112333343344333


Q ss_pred             EEee----ccccceEEEEEecCCCCeEEEEeCCCe-----EEEEeCCCCCceeeec-------cCccceEEEEecCCCCc
Q 021121          143 RTFK----EHAYCVYNATWNPRHSDVFCSASGDCT-----LRIWDVREMGSTMIIP-------AHEFEILACDWNKYDDC  206 (317)
Q Consensus       143 ~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~  206 (317)
                      .+..    .+.-.+..++..++ +.+.+.+-..|.     -.+=-.+.++++..+.       .....|-+++.+..++-
T Consensus       215 ekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl  293 (366)
T COG3490         215 EKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL  293 (366)
T ss_pred             hhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence            3221    22345666776666 444443322221     1111112233333332       12345778888874555


Q ss_pred             EEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       207 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      ..++.-..+...+||..++.. +.. ..- .....++-...+   ++..+.+|.+.++.
T Consensus       294 V~lTSP~GN~~vi~da~tG~v-v~~-a~l-~daaGva~~~~g---f~vssg~G~~~~~s  346 (366)
T COG3490         294 VALTSPRGNRAVIWDAATGAV-VSE-AAL-PDAAGVAAAKGG---FAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEecCCCCeEEEEEcCCCcE-Eec-ccc-cccccceeccCc---eEEecCCceEEecc
Confidence            556666667789999999864 222 111 122233333222   45556688888774

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.73  E-value=0.019  Score=47.76  Aligned_cols=231  Identities=15%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             eEEEEecCCCCCcceeee-e--ecC-CCCeeEEEec-----C-----CCCCeEEEEE-cCCeEEEEEeCCCCCC-CCcee
Q 021121           38 RVHVLDLSPAAPALTELV-A--FDT-ADGVYDLAWS-----E-----SHDSLLIAAV-ADGSVKIYDTALPPTA-NPIRS  101 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~-~--~~~-~~~v~~~~~~-----~-----~~~~~l~~~~-~dg~i~v~~~~~~~~~-~~~~~  101 (317)
                      .+-..|+++..+...++. .  ..+ .......-|+     +     ...++|+..+ ..++|.|.|+.+.... +..+.
T Consensus        38 ~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv  117 (461)
T PF05694_consen   38 YLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV  117 (461)
T ss_dssp             EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE
T ss_pred             eEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee
Confidence            566777776654332221 1  122 2345555554     1     1234555555 7789999999854222 22222


Q ss_pred             ecc---CC----cceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEEeecc---ccceEEEEEecCCCCeE
Q 021121          102 LHE---HT----REVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRTFKEH---AYCVYNATWNPRHSDVF  165 (317)
Q Consensus       102 ~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l  165 (317)
                      ++.   +.    ..-..+..-|+|. +++++-      ..|-+.++|-++.+........   ...-+.+-|.|. .+.+
T Consensus       118 Ie~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr-~nvM  195 (461)
T PF05694_consen  118 IEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR-HNVM  195 (461)
T ss_dssp             E-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT-TTEE
T ss_pred             eCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC-CCEE
Confidence            221   11    2233455567777 777752      2367888888877777666532   234567888887 6777


Q ss_pred             EEEe--------------------CCCeEEEEeCCCCCceeeeccCc--cceEEEEec--CCCCcEEEEEecCCcEEEEE
Q 021121          166 CSAS--------------------GDCTLRIWDVREMGSTMIIPAHE--FEILACDWN--KYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       166 ~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~--~~v~~i~~~--~~~~~~l~~~~~d~~i~v~d  221 (317)
                      ++..                    ...++.+||+.+.+.++.+.-.+  .....+.|.  |....-++.+.-..+|..|-
T Consensus       196 iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~  275 (461)
T PF05694_consen  196 ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY  275 (461)
T ss_dssp             EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred             EEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence            7653                    24679999999999888876432  234566664  42223344444445555543


Q ss_pred             c-cCCCc---cEEEEec-----C------------CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          222 V-RNYRV---PIAVLNG-----H------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       222 ~-~~~~~---~~~~~~~-----~------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      . ..++-   .+..+..     -            ..-|+.|..|.|.+.+.++.=..|.|+.||+....
T Consensus       276 k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  276 KDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             E-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             EcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            3 32221   1111111     0            23578999999999766667789999999998865

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.0042  Score=48.47  Aligned_cols=166  Identities=9%  Similarity=0.084  Sum_probs=107.1

Q ss_pred             eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-ccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          146 KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-EFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      .+-...+.++.|+|+ .+.|++..+...-.++=..+|+.+.+++-. -...-.+++.. ++++.++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence            344556999999999 666666666666666655677777776521 22345677776 777777777788888887765


Q ss_pred             CCcc---------EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee--eeeecc-------cceeEeE
Q 021121          225 YRVP---------IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV--GRYDHH-------TEFAVGV  286 (317)
Q Consensus       225 ~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~-------~~~v~~~  286 (317)
                      ....         +......+...-.++|+|.... |..+-+-.=+.||.+.......  .....+       -..|.++
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            4321         1111122567789999999885 5556666667777765433111  011111       2347788


Q ss_pred             EEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          287 DMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       287 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .|.+..+.+|+-+..++.+.--+...++
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCCe
Confidence            8988767788888888888877776654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.70  E-value=0.019  Score=51.02  Aligned_cols=187  Identities=12%  Similarity=0.056  Sum_probs=102.0

Q ss_pred             CcceEEEEEecCCCCEEEEEc-----CCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC--------
Q 021121          106 TREVHSADYNPTRRDSFITSS-----WDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG--------  170 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~-----~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------  170 (317)
                      ...+...+++|+|....++..     .|.  .|.+++.. +.. ..+... ...+.-.|+|+ +..+++...        
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspD-G~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLD-ADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCC-CCceEEEecCcceEEEe
Confidence            346788999999984444441     233  45555542 222 333222 23788899998 554544432        


Q ss_pred             ----CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEE---EEccCCCccE----EEEecCCCce
Q 021121          171 ----DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI---WDVRNYRVPI----AVLNGHGYAV  239 (317)
Q Consensus       171 ----dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v---~d~~~~~~~~----~~~~~~~~~v  239 (317)
                          .+.+.+.+++.++...   .....|..+.|+| ++..++... ++.|++   -....+...+    .....-...+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                2334444544433322   2345799999999 888877765 467766   3323332111    1112233346


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVY  306 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~  306 (317)
                      .++.|.+++. ++ .+..++.-.+|.+.-.......+..  ...++..++-++.   .++....+|.+.
T Consensus       500 ~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~~  563 (591)
T PRK13616        500 VSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS---TVYVTDARAVLQ  563 (591)
T ss_pred             ccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc---eEEEEcCCceEE
Confidence            8899999987 44 4444554555655433322112122  2456777776652   355556666443

>smart00320 WD40 WD40 repeats

Probab=97.69  E-value=0.00011  Score=38.39  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=31.7

Q ss_pred             CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      +...+..|...|.++.|.+.+. .+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            4455667888999999999886 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.66  E-value=0.025  Score=47.13  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC-----C---CCeeEEEecCCCCCeEEEEEcC------CeE
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-----A---DGVYDLAWSESHDSLLIAAVAD------GSV   85 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-----~---~~v~~~~~~~~~~~~l~~~~~d------g~i   85 (317)
                      +.++++..+-.     +++|+|+|+.+.....+.....+.     +   ..-..+---|+| .+++++-.|      |-+
T Consensus        86 ~Rr~Li~PgL~-----SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf  159 (461)
T PF05694_consen   86 ERRYLILPGLR-----SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGF  159 (461)
T ss_dssp             -S-EEEEEBTT-----T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EE
T ss_pred             cCCcEEeeeec-----cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcE
Confidence            45555555532     889999999855432222222211     0   111122223566 466664322      456


Q ss_pred             EEEEeCCCCCCCCceeecc---CCcceEEEEEecCCCCEEEEEcC--------------------CCEEEEEEcCCCcee
Q 021121           86 KIYDTALPPTANPIRSLHE---HTREVHSADYNPTRRDSFITSSW--------------------DDTVKLWTVDRPTSV  142 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~--------------------dg~v~iwd~~~~~~~  142 (317)
                      .++|-++.   +.......   ...--..+.|.|..+ .++|...                    ..++.+||+.+.+.+
T Consensus       160 ~llD~~tf---~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~  235 (461)
T PF05694_consen  160 VLLDGETF---EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL  235 (461)
T ss_dssp             EEE-TTT-----EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred             EEEcCccc---cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence            66665432   22222222   223445677788655 7776632                    368999999999999


Q ss_pred             EEeeccc--cceEEEEEecC--CCCeEEEEeCCCeEEEEeC-CCCC----ceeeeccC-----------------ccceE
Q 021121          143 RTFKEHA--YCVYNATWNPR--HSDVFCSASGDCTLRIWDV-REMG----STMIIPAH-----------------EFEIL  196 (317)
Q Consensus       143 ~~~~~~~--~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~-~~~~----~~~~~~~~-----------------~~~v~  196 (317)
                      +++.-..  ..+..+.|..+  ...-++.+...++|..|-- +.++    .+..+...                 ..-++
T Consensus       236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit  315 (461)
T PF05694_consen  236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT  315 (461)
T ss_dssp             EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred             eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence            9887433  34667777654  2234555555666665543 3321    12222110                 23368


Q ss_pred             EEEecCCCCcEE-EEEecCCcEEEEEccCCCccEEEEe---c---------------CCCceeEEEecCCCCeeEEeee
Q 021121          197 ACDWNKYDDCLI-ASASVDKSIKIWDVRNYRVPIAVLN---G---------------HGYAVRKVKFSPHRRNLLASCS  256 (317)
Q Consensus       197 ~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~---~---------------~~~~v~~~~~~~~~~~~l~~~~  256 (317)
                      .|..|. +.++| +++-..|.|+.||+.....+...-+   +               -.+...-+..|-||+++.+|.|
T Consensus       316 DI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  316 DILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            888998 55555 5555789999999998766544321   1               0123356788888987666655

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.66  E-value=0.02  Score=46.04  Aligned_cols=278  Identities=12%  Similarity=0.026  Sum_probs=124.1

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC---CCCeeEEEecCCCCCeEEEEEc
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT---ADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ....++.+|.|... +.-+++ +.       .|.  |+.........+.......   .-...++.|..+  ..+++| .
T Consensus        14 ~t~~~l~dV~F~d~-~~G~~V-G~-------~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG-~   79 (302)
T PF14870_consen   14 PTDKPLLDVAFVDP-NHGWAV-GA-------YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVG-E   79 (302)
T ss_dssp             S-SS-EEEEEESSS-S-EEEE-ET-------TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEE-E
T ss_pred             CCCCceEEEEEecC-CEEEEE-ec-------CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEc-C
Confidence            34567889999852 333444 33       343  4555555544443332111   123667777643  345554 4


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-eeccccceEEEEEecC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPR  160 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~  160 (317)
                      .+ +.+...+.++..+.+..-..-.+....+....++. .++ ++..|.|.. ..+.++.-+. .....+.+..+.-+++
T Consensus        80 ~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~d  155 (302)
T PF14870_consen   80 PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSD  155 (302)
T ss_dssp             TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred             Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCC
Confidence            55 33333343433333321111223334444444433 333 344455433 2233433222 2334567888888888


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE----EecCC
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV----LNGHG  236 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~  236 (317)
                       +.+++++.....+.-||.-...-...-......+.++.|.| ++.+.+++ ..|.|+.=+..........    .....
T Consensus       156 -G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~  232 (302)
T PF14870_consen  156 -GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG  232 (302)
T ss_dssp             -S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred             -CcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence             78887776666666777543222222223457799999999 77766654 7888888762211111111    11223


Q ss_pred             CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee--eecccceeEeEEEEeccCCeEEEeecCCcEEEE
Q 021121          237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR--YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW  308 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w  308 (317)
                      ..+..++|.+++. +.++|+ .|.+. .....++.-.+.  ...-...++.|.|.+.  +.-..-+.+|.|.-|
T Consensus       233 ~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  233 YGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred             eeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence            3578999999876 565554 55443 334444422222  1233456889999874  444455678887655

>PHA02713 hypothetical protein; Provisional

Probab=97.66  E-value=0.0061  Score=53.94  Aligned_cols=182  Identities=8%  Similarity=0.082  Sum_probs=91.1

Q ss_pred             CCCCEEEEEcCC------CEEEEEEcCCCcee--EEeeccccceEEEEEecCCCCeEEEEeCCC-----eEEEEeCCCCC
Q 021121          117 TRRDSFITSSWD------DTVKLWTVDRPTSV--RTFKEHAYCVYNATWNPRHSDVFCSASGDC-----TLRIWDVREMG  183 (317)
Q Consensus       117 ~~~~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  183 (317)
                      ++. +++.|+.+      ..+..||+.+.+-.  ..+...........+   ++.+.+.||.++     .+..||..+.+
T Consensus       303 ~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            344 67777753      35778888766321  111111111222222   267777887654     47889987642


Q ss_pred             --ceeeeccCccceEEEEecCCCCcEEEEEecCC-----------------------cEEEEEccCCCccEEEEec---C
Q 021121          184 --STMIIPAHEFEILACDWNKYDDCLIASASVDK-----------------------SIKIWDVRNYRVPIAVLNG---H  235 (317)
Q Consensus       184 --~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----------------------~i~v~d~~~~~~~~~~~~~---~  235 (317)
                        .+..+.........+..   ++.+.+.|+.++                       .+..||.++.+-  .....   .
T Consensus       379 W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v~~m~~~  453 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETLPNFWTG  453 (557)
T ss_pred             EEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eecCCCCcc
Confidence              11122211111112221   677888887652                       477788766431  11111   1


Q ss_pred             CCceeEEEecCCCCeeEEeeecC------CeEEEEeccc-cc-ceeeeeecccceeEeEEEEeccCCeEEEeecCC--cE
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYD------MTVCLWDFMV-ED-ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE--LV  305 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d------~~i~vwd~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i  305 (317)
                      .... +++.. +++ +.+.|+.+      ..+..||..+ .+ ..+..+....... +++..  ++.+.+.||.||  .+
T Consensus       454 r~~~-~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~--~~~iyv~Gg~~~~~~~  527 (557)
T PHA02713        454 TIRP-GVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH--DNTIMMLHCYESYMLQ  527 (557)
T ss_pred             cccC-cEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE--CCEEEEEeeecceeeh
Confidence            1111 22222 454 66667654      2467899887 44 1222333222222 22222  277889999888  67


Q ss_pred             EEEecCCC
Q 021121          306 YVWQQGMD  313 (317)
Q Consensus       306 ~~w~~~~~  313 (317)
                      ..||..++
T Consensus       528 e~yd~~~~  535 (557)
T PHA02713        528 DTFNVYTY  535 (557)
T ss_pred             hhcCcccc
Confidence            77777654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.021  Score=46.14  Aligned_cols=222  Identities=12%  Similarity=0.121  Sum_probs=128.4

Q ss_pred             EecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee
Q 021121           67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK  146 (317)
Q Consensus        67 ~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  146 (317)
                      .|.++...++.+--..+.|.-|+..++    ....+. +.+.+.++.....+. .|+++..  -+.+++.+++..+..+.
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g----~~~~~~-~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETG----KKRVFP-SPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKITLLA  102 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcC----ceEEEE-CCCCcccceeecCCC-eEEEEcc--ccEEEeccCCceeEEec
Confidence            577776556667677788888887643    222222 233445544444444 4555543  35566666555433322


Q ss_pred             c-----cccceEEEEEecCCCCeEEEEeC-----------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121          147 E-----HAYCVYNATWNPRHSDVFCSASG-----------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       147 ~-----~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      .     .....+.....|+ +.+.++...           -|.|+.+|. .+...+.+..+-...+.++||| +++.+..
T Consensus       103 ~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~  179 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYV  179 (307)
T ss_pred             cccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEE
Confidence            1     1245677888888 555544322           144555554 4555555555455668999999 7765555


Q ss_pred             E-ecCCcEEEEEccC--C----CccEEEEecCCCceeEEEecCCCCeeEEeeecCC-eEEEEecccccceeeeeecccce
Q 021121          211 A-SVDKSIKIWDVRN--Y----RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM-TVCLWDFMVEDALVGRYDHHTEF  282 (317)
Q Consensus       211 ~-~~d~~i~v~d~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~  282 (317)
                      + +..+.|..|++..  .    +..........+..-.++...+|. +-+++..+| .|.+|+.. ++ ++..+.-....
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~  256 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GK-LLGEIKLPVKR  256 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-Cc-EEEEEECCCCC
Confidence            5 4457888887752  1    111222223445566788888887 343444443 89999987 54 55666666577


Q ss_pred             eEeEEEEe-ccCCeEEEeecC
Q 021121          283 AVGVDMSV-LVEGLLASTGWD  302 (317)
Q Consensus       283 v~~~~~~~-~~~~~l~s~~~d  302 (317)
                      +++++|-- +...+++++...
T Consensus       257 ~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         257 PTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             CccceEeCCCcCEEEEEecCC
Confidence            88888864 323355555544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.64  E-value=0.047  Score=49.78  Aligned_cols=154  Identities=8%  Similarity=0.191  Sum_probs=101.5

Q ss_pred             eEEEEEecCCCCeEEEEeC----------CCeEEEEeCCCCCceeeeccC--ccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          152 VYNATWNPRHSDVFCSASG----------DCTLRIWDVREMGSTMIIPAH--EFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      +.+..|..+.+.++++|+.          .|.|.+|.....+.+.....+  ++.+.++..  .+++++|.  -+..|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEEEE
Confidence            4555577775667777652          578888888774444443322  334444443  35666654  4578999


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee--eeeecccceeEeEEEEeccCCeEE
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV--GRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      |+..+.+. ++.-..+..++..+...-.+. .++.|.--+++.+...+..+...  ..-.-+....+++.+-.  +..++
T Consensus       853 ye~t~~~e-Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~--~d~yl  928 (1096)
T KOG1897|consen  853 YEWTTERE-LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD--DDTYL  928 (1096)
T ss_pred             EEccccce-ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec--CceEE
Confidence            99988653 555566777888888888888 69999988888887766554222  22234566778887775  45666


Q ss_pred             EeecCCcEEEEecCCC
Q 021121          298 STGWDELVYVWQQGMD  313 (317)
Q Consensus       298 s~~~dg~i~~w~~~~~  313 (317)
                      .+..+|.+.+-..+..
T Consensus       929 gae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  929 GAENSGNLFTVRKDSD  944 (1096)
T ss_pred             eecccccEEEEEecCC
Confidence            6667888887766543

>PHA02713 hypothetical protein; Provisional

Probab=97.63  E-value=0.0082  Score=53.16  Aligned_cols=216  Identities=7%  Similarity=0.012  Sum_probs=104.3

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------CeEEEEEeCCCCCCCCceeeccCCcceEE
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------GSVKIYDTALPPTANPIRSLHEHTREVHS  111 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~~~~~v~~  111 (317)
                      .+..||.....  ...+........-.+++.. ++ .+.+.|+.+      ..+..||.... .+..+..+....... +
T Consensus       273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l-~~-~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~  346 (557)
T PHA02713        273 CILVYNINTME--YSVISTIPNHIINYASAIV-DN-EIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-S  346 (557)
T ss_pred             CEEEEeCCCCe--EEECCCCCccccceEEEEE-CC-EEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-e
Confidence            46677776553  2222222221111223332 33 577777753      34677786653 222222222111122 2


Q ss_pred             EEEecCCCCEEEEEcCCC-----EEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCC------------
Q 021121          112 ADYNPTRRDSFITSSWDD-----TVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDC------------  172 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------------  172 (317)
                      ++. -++. +.+.|+.++     .+..||..+.+-..  .+.........+..   ++.+.+.|+.++            
T Consensus       347 ~~~-~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~  421 (557)
T PHA02713        347 LAV-IDDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNS  421 (557)
T ss_pred             EEE-ECCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccc
Confidence            222 2344 677777653     48889987653221  11111111112222   267777777542            


Q ss_pred             -----------eEEEEeCCCCC--ceeeeccCccceEEEEecCCCCcEEEEEecC------CcEEEEEccC-CCc-cEEE
Q 021121          173 -----------TLRIWDVREMG--STMIIPAHEFEILACDWNKYDDCLIASASVD------KSIKIWDVRN-YRV-PIAV  231 (317)
Q Consensus       173 -----------~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~v~d~~~-~~~-~~~~  231 (317)
                                 .+..||.++.+  .+..+....... +++..  ++.+.+.|+.+      ..+..||..+ .+- .+..
T Consensus       422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~  498 (557)
T PHA02713        422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT  498 (557)
T ss_pred             ccccccccccceEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence                       47778877642  122221111111 22222  66777777754      2467898886 331 1122


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCC--eEEEEeccccc
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVED  270 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~  270 (317)
                      +.........+.+  +++ +.+.|+.++  .+..||..+.+
T Consensus       499 m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        499 TESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             cCcccccceeEEE--CCE-EEEEeeecceeehhhcCccccc
Confidence            2222222222333  454 788999888  78888888766

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.56  E-value=0.024  Score=50.39  Aligned_cols=188  Identities=12%  Similarity=0.063  Sum_probs=99.3

Q ss_pred             CCeeEEEecCCCCCeEEEEE-----cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC--------
Q 021121           61 DGVYDLAWSESHDSLLIAAV-----ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW--------  127 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------  127 (317)
                      ..+...+.+|+|+...++..     .|..-.+|-...+.....+  ..+  .....-.|+|+|. .+.+...        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCC-ceEEEecCcceEEEe
Confidence            46788999999965544442     2444455544333222222  222  2377788999977 4444432        


Q ss_pred             ----CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE---EeCCCCCc-e---eeec-cCccce
Q 021121          128 ----DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI---WDVREMGS-T---MIIP-AHEFEI  195 (317)
Q Consensus       128 ----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~-~~~~~v  195 (317)
                          .+.+.+.+++.++...   ...+.|..+.|+|+ +..++... +|.|++   -....++. +   ..+. .....+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD-G~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRD-GVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC-CCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                2344444554443322   23557999999999 55555444 477777   44334431 1   1122 223336


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEE
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCL  263 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~v  263 (317)
                      .++.|.+ ++.++ ++..++.-.+|.+.-.......+..  ...++..++=++. .  ++....++.+.+
T Consensus       500 ~~l~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~--iyv~~~~g~~~l  564 (591)
T PRK13616        500 VSLDWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T--VYVTDARAVLQL  564 (591)
T ss_pred             ccceEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e--EEEEcCCceEEe
Confidence            8899998 77654 5555554445544322211111122  2456777777763 2  444455664443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.56  E-value=0.02  Score=43.29  Aligned_cols=143  Identities=7%  Similarity=0.077  Sum_probs=91.8

Q ss_pred             CCCeeEEEecCCCCCeEEEEEc----------CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121           60 ADGVYDLAWSESHDSLLIAAVA----------DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~----------dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      +...+.-..+|+|. + ..|..          .|.++.|-..     ..+..+...-.--+.++|+.+.+.+.++-+.+-
T Consensus       108 knR~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~-----h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAG-----HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY  180 (310)
T ss_pred             hcccccCccCCCCc-e-eeeeeccccccccccccEEEEeccC-----CCceeeehhccCCccccccccCcEEEEEccCce
Confidence            44566777889984 4 33332          2445555433     222222233344467899988876777778888


Q ss_pred             EEEEEE--cCCCc-----eeEEeec----cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEE
Q 021121          130 TVKLWT--VDRPT-----SVRTFKE----HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC  198 (317)
Q Consensus       130 ~v~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i  198 (317)
                      +|.-||  ..+|.     .+..++.    ..-..-.++.... +++.+++-..++|...|+.+++.+..++-....++|+
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC-CcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            998888  55553     2223321    1112233444544 8899999999999999999999999998888899999


Q ss_pred             EecCCCCcEEEE
Q 021121          199 DWNKYDDCLIAS  210 (317)
Q Consensus       199 ~~~~~~~~~l~~  210 (317)
                      +|--.+-..+.+
T Consensus       260 cFgGkn~d~~yv  271 (310)
T KOG4499|consen  260 CFGGKNLDILYV  271 (310)
T ss_pred             EecCCCccEEEE
Confidence            997533334443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.49  E-value=0.035  Score=44.51  Aligned_cols=218  Identities=13%  Similarity=0.086  Sum_probs=120.5

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe--------
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF--------  145 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~--------  145 (317)
                      ..|+.|+.+| +.+++....  .......  +...|..+...|+-+ .+++-+ |+.+.++++..-......        
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~--~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDP--SKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CEEEEEECCC-EEEEEecCC--ccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            5888999998 899998322  1222222  233499999998876 555554 599999998765433311        


Q ss_pred             ------eccccceEEEE-EecCCCCeEEEEeCCCeEEEEeCCCC-----CceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          146 ------KEHAYCVYNAT-WNPRHSDVFCSASGDCTLRIWDVREM-----GSTMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       146 ------~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                            ......+...+ -....+...+.......|.+|.....     +..+.+. ....+.+++|.+   +.++.|..
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~~  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGTS  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEeC
Confidence                  11122344444 11222333344445558888887653     2334444 346788899873   45666664


Q ss_pred             CCcEEEEEccCCCccEEEEec------------CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-eeeeccc
Q 021121          214 DKSIKIWDVRNYRVPIAVLNG------------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-GRYDHHT  280 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~  280 (317)
                       ....+.|+.++.. ...+..            ...++..+... ++. +|++.  |..-.+.|. .++... ..+.- .
T Consensus       157 -~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~  228 (275)
T PF00780_consen  157 -KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNK-NGEPSRKSTIQW-S  228 (275)
T ss_pred             -CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcC-CCCcCcccEEEc-C
Confidence             4588999986542 222211            11234334443 344 56543  333334443 333222 22332 2


Q ss_pred             ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          281 EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       281 ~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ....++++.   ..+|++.+. +.|.||++...+
T Consensus       229 ~~p~~~~~~---~pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  229 SAPQSVAYS---SPYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             CchhEEEEE---CCEEEEECC-CEEEEEECcCCc
Confidence            345667775   346666655 459999998763

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.42  E-value=0.00085  Score=37.02  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      .....|.+++|+|..+ ++|.|+.+|.|.+++++
T Consensus         9 ~l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            4566799999999984 99999999999999984

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.039  Score=43.31  Aligned_cols=162  Identities=15%  Similarity=0.221  Sum_probs=102.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      +....+.++.|+|+.+ .|++..+...-.|+=...+   ..+..+.- .-.....+.+..++. ++++--.++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~G---dlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEG---DLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcc-eEEEecCCCceEEEEecCC---ceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence            3445599999999985 5555544554444433333   44444321 123345577877766 7777777888988887


Q ss_pred             CCCceeEEe----------eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec---cC-------ccceE
Q 021121          137 DRPTSVRTF----------KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP---AH-------EFEIL  196 (317)
Q Consensus       137 ~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~-------~~~v~  196 (317)
                      .........          ...+.....++|.|. ...|..+-+..-+.||............   .+       -..+.
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            665322211          112456889999999 6667677777777777766433111111   11       23467


Q ss_pred             EEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121          197 ACDWNKYDDCLIASASVDKSIKIWDVRNY  225 (317)
Q Consensus       197 ~i~~~~~~~~~l~~~~~d~~i~v~d~~~~  225 (317)
                      ++.|++..+.+++-+.+++.+.-.|....
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEecCCC
Confidence            88899878889999999998888887653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.40  E-value=0.081  Score=46.61  Aligned_cols=56  Identities=5%  Similarity=-0.060  Sum_probs=39.1

Q ss_pred             EEEEEEcCCCceeEEeeccccce---------EEEEEecCCC--CeEEEEeCCCeEEEEeCCCCCce
Q 021121          130 TVKLWTVDRPTSVRTFKEHAYCV---------YNATWNPRHS--DVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      +|.-.|+++++..-.++.....+         .-+....++.  ..++.+.++|.+++.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            68888999999888776432211         2222223422  37889999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0011  Score=60.06  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA  283 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v  283 (317)
                      .+..++.|+..|.+-.+|....-.+...-..-.++|++++|+.+|+ +++.|-.+|.|.+||+..++ +.+.+..|..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCc-ceeeeeecCCcc
Confidence            4557888999999999998874333333334467999999999998 78889999999999999876 556666666655


Q ss_pred             EeEEE---EeccCCeEEEeecCCcEEEEecCC
Q 021121          284 VGVDM---SVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       284 ~~~~~---~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +++-+   ..+ ...++++...|.  +|++.-
T Consensus       176 t~vi~v~~t~~-nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  176 TGVIFVGRTSQ-NSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             ceEEEEEEeCC-CcEEEEccCCCc--eEEEEe
Confidence            55533   333 346888887776  677643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.00042  Score=51.69  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc-cce
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA-YCV  152 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v  152 (317)
                      .-+++|+.+|.|.+|+.....  .....+..-...|.++--.-+...+..+++.||.|+.|++.-.+.+.....|. .++
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             ceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            578999999999999976321  11111222233343333222222388999999999999998887777666666 344


Q ss_pred             EEEEEecCCCCeEEEE--eCCCeEEEEeCC
Q 021121          153 YNATWNPRHSDVFCSA--SGDCTLRIWDVR  180 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~--~~dg~i~i~d~~  180 (317)
                      ..+..... ...++.+  +.|..++.|++.
T Consensus       149 e~~ivv~s-d~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  149 EELIVVGS-DEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ceeEEecC-CceEEeeccccchhhhhcchh
Confidence            44443333 3444444  555556666654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.33  E-value=0.052  Score=42.85  Aligned_cols=146  Identities=10%  Similarity=-0.001  Sum_probs=83.2

Q ss_pred             ceEEEEEecCCCCeEEEEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE-ccCCCc
Q 021121          151 CVYNATWNPRHSDVFCSAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD-VRNYRV  227 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d-~~~~~~  227 (317)
                      .+.+.++++++..+.++..  ....++++..  +....... ....+..-.|++ ++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence            6889999999444444442  3344555543  33333332 233678889999 677777766666666663 233332


Q ss_pred             cEEEEecC--CCceeEEEecCCCCeeEEee--ecCCeEEEEeccccc--------ceeeeeecccceeEeEEEEeccCCe
Q 021121          228 PIAVLNGH--GYAVRKVKFSPHRRNLLASC--SYDMTVCLWDFMVED--------ALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       228 ~~~~~~~~--~~~v~~~~~~~~~~~~l~~~--~~d~~i~vwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      ........  ...|+.+.+||||.++.+..  ..++.|.+--+....        ............+++++|.++ ..+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~-~~L  179 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD-STL  179 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC-CEE
Confidence            22222221  12899999999999754444  235667665443221        111222233457899999997 555


Q ss_pred             EEEeec
Q 021121          296 LASTGW  301 (317)
Q Consensus       296 l~s~~~  301 (317)
                      ++.+..
T Consensus       180 ~V~~~~  185 (253)
T PF10647_consen  180 VVLGRS  185 (253)
T ss_pred             EEEeCC
Confidence            555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.30  E-value=0.082  Score=44.55  Aligned_cols=79  Identities=18%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce-eEeEEEEecc----------------CC-eEE
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF-AVGVDMSVLV----------------EG-LLA  297 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~----------------~~-~l~  297 (317)
                      ...+.+++.+|.++ +.++...=|.|.++|+.++. .++..++-++. +.-+......                .. +++
T Consensus       307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            34678899999987 78887778999999998875 44444443321 1101000000                01 334


Q ss_pred             EeecCCcEEEEecCCCCCC
Q 021121          298 STGWDELVYVWQQGMDPRA  316 (317)
Q Consensus       298 s~~~dg~i~~w~~~~~~~~  316 (317)
                      -+-.-|.|.||.+...+|.
T Consensus       385 yaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EeccCCeEEEEecCCCCEE
Confidence            4557899999999988874

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.28  E-value=0.14  Score=46.86  Aligned_cols=266  Identities=12%  Similarity=0.050  Sum_probs=136.6

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC--CCC---eEEEEEcCCeEEEEEeCCCCCCCCcee--e--ccCC
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES--HDS---LLIAAVADGSVKIYDTALPPTANPIRS--L--HEHT  106 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~---~l~~~~~dg~i~v~~~~~~~~~~~~~~--~--~~~~  106 (317)
                      ++.+...++....  +.+.........|.|+.++|-  +++   ++++|..+..+.+.-.....  ..+..  +  ..-.
T Consensus       508 ~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~--~~~~~~~l~~~~iP  583 (1096)
T KOG1897|consen  508 GLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL--ILITHEQLSGEIIP  583 (1096)
T ss_pred             ccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc--ceeeeeccCCCccc
Confidence            4456666665554  444444455678999999975  445   88999888777666544321  11111  1  1223


Q ss_pred             cceEEEEEecCCCCEEEEEcCCCEEEEEEcCC--CceeEE--eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121          107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDR--PTSVRT--FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM  182 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (317)
                      ..|.-.++-.+.. +|+++..||.+..+.+..  ++.-..  ..-...|+.--.|+..+...+++++ |.-..+|..+ +
T Consensus       584 RSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n-~  660 (1096)
T KOG1897|consen  584 RSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSN-G  660 (1096)
T ss_pred             hheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecC-C
Confidence            4455556665554 999999999998775543  322111  1223445665666666455554444 4444455533 2


Q ss_pred             CceeeeccCccceEE-EEec-CCCCcEEEEEecCCcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCCeeEEeeec--
Q 021121          183 GSTMIIPAHEFEILA-CDWN-KYDDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSY--  257 (317)
Q Consensus       183 ~~~~~~~~~~~~v~~-i~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--  257 (317)
                      +...+--.. ..+.. +.|+ +.-+..++.+. .+.+++.-+..-+. -.++.. -....+.+++.+... ++.+.+.  
T Consensus       661 kLv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~  736 (1096)
T KOG1897|consen  661 KLVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSL-TFGVLSNRI  736 (1096)
T ss_pred             cEEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccce-EEEEEeccc
Confidence            222111000 11111 1122 11233455544 45677776654332 233333 334667888887443 3333331  


Q ss_pred             ---------C---CeEEEEecccccceeeeeecccc---eeEeEEEEeccCCeEEEeec----------CCcEEEEecCC
Q 021121          258 ---------D---MTVCLWDFMVEDALVGRYDHHTE---FAVGVDMSVLVEGLLASTGW----------DELVYVWQQGM  312 (317)
Q Consensus       258 ---------d---~~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~----------dg~i~~w~~~~  312 (317)
                               .   ..++++|-.+-+.+.........   .+.++.|..+.+.+++.|..          .|.|.++.+..
T Consensus       737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence                     1   13566665554422111111122   34455587774556666652          57788888766

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0086  Score=55.08  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=92.6

Q ss_pred             ceEEEEEecCCCCEEEE-EcCCCEEEEEEcCCCceeE-----------EeeccccceEEEEEecCCCCeEEEEeCCCeEE
Q 021121          108 EVHSADYNPTRRDSFIT-SSWDDTVKLWTVDRPTSVR-----------TFKEHAYCVYNATWNPRHSDVFCSASGDCTLR  175 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  175 (317)
                      ++..+...+|+....+. .+.+-.|..||+++-..-.           ..........++.|+|.-....+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556666675533333 3334478899997532111           11122345678899998777788889999999


Q ss_pred             EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec----CCCceeEEEecCCCCee
Q 021121          176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG----HGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~  251 (317)
                      +..+........--......++++|+| .|..++.|-..|++.-|...-..  ...+.+    ....|.+++|-.... +
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~lei--k~~ip~Pp~~e~yrvl~v~Wl~t~e-f  257 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEI--KSEIPEPPVEENYRVLSVTWLSTQE-F  257 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccce--eecccCCCcCCCcceeEEEEeccee-E
Confidence            988765433332223456789999999 99999999999999988754321  111111    146789999987766 4


Q ss_pred             EEe
Q 021121          252 LAS  254 (317)
Q Consensus       252 l~~  254 (317)
                      ++.
T Consensus       258 lvv  260 (1405)
T KOG3630|consen  258 LVV  260 (1405)
T ss_pred             EEE
Confidence            443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.20  E-value=0.14  Score=45.16  Aligned_cols=145  Identities=12%  Similarity=0.107  Sum_probs=84.2

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeec--cCC--cceEE-EEEecCCCCEEEEEc------CCCEEEEEEcCCCceeE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLH--EHT--REVHS-ADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~~--~~v~~-~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~  143 (317)
                      .++.++.++.+.-+|.+++   +.+....  .+.  ..+.+ -... ++  .++.+.      .+|.|..+|.++++.+-
T Consensus       122 ~v~v~t~dg~l~ALDa~TG---k~~W~~~~~~~~~~~~~tssP~v~-~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTG---KVVWSKKNGDYKAGYTITAAPLVV-KG--KVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             EEEEEcCCCEEEEEECCCC---CEEeecccccccccccccCCcEEE-CC--EEEEeecccccCCCcEEEEEECCCCceeE
Confidence            5677788999999998776   3333222  111  11111 1111 23  455543      26899999999998776


Q ss_pred             Eeecccc-------------------------------ce-EEEEEecCCCCeEEEEeCC-----C-----------eEE
Q 021121          144 TFKEHAY-------------------------------CV-YNATWNPRHSDVFCSASGD-----C-----------TLR  175 (317)
Q Consensus       144 ~~~~~~~-------------------------------~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~  175 (317)
                      .+..-..                               .+ ..+++.|. ..+++.+..+     +           .|.
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v  274 (527)
T TIGR03075       196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIV  274 (527)
T ss_pred             eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence            6532111                               11 12355665 4555555421     2           577


Q ss_pred             EEeCCCCCceeeeccCccc---------eEEEEecCCCCc---EEEEEecCCcEEEEEccCCCc
Q 021121          176 IWDVREMGSTMIIPAHEFE---------ILACDWNKYDDC---LIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      -.|+++++..-.++.....         ..-+.... +++   .++.+..+|.+++.|.++++.
T Consensus       275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence            7788888887666532211         11222222 444   788999999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK10115 protease 2; Provisional

Probab=97.15  E-value=0.19  Score=45.91  Aligned_cols=240  Identities=9%  Similarity=0.020  Sum_probs=117.4

Q ss_pred             CeeEEEecCCCCCeEEEEEc-C----CeEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCCCCEEEEEcCC-----CE
Q 021121           62 GVYDLAWSESHDSLLIAAVA-D----GSVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTRRDSFITSSWD-----DT  130 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~-d----g~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~  130 (317)
                      .+..+.|+|+++ +|+.+.. +    ..|++.|+.++   ..+. .+.. ..  ..++|.+++..++++...+     ..
T Consensus       128 ~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg---~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        128 TLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETG---NWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCC---CCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCE
Confidence            367788999985 5555432 2    35778888754   2221 1111 11  4589999987455554322     47


Q ss_pred             EEEEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCC--CCCceeeeccCccceEEEEecCC
Q 021121          131 VKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVR--EMGSTMIIPAHEFEILACDWNKY  203 (317)
Q Consensus       131 v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~i~~~~~  203 (317)
                      |+.+++.++  +....+........-..+.+.++..++..+.   ++.+.+++..  .++....+.........+. +. 
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  278 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-  278 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence            888898887  3333444333333323333422554444332   4578888853  3332222322222223332 32 


Q ss_pred             CCcEEEEEecC-C--cEEEEEccCCCccEEEEecC-C-CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-
Q 021121          204 DDCLIASASVD-K--SIKIWDVRNYRVPIAVLNGH-G-YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-  277 (317)
Q Consensus       204 ~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-  277 (317)
                      .+.+++....+ .  .|...++..... ...+..+ . ..+..+.+.  +++++++...+|.-+++-+.........+. 
T Consensus       279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~  355 (686)
T PRK10115        279 QHRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAF  355 (686)
T ss_pred             CCEEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence            33333333222 2  344444442222 2333344 2 367888887  335788888888766655443211222222 


Q ss_pred             cccceeEeEEEE--eccCCeEEEee---cCCcEEEEecCCC
Q 021121          278 HHTEFAVGVDMS--VLVEGLLASTG---WDELVYVWQQGMD  313 (317)
Q Consensus       278 ~~~~~v~~~~~~--~~~~~~l~s~~---~dg~i~~w~~~~~  313 (317)
                      .....+..+.++  ++.+.++++.+   .-+.+..+|+.+.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            222223333344  33233444433   3466777776543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.15  E-value=0.068  Score=40.54  Aligned_cols=149  Identities=13%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             EEEecCCCCeEEEEEeccccc---ccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           13 VKFSPFYESRLAVATAQNFGI---LGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      -..+|  ++++.+++...++.   ...|.++.|-....-   .  ..+..-.--+.++|..+...+..+-+.+-+|.-||
T Consensus       114 gkvdP--~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v---~--~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  114 GKVDP--DGRYYGGTMADFGDDLEPIGGELYSWLAGHQV---E--LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             CccCC--CCceeeeeeccccccccccccEEEEeccCCCc---e--eeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            34556  67886666554322   234667777654321   1  11122333467899987766666777777887788


Q ss_pred             eC--CCCCC--CCceeecc----CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           90 TA--LPPTA--NPIRSLHE----HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        90 ~~--~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      .+  ++.-.  +.+..++.    ....--.++...+|. +.++.-..|+|...|+.+|+.+.+++-....+++++|--.+
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence            43  33211  12222221    111122345555676 77777778999999999999999999889999999997543


Q ss_pred             CCeEEEEe
Q 021121          162 SDVFCSAS  169 (317)
Q Consensus       162 ~~~l~~~~  169 (317)
                      -.++++..
T Consensus       266 ~d~~yvT~  273 (310)
T KOG4499|consen  266 LDILYVTT  273 (310)
T ss_pred             ccEEEEEe
Confidence            45555543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.11  E-value=0.0026  Score=35.10  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=29.5

Q ss_pred             CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121          106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      ...|.+++|+|... +++.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            45799999999988 9999999999999998 4443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.09  E-value=0.16  Score=43.93  Aligned_cols=123  Identities=14%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             ecCCCCeeEEEecCC----CCCeEEEEEcCCeEEEEEeCCC--CCCCCceeeccC-Cc----ceEEEEEecCCCCEEEEE
Q 021121           57 FDTADGVYDLAWSES----HDSLLIAAVADGSVKIYDTALP--PTANPIRSLHEH-TR----EVHSADYNPTRRDSFITS  125 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~-~~----~v~~~~~~~~~~~~l~~~  125 (317)
                      .+.-+.|..+.|.|-    .+.+| +......|.||.+...  +..+.+..-..+ .+    --..+-|+|... .|++-
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VL  130 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVL  130 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceE-EEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEE
Confidence            344456999999985    33344 4456788999998632  122222221111 11    123567999877 66555


Q ss_pred             cCCCEEEEEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121          126 SWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM  182 (317)
Q Consensus       126 ~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (317)
                      .....-.++++...  .....+ ...+.|.|.+|.+|+.+++++.+..=.-++||-...
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            54444445555433  222233 356789999999996666666666667789986543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.01  E-value=0.13  Score=41.45  Aligned_cols=230  Identities=11%  Similarity=0.116  Sum_probs=105.6

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ....++.|..  +..+++ +.       .| + ++...........+..- ..+.....+....++  .....+..|.  
T Consensus        62 ~~l~~I~f~~--~~g~iv-G~-------~g-~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~--  125 (302)
T PF14870_consen   62 YHLNSISFDG--NEGWIV-GE-------PG-L-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG--SAELAGDRGA--  125 (302)
T ss_dssp             -EEEEEEEET--TEEEEE-EE-------TT-E-EEEESSTTSS-EE----TT-SS-EEEEEEEETT--EEEEEETT----
T ss_pred             eeEEEEEecC--CceEEE-cC-------Cc-e-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCc--
Confidence            3466777765  444443 33       33 3 33344444334443321 122333444444333  3333445554  


Q ss_pred             EEEeCCCC-CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           87 IYDTALPP-TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        87 v~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ||....+. ..+.  ....-.+.+..+.-+++|. +++++..-....-||.-...-...-+....+|..+.|.|+ +.+.
T Consensus       126 iy~T~DgG~tW~~--~~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-~~lw  201 (302)
T PF14870_consen  126 IYRTTDGGKTWQA--VVSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-GNLW  201 (302)
T ss_dssp             EEEESSTTSSEEE--EE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-S-EE
T ss_pred             EEEeCCCCCCeeE--cccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecCC-CCEE
Confidence            45444332 2222  1234457788888899998 7777776556667875433222223335678999999998 6665


Q ss_pred             EEEeCCCeEEEEeCC-CCCce----eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe---cCCC
Q 021121          166 CSASGDCTLRIWDVR-EMGST----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN---GHGY  237 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~-~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~  237 (317)
                      +. ...|.|+.=+.. ..+.-    ..+....-.+..++|.+ +....++|+ .|.+ +.....++. -+...   .-..
T Consensus       202 ~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGkt-W~~~~~~~~~~~  276 (302)
T PF14870_consen  202 ML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKT-WQKDRVGENVPS  276 (302)
T ss_dssp             EE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS--EE-GGGTTSSS
T ss_pred             EE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCcc-ceECccccCCCC
Confidence            54 488999887722 11111    11112233478999998 676666655 4544 344444443 33322   2244


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEE
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vw  264 (317)
                      ..+.+.|.+..+ -++. +.+|.+--|
T Consensus       277 n~~~i~f~~~~~-gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  277 NLYRIVFVNPDK-GFVL-GQDGVLLRY  301 (302)
T ss_dssp             ---EEEEEETTE-EEEE--STTEEEEE
T ss_pred             ceEEEEEcCCCc-eEEE-CCCcEEEEe
Confidence            678899976655 3444 567876544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.97  E-value=0.12  Score=40.44  Aligned_cols=236  Identities=12%  Similarity=0.136  Sum_probs=128.4

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCe-EEEEEeCCCCCCCCce-----eeccCCcceEEEEEecCCCCEEEEEcC-----
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGS-VKIYDTALPPTANPIR-----SLHEHTREVHSADYNPTRRDSFITSSW-----  127 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~-i~v~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~-----  127 (317)
                      -+..-..|+|+|..+.-++.+-.-|+ ..++|.........+.     .+.+|      =.|+|+|. +|++.-.     
T Consensus        66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~-~LYATEndfd~~  138 (366)
T COG3490          66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGR-LLYATENDFDPN  138 (366)
T ss_pred             cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCc-EEEeecCCCCCC
Confidence            34455678899987777777766665 5577876552222111     12233      35999998 6665533     


Q ss_pred             CCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeEEEEeC------------------CCeEEEEeCCCCCceeee
Q 021121          128 DDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFCSASG------------------DCTLRIWDVREMGSTMII  188 (317)
Q Consensus       128 dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~  188 (317)
                      .|.|-+||.+.+ +.+.++..|.-....+.|.+| +..++.+..                  .-++.+.|..+++.+.+.
T Consensus       139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh  217 (366)
T COG3490         139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH  217 (366)
T ss_pred             CceEEEEecccccceecccccCCcCcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc
Confidence            378999999854 556677777777889999999 666665432                  011223333333332221


Q ss_pred             --c--cCccceEEEEecCCCCcEEEEEecCCcE----EEEEccCCCccEEEEec-------CCCceeEEEecCCCCeeEE
Q 021121          189 --P--AHEFEILACDWNKYDDCLIASASVDKSI----KIWDVRNYRVPIAVLNG-------HGYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       189 --~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i----~v~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~  253 (317)
                        .  .+...+..++..+ ++..++.+-..|.-    -+.-......++..+..       ....|-+++.+.+...+.+
T Consensus       218 ~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~l  296 (366)
T COG3490         218 TLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVAL  296 (366)
T ss_pred             cCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEE
Confidence              1  2334577777776 66655554333210    00000011112222221       1235677888766663444


Q ss_pred             eeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       254 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      ++-..+...+||..++. ++..-.-  .....++-  . ..-++..+.+|.+.++.
T Consensus       297 TSP~GN~~vi~da~tG~-vv~~a~l--~daaGva~--~-~~gf~vssg~G~~~~~s  346 (366)
T COG3490         297 TSPRGNRAVIWDAATGA-VVSEAAL--PDAAGVAA--A-KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             ecCCCCeEEEEEcCCCc-EEecccc--ccccccee--c-cCceEEecCCceEEecc
Confidence            44456678899999987 3222111  11223332  2 23345555578777664

>PRK10115 protease 2; Provisional

Probab=96.95  E-value=0.3  Score=44.68  Aligned_cols=198  Identities=6%  Similarity=0.006  Sum_probs=101.0

Q ss_pred             cceEEEEEecCCCCEEEEEcCC----CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-----CeEEEE
Q 021121          107 REVHSADYNPTRRDSFITSSWD----DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-----CTLRIW  177 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~  177 (317)
                      -.+..+.|+|+++.+.++.+.+    ..|++.|+.+++.+...-....  ..++|.+++..++++...+     ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3466788999998333443333    3588999988764322211111  4599999844455554432     368888


Q ss_pred             eCCCC--CceeeeccCccceE-EEEecCCCCcEEEEEec---CCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCe
Q 021121          178 DVREM--GSTMIIPAHEFEIL-ACDWNKYDDCLIASASV---DKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       178 d~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  250 (317)
                      ++.++  +....+........ .+..+. ++++++..+.   ++.+.+++..... .+...+.........+. +..+. 
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  281 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR-  281 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE-
Confidence            88877  33334443222232 333333 6665554433   3468888853321 11222221122222222 22333 


Q ss_pred             eEEeeecC-C--eEEEEecccccceeeeeecc-c-ceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          251 LLASCSYD-M--TVCLWDFMVEDALVGRYDHH-T-EFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       251 ~l~~~~~d-~--~i~vwd~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +++....+ .  .|...++..... ...+..+ . ..|..+.+..  +.++++...+|.-+++-++.
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEcC
Confidence            33333221 2  343334442221 2233333 2 3678788773  56777777788777766654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.95  E-value=0.13  Score=43.62  Aligned_cols=145  Identities=17%  Similarity=0.247  Sum_probs=94.9

Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC-------CCeEEEEeCCCeEEEEeCCCCCceee
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-------SDVFCSASGDCTLRIWDVREMGSTMI  187 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~  187 (317)
                      ..+...++..|+....++-.|++.|+.+..+..+..-  -+.|.|..       .+.| +|-.+..|.-.|.|-......
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCcee
Confidence            3444434556667778888999999999988876653  56777751       2334 455566677777765432111


Q ss_pred             eccC-----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEE
Q 021121          188 IPAH-----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC  262 (317)
Q Consensus       188 ~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  262 (317)
                      ....     .....+..-.  ...++++++..|-|++||--. ......+.+.+..|..+..+.+|+.+|+++  ...+.
T Consensus       553 v~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yll  627 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLL  627 (776)
T ss_pred             eeeehhccccccccccccc--cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEE
Confidence            1111     1223333332  456899999999999999654 333556777888999999999999766665  45677


Q ss_pred             EEecc
Q 021121          263 LWDFM  267 (317)
Q Consensus       263 vwd~~  267 (317)
                      +-|++
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            77764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.87  E-value=0.15  Score=39.92  Aligned_cols=191  Identities=10%  Similarity=0.079  Sum_probs=113.4

Q ss_pred             eeeecCCC--CeeEEEecCCCCCeEEEEEcCC--eEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcCC
Q 021121           54 LVAFDTAD--GVYDLAWSESHDSLLIAAVADG--SVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWD  128 (317)
Q Consensus        54 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d  128 (317)
                      +..+.|..  -...+.|..++ .++-+.+.-|  .|+.+|+.++   +......- ..---..++...+ . +..-.=.+
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg---~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk~  109 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETG---KVLQSVPLPPRYFGEGITILGD-K-LYQLTWKE  109 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTS---SEEEEEE-TTT--EEEEEEETT-E-EEEEESSS
T ss_pred             EEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCC---cEEEEEECCccccceeEEEECC-E-EEEEEecC
Confidence            34444443  34567786666 4666665555  6888888776   33322221 1222233444433 2 45555678


Q ss_pred             CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC--c---cceEEEEecCC
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH--E---FEILACDWNKY  203 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~i~~~~~  203 (317)
                      +...+||.++.+.+.++.- .+.-+.++.  + +..|+.......++++|..+.+....+...  .   ..++.+.|.  
T Consensus       110 ~~~f~yd~~tl~~~~~~~y-~~EGWGLt~--d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--  183 (264)
T PF05096_consen  110 GTGFVYDPNTLKKIGTFPY-PGEGWGLTS--D-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--  183 (264)
T ss_dssp             SEEEEEETTTTEEEEEEE--SSS--EEEE--C-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred             CeEEEEccccceEEEEEec-CCcceEEEc--C-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence            9999999999988888863 456677773  3 555666666778999999888776665432  1   235667776  


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCccEEEEe---------------cCCCceeEEEecCCCCeeEEeeec
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRVPIAVLN---------------GHGYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                      ++.+.|=.-....|...|..+++. ...+.               ......+.|++.|..+.+++||-.
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            566666666667788888877663 22221               013468899999999888888753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=96.87  E-value=0.15  Score=45.27  Aligned_cols=182  Identities=10%  Similarity=0.105  Sum_probs=84.7

Q ss_pred             CeEEEEEcCC------eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCcee
Q 021121           74 SLLIAAVADG------SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPTSV  142 (317)
Q Consensus        74 ~~l~~~~~dg------~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~  142 (317)
                      .+++.|+.++      .+..||..+. .+.....+.........+.+  ++. +++.|+.+     ..+..||..+.+-.
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNR-IYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCE-EEEEeCCCCCEecceEEEEcCCCCcee
Confidence            4666666542      4667776543 22222222211112222222  344 67777755     35778888765322


Q ss_pred             E--EeeccccceEEEEEecCCCCeEEEEeCC------CeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          143 R--TFKEHAYCVYNATWNPRHSDVFCSASGD------CTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       143 ~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      .  .+...... .+++..  ++.+.+.|+.+      ..+..||+.+.+=  ...++..... .+++..  ++.+++.|+
T Consensus       372 ~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG  445 (534)
T PHA03098        372 EEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGG  445 (534)
T ss_pred             eCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECC
Confidence            1  11111111 112221  26677777632      4588899876421  1111111111 122222  566777776


Q ss_pred             cCC--------cEEEEEccCCCccEEEEec---CCCceeEEEecCCCCeeEEeeecC-----CeEEEEeccccc
Q 021121          213 VDK--------SIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVED  270 (317)
Q Consensus       213 ~d~--------~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  270 (317)
                      .+.        .+.+||..+.+-  .....   .......+.+  +++ +++.|+.+     +.+.+||..+.+
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKW--TELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCce--eeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence            432        388888876431  11111   1111112222  454 66677654     467888877654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.025  Score=52.30  Aligned_cols=148  Identities=11%  Similarity=0.110  Sum_probs=90.4

Q ss_pred             CCCeeEEEecCCCCCeEEE-EEcCCeEEEEEeCCCCCC-----CCce---eeccCCcceEEEEEecCCCCEEEEEcCCCE
Q 021121           60 ADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTA-----NPIR---SLHEHTREVHSADYNPTRRDSFITSSWDDT  130 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~-~~~dg~i~v~~~~~~~~~-----~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  130 (317)
                      .-.+..+...+|+....+. .+.+-.|..||++.-...     .+++   .......-..++.|+|.-....++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3455666666665322222 233347888998753211     1111   111223445678899887667888889999


Q ss_pred             EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc----CccceEEEEecCCCCc
Q 021121          131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDC  206 (317)
Q Consensus       131 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~i~~~~~~~~  206 (317)
                      |++..+........-.......++++|+|. +..++.|-..|++.-|...- +....+.+    ....|.++.|-. ...
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~-t~e  256 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLS-TQE  256 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccc-cceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEec-cee
Confidence            999877543222221224566899999999 88888999999999887642 32233221    135689999986 444


Q ss_pred             EEEE
Q 021121          207 LIAS  210 (317)
Q Consensus       207 ~l~~  210 (317)
                      ++++
T Consensus       257 flvv  260 (1405)
T KOG3630|consen  257 FLVV  260 (1405)
T ss_pred             EEEE
Confidence            4443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.80  E-value=0.4  Score=43.83  Aligned_cols=76  Identities=24%  Similarity=0.323  Sum_probs=50.9

Q ss_pred             cceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---------Cce---eEEe--------eccccceEEEEEecCC--CCe
Q 021121          107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDR---------PTS---VRTF--------KEHAYCVYNATWNPRH--SDV  164 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~---~~~~--------~~~~~~v~~~~~~~~~--~~~  164 (317)
                      -.|..+.++|+|. +++..|..|...+.=.+.         ++.   .+.+        ......|..+.|+|.+  +..
T Consensus        85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3688899999998 677666655444332221         111   1111        1234578999999973  578


Q ss_pred             EEEEeCCCeEEEEeCCCCC
Q 021121          165 FCSASGDCTLRIWDVREMG  183 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~  183 (317)
                      |++-+.|+.+|+||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8889999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.18  Score=39.70  Aligned_cols=260  Identities=15%  Similarity=0.108  Sum_probs=142.2

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      +.-++|.|+..... ...+..+...+--.++..+  | +++.++..+.-..+.|+..+........+......-..++.+
T Consensus       105 ssGL~IvDIS~P~s-P~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS  180 (370)
T COG5276         105 SSGLRIVDISTPDS-PTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS  180 (370)
T ss_pred             CCceEEEeccCCCC-cceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe
Confidence            56799999987653 2233333333333444444  5 477777655557888998775555555555555555677777


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-c
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-E  192 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~  192 (317)
                        |+ +-..+..|+-+.+.|+.......-+.  .....+.++..+++ ..+++. . +--+.+-|..+.+....+-.. .
T Consensus       181 --Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-r~y~vv-y-~egvlivd~s~~ssp~~~gsyet  254 (370)
T COG5276         181 --GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-RAYLVV-Y-DEGVLIVDVSGPSSPTVFGSYET  254 (370)
T ss_pred             --cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-eeEEEE-c-ccceEEEecCCCCCceEeecccc
Confidence              44 67777889999999998764322221  12235777777765 444433 3 334667787766544443211 1


Q ss_pred             cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE--EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV--LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       193 ~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ..+.++.--|-.+++......+.-+.+-|..+...+...  +......-..+..+  +. ++..+..+ ...+-+....+
T Consensus       255 ~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~-y~yiadkn-~g~vV~~s~~s  330 (370)
T COG5276         255 SNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GN-YNYIADKN-TGAVVDASPPS  330 (370)
T ss_pred             CCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cC-eeEeccCC-ceEEEeCCChh
Confidence            222222111124556666666777788888765433221  11111123344433  22 34334333 34455544433


Q ss_pred             ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       271 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                       ......+....+.+.+.+-+ .+.+.+...++-+.+|+..
T Consensus       331 -~m~~~~g~~ti~~s~~v~~~-~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         331 -MMDKRPGRPTIGQSCDVSVD-TQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             -hcccccCcceEeeecceEEE-eeEEEEeecCCCEEEEEec
Confidence             22223333333444555555 4588888999999999863

>PHA03098 kelch-like protein; Provisional

Probab=96.70  E-value=0.18  Score=44.73  Aligned_cols=179  Identities=6%  Similarity=0.019  Sum_probs=84.5

Q ss_pred             EEEEEcCCC------EEEEEEcCCCceeEEeec---cccceEEEEEecCCCCeEEEEeCC-----CeEEEEeCCCCCce-
Q 021121          121 SFITSSWDD------TVKLWTVDRPTSVRTFKE---HAYCVYNATWNPRHSDVFCSASGD-----CTLRIWDVREMGST-  185 (317)
Q Consensus       121 ~l~~~~~dg------~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-  185 (317)
                      +++.|+.++      .+..||..+.+-. .+..   .......+..  + +.+++.|+.+     ..+..||..+.+=. 
T Consensus       297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~--~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        297 IYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF--N-NRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             EEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE--C-CEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            666666542      5778888765432 2211   1111222222  2 6777778765     34777887764311 


Q ss_pred             -eeeccCccceEEEEecCCCCcEEEEEecC------CcEEEEEccCCCccEEEEecCC--CceeEEEecCCCCeeEEeee
Q 021121          186 -MIIPAHEFEILACDWNKYDDCLIASASVD------KSIKIWDVRNYRVPIAVLNGHG--YAVRKVKFSPHRRNLLASCS  256 (317)
Q Consensus       186 -~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~  256 (317)
                       ..+...... .+++..  ++++++.|+.+      ..+..||..+.+-  .......  ..-.+++. .++. +++.|+
T Consensus       373 ~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~-~~~~-iyv~GG  445 (534)
T PHA03098        373 EPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW--SKGSPLPISHYGGCAIY-HDGK-IYVIGG  445 (534)
T ss_pred             CCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee--eecCCCCccccCceEEE-ECCE-EEEECC
Confidence             111111111 122222  66777777732      3578889876431  1111110  00112222 2444 666666


Q ss_pred             cC--------CeEEEEecccccce-eeeeecccceeEeEEEEeccCCeEEEeecC-----CcEEEEecCCC
Q 021121          257 YD--------MTVCLWDFMVEDAL-VGRYDHHTEFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGMD  313 (317)
Q Consensus       257 ~d--------~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~  313 (317)
                      .+        ..+.+||..+.+-. +..+....... +++. .+ +.+++.||.+     ..+.+||...+
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~-~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCI-FN-NKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEE-EC-CEEEEEcCCcCCcccceeEEEeCCCC
Confidence            43        23888898776511 11111111111 1221 23 6677777754     46777876653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.70  E-value=0.21  Score=39.14  Aligned_cols=182  Identities=13%  Similarity=0.108  Sum_probs=107.3

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      .+.|..  ++.+.-+++..    +...|+.+|+.++.  ......++..----.++...  +.+....-.++...+||.+
T Consensus        49 GL~~~~--~g~LyESTG~y----G~S~l~~~d~~tg~--~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   49 GLEFLD--DGTLYESTGLY----GQSSLRKVDLETGK--VLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             EEEEEE--TTEEEEEECST----TEEEEEEEETTTSS--EEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETT
T ss_pred             cEEecC--CCEEEEeCCCC----CcEEEEEEECCCCc--EEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccc
Confidence            567755  57788877752    35589999998765  22222222222122333443  3466666778999999986


Q ss_pred             CCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-----ccceEEEEEecCCCCeEE
Q 021121           92 LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-----AYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        92 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~  166 (317)
                      +-   +.+..+.- .+.=+.++  .++. .|+.......+.++|.++.+..+.+.-.     -..++.+.|- + +.+.|
T Consensus       119 tl---~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~-G~IyA  189 (264)
T PF05096_consen  119 TL---KKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N-GKIYA  189 (264)
T ss_dssp             TT---EEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T-TEEEE
T ss_pred             cc---eEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c-CEEEE
Confidence            54   55555442 34556666  4556 5566566779999999988777766532     2346677776 2 55665


Q ss_pred             EEeCCCeEEEEeCCCCCceeeec---------------cCccceEEEEecCCCCcEEEEEe
Q 021121          167 SASGDCTLRIWDVREMGSTMIIP---------------AHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      =.=....|...|..+++....+.               ....-.+.|+++|..+.+++||=
T Consensus       190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            55566678888888887665442               01234789999996777777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.64  E-value=0.31  Score=40.30  Aligned_cols=237  Identities=12%  Similarity=0.101  Sum_probs=117.3

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee----eccCCcceEEEEEecC---CCCEEEEEcC-C-----
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS----LHEHTREVHSADYNPT---RRDSFITSSW-D-----  128 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~~~-d-----  128 (317)
                      ..+.|+|.|++ .+ +++...|.|++++ ..+.....+..    ..........++++|+   .. .|..... .     
T Consensus         3 ~P~~~a~~pdG-~l-~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~-~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    3 NPRSMAFLPDG-RL-LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNG-YLYVYYTNADEDGG   78 (331)
T ss_dssp             SEEEEEEETTS-CE-EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC--EEEEEEEEE-TSSS
T ss_pred             CceEEEEeCCC-cE-EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCC-EEEEEEEcccCCCC
Confidence            35789999997 35 4556799999999 32211111211    2234567889999995   22 3333322 1     


Q ss_pred             ---CEEEEEEcCCC-------cee-EEeec---cccceEEEEEecCCCCeEEEEeCC-------------CeEEEEeCCC
Q 021121          129 ---DTVKLWTVDRP-------TSV-RTFKE---HAYCVYNATWNPRHSDVFCSASGD-------------CTLRIWDVRE  181 (317)
Q Consensus       129 ---g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~  181 (317)
                         ..|.-|....+       +.+ ..+..   .......|.|.|+ +.+.++.+..             |.|.-.+...
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD-G~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD-GKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-SEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC-CcEEEEeCCCCCcccccccccccceEEEecccC
Confidence               24555555443       111 11121   2344577999999 6666665443             3333334321


Q ss_pred             CC------------ceee-eccCccceEEEEecCCCCcEEEEEe-cCC--cEEEEEcc--------C-------------
Q 021121          182 MG------------STMI-IPAHEFEILACDWNKYDDCLIASAS-VDK--SIKIWDVR--------N-------------  224 (317)
Q Consensus       182 ~~------------~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~-~d~--~i~v~d~~--------~-------------  224 (317)
                      .-            .... -.++.. ...++|+|.++.++++=. .++  .|.+...-        .             
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             cCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            10            0001 112332 457899994366665422 222  23222110        0             


Q ss_pred             -----CCccEEEEecCCCceeEEEecCCCC------eeEEeeecCCeEEEEecccccceee---eeecccceeEeEEEEe
Q 021121          225 -----YRVPIAVLNGHGYAVRKVKFSPHRR------NLLASCSYDMTVCLWDFMVEDALVG---RYDHHTEFAVGVDMSV  290 (317)
Q Consensus       225 -----~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~  290 (317)
                           ...+...+..| ..+..+.|.....      .++++.-..+.|....+........   .+......+.++++.|
T Consensus       237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             cCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence                 00123334434 4566777764321      2455555566788777764432221   1233445799999999


Q ss_pred             ccCCeEEEeecCCcEE
Q 021121          291 LVEGLLASTGWDELVY  306 (317)
Q Consensus       291 ~~~~~l~s~~~dg~i~  306 (317)
                      | +.++++.+.+|.|+
T Consensus       316 D-G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 D-GALYVSDDSDGKIY  330 (331)
T ss_dssp             T-SEEEEEE-TTTTEE
T ss_pred             C-CeEEEEECCCCeEe
Confidence            9 78888877888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.61  E-value=0.35  Score=40.65  Aligned_cols=153  Identities=16%  Similarity=0.184  Sum_probs=80.5

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccc-----cCc-eEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGIL-----GNG-RVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~-----~~g-~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      ..+..|+|.+  ++++.++....+...     ..+ +|.+++-............+ +.......+++.+++  +++ +.
T Consensus        14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~   88 (367)
T TIGR02604        14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT   88 (367)
T ss_pred             CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence            4567899999  788888764221100     123 78777654332222222222 334456889998876  444 33


Q ss_pred             cCCeEEEE-EeCCCC----CCCCc-eeecc----CCcceEEEEEecCCCCEEEEEcC-------------------CCEE
Q 021121           81 ADGSVKIY-DTALPP----TANPI-RSLHE----HTREVHSADYNPTRRDSFITSSW-------------------DDTV  131 (317)
Q Consensus        81 ~dg~i~v~-~~~~~~----~~~~~-~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~v  131 (317)
                      .. .|..+ +.+...    ..+.+ ..+..    +......++|.|+|. +.++-+.                   .|.|
T Consensus        89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceE
Confidence            33 34433 433211    11111 11222    234577899999997 4443331                   1456


Q ss_pred             EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe
Q 021121          132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (317)
                      ..++..+++. ..+...-.....++|+|+ ++++++-.
T Consensus       167 ~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~-G~l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGKL-RVVAHGFQNPYGHSVDSW-GDVFFCDN  202 (367)
T ss_pred             EEEecCCCeE-EEEecCcCCCccceECCC-CCEEEEcc
Confidence            6666655443 233222334678999997 77776544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=96.58  E-value=0.27  Score=43.00  Aligned_cols=177  Identities=7%  Similarity=0.007  Sum_probs=84.2

Q ss_pred             EEEEEcCCC-----EEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCC--CeEEEEeCCCCCc--eeeec
Q 021121          121 SFITSSWDD-----TVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGD--CTLRIWDVREMGS--TMIIP  189 (317)
Q Consensus       121 ~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~--~~~~~  189 (317)
                      +++.|+.++     .+..||..+++-..  .+.........+.  -+ +.+.+.|+.+  ..+..||..+.+=  ...+.
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~-~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--AN-NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--EC-CEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            667776542     57778887654222  1111111112222  22 6777777754  3578888765421  11121


Q ss_pred             cCccceEEEEecCCCCcEEEEEecCC---cEEEEEccCCCccEEEEecCCCc--eeEEEecCCCCeeEEeeecCCeEEEE
Q 021121          190 AHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRNYRVPIAVLNGHGYA--VRKVKFSPHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       190 ~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~vw  264 (317)
                      ...... +++..  ++++.+.|+.++   .+..||.++.+  -.....-..+  -.+++ .-+++ +.+.|+   .+.+|
T Consensus       351 ~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~-~~~~~-IYv~GG---~~e~y  420 (480)
T PHA02790        351 KPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCAL-VFGRR-LFLVGR---NAEFY  420 (480)
T ss_pred             CCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEE-EECCE-EEEECC---ceEEe
Confidence            111111 22222  678888887654   46778876543  1111111000  01222 22444 566653   57789


Q ss_pred             ecccccc-eeeeeecccceeEeEEEEeccCCeEEEeecC-----CcEEEEecCCC
Q 021121          265 DFMVEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGMD  313 (317)
Q Consensus       265 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~  313 (317)
                      |..+++- .+..+....... +++.. + +.+.+.||.+     ..+..||...+
T Consensus       421 dp~~~~W~~~~~m~~~r~~~-~~~v~-~-~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDNP-ELIIV-D-NKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cCCCCcEeEcCCCCCCcccc-EEEEE-C-CEEEEECCcCCCcccceEEEEECCCC
Confidence            9877651 111121111111 22222 2 6778888754     35778887654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.17  Score=42.38  Aligned_cols=133  Identities=8%  Similarity=-0.030  Sum_probs=86.2

Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCC---ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMG---STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--  227 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--  227 (317)
                      +.+-|... ++.+ .+...|.+.-|-.....   ++..-...+++|.++.|++ |.+.+|+--.+.+|.+++....+.  
T Consensus        26 ngvFfDDa-Nkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDA-NKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccC-cceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhh
Confidence            44445443 3333 33344455555544322   2222223566899999999 999999999999999999843322  


Q ss_pred             -cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEec
Q 021121          228 -PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       228 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                       .....+..+..|....|+....  +|-.+..| +.+|.+...+..++..+.|...|.-..|.++
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccc
Confidence             1222333445688999997754  55555444 7888877766666777788888888899987

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.45  E-value=0.47  Score=40.26  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEEec---CCCCEEEEEcCCCEEEEEEcCCC--c---
Q 021121           70 ESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNP---TRRDSFITSSWDDTVKLWTVDRP--T---  140 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~iwd~~~~--~---  140 (317)
                      +++...+++|+..|.++||+....+.. ..+..-..-..+|..+..-+   ......++.-.-..+.+|.+...  .   
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            445568999999999999998544211 11222223467888877642   22223333455678888887321  1   


Q ss_pred             ----eeEEeeccc--cceEEEEEecC----CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE
Q 021121          141 ----SVRTFKEHA--YCVYNATWNPR----HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       141 ----~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                          .+..+..|.  .....++.-|-    +..++.+-+.||.+.+|+-+.....+.+.. -.-...+.+.+ ..+.+++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~-~tDsfvt  191 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP-RTDSFVT  191 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee-cCCEEEE
Confidence                111222222  22333333332    246888899999999999765433333332 22234567777 6777888


Q ss_pred             EecCCcEEEEEcc
Q 021121          211 ASVDKSIKIWDVR  223 (317)
Q Consensus       211 ~~~d~~i~v~d~~  223 (317)
                      ++.+..+.-|...
T Consensus       192 ~sss~~l~~Yky~  204 (418)
T PF14727_consen  192 ASSSWTLECYKYQ  204 (418)
T ss_pred             ecCceeEEEecHH
Confidence            8888888888764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.42  E-value=0.42  Score=39.47  Aligned_cols=239  Identities=17%  Similarity=0.208  Sum_probs=116.5

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-----ecCCCCeeEEEecCC--CCCeEEEEEc
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-----FDTADGVYDLAWSES--HDSLLIAAVA   81 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~--~~~~l~~~~~   81 (317)
                      ..++|+|.|  +++++++..       .|+|++++.+...  ...+..     .........++++|+  .+..|.+...
T Consensus         3 ~P~~~a~~p--dG~l~v~e~-------~G~i~~~~~~g~~--~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t   71 (331)
T PF07995_consen    3 NPRSMAFLP--DGRLLVAER-------SGRIWVVDKDGSL--KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT   71 (331)
T ss_dssp             SEEEEEEET--TSCEEEEET-------TTEEEEEETTTEE--CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred             CceEEEEeC--CCcEEEEeC-------CceEEEEeCCCcC--cceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence            468899999  688888754       8999999932221  122211     134567899999994  1123333332


Q ss_pred             -C--------CeEEEEEeCCCC-C---CCCc-eeecc---CCcceEEEEEecCCCCEEEEEcCC-------------CEE
Q 021121           82 -D--------GSVKIYDTALPP-T---ANPI-RSLHE---HTREVHSADYNPTRRDSFITSSWD-------------DTV  131 (317)
Q Consensus        82 -d--------g~i~v~~~~~~~-~---~~~~-~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~v  131 (317)
                       .        ..|.-|.+.... .   .+.+ .....   ....-..|.|.|++. ++++.+..             |.|
T Consensus        72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceE
Confidence             1        234444444320 0   0111 11111   233456699999997 54444332             344


Q ss_pred             EEEEcCCCc------------eeEEeeccccceEEEEEecCCCCeEEE-EeCCCeEEEEeCCCCC---------------
Q 021121          132 KLWTVDRPT------------SVRTFKEHAYCVYNATWNPRHSDVFCS-ASGDCTLRIWDVREMG---------------  183 (317)
Q Consensus       132 ~iwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~---------------  183 (317)
                      .-.+....-            ....+..--.....++|+|..+.++++ .+.++.=.|.-++.+.               
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~  230 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSG  230 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTS
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCC
Confidence            444432110            011111111236789999984444433 2223222222222111               


Q ss_pred             --------------ceeeeccCccceEEEEecC------CCCcEEEEEecCCcEEEEEccCCCccEE--E-EecCCCcee
Q 021121          184 --------------STMIIPAHEFEILACDWNK------YDDCLIASASVDKSIKIWDVRNYRVPIA--V-LNGHGYAVR  240 (317)
Q Consensus       184 --------------~~~~~~~~~~~v~~i~~~~------~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~-~~~~~~~v~  240 (317)
                                    +...+..| ..+..+.|.+      ..+.++++.-..+.|....+........  . +......+.
T Consensus       231 ~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~  309 (331)
T PF07995_consen  231 PPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPR  309 (331)
T ss_dssp             S-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EE
T ss_pred             CccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCce
Confidence                          11222222 3445555543      2455677666667888888865432111  1 223444789


Q ss_pred             EEEecCCCCeeEEeeecCCeE
Q 021121          241 KVKFSPHRRNLLASCSYDMTV  261 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i  261 (317)
                      .+++.|+|. ++++-+.+|.|
T Consensus       310 ~v~~~pDG~-Lyv~~d~~G~i  329 (331)
T PF07995_consen  310 DVAQGPDGA-LYVSDDSDGKI  329 (331)
T ss_dssp             EEEEETTSE-EEEEE-TTTTE
T ss_pred             EEEEcCCCe-EEEEECCCCeE
Confidence            999999998 66666677765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.31  E-value=0.65  Score=41.92  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             CeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCC-----------C------CCCCceeeccCCcceEEEEEe--cCCCCE
Q 021121           62 GVYDLAWSES-HDSLLIAAVADGSVKIYDTALP-----------P------TANPIRSLHEHTREVHSADYN--PTRRDS  121 (317)
Q Consensus        62 ~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~-----------~------~~~~~~~~~~~~~~v~~~~~~--~~~~~~  121 (317)
                      .|+.|....- +...|+++..||.|.+|.++.-           +      ..++...+. -...+++++++  ...+ +
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-l  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-L  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-E
Confidence            3555554432 2358899999999999976320           0      011222222 34588999998  6655 8


Q ss_pred             EEEEcCCCEEEEEEcCCC--ce-eEEeeccccceEEEEEecCC--CC---eEEEEeCCCeEEEEeC
Q 021121          122 FITSSWDDTVKLWTVDRP--TS-VRTFKEHAYCVYNATWNPRH--SD---VFCSASGDCTLRIWDV  179 (317)
Q Consensus       122 l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~i~i~d~  179 (317)
                      +|+++....|.||-....  +. ...-..+...|.+++|.++.  +.   .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888888765432  11 11111356779999998864  22   7778899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.13  E-value=0.69  Score=38.91  Aligned_cols=140  Identities=10%  Similarity=0.075  Sum_probs=74.8

Q ss_pred             cceEEEEEecCCCCEEEEEc-----------CCC-EEEEEEcCC--Cc--eeEEeeccccceEEEEEecCCCCeEEEEeC
Q 021121          107 REVHSADYNPTRRDSFITSS-----------WDD-TVKLWTVDR--PT--SVRTFKEHAYCVYNATWNPRHSDVFCSASG  170 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  170 (317)
                      .....|+|.++|. ++++-.           ..+ .|.+++-.+  ++  ....+...-.....+++.++ + +++ +..
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G-VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C-EEE-eCC
Confidence            3456788888887 444432           223 777776543  22  22334333445688999887 5 444 444


Q ss_pred             CCeEEEEeCCCC-----Cceee---ecc----CccceEEEEecCCCCcEEEEEecC-------------------CcEEE
Q 021121          171 DCTLRIWDVREM-----GSTMI---IPA----HEFEILACDWNKYDDCLIASASVD-------------------KSIKI  219 (317)
Q Consensus       171 dg~i~i~d~~~~-----~~~~~---~~~----~~~~v~~i~~~~~~~~~l~~~~~d-------------------~~i~v  219 (317)
                      ....++.|....     +....   +..    +......++|.| ++.+.++-+..                   +.|..
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            433334454321     11111   221    123467899999 88777655421                   34555


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                      +|....+  ...+...-.....++|+|++. ++++
T Consensus       169 ~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t  200 (367)
T TIGR02604       169 YNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC  200 (367)
T ss_pred             EecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence            5555433  222222223456899999987 5554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.12  E-value=0.042  Score=29.40  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             cceEEEEEecCCC--CeEEEEeCCCeEEEEeCCC
Q 021121          150 YCVYNATWNPRHS--DVFCSASGDCTLRIWDVRE  181 (317)
Q Consensus       150 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~  181 (317)
                      +.+.++.|+|...  .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998756  7999999999999999995

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.07  E-value=0.33  Score=43.75  Aligned_cols=122  Identities=9%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC-------C---------CCcceeeeeecCCCCeeEEEec--
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP-------A---------APALTELVAFDTADGVYDLAWS--   69 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~-------~---------~~~~~~~~~~~~~~~v~~~~~~--   69 (317)
                      ..|.-|....-....+++++.+      ||.|.+|..+.       .         ....++...+......+.++++  
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~D------dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~  174 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTD------DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY  174 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEec------CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec
Confidence            3455555555455666666665      99999997631       1         0111223333456678999998  


Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCC--CC---EEEEEcCCCEEEEEEc
Q 021121           70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR--RD---SFITSSWDDTVKLWTV  136 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~v~iwd~  136 (317)
                      ... +++|++++...|.||-+...........-..|...|.+|+|.++.  ..   .+++++-.|.+.+|++
T Consensus       175 ~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  175 KKS-RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             Ccc-eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            655 699999999999999876532222222122467789999997654  22   6778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.99  E-value=0.045  Score=29.27  Aligned_cols=33  Identities=36%  Similarity=0.306  Sum_probs=27.1

Q ss_pred             CceeEEEecCCCC--eeEEeeecCCeEEEEecccc
Q 021121          237 YAVRKVKFSPHRR--NLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       237 ~~v~~~~~~~~~~--~~l~~~~~d~~i~vwd~~~~  269 (317)
                      +.++++.|+|...  .+|+.+-..|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3689999997554  58888888899999999863

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.95  E-value=1.3  Score=40.63  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=51.3

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC---------CCcceeeee---------ecCCCCeeEE
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA---------APALTELVA---------FDTADGVYDL   66 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~---------~~~~~~~~~---------~~~~~~v~~~   66 (317)
                      ...+.|..+..||  .+.+++-.+       ...|.|..+...         +........         ......|..+
T Consensus        82 ~~~f~v~~i~~n~--~g~~lal~G-------~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv  152 (717)
T PF10168_consen   82 PPLFEVHQISLNP--TGSLLALVG-------PRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQV  152 (717)
T ss_pred             CCceeEEEEEECC--CCCEEEEEc-------CCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEE
Confidence            3457889999999  566555554       335666565431         000001111         1344578999


Q ss_pred             EecCCC--CCeEEEEEcCCeEEEEEeCCC
Q 021121           67 AWSESH--DSLLIAAVADGSVKIYDTALP   93 (317)
Q Consensus        67 ~~~~~~--~~~l~~~~~dg~i~v~~~~~~   93 (317)
                      .|+|.+  +..|++-..|+++++||+...
T Consensus       153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  153 RWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            999974  468888889999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=95.94  E-value=0.89  Score=39.82  Aligned_cols=179  Identities=6%  Similarity=-0.002  Sum_probs=81.9

Q ss_pred             CeEEEEEcCC-----eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC--CEEEEEEcCCCceeE--E
Q 021121           74 SLLIAAVADG-----SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD--DTVKLWTVDRPTSVR--T  144 (317)
Q Consensus        74 ~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~--~  144 (317)
                      .++++|+.++     .+..||.... .+..+..+.........+.  -++. +.+.|+.+  ..+..||..+++-..  .
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNK-LYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCE-EEEECCcCCCCceEEEECCCCeEEECCC
Confidence            4667776543     4666776543 2222222222111122222  2444 66777653  357788876543211  1


Q ss_pred             eeccccceEEEEEecCCCCeEEEEeCCC---eEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          145 FKEHAYCVYNATWNPRHSDVFCSASGDC---TLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      +............   ++.+.+.|+.++   .+..||.++.+=..  .+....... +++. - ++.+.+.|+   .+.+
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~-~-~~~IYv~GG---~~e~  419 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALV-F-GRRLFLVGR---NAEF  419 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEE-E-CCEEEEECC---ceEE
Confidence            1111111112222   267777777553   46788877542111  111111111 2221 1 566777664   5678


Q ss_pred             EEccCCCccEEEEec--C-CCceeEEEecCCCCeeEEeeecC-----CeEEEEeccccc
Q 021121          220 WDVRNYRVPIAVLNG--H-GYAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVED  270 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  270 (317)
                      ||.++.+  -.....  + .... +++.. +++ +.+.||.+     ..+..||..+++
T Consensus       420 ydp~~~~--W~~~~~m~~~r~~~-~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        420 YCESSNT--WTLIDDPIYPRDNP-ELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ecCCCCc--EeEcCCCCCCcccc-EEEEE-CCE-EEEECCcCCCcccceEEEEECCCCe
Confidence            8887643  222111  1 1122 22222 455 67777754     346666665543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.92  E-value=0.41  Score=42.64  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=66.5

Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec--CCCCeeEEeeecCCeEEEEecc-----
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS--PHRRNLLASCSYDMTVCLWDFM-----  267 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~d~~i~vwd~~-----  267 (317)
                      +.-+.-+. .++..++-+....+.|||.+.........-.....|..+.|.  |+++. +.+.|....|.++--.     
T Consensus        32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchhhh
Confidence            33444444 444444544556799999988663232222446789999885  67874 6666678888887531     


Q ss_pred             ccc---ceeee--eeccc-ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          268 VED---ALVGR--YDHHT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       268 ~~~---~~~~~--~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ...   ..+..  +..+. .+|.+..|.++ +.+++++  ++.+.|++-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~-G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKD-GTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecC-CeEEEEe--CCEEEEECCC
Confidence            111   11122  22233 57999999997 5444444  3567777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.90  E-value=0.81  Score=37.88  Aligned_cols=151  Identities=11%  Similarity=-0.016  Sum_probs=82.1

Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEE-eCCCCCceeee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIW-DVREMGSTMII-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      ...+..+.+.|+ +.++ ..+..|.+..- | ..++.-... ......++++.+.+ +++.++++ ..|.+++=....+.
T Consensus       172 ~g~~~~i~~~~~-g~~v-~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPD-GKYV-AVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCC-CeEE-EEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCC
Confidence            456888999887 5555 44555655432 2 112222222 23345788999998 77777665 45766432233222


Q ss_pred             ccEEEEec----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee---ecccceeEeEEEEeccCCeEEEe
Q 021121          227 VPIAVLNG----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY---DHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       227 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      . -.....    ....+..+.+.|++. +++ ++.+|.+.. ....++. ....   ..-....+.+.|..+ + ..+..
T Consensus       247 s-W~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  319 (334)
T PRK13684        247 S-WSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDP-E-KGFVL  319 (334)
T ss_pred             c-cccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCC-C-ceEEE
Confidence            1 111111    123578899999876 444 455775543 3333332 1222   122235777887764 4 44556


Q ss_pred             ecCCcEEEEecC
Q 021121          300 GWDELVYVWQQG  311 (317)
Q Consensus       300 ~~dg~i~~w~~~  311 (317)
                      +..|.|.-|+-.
T Consensus       320 G~~G~il~~~~~  331 (334)
T PRK13684        320 GQRGVLLRYVGS  331 (334)
T ss_pred             CCCceEEEecCC
Confidence            678988877644

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.81  E-value=0.71  Score=36.50  Aligned_cols=150  Identities=15%  Similarity=0.076  Sum_probs=87.9

Q ss_pred             ceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe-CCCCCc
Q 021121          108 EVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGS  184 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~  184 (317)
                      .+.+.++++++..+.+..  .....+.++..  +....... ....+..-.|+++ +.+.+....+...+++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcc
Confidence            688899999998444444  23345555544  33333322 2336888899998 77777766666666663 333322


Q ss_pred             e-eeecc--CccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCC--------ccEEEEecCCCceeEEEecCCCCe
Q 021121          185 T-MIIPA--HEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYR--------VPIAVLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       185 ~-~~~~~--~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~  250 (317)
                      . ..+..  ....|.++.++| ++..++...   .++.|.+=-+....        .+..........++.+.|.+++. 
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-  178 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-  178 (253)
T ss_pred             eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-
Confidence            1 12221  122899999999 888777665   34667766543211        11222223346889999999998 


Q ss_pred             eEEeee-cCCeEEE
Q 021121          251 LLASCS-YDMTVCL  263 (317)
Q Consensus       251 ~l~~~~-~d~~i~v  263 (317)
                      +++.+. .++.+..
T Consensus       179 L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  179 LVVLGRSAGGPVVR  192 (253)
T ss_pred             EEEEeCCCCCceeE
Confidence            454444 3443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.99  Score=38.10  Aligned_cols=141  Identities=11%  Similarity=0.139  Sum_probs=88.1

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~  114 (317)
                      .|.+.=|.....++....-......++|.++.|++|. +.+|+--.+.+|.+++...++.. ......+.....|....|
T Consensus        42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W  120 (657)
T KOG2377|consen   42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW  120 (657)
T ss_pred             cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence            4566677776665544444455677799999999997 69999999999999998543111 111222334556899999


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeEE-EEe-CCCeEEEEeCCC
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFC-SAS-GDCTLRIWDVRE  181 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~-~dg~i~i~d~~~  181 (317)
                      ....  -++.....| +-+|..... ..++..+.++..|+=..|.++ .+.++ +.+ ..+.+.=+-+++
T Consensus       121 ~~s~--e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~e-t~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  121 TSST--EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPE-TAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             ecCe--eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccc-cceEeeeccccccccccEEEee
Confidence            8764  455555433 555554432 334455667778888889888 44433 333 333444444444

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.77  E-value=0.44  Score=42.47  Aligned_cols=105  Identities=18%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec--CCCCCeEEEEEcCCeEEEEEeC------
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS--ESHDSLLIAAVADGSVKIYDTA------   91 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~v~~~~------   91 (317)
                      -+++++....      ...+.|||.....  +.....+...+.|.++.|.  |+++ .+++.+....|.+|--.      
T Consensus        40 ~~k~a~V~~~------~~~LtIWD~~~~~--lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   40 IKKIAVVDSS------RSELTIWDTRSGV--LEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cCcEEEEECC------CCEEEEEEcCCcE--EEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhhhc
Confidence            3555555443      5689999998765  4444444668899999996  5775 45555567788888532      


Q ss_pred             CCCCCCCceee--ccCC-cceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           92 LPPTANPIRSL--HEHT-REVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        92 ~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      ......++..+  ..|. .+|.+..|.++|.  +++|+ .+.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence            11122333332  2343 6899999999985  55544 357888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.77  E-value=0.26  Score=46.73  Aligned_cols=153  Identities=14%  Similarity=0.155  Sum_probs=92.1

Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec--------CCCCcEEEEEecCCcEEEEEccC
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN--------KYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~--------~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      ..+-+-|.-+..-  .+.|+.+.+|+.+++.....+.+.+..|..+..-        |.-..+|+.++ --.|.++-+..
T Consensus        82 ~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~  158 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSF  158 (1311)
T ss_pred             eeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEe
Confidence            3444445423333  2458899999999987777777766666666532        21122333333 44566654432


Q ss_pred             CCcc--E------EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc--c----------------------ce
Q 021121          225 YRVP--I------AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE--D----------------------AL  272 (317)
Q Consensus       225 ~~~~--~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~--~----------------------~~  272 (317)
                      .+.+  .      ..+...+..|+++....+|+ ++++ |.||  .+|.+.-.  .                      .+
T Consensus       159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             ccccCcccccccceeeecCCceEEEEEeccCCc-EEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            2110  1      12223356789999888887 5554 5566  45554211  0                      11


Q ss_pred             eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          273 VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       273 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ......+..+|..+..... .+++.+-+..|+|.+|++..+
T Consensus       235 ~~~~~~~~dpI~qi~ID~S-R~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNS-RNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hcCCCCCCCcceeeEeccc-cceeeeeccCceEEEEEccCC
Confidence            1122256779999999877 679999999999999999874

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.77  E-value=0.57  Score=40.05  Aligned_cols=150  Identities=13%  Similarity=0.074  Sum_probs=90.5

Q ss_pred             EEEecCCCCeEE-EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-------CCcEEEEEecCCcEEEEEccCCC
Q 021121          155 ATWNPRHSDVFC-SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-------DDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       155 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-------~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      +-.+.++..+++ .++....++-.|++.|+.+.....+..-  -+.+.|.       ..+.| +|-.+..|.-.|.|-..
T Consensus       472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~g  548 (776)
T COG5167         472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARG  548 (776)
T ss_pred             ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccC
Confidence            333333345444 4666677888999999988888766654  4666662       12233 34456667777776543


Q ss_pred             ccEEEEec----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121          227 VPIAVLNG----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       227 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      ..+.....    ......+..-...|  +++.++..|-|++||-- +......+.+....|..+..+.+|..+|+||  .
T Consensus       549 NKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k  623 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC--K  623 (776)
T ss_pred             CceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee--c
Confidence            22222211    11122233333333  79999999999999944 3334455667778899999999844455555  3


Q ss_pred             CcEEEEecCC
Q 021121          303 ELVYVWQQGM  312 (317)
Q Consensus       303 g~i~~w~~~~  312 (317)
                      ..+.+-|+..
T Consensus       624 ~yllL~d~~i  633 (776)
T COG5167         624 NYLLLTDVPI  633 (776)
T ss_pred             ceEEEEeccc
Confidence            5566666543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.74  E-value=0.00094  Score=55.50  Aligned_cols=144  Identities=12%  Similarity=0.170  Sum_probs=98.0

Q ss_pred             cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee
Q 021121          107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM  186 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (317)
                      .......|.|.+.+ ++.++.+..+..||-. ++...... .++....++|..++...++.+-..+.+.+||+.+.... 
T Consensus        35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-  110 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-  110 (615)
T ss_pred             cccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence            33445678888884 7777778888899854 44443433 45567788898876667777888899999999764221 


Q ss_pred             eec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121          187 IIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       187 ~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      ++. +....-.-+.|++ ....++.+...|.+.+++....+. ....-.|...++++++.+.+.  .+.++.|
T Consensus       111 qLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd~--vil~dcd  179 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRR-IIVMGKHQRRGTQIAVTLEDY--VILCDCD  179 (615)
T ss_pred             HHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhh-hhhhcccccceeEEEecccce--eeecCcH
Confidence            121 1111112277888 888888888999999999988664 333333888899999999874  4444444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.48  E-value=0.0042  Score=55.63  Aligned_cols=79  Identities=9%  Similarity=0.169  Sum_probs=47.0

Q ss_pred             CceEEEEecCCCCCcceee----eeecCCCCeeEEEecC---CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcc
Q 021121           36 NGRVHVLDLSPAAPALTEL----VAFDTADGVYDLAWSE---SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTRE  108 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~  108 (317)
                      -|.+.+|+++--+..+.+.    ........+.-+.|.|   +. .++..+-.++.|++...+..    ....+.+|...
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra----~~~l~rsHs~~  226 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRA----LRSLFRSHSQR  226 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc-ceeeeccCCCceeEeeechH----HHHHHHhcCCC
Confidence            4678899986432222211    1112233445566665   43 57888888899999887653    22445568888


Q ss_pred             eEEEEEecCCC
Q 021121          109 VHSADYNPTRR  119 (317)
Q Consensus       109 v~~~~~~~~~~  119 (317)
                      +..++|...|-
T Consensus       227 ~~d~a~~~~g~  237 (1283)
T KOG1916|consen  227 VTDMAFFAEGV  237 (1283)
T ss_pred             cccHHHHhhch
Confidence            87777655543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=1.9  Score=38.82  Aligned_cols=197  Identities=14%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      ++..++..+|..-.-+.  +.--.|+||+...    ..+....-..+++..+.|+.+.  .|+....+|++++|++-.. 
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG----~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge-  114 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISG----QLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGE-  114 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEeccc----cchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchh-
Confidence            34445555553211111  3345688888653    4444444344588899999875  5888889999999998643 


Q ss_pred             eeEE--e--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---CccceEEEEecCCC--CcEEEEE
Q 021121          141 SVRT--F--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---HEFEILACDWNKYD--DCLIASA  211 (317)
Q Consensus       141 ~~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~~~~~--~~~l~~~  211 (317)
                      .+..  .  ......|..+.+..+ |  ++.-..+|.+.+-.-.....+..++.   ...+-.|-...+..  ...++-.
T Consensus       115 ~ie~~svg~e~~~~~I~ec~~f~~-G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v  191 (829)
T KOG2280|consen  115 FIESNSVGFESQMSDIVECRFFHN-G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDV  191 (829)
T ss_pred             hhcccccccccccCceeEEEEecC-c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEee
Confidence            2222  1  222334555555543 3  33334445554433222212222221   11111222111101  1111111


Q ss_pred             ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ...-...++-..........+....+.+..+..||+.+ +|+--...|.|.+-+....+
T Consensus       192 ~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  192 DVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             chhhhhcccceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecchhh
Confidence            10001122222222222233333345678899999998 68888889999888876655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.42  E-value=0.37  Score=40.76  Aligned_cols=86  Identities=19%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEE-EEEecCCC---------------C--e
Q 021121          103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN-ATWNPRHS---------------D--V  164 (317)
Q Consensus       103 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~---------------~--~  164 (317)
                      ......+.+++.+|.+. +.++...=|.|.++|+.++..++.+++..+.-.. +.......               .  +
T Consensus       304 ~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  304 PDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             ccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            34556688999999987 7777777799999999999888877765432111 11000000               1  2


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeec
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIP  189 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~  189 (317)
                      ++-+-.-|.|.+|.++++..+..+.
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEE
Confidence            3345678899999999887766554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.87  Score=34.16  Aligned_cols=174  Identities=13%  Similarity=0.123  Sum_probs=91.2

Q ss_pred             CeEEEEEc--CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccc
Q 021121           74 SLLIAAVA--DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC  151 (317)
Q Consensus        74 ~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  151 (317)
                      .++.+.+.  ...|++||+.++   +.+....-....+..=-...-+.....-.-.+|.-..+|.++.+++..+. .++.
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~g---q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge  132 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTG---QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE  132 (262)
T ss_pred             EEEEeccccccceeEEEeccCc---eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence            45555543  346999999866   32222111111111101111122233334457888899998888877765 3455


Q ss_pred             eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--Ccc---ceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121          152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEF---EILACDWNKYDDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      -+.++..   +..++.+....+++.-|.++.....++..  ...   .++.+.|-  +|.++|-.-.+..|...|..+++
T Consensus       133 GWgLt~d---~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         133 GWGLTSD---DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             ceeeecC---CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence            5666543   33355555566777777765544333221  111   23344444  45444444444444444444443


Q ss_pred             c-----------cEEEEecCCCceeEEEecCCCCeeEEeee
Q 021121          227 V-----------PIAVLNGHGYAVRKVKFSPHRRNLLASCS  256 (317)
Q Consensus       227 ~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  256 (317)
                      .           .+..-..|....+.+++.|++.+++++|-
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            2           11122234556789999999877888874

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.9  Score=34.10  Aligned_cols=173  Identities=9%  Similarity=0.029  Sum_probs=90.2

Q ss_pred             EEEEEcC--CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEE
Q 021121          121 SFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC  198 (317)
Q Consensus       121 ~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i  198 (317)
                      ++.+.+.  ...|++||+.+++.+..-+-....+..--...-+.....-.-.+|.-..+|.++.+.+..+. .++.-..+
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgL  136 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGL  136 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceee
Confidence            6666554  34799999999987766543321121111111112333345568888899998887776665 33344555


Q ss_pred             EecCCCCcEEEEEecCCcEEEEEccCCCccEEE-EecCCCc---eeEEEecCCCCeeEEeeecCCeEEEEeccccc----
Q 021121          199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-LNGHGYA---VRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----  270 (317)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~---v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~----  270 (317)
                      +.   ++.-|+.+....+++.-|.++....-.. ......+   ++.+.|- +|. +.|-.=.+..|...|..+++    
T Consensus       137 t~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV~~w  211 (262)
T COG3823         137 TS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRVVAW  211 (262)
T ss_pred             ec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcEEEE
Confidence            54   3333555555556777676654321111 1111122   2334443 333 33333333334444444443    


Q ss_pred             -------ceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          271 -------ALVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       271 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                             .....-..|....++|++.|+.++++++|
T Consensus       212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence                   11122223455678999999955677776

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.19  E-value=1.6  Score=36.50  Aligned_cols=191  Identities=16%  Similarity=0.178  Sum_probs=104.8

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec----CCCCCe-EEEEEc-C---CeEEEEEe
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS----ESHDSL-LIAAVA-D---GSVKIYDT   90 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~~~~~-d---g~i~v~~~   90 (317)
                      ...+++++.+      .+-+.+||++...  ++.+   . .+..+.+..-    -.+... |++++. +   ..|++|.+
T Consensus        67 ~kSlIigTdK------~~GL~VYdL~Gk~--lq~~---~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i  134 (381)
T PF02333_consen   67 AKSLIIGTDK------KGGLYVYDLDGKE--LQSL---P-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI  134 (381)
T ss_dssp             GG-EEEEEET------TTEEEEEETTS-E--EEEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred             ccceEEEEeC------CCCEEEEcCCCcE--EEee---c-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence            4557777776      7889999998654  2222   1 2233333221    123222 444443 2   46999998


Q ss_pred             CCCCCCCCceeec-------cCCcceEEEEEe--c-CCCCEEEEEcCCCEEEEEEcC---CC----ceeEEeeccccceE
Q 021121           91 ALPPTANPIRSLH-------EHTREVHSADYN--P-TRRDSFITSSWDDTVKLWTVD---RP----TSVRTFKEHAYCVY  153 (317)
Q Consensus        91 ~~~~~~~~~~~~~-------~~~~~v~~~~~~--~-~~~~~l~~~~~dg~v~iwd~~---~~----~~~~~~~~~~~~v~  153 (317)
                      ....  ..+..+.       .....+..+|+.  + ++..+++....+|.+..|.+.   .+    +.++++.. .+.+.
T Consensus       135 d~~~--g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~E  211 (381)
T PF02333_consen  135 DPDT--GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPE  211 (381)
T ss_dssp             ETTT--TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EE
T ss_pred             cCCC--CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcce
Confidence            7421  1222221       122346777774  3 355577788889999888775   22    34666664 44688


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCC--ceeee---c--cCccceEEEEec--CC-CCcEEEEEecCCcEEEEEcc
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMG--STMII---P--AHEFEILACDWN--KY-DDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~---~--~~~~~v~~i~~~--~~-~~~~l~~~~~d~~i~v~d~~  223 (317)
                      .+..... ...|+.+-++.-|.-|+.+...  ....+   .  .....+-.++.-  +. .+.+|++.-.+++..+|+.+
T Consensus       212 GCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  212 GCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             EEEEETT-TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred             EEEEecc-cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence            8888877 7788889999888888876321  11111   1  123456566553  21 23345555566789999987


Q ss_pred             CCC
Q 021121          224 NYR  226 (317)
Q Consensus       224 ~~~  226 (317)
                      ...
T Consensus       291 ~~~  293 (381)
T PF02333_consen  291 GPN  293 (381)
T ss_dssp             TT-
T ss_pred             CCC
Confidence            643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.14  E-value=2.9  Score=39.27  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC-----CCeEEEEEcCCeEEEEEeCCCC
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH-----DSLLIAAVADGSVKIYDTALPP   94 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~v~~~~~~~   94 (317)
                      ..+++++.+       +|.+..+.....+..............+.|+++.++.     .++++.++.|+.++++.+... 
T Consensus       549 r~qiVvalS-------ngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~-  620 (1205)
T KOG1898|consen  549 RRQIVVALS-------NGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS-  620 (1205)
T ss_pred             ceEEEEEcc-------CCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc-
Confidence            456666665       6677777776444222222223445678999998764     257999999999999998744 


Q ss_pred             CCCCcee--eccCCcceEEEEEec---CC-----CCEEEEEcCCCEEEEE
Q 021121           95 TANPIRS--LHEHTREVHSADYNP---TR-----RDSFITSSWDDTVKLW  134 (317)
Q Consensus        95 ~~~~~~~--~~~~~~~v~~~~~~~---~~-----~~~l~~~~~dg~v~iw  134 (317)
                        ..+..  .++-..++.++.+-+   ++     ..++.+|-.+|.+.-+
T Consensus       621 --d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~  668 (1205)
T KOG1898|consen  621 --DCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF  668 (1205)
T ss_pred             --ceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence              22222  223344444444422   22     2355666666655443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.13  E-value=1  Score=34.03  Aligned_cols=135  Identities=18%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---C---eEEEE-EeCCC-CCCCCce-eec---
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---G---SVKIY-DTALP-PTANPIR-SLH---  103 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g---~i~v~-~~~~~-~~~~~~~-~~~---  103 (317)
                      ...|.+|++....  .+.+..+..-+.|..+.++..|+ ++++--.+   .   .+|+| +.+.. ....++. .+-   
T Consensus        37 g~~Vev~~l~~~~--~~~~~~F~Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~  113 (215)
T PF14761_consen   37 GCKVEVYDLEQEE--CPLLCTFSTVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHR  113 (215)
T ss_pred             CCEEEEEEcccCC--CceeEEEcchhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccc
Confidence            5689999998433  56677777888999999999985 88775433   2   56665 22111 0111111 010   


Q ss_pred             ------------------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eE-----Eee-----c-cccceE
Q 021121          104 ------------------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VR-----TFK-----E-HAYCVY  153 (317)
Q Consensus       104 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~-----~~~-----~-~~~~v~  153 (317)
                                        .-+.++.+++..|... -|+.|+ ++.+.+|.+..... ..     .+.     . ..-.+.
T Consensus       114 v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~  191 (215)
T PF14761_consen  114 VTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPT  191 (215)
T ss_pred             cccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCceEE
Confidence                              1234667777777666 466666 46888998764322 11     111     1 122355


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      .+++.   +.++|..+ +-.++++.+
T Consensus       192 ~v~ic---~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  192 QVAIC---EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEEEE---eeEEEEec-CCEEEEEEE
Confidence            66665   44565444 445666554

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.02  E-value=1.8  Score=36.12  Aligned_cols=12  Identities=8%  Similarity=0.055  Sum_probs=8.6

Q ss_pred             CEEEEEEcCCCc
Q 021121          129 DTVKLWTVDRPT  140 (317)
Q Consensus       129 g~v~iwd~~~~~  140 (317)
                      ..+.+||..+.+
T Consensus       168 ~~v~~YDp~t~~  179 (346)
T TIGR03547       168 KNVLSYDPSTNQ  179 (346)
T ss_pred             ceEEEEECCCCc
Confidence            468888987653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.02  E-value=3  Score=38.75  Aligned_cols=192  Identities=10%  Similarity=-0.002  Sum_probs=106.2

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccc--------eEEEEEecC---------------CCCeEEEEeCCCeEEEE
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYC--------VYNATWNPR---------------HSDVFCSASGDCTLRIW  177 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~---------------~~~~l~~~~~dg~i~i~  177 (317)
                      .++.++.++.|.-.|.++++.+.++......        ...+.+...               ....++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            6788888899999999999988777532210        122333211               13477788899999999


Q ss_pred             eCCCCCceeeeccCccce-------------EEEEecCC-CCcEEEEEec----------CCcEEEEEccCCCccEEEEe
Q 021121          178 DVREMGSTMIIPAHEFEI-------------LACDWNKY-DDCLIASASV----------DKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       178 d~~~~~~~~~~~~~~~~v-------------~~i~~~~~-~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~  233 (317)
                      |.++++....+.. ...+             ..+.-.|. .+..+++|+.          +|.|+-+|.++++..-....
T Consensus       276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            9999988866532 1111             01111110 1334555542          68899999999875322221


Q ss_pred             cC---------------C-Cce-eEEEecCCCCeeEEeee------------------cCCeEEEEecccccceeeeeec
Q 021121          234 GH---------------G-YAV-RKVKFSPHRRNLLASCS------------------YDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       234 ~~---------------~-~~v-~~~~~~~~~~~~l~~~~------------------~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                      +.               . ..+ ..++++|+.. +++.+.                  ..+.|.-.|.++++..-.....
T Consensus       355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             CCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            10               0 011 2345555444 232211                  2345666788777743322221


Q ss_pred             ccc--------eeEeEEEEeccCC---eEEEeecCCcEEEEecCCCC
Q 021121          279 HTE--------FAVGVDMSVLVEG---LLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       279 ~~~--------~v~~~~~~~~~~~---~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |..        ...-+.+...+++   .++.++.+|.+.+.|-.+.+
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            211        1111222221132   78889999999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.97  E-value=0.0028  Score=52.82  Aligned_cols=146  Identities=13%  Similarity=0.181  Sum_probs=97.9

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV  142 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  142 (317)
                      .....|-|.+.+ ++.++.+..+..||-..    +..... ...+....++|..++...++.+-..+.+.+||+.+....
T Consensus        37 pi~~~w~~e~~n-lavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   37 PIIHRWRPEGHN-LAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             cceeeEecCCCc-eehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            344567787754 77777888899998542    222222 235667788998888766777788899999999764221


Q ss_pred             E-Eee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          143 R-TFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       143 ~-~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      . .+. .+...  -+.|++. ...++.+...|.+.+++..+.+.....-.|...+.++++.+ .+ +.+.++.|..+.+
T Consensus       111 qLE~gg~~s~s--ll~wsKg-~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-Ed-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  111 QLESGGTSSKS--LLAWSKG-TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-ED-YVILCDCDNTLSV  184 (615)
T ss_pred             HHhccCcchHH--HHhhccC-CccccccccccceEEEeccchhhhhhhcccccceeEEEecc-cc-eeeecCcHHHHHH
Confidence            1 111 12222  2678876 66777888999999999887766655555888899999998 44 4444555554433

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.90  E-value=2  Score=36.25  Aligned_cols=12  Identities=8%  Similarity=0.039  Sum_probs=8.6

Q ss_pred             CEEEEEEcCCCc
Q 021121          129 DTVKLWTVDRPT  140 (317)
Q Consensus       129 g~v~iwd~~~~~  140 (317)
                      ..+.+||..+.+
T Consensus       189 ~~v~~YD~~t~~  200 (376)
T PRK14131        189 KEVLSYDPSTNQ  200 (376)
T ss_pred             ceEEEEECCCCe
Confidence            358889987654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.76  E-value=0.89  Score=31.47  Aligned_cols=115  Identities=14%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             EEecCCCCCeEEEEEcCCeEEEEEeCCCC-----CCCCceeeccCCcceEEEEEec----CCCCEEEEEcCCCEEEEEEc
Q 021121           66 LAWSESHDSLLIAAVADGSVKIYDTALPP-----TANPIRSLHEHTREVHSADYNP----TRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        66 ~~~~~~~~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~v~iwd~  136 (317)
                      -+|....+ .|++++..|.|.|.+.....     ....+..+. -...|++++-.+    ++...|+.|+ ...+..||+
T Consensus         4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            35666654 78888889999999876432     112233333 456777776543    2345777777 468999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCC--CCeEEEEeCCCeEEEEeCCCCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRH--SDVFCSASGDCTLRIWDVREMGS  184 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~  184 (317)
                      .....+..-. -...++++.+-.-+  ..-++..+.+..|.-||.+..+.
T Consensus        81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            8876554333 34557777663221  23344555577888888664443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.71  E-value=0.025  Score=51.02  Aligned_cols=179  Identities=12%  Similarity=0.087  Sum_probs=100.2

Q ss_pred             CCCEEEEEEcCCCce-eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC--CCceee-----eccCccceEEE
Q 021121          127 WDDTVKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE--MGSTMI-----IPAHEFEILAC  198 (317)
Q Consensus       127 ~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~-----~~~~~~~v~~i  198 (317)
                      ..+.+++-+..+... -..+++..+.+-.+.|...+...+.  -.-|.+.+||+.-  |+....     ......++.-+
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            345677766544321 1223456677888887654333332  3457788998763  332222     22334455666


Q ss_pred             EecCC--CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE-----------ecCCCCeeEEeeecCCeEEEEe
Q 021121          199 DWNKY--DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK-----------FSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       199 ~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      .|.|.  +.-++..+..++.|++........  ..+.+|...+..++           .+|||. .++.+..||.++.|.
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQ  263 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceee
Confidence            67663  445666677788888887765432  34445766555543           589998 799999999998887


Q ss_pred             ccccc----ceeeeeecccc-eeEeEEEEecc------C--CeEEEee-cCCcEEEEec
Q 021121          266 FMVED----ALVGRYDHHTE-FAVGVDMSVLV------E--GLLASTG-WDELVYVWQQ  310 (317)
Q Consensus       266 ~~~~~----~~~~~~~~~~~-~v~~~~~~~~~------~--~~l~s~~-~dg~i~~w~~  310 (317)
                      +.-..    .++...+.|.+ +-.|.-+..+.      +  .++++++ ....+++|.-
T Consensus       264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            64322    23444555552 22222232210      0  1344443 4567888864

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.69  E-value=1.4  Score=33.37  Aligned_cols=141  Identities=15%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             CeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEecCC------cEEEE-EccC---CCccEE
Q 021121          163 DVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASASVDK------SIKIW-DVRN---YRVPIA  230 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~------~i~v~-d~~~---~~~~~~  230 (317)
                      +.|..+...+.|.+|++.+.  +....+..- +.|..+.++. .|+++++--.+.      .+|+| +.+.   ...++.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            44545577788999999833  445566544 6789999999 899999875432      45665 2221   111222


Q ss_pred             -EEec---------------------CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee---ee--e-----ec
Q 021121          231 -VLNG---------------------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV---GR--Y-----DH  278 (317)
Q Consensus       231 -~~~~---------------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~--~-----~~  278 (317)
                       .+.+                     -..++.+++..|-..+ |+.|+ ++++.+|.+.......   ..  +     ..
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~  184 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH  184 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence             1112                     2346678888886665 44454 6679999876543100   11  1     11


Q ss_pred             cc-ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          279 HT-EFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       279 ~~-~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      |. -....+++.   +.++|..+ +-.+++.++.
T Consensus       185 ~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  185 IDNFKPTQVAIC---EGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             ecCceEEEEEEE---eeEEEEec-CCEEEEEEEe
Confidence            22 235667777   45777765 5567777764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=3.2  Score=37.50  Aligned_cols=199  Identities=12%  Similarity=0.160  Sum_probs=98.6

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT  117 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  117 (317)
                      .|+||++....  +..+. +.|. .+-.+.|+.+.  .|++...+|++.+|++........-.........|..+.+..+
T Consensus        65 ~I~If~~sG~l--L~~~~-w~~~-~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   65 YIRIFNISGQL--LGRIL-WKHG-ELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             eEEEEeccccc--hHHHH-hcCC-CeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence            57788775432  22221 2333 78889999874  6777889999999998643111110112333455666666655


Q ss_pred             CCCEEEEEcCCCEEEEEEcCCCceeEEeec---cccceEEEEEecCCCCeEEEEeCCCe--EEEEeCCCC-CceeeeccC
Q 021121          118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKE---HAYCVYNATWNPRHSDVFCSASGDCT--LRIWDVREM-GSTMIIPAH  191 (317)
Q Consensus       118 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~-~~~~~~~~~  191 (317)
                      |   ++.-..+|.+.+-+-.+....++++.   ...+-.|-...+++......-.-+-.  ..++..... .....+...
T Consensus       139 G---Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~  215 (829)
T KOG2280|consen  139 G---VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP  215 (829)
T ss_pred             c---eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence            4   33333445555443222222333332   11111222222221111111111100  111211111 112222223


Q ss_pred             ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCC
Q 021121          192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHR  248 (317)
Q Consensus       192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~  248 (317)
                      ...+..+..+| +.++|+--...|.|.+-+....+. +..+.  .|. +...++|.-+.
T Consensus       216 ~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~-lce~~~~~~~-~p~qm~Wcgnd  271 (829)
T KOG2280|consen  216 NSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQI-LCEFNCTDHD-PPKQMAWCGND  271 (829)
T ss_pred             CceEEEEEEcC-CcceEEEEecCCcEEEEecchhhh-hhccCCCCCC-chHhceeecCC
Confidence            35678899999 899999999999999988765443 33332  222 23356665443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.68  E-value=2.1  Score=35.31  Aligned_cols=102  Identities=7%  Similarity=0.087  Sum_probs=49.9

Q ss_pred             EEEEEcCC-----CEEEEEEcCCCce---eEEeeccccce--EEEEEecCCCCeEEEEeC-----CCeEEEEeCCCCCc-
Q 021121          121 SFITSSWD-----DTVKLWTVDRPTS---VRTFKEHAYCV--YNATWNPRHSDVFCSASG-----DCTLRIWDVREMGS-  184 (317)
Q Consensus       121 ~l~~~~~d-----g~v~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~-  184 (317)
                      +++.|+.+     ..+..+|+.+.+-   ...+..-..+.  .+++..  ++.+.+.|+.     ...+..||+.+.+= 
T Consensus        75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~  152 (323)
T TIGR03548        75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWF  152 (323)
T ss_pred             EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence            66666654     3577777766543   12221111111  122222  2566667664     24588889876531 


Q ss_pred             -eeeeccCccceEEEEecCCCCcEEEEEecCC----cEEEEEccCCC
Q 021121          185 -TMIIPAHEFEILACDWNKYDDCLIASASVDK----SIKIWDVRNYR  226 (317)
Q Consensus       185 -~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d~~~~~  226 (317)
                       +..+.... .....+..- ++++++.|+.++    .+.+||.++.+
T Consensus       153 ~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       153 ELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             ECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence             11121111 111111222 667888887654    35688887643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.64  E-value=2.6  Score=40.48  Aligned_cols=157  Identities=11%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEE--------ecCCCCeEEEEeCCCeEEE
Q 021121          105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW--------NPRHSDVFCSASGDCTLRI  176 (317)
Q Consensus       105 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~dg~i~i  176 (317)
                      |...-..+-+-|.=+  -+-.+-|+.+.+|+.+++.....+.+....|..+..        .|.-..+|+.++ --.|.+
T Consensus        77 ~~~~~~~mGiFpeI~--RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~i  153 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIG--RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVI  153 (1311)
T ss_pred             Ccceeeeeccchhhc--ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEE
Confidence            333334444555433  133345789999999998777777766666666643        232123333333 334555


Q ss_pred             EeCCC----CCc-----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc--CC---------Cc---------
Q 021121          177 WDVRE----MGS-----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NY---------RV---------  227 (317)
Q Consensus       177 ~d~~~----~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~--~~---------~~---------  227 (317)
                      +-+.-    +..     ..++......|+++.... +|+.+++|- ||  .+|.+.  ..         +.         
T Consensus       154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~  229 (1311)
T KOG1900|consen  154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSS  229 (1311)
T ss_pred             EEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHH
Confidence            43321    111     122233456688888666 888877765 55  444432  10         00         


Q ss_pred             ---cEEEEe-cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          228 ---PIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       228 ---~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                         .+-.+. .+..+|..+....... ++.+-+..|+|.+||+...
T Consensus       230 lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  230 LVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCC
Confidence               011122 4567999999987665 8999999999999999873

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.60  E-value=3.8  Score=38.06  Aligned_cols=150  Identities=12%  Similarity=0.043  Sum_probs=84.0

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccceE-------------EEEEecC-CCCeEEEEeC----------CCeEEE
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY-------------NATWNPR-HSDVFCSASG----------DCTLRI  176 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~i  176 (317)
                      .++.++.|+.+.-.|.++|+.+..+.. .+.+.             .+.-.|- .+..+++|+.          +|.|+-
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            688888999999999999998876642 11110             0111110 0345556642          688999


Q ss_pred             EeCCCCCceeeeccC---------ccc--------e-EEEEecCCCCcEEEEEe------------------cCCcEEEE
Q 021121          177 WDVREMGSTMIIPAH---------EFE--------I-LACDWNKYDDCLIASAS------------------VDKSIKIW  220 (317)
Q Consensus       177 ~d~~~~~~~~~~~~~---------~~~--------v-~~i~~~~~~~~~l~~~~------------------~d~~i~v~  220 (317)
                      +|.++++.+-.+..-         ...        + ...++++ ...++..+.                  ..+.|.-.
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            999999887665311         000        0 2334455 333333322                  12346666


Q ss_pred             EccCCCccEEEEecCC--------CceeEEEecC-CCC--eeEEeeecCCeEEEEecccccce
Q 021121          221 DVRNYRVPIAVLNGHG--------YAVRKVKFSP-HRR--NLLASCSYDMTVCLWDFMVEDAL  272 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~--~~l~~~~~d~~i~vwd~~~~~~~  272 (317)
                      |.++++..-+....|.        ....-+.+.. +++  ..++.++.+|.+.++|.++++.+
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            7777664222222121        0111122222 442  26888999999999999998743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.56  E-value=0.44  Score=35.15  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=26.3

Q ss_pred             cceEEEEEecCC-----CCEEEEEcCCCEEEEEEcCC
Q 021121          107 REVHSADYNPTR-----RDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus       107 ~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ..+..++|+|.|     +.+|++.+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            488999999954     34788999999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.27  E-value=2.3  Score=34.11  Aligned_cols=116  Identities=11%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe------CCCeEEEEeCCCCCceeeecc-----CccceEE
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS------GDCTLRIWDVREMGSTMIIPA-----HEFEILA  197 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~  197 (317)
                      ..|++||..+.+-..--..-.+.|+.+.|..+ .++++.|.      ....+..||+.+..- ..+..     ...++..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence            46999998876544444456788999999855 66776664      456788899876532 22222     2367788


Q ss_pred             EEecCCCCc-EEEEEe-cC--CcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121          198 CDWNKYDDC-LIASAS-VD--KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP  246 (317)
Q Consensus       198 i~~~~~~~~-~l~~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~  246 (317)
                      +.+...+.. +.+.|. .+  ..|..||=.+....-.........|..+.+-|
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            877543443 444443 22  34677765443321111122234555555443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.27  E-value=0.29  Score=41.09  Aligned_cols=166  Identities=14%  Similarity=0.064  Sum_probs=95.8

Q ss_pred             CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee-EEeecc-c----cceE-EEEEecCCCCeEEEEe
Q 021121           97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-RTFKEH-A----YCVY-NATWNPRHSDVFCSAS  169 (317)
Q Consensus        97 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~-~----~~v~-~~~~~~~~~~~l~~~~  169 (317)
                      +.+..+..-.+.+..+-..|+++ .+..-+. .++.++++.+.... +++... .    ..|+ .+.... ++.-+.++.
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~  287 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVH  287 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEc
Confidence            33344555567788888999998 5555544 68888888764321 111110 1    1122 111112 366677888


Q ss_pred             CCCeEEEE-eCCCCCc-----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE
Q 021121          170 GDCTLRIW-DVREMGS-----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK  243 (317)
Q Consensus       170 ~dg~i~i~-d~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~  243 (317)
                      .||.|.-| |.+....     ++.++-...++..+.-.. +.+-+++-...|++.++.....+. +.... --..+.-++
T Consensus       288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~-lL~~~-~~~~~~~~~  364 (733)
T COG4590         288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKL-LLFER-AYQAPQLVA  364 (733)
T ss_pred             CCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcc-eehhh-hhcCcceee
Confidence            99988776 5554322     112222223343333333 556677778888888887655442 22222 223567799


Q ss_pred             ecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          244 FSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      +||.+.+ +++- ..|.++++.+++..
T Consensus       365 ~Sp~~~~-Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         365 MSPNQAY-LLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             eCcccch-heee-cCCceEEEEecCCC
Confidence            9999985 5543 46789999887754

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.17  E-value=3.1  Score=35.20  Aligned_cols=10  Identities=10%  Similarity=0.076  Sum_probs=7.5

Q ss_pred             eEEEEeCCCC
Q 021121          173 TLRIWDVREM  182 (317)
Q Consensus       173 ~i~i~d~~~~  182 (317)
                      .+.+||..+.
T Consensus       190 ~v~~YD~~t~  199 (376)
T PRK14131        190 EVLSYDPSTN  199 (376)
T ss_pred             eEEEEECCCC
Confidence            5888898764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.00  E-value=0.36  Score=25.22  Aligned_cols=30  Identities=7%  Similarity=0.082  Sum_probs=22.2

Q ss_pred             CCCceeEEEecCCCCeeEEeeecC--CeEEEE
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYD--MTVCLW  264 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vw  264 (317)
                      ....-....|+|+|+.++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445667889999999877777777  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.93  E-value=0.78  Score=35.31  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             CCceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCccee-----eeee------cCCCCeeEEEec
Q 021121            1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTE-----LVAF------DTADGVYDLAWS   69 (317)
Q Consensus         1 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~-----~~~~------~~~~~v~~~~~~   69 (317)
                      ||.+.-+.++..+..+.   ..+++.+.       +|.+++||+......+..     +...      .....|..+..+
T Consensus         6 ~P~i~Lgs~~~~l~~~~---~~Ll~iT~-------~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt   75 (219)
T PF07569_consen    6 LPPIVLGSPVSFLECNG---SYLLAITS-------SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT   75 (219)
T ss_pred             cCcEecCCceEEEEeCC---CEEEEEeC-------CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc
Confidence            57777777777666443   44555554       899999999876533322     1100      244568888888


Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCC
Q 021121           70 ESHDSLLIAAVADGSVKIYDTAL   92 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~   92 (317)
                      .+|. -+++- .+|....|+.+-
T Consensus        76 ~~G~-PiV~l-sng~~y~y~~~L   96 (219)
T PF07569_consen   76 SNGV-PIVTL-SNGDSYSYSPDL   96 (219)
T ss_pred             CCCC-EEEEE-eCCCEEEecccc
Confidence            7773 44443 457788888553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=1.1  Score=38.46  Aligned_cols=75  Identities=13%  Similarity=0.025  Sum_probs=48.5

Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEe---------ccccccee-eee---------ecccceeEeEEEEecc--CCeE
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWD---------FMVEDALV-GRY---------DHHTEFAVGVDMSVLV--EGLL  296 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd---------~~~~~~~~-~~~---------~~~~~~v~~~~~~~~~--~~~l  296 (317)
                      .|..+..++.|. .++-.+.+|.+.++=         ++.++..+ .+.         ....-.+..++|+|+.  +..|
T Consensus       105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            567888899998 566667788655532         11222111 110         1122346788999985  5678


Q ss_pred             EEeecCCcEEEEecCCC
Q 021121          297 ASTGWDELVYVWQQGMD  313 (317)
Q Consensus       297 ~s~~~dg~i~~w~~~~~  313 (317)
                      ..-..|..+|+|++...
T Consensus       184 ~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEecCcEEEEEecCCc
Confidence            88888999999999765

>PRK13684 Ycf48-like protein; Provisional

Probab=93.70  E-value=3.5  Score=34.20  Aligned_cols=150  Identities=8%  Similarity=-0.001  Sum_probs=82.1

Q ss_pred             CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc
Q 021121          106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS  184 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (317)
                      ...+.++.+.|++. ++++ +..|.+..-.-..++.-... ......++++.+.++ +..+++ +..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~-~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~-g~~~~v-g~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGK-YVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPD-GNLWML-ARGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCe-EEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCC-CCEEEE-ecCCEEEEccCCCCCc
Confidence            45788999999875 5544 44666553211222222222 233467899999987 666655 4567665423333332


Q ss_pred             eeeecc----CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe---cCCCceeEEEecCCCCeeEEeeec
Q 021121          185 TMIIPA----HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN---GHGYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       185 ~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                      -.....    ....+..+.+.| ++..++++ .+|.+. .....++. -....   .-....+.+.|..+++ .++ .+.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~-~~~-~G~  321 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEK-GFV-LGQ  321 (334)
T ss_pred             cccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCCc-eEE-ECC
Confidence            221111    223477888988 66665554 566554 33333332 22221   1223577888877666 455 456


Q ss_pred             CCeEEEEe
Q 021121          258 DMTVCLWD  265 (317)
Q Consensus       258 d~~i~vwd  265 (317)
                      .|.|--|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            78877665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.69  E-value=0.59  Score=35.95  Aligned_cols=66  Identities=6%  Similarity=0.134  Sum_probs=45.8

Q ss_pred             ecCCCCeeEEeeecCCeEEEEecccccceeee------ee-------cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          244 FSPHRRNLLASCSYDMTVCLWDFMVEDALVGR------YD-------HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +...+. +|++-..+|.+++||+.+.+.....      +.       .....|..+.++.+ |.-+++-+ +|..+.|+.
T Consensus        18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-GVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-CCEEEEEe-CCCEEEecc
Confidence            334566 5888889999999999987733222      22       34567888888866 66666654 577888887


Q ss_pred             CC
Q 021121          311 GM  312 (317)
Q Consensus       311 ~~  312 (317)
                      +.
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            64

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.56  E-value=3.1  Score=33.18  Aligned_cols=161  Identities=17%  Similarity=0.122  Sum_probs=101.4

Q ss_pred             eeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           54 LVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        54 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      +......+-+..+.++.+   +...+..+.-++|.|+.++.....+..+.. .+--.++..+  |+ +...+..|.-+.+
T Consensus        80 ~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vs--Gn-~aYVadlddgfLi  152 (370)
T COG5276          80 LSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVS--GN-YAYVADLDDGFLI  152 (370)
T ss_pred             EEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEec--CC-EEEEeeccCcEEE
Confidence            333455666788888853   555566666699999998865555555443 2444455444  55 7777776666777


Q ss_pred             EEcCCCc---eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEE
Q 021121          134 WTVDRPT---SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLI  208 (317)
Q Consensus       134 wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l  208 (317)
                      .|+.+.+   ....+......-..++.+   +++...+..|+-+.+-|+.+......+.  .....+.++..++ +..++
T Consensus       153 vdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~  228 (370)
T COG5276         153 VDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYL  228 (370)
T ss_pred             EECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEE
Confidence            8887653   333444444445677776   6778788899999999998764433322  1223577787776 55455


Q ss_pred             EEEecCCcEEEEEccCCCc
Q 021121          209 ASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~  227 (317)
                      +..  +--+.+-|....+.
T Consensus       229 vvy--~egvlivd~s~~ss  245 (370)
T COG5276         229 VVY--DEGVLIVDVSGPSS  245 (370)
T ss_pred             EEc--ccceEEEecCCCCC
Confidence            443  33467777776654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.41  E-value=0.46  Score=25.16  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=27.6

Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEE
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW  157 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (317)
                      |+++.++++...++.|.++|..+++.+..+... .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            456645555667899999999988887777652 33444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.29  E-value=1.2  Score=32.87  Aligned_cols=32  Identities=13%  Similarity=0.470  Sum_probs=25.7

Q ss_pred             cceEEEEecCC-----CCcEEEEEecCCcEEEEEccC
Q 021121          193 FEILACDWNKY-----DDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       193 ~~v~~i~~~~~-----~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      ..+.+++|||.     .+.+|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            37899999993     245888899999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.00  E-value=4.7  Score=33.60  Aligned_cols=41  Identities=10%  Similarity=-0.163  Sum_probs=19.3

Q ss_pred             CeEEEEeCCCCC--ceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121          172 CTLRIWDVREMG--STMIIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       172 g~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      ..+..||..+.+  .+..+......-.+++..  ++++++.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHK--GNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEE--CCEEEEEeeee
Confidence            468888887642  111121101111222222  66777777753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=4.8  Score=38.71  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           55 VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      ...+.+.....++|.|.- .+++.|..+|.|++|-..
T Consensus        30 ~~~G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   30 NRHGFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             eecCCCCCCcceeecccc-ceEEEEEecccEEEeccc
Confidence            334555567788999985 799999999999999754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.73  E-value=0.94  Score=40.46  Aligned_cols=73  Identities=16%  Similarity=0.278  Sum_probs=43.1

Q ss_pred             CCeEEEEEcCCeEEEEEeCCCC-CCCCce-----------ee-----------ccCCcceEEEEEec---CCCCEEEEEc
Q 021121           73 DSLLIAAVADGSVKIYDTALPP-TANPIR-----------SL-----------HEHTREVHSADYNP---TRRDSFITSS  126 (317)
Q Consensus        73 ~~~l~~~~~dg~i~v~~~~~~~-~~~~~~-----------~~-----------~~~~~~v~~~~~~~---~~~~~l~~~~  126 (317)
                      +..++.+..||.+......... ......           .+           ......+..++...   ++..++++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            3578888899998888876511 000000           00           01123445555555   2344999999


Q ss_pred             CCCEEEEEEcCCCceeEEe
Q 021121          127 WDDTVKLWTVDRPTSVRTF  145 (317)
Q Consensus       127 ~dg~v~iwd~~~~~~~~~~  145 (317)
                      .|+.+++||+.+++++...
T Consensus       238 ~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEe
Confidence            9999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.55  E-value=9.7  Score=36.10  Aligned_cols=173  Identities=6%  Similarity=0.058  Sum_probs=93.2

Q ss_pred             EEEEEEcCCCceeEEeecc----ccceEEEEEecCCCC-eEEEEe-----------CCCeEEEEeCCC-CCceeeecc--
Q 021121          130 TVKLWTVDRPTSVRTFKEH----AYCVYNATWNPRHSD-VFCSAS-----------GDCTLRIWDVRE-MGSTMIIPA--  190 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~-~~~~~~~~~--  190 (317)
                      .|++.|..+++.+..+...    ...+..+.|+..+.. +++++.           .+|.++.|++-. ++.+..+..  
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            5888888887766555422    224566667665333 333332           234566676543 332222221  


Q ss_pred             CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE--EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          191 HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV--LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      -..++  .+..|..+ ++++| ....+++||+.+.+. ++.  ++.-...|+.+++.  +. .++.|...-.+.++-.+.
T Consensus       934 ~~~~v--~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~l-LRk~e~k~~p~~Is~iqt~--~~-RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  934 IPGPV--GAICPFQG-RVLAG-VGRFLRLYDLGKKKL-LRKCELKFIPNRISSIQTY--GA-RIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             CCccc--eEEeccCC-EEEEe-cccEEEEeeCChHHH-HhhhhhccCceEEEEEeec--ce-EEEEeeccceEEEEEEec
Confidence            22334  34556344 44443 457899999987543 322  22234567777774  33 366666555566655544


Q ss_pred             ccceeeeeec--ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          269 EDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       269 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ....+..+..  -...|+++.+-.  ...++.+..=|.+.+-++..
T Consensus      1006 ~~n~l~~fadD~~pR~Vt~~~~lD--~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 EDNQLIVFADDPVPRHVTALELLD--YDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCCeEEEEeCCCccceeeEEEEec--CCceeeccccCcEEEEECCC
Confidence            3333333322  233466665543  56788777777776666543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.36  E-value=5.5  Score=32.83  Aligned_cols=104  Identities=9%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             CCeEEEEeCC-----CeEEEEeCCCCCc---eeeeccCccce--EEEEecCCCCcEEEEEecC-----CcEEEEEccCCC
Q 021121          162 SDVFCSASGD-----CTLRIWDVREMGS---TMIIPAHEFEI--LACDWNKYDDCLIASASVD-----KSIKIWDVRNYR  226 (317)
Q Consensus       162 ~~~l~~~~~d-----g~i~i~d~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~  226 (317)
                      +.+++.|+.+     ..+..||+.+.+-   ...+.....+.  .+++..  ++.+++.|+..     ..+..||+.+.+
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            5666777654     3567777766542   11221111111  122222  56777777642     358888887643


Q ss_pred             ccEEEEec--CCCceeEEEecCCCCeeEEeeecCC----eEEEEeccccc
Q 021121          227 VPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDM----TVCLWDFMVED  270 (317)
Q Consensus       227 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~----~i~vwd~~~~~  270 (317)
                        -..+..  ........+...+++ +.+.|+.++    .+.+||..+.+
T Consensus       151 --W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 --WFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             --eeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCe
Confidence              222211  111111122223454 677777653    25678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.36  E-value=1.1  Score=37.83  Aligned_cols=166  Identities=14%  Similarity=0.128  Sum_probs=91.5

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC---CCee-EEEecCCCCCeEEEEEcCCe
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA---DGVY-DLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .+..+-..|  +++.+..-.       ...+.++++.+..-..+++......   ..|+ .+..- .|..-++++..||.
T Consensus       222 ~v~qllL~P--dg~~LYv~~-------g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~  291 (733)
T COG4590         222 DVSQLLLTP--DGKTLYVRT-------GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL  291 (733)
T ss_pred             chHhhEECC--CCCEEEEec-------CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc
Confidence            455566777  455555443       3488899988765333322211111   1222 11111 24467888889999


Q ss_pred             EEEE-EeCCCCCC--CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           85 VKIY-DTALPPTA--NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        85 i~v~-~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      |.-| |...+...  ..++.++-...++..+.-..+.+ -+++-+..|++..+.-...+.+..-. --..+.-++++|. 
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~-  368 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN-  368 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc-
Confidence            9887 44433221  11222222233444333222233 67788888998887654443332222 2235777899998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMII  188 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (317)
                      .+.+++ -+.|.++++.+++..+..++
T Consensus       369 ~~~Ll~-e~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         369 QAYLLS-EDQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             cchhee-ecCCceEEEEecCCCCCccH
Confidence            666644 45788999998876554443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.90  E-value=5.3  Score=31.64  Aligned_cols=201  Identities=12%  Similarity=0.071  Sum_probs=115.8

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ....-..++-.||| ..-+++...+.|--.|-.++   +....--+....-..|..-||+. .-++-+.. .|.-.|.++
T Consensus        60 ~G~ap~dvapapdG-~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt  133 (353)
T COG4257          60 NGSAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKT  133 (353)
T ss_pred             CCCCccccccCCCC-ceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcc
Confidence            33455677888887 47777777777777776655   33322223344555667778877 33332222 555556655


Q ss_pred             CceeE---EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCCCcEEEEEecC
Q 021121          139 PTSVR---TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       139 ~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      .+..+   ..+..........|.+. +++-+++.. |.---.|..+ ..+..+.. .....+.|+..| ++...++.-.+
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD~~-G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslag  209 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFDPW-GNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAG  209 (353)
T ss_pred             cceEEeecccccCCCcccceeeCCC-ccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccc
Confidence            43322   11223456788889988 777777653 2211122221 12222322 233457788889 88888887778


Q ss_pred             CcEEEEEccCCCccEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          215 KSIKIWDVRNYRVPIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ..|-..|.......+... ......-+.+--+|.++ +-++-...+.+..+|.....
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccccc
Confidence            888888877653211111 12123445666677777 56666667778888866544

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=91.48  E-value=9.3  Score=33.63  Aligned_cols=274  Identities=9%  Similarity=-0.059  Sum_probs=126.0

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ...+|.++-+.-  .+.+-+++.       + -+..||....+  ...+.......+|..+.-..++  .|.+|+.+| |
T Consensus       163 ~d~~V~aLv~D~--~g~lWvgT~-------d-GL~~fd~~~gk--alql~s~~~dk~I~al~~d~qg--~LWVGTdqG-v  227 (671)
T COG3292         163 KDTPVVALVFDA--NGRLWVGTP-------D-GLSYFDAGRGK--ALQLASPPLDKAINALIADVQG--RLWVGTDQG-V  227 (671)
T ss_pred             cCccceeeeeec--cCcEEEecC-------C-cceEEccccce--EEEcCCCcchhhHHHHHHHhcC--cEEEEeccc-e
Confidence            345677787877  677777765       3 34555554433  1111111233567777766665  688898888 6


Q ss_pred             EEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec--cccceEEEEEecCCC
Q 021121           86 KIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYCVYNATWNPRHS  162 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~  162 (317)
                      .+.+.+..   ....- ..-..+.|..+.-..+|  .+-.|+..|..+.--.+.+-.....+.  .-+.|.++....+ +
T Consensus       228 ~~~e~~G~---~~sn~~~~lp~~~I~ll~qD~qG--~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-G  301 (671)
T COG3292         228 YLQEAEGW---RASNWGPMLPSGNILLLVQDAQG--ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-G  301 (671)
T ss_pred             EEEchhhc---cccccCCCCcchheeeeecccCC--CEEEeecccceeEecCCCCccccccccCCccccccceeeccC-C
Confidence            77665431   11110 11123444444433344  466666666544322222211111111  2234555555544 4


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccc-eEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFE-ILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR  240 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~  240 (317)
                      + +-+++.+|.+++-+-. -.....+...++. +..++..|. .+..+--...-|.+.+-+-.++.............|+
T Consensus       302 s-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit  379 (671)
T COG3292         302 S-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNIT  379 (671)
T ss_pred             C-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccc
Confidence            4 4467777766654432 1111111111111 111111110 0111111111122222222232221222223345677


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-cccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVY  306 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  306 (317)
                      .+++..+++  +-.|+..+-+..|+..+......... ...+.|..|.=.|+ ++ |..|+.+|.++
T Consensus       380 ~~~~d~~g~--lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~d-ns-LWIGTs~Glvk  442 (671)
T COG3292         380 TTLEDSRGR--LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPD-NS-LWIGTSGGLVK  442 (671)
T ss_pred             hhhhccCCc--EEEEecccchhhhccCCcccccccccCCcccceeeeeecCC-CC-EEEeccCCeEe
Confidence            777777665  55566664566677666222222222 23456777777776 34 88888888654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.41  E-value=6.4  Score=31.63  Aligned_cols=116  Identities=10%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEEeec-----ccc
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRTFKE-----HAY  150 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~-----~~~  150 (317)
                      -..|++||.... ++...  ..+-.+.|+.+.|..+.. ++++|.      ....+..||+.+..- ..+..     -.+
T Consensus        15 C~~lC~yd~~~~-qW~~~--g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipg   89 (281)
T PF12768_consen   15 CPGLCLYDTDNS-QWSSP--GNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPG   89 (281)
T ss_pred             CCEEEEEECCCC-EeecC--CCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCC
Confidence            346999998754 22211  123567899999985554 666663      456788999886543 23332     247


Q ss_pred             ceEEEEEecCCCC-eEEEEe-C--CCeEEEEeCCCCCceee-eccCccceEEEEecC
Q 021121          151 CVYNATWNPRHSD-VFCSAS-G--DCTLRIWDVREMGSTMI-IPAHEFEILACDWNK  202 (317)
Q Consensus       151 ~v~~~~~~~~~~~-~l~~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~  202 (317)
                      ++..+.+...+.. +.+.|. .  +..|..||-.+-..+.. .......|..+.+-|
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            7888887654444 443433 2  33466676544333322 122234455554443

>PLN02153 epithiospecifier protein

Probab=91.27  E-value=7.7  Score=32.28  Aligned_cols=62  Identities=6%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CCeEEEEeCC-----CeEEEEeCCCCCc--eeeec----cCccceEEEEecCCCCcEEEEEecC-----------CcEEE
Q 021121          162 SDVFCSASGD-----CTLRIWDVREMGS--TMIIP----AHEFEILACDWNKYDDCLIASASVD-----------KSIKI  219 (317)
Q Consensus       162 ~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d-----------~~i~v  219 (317)
                      +.+++.|+.+     ..+.+||+++.+=  +..+.    .....-.+++..  ++++++.|+.+           ..+.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence            5677777653     3477888876421  11110    011111223332  56677777754           24778


Q ss_pred             EEccCC
Q 021121          220 WDVRNY  225 (317)
Q Consensus       220 ~d~~~~  225 (317)
                      ||.++.
T Consensus       164 yd~~~~  169 (341)
T PLN02153        164 YNIADG  169 (341)
T ss_pred             EECCCC
Confidence            888764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.15  E-value=1.1  Score=23.66  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCCceeeecc
Q 021121          159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (317)
                      |++..++++...++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            45344555566788999999988877776664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.12  E-value=8.8  Score=32.69  Aligned_cols=146  Identities=10%  Similarity=0.025  Sum_probs=76.7

Q ss_pred             eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc--
Q 021121          152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--  227 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--  227 (317)
                      ...+..+++ +.+++.+.....++-||-  +..  ...-......+.++.+.+ ++.+++++ .+|.+.. ....++.  
T Consensus       241 f~~v~~~~d-G~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPD-GDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCC-CCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCccc
Confidence            344455566 556555443333333442  221  111122345688899988 77777665 4565543 3222221  


Q ss_pred             --cEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee--eecccceeEeEEEEeccCCeEEEeec
Q 021121          228 --PIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR--YDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       228 --~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                        .......  ....+..+.|.+++. ++ .++..|.+.... ..++.-...  ...-....+.+.|.++  +.....+.
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~--~~g~~~G~  389 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD--KKGFVLGN  389 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC--CceEEEeC
Confidence              1222221  223588999998876 44 455678666543 333321111  1233456889998774  34555557


Q ss_pred             CCcEEEE
Q 021121          302 DELVYVW  308 (317)
Q Consensus       302 dg~i~~w  308 (317)
                      +|.|.-|
T Consensus       390 ~G~il~~  396 (398)
T PLN00033        390 DGVLLRY  396 (398)
T ss_pred             CcEEEEe
Confidence            8877655

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.77  E-value=11  Score=32.98  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=50.9

Q ss_pred             ceEEEEEecCCCCEEEEEcCCCEEEEEEc---------CCCceeEEee-----------ccccceEEEEEecCC--CCeE
Q 021121          108 EVHSADYNPTRRDSFITSSWDDTVKLWTV---------DRPTSVRTFK-----------EHAYCVYNATWNPRH--SDVF  165 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~l  165 (317)
                      .|..+..++.|. .++-.+.+|.+.++-.         +.++..-..+           ...-.+...+|+|+.  ...+
T Consensus       105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            567788899998 6777777887766542         2232211111           112246678899985  5677


Q ss_pred             EEEeCCCeEEEEeCCCCCce
Q 021121          166 CSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~  185 (317)
                      ..-+.|..+++||+.....+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            78889999999999865544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.53  E-value=4.4  Score=28.19  Aligned_cols=117  Identities=14%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             EEecCCCCeEEEEEecccccccCceEEEEecCCCCC----cceeeeeecCCCCeeEEEecC----CCCCeEEEEEcCCeE
Q 021121           14 KFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP----ALTELVAFDTADGVYDLAWSE----SHDSLLIAAVADGSV   85 (317)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i   85 (317)
                      .|....+ .|++++.       .|+|.|++......    ....+..+.....|++++-.+    ++...|+.|+. ..+
T Consensus         5 kfDG~~p-cL~~aT~-------~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~l   75 (136)
T PF14781_consen    5 KFDGVHP-CLACATT-------GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSL   75 (136)
T ss_pred             EeCCCce-eEEEEec-------CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceE
Confidence            4555423 4455554       77999998764432    223455566778888887544    23346777765 569


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCC--CCEEEEEcCCCEEEEEEcCCCceeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTR--RDSFITSSWDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~  143 (317)
                      ..||+...   ..+. ++.-...|.++.+-.-+  ..-++..+.+..|.-||.+..+...
T Consensus        76 laYDV~~N---~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   76 LAYDVENN---SDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             EEEEcccC---chhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence            99999865   2221 22334667777663211  1134444446788888876554443

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=90.15  E-value=14  Score=33.49  Aligned_cols=202  Identities=12%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             cCCCCeeEEEecCCC--CCeEEEEEcC-CeEEEEEeCCC----------CCCCCceeeccCCcceEEEEEecCCCCEEEE
Q 021121           58 DTADGVYDLAWSESH--DSLLIAAVAD-GSVKIYDTALP----------PTANPIRSLHEHTREVHSADYNPTRRDSFIT  124 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~--~~~l~~~~~d-g~i~v~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  124 (317)
                      ....-|.||......  ..+.++|-.+ +.-++-.+..+          ........+. -.+.|..+.|.+++. .+++
T Consensus        69 ~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~-~I~v  146 (670)
T PF10395_consen   69 SPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGK-IIYV  146 (670)
T ss_pred             CcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEE-cccceEEEEEecCCC-EEEE
Confidence            345567777764321  2355555344 33454444432          0011111222 367899999998887 8889


Q ss_pred             EcCCCEEEEEEcCCCceeE--Eeec-cc------cceEEEEEecCCCCeEEEEeC-C---CeEEEEeCC-CCCceeeec-
Q 021121          125 SSWDDTVKLWTVDRPTSVR--TFKE-HA------YCVYNATWNPRHSDVFCSASG-D---CTLRIWDVR-EMGSTMIIP-  189 (317)
Q Consensus       125 ~~~dg~v~iwd~~~~~~~~--~~~~-~~------~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~-~~~~~~~~~-  189 (317)
                      ...+|.|.+||...+....  .+.. +.      .-|..... .++..++++.+. +   -..+++.+. .......+. 
T Consensus       147 vl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~-~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s  225 (670)
T PF10395_consen  147 VLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFEL-ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSS  225 (670)
T ss_pred             EEcCCcEEEEeccccccccccccccccccceehhhhhccccc-ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeeh
Confidence            9999999999993332111  1211 11      11222211 112344444433 2   246777771 112222221 


Q ss_pred             --cCccce--EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-----CC-CceeEEEecCCCCeeEEeeecCC
Q 021121          190 --AHEFEI--LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-----HG-YAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       190 --~~~~~v--~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~-~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                        .+....  ..+++.  .|.+..-  .+++|.+|++...+. ...+.-     .. ..+.++.- |...++|++  .++
T Consensus       226 ~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~-~~tI~l~~ii~~~~~~~vSl~~-~s~nRvLLs--~~n  297 (670)
T PF10395_consen  226 TILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQI-QKTISLPSIIDKESDDLVSLKP-PSPNRVLLS--VNN  297 (670)
T ss_pred             heeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceE-EEEEEechhhccccccceEeec-CCCCeEEEE--cCC
Confidence              111111  223333  5555444  577899999987642 222221     11 12333332 222225554  367


Q ss_pred             eEEEEeccccc
Q 021121          260 TVCLWDFMVED  270 (317)
Q Consensus       260 ~i~vwd~~~~~  270 (317)
                      .|.+.|+.-..
T Consensus       298 kIyLld~~~~s  308 (670)
T PF10395_consen  298 KIYLLDLKFES  308 (670)
T ss_pred             EEEEEeehhhh
Confidence            89999986543

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.00  E-value=9  Score=30.95  Aligned_cols=222  Identities=10%  Similarity=0.094  Sum_probs=118.2

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC---CCCC-ceeecc-----CCcceEEEEEecCCC-----------CEE
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPP---TANP-IRSLHE-----HTREVHSADYNPTRR-----------DSF  122 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~---~~~~-~~~~~~-----~~~~v~~~~~~~~~~-----------~~l  122 (317)
                      -..|+++|.+ .+-++....+...+||.....   ...+ ...+..     .....+.+.|+....           ..+
T Consensus        25 ~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4679999987 466677777899999986221   1111 222221     234567777764322           236


Q ss_pred             EEEcCCCEEEEEEcCCCce-----eEEeec-cccce-EEEEEe--cCCCCeEEEEeCCCeEEEEeCCCCCcee--eeccC
Q 021121          123 ITSSWDDTVKLWTVDRPTS-----VRTFKE-HAYCV-YNATWN--PRHSDVFCSASGDCTLRIWDVREMGSTM--IIPAH  191 (317)
Q Consensus       123 ~~~~~dg~v~iwd~~~~~~-----~~~~~~-~~~~v-~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~  191 (317)
                      +.+++||+|.-|...-+..     ...+.. ....| ..+++.  ..+..+.++--..++|.+||-.-.+...  .+...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7788999999998543222     112221 12223 234443  3223344445568899999854322111  01100


Q ss_pred             -----ccc-----------eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecC------C
Q 021121          192 -----EFE-----------ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSP------H  247 (317)
Q Consensus       192 -----~~~-----------v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~------~  247 (317)
                           -.+           |+-..-.+ +.+.=+.|..-|.|-+||... + .++.+.  +.-..-+.|+..|      .
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~G-~-l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLNG-Q-LLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCCC-c-EEEEeccCCcccCCceeeeChhhhCCCC
Confidence                 000           11111122 222222334456899999875 3 244442  2223456777765      3


Q ss_pred             CCeeEEeeecCCeEEEEecccccceeeeeeccc------ceeEeEEEEe
Q 021121          248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT------EFAVGVDMSV  290 (317)
Q Consensus       248 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------~~v~~~~~~~  290 (317)
                      +. +|+---.||+|..||..+++ .+..+....      ..++.+.|-.
T Consensus       261 g~-lLVGNFGDG~InaFD~~sG~-~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       261 GA-LLVGNFGDGTINAYDPQSGA-QLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CC-eEEeecCCceeEEecCCCCc-eeeeecCCCCCeEEecCeEEeeeCC
Confidence            44 67766679999999998876 223333222      2356777765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.74  E-value=17  Score=35.15  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             cCCCCeeEEeeecCCeEEEEeccccc
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ++++. .++++-.||.+..||...+.
T Consensus       243 ~~~~~-~~v~~h~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  243 SRDGS-HFVSYHTDGSYAFWDVSSGK  267 (993)
T ss_pred             ccCCc-eEEEEEecCCEEeeecCCCc
Confidence            77777 68999999999999988753

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.70  E-value=1.5  Score=22.81  Aligned_cols=30  Identities=13%  Similarity=0.341  Sum_probs=20.9

Q ss_pred             CCcceEEEEEecCCCCEEEEEcCC--CEEEEE
Q 021121          105 HTREVHSADYNPTRRDSFITSSWD--DTVKLW  134 (317)
Q Consensus       105 ~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iw  134 (317)
                      ....-....|+|||+.++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            455677889999999666777666  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences

Probab=89.67  E-value=2.3  Score=29.81  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=33.1

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES   71 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   71 (317)
                      +....+.---|.++  ..++...+.     ||+.|+.|.+....+.+..+..+........++|-|.
T Consensus         8 D~s~g~L~P~yD~d--t~llyl~gK-----GD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK   67 (136)
T PF08954_consen    8 DTSSGVLMPFYDED--TNLLYLAGK-----GDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK   67 (136)
T ss_dssp             ---SS-EEEEE-TT--T-EEEEEET-----T-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred             cCCCceeEeeEcCC--CCEEEEEec-----cCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence            34455555667774  444444443     3999999999988877888888888888999999884

It has no known function []. ; PDB: 2B4E_A 2AQ5_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.13  E-value=11  Score=30.56  Aligned_cols=226  Identities=12%  Similarity=0.109  Sum_probs=120.4

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC---cceeeeeec------CCCCeeEEEecCCC--------
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP---ALTELVAFD------TADGVYDLAWSESH--------   72 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~---~~~~~~~~~------~~~~v~~~~~~~~~--------   72 (317)
                      ...|+|+|  .+.+-++...      .+...+||.+....   ....+....      .....+.+.|+...        
T Consensus        25 ~WGia~~p--~~~~WVadng------T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g   96 (336)
T TIGR03118        25 AWGLSYRP--GGPFWVANTG------TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG   96 (336)
T ss_pred             cceeEecC--CCCEEEecCC------cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence            45789999  5666666654      88999999973211   111112211      23457777777432        


Q ss_pred             ---CCeEEEEEcCCeEEEEEeCCCCCC--CCceeec-cCCcceE-EEEEecC--CCCEEEEEcCCCEEEEEEcCCCcee-
Q 021121           73 ---DSLLIAAVADGSVKIYDTALPPTA--NPIRSLH-EHTREVH-SADYNPT--RRDSFITSSWDDTVKLWTVDRPTSV-  142 (317)
Q Consensus        73 ---~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~-~~~~~v~-~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~-  142 (317)
                         ...++.+++||+|.-|........  .....+. .....|+ .+++...  +..+.++--..++|.++|-.=.+.. 
T Consensus        97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~  176 (336)
T TIGR03118        97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL  176 (336)
T ss_pred             cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence               224677889999999996543220  1112222 1123343 4555433  3423444456789999985422111 


Q ss_pred             -EEeecc-----cc-----------ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecC-
Q 021121          143 -RTFKEH-----AY-----------CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNK-  202 (317)
Q Consensus       143 -~~~~~~-----~~-----------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~-  202 (317)
                       ..+...     -.           -|+-..-.++ .+-=+.+..-|.|-+||+. +..++.+.  +.-.....|+..| 
T Consensus       177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCc-ccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChh
Confidence             001100     00           0111111122 1122234445789999975 56666663  1222345565544 


Q ss_pred             ----CCCcEEEEEecCCcEEEEEccCCCccEEEEecCC------CceeEEEecC
Q 021121          203 ----YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG------YAVRKVKFSP  246 (317)
Q Consensus       203 ----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~~v~~~~~~~  246 (317)
                          ..+.+|+---.||+|..||..+++. +-.+....      ...+.|.|-.
T Consensus       255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~-~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGTINAYDPQSGAQ-LGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhCCCCCCeEEeecCCceeEEecCCCCce-eeeecCCCCCeEEecCeEEeeeCC
Confidence                2577788777899999999987764 33333221      2456777754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.04  E-value=20  Score=33.64  Aligned_cols=67  Identities=16%  Similarity=0.045  Sum_probs=47.3

Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee----c-----------c----CccceEEEEecCCCCcEEEE
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----P-----------A----HEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-----------~----~~~~v~~i~~~~~~~~~l~~  210 (317)
                      ..|.++..... +..++....||+|.++|-.+.+.+...    .           +    ...++..++||| +...++.
T Consensus       260 ~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~  337 (753)
T PF11635_consen  260 KRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ  337 (753)
T ss_pred             CeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence            45777776666 678889999999999998877544333    1           0    011234578999 8888888


Q ss_pred             EecCCcEE
Q 021121          211 ASVDKSIK  218 (317)
Q Consensus       211 ~~~d~~i~  218 (317)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=88.83  E-value=17  Score=32.41  Aligned_cols=177  Identities=14%  Similarity=0.161  Sum_probs=99.6

Q ss_pred             CEEEEEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121          129 DTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      +.|.+.| ++.+.+..+.  +....|.++.|.-+ .-+++|=-.--=+.+.|+.+.+..+.+-..+-+=.+=-.+|.+.+
T Consensus       304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd-~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~  381 (521)
T PF09826_consen  304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGD-RAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDEN  381 (521)
T ss_pred             EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCC-eEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCC
Confidence            4566776 5555555554  34568999999976 666666555456889999887655443222222223334554544


Q ss_pred             EEEEEecC------------CcEEEEEccCCCccEEEEe---cCC-------CceeEEEecCCCCeeEEeeec-------
Q 021121          207 LIASASVD------------KSIKIWDVRNYRVPIAVLN---GHG-------YAVRKVKFSPHRRNLLASCSY-------  257 (317)
Q Consensus       207 ~l~~~~~d------------~~i~v~d~~~~~~~~~~~~---~~~-------~~v~~~~~~~~~~~~l~~~~~-------  257 (317)
                      +|+.-+.+            =+|.+||+.....|.....   +..       ..-.++.|++... +|+---.       
T Consensus       382 ~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~-ll~~Pv~~~~~~~~  460 (521)
T PF09826_consen  382 HLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKN-LLAFPVSSSYGYFN  460 (521)
T ss_pred             eEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCC-EEEEEEEEccCccc
Confidence            44443322            2478999988765443321   100       1234678888776 4433222       


Q ss_pred             CCeEEEEeccccc--ceeeeeecccc------eeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          258 DMTVCLWDFMVED--ALVGRYDHHTE------FAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       258 d~~i~vwd~~~~~--~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      -..+.++++...+  .....+.....      .+....+.   +..|.+.+ ++.|+++++++
T Consensus       461 ~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi---~d~lYtvS-~~~i~~~~l~t  519 (521)
T PF09826_consen  461 FQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYI---GDTLYTVS-DNGIKAYDLNT  519 (521)
T ss_pred             cceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEE---CCEEEEEE-CCEEEEEehHh
Confidence            1347788877332  22223332222      25555555   55788876 45699998865

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.79  E-value=21  Score=33.60  Aligned_cols=167  Identities=10%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             ecCcceeEEEEe---cC--CCCeEEEEEecccccccCceEEEEe------cCCCCC-----cceeeeeec----CCCCee
Q 021121            5 KTPFNGYSVKFS---PF--YESRLAVATAQNFGILGNGRVHVLD------LSPAAP-----ALTELVAFD----TADGVY   64 (317)
Q Consensus         5 ~~~~~v~~~~~~---p~--~~~~~~~~~~~~~~~~~~g~i~i~~------~~~~~~-----~~~~~~~~~----~~~~v~   64 (317)
                      ....+|..|+|.   ..  +...+++.-.       ...+.|+.      +.....     ....+..+.    ...+..
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-------~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a  149 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-------ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA  149 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-------CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence            456788999998   31  1223444433       34777877      221111     112222222    234678


Q ss_pred             EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCC----------cceEEEEEecCCCCEEEEEcCCCEEE
Q 021121           65 DLAWSESHDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHT----------REVHSADYNPTRRDSFITSSWDDTVK  132 (317)
Q Consensus        65 ~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~dg~v~  132 (317)
                      +++|+|.....||.....|.-.||++......  ........+.          ..-..+.|.++.. .|+.++. ..+.
T Consensus       150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~l~  227 (765)
T PF10214_consen  150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SKLM  227 (765)
T ss_pred             eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-CceE
Confidence            99999988789999999999999999321111  1111111111          2234788887766 6666664 5789


Q ss_pred             EEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC
Q 021121          133 LWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE  181 (317)
Q Consensus       133 iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (317)
                      ++|+++.....  ........|..+.-+|.+..+++.-+ ...|...|+..
T Consensus       228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             EEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            99999876533  12234567888888887555554443 35777788776

These proteins are found in fungi.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.70  E-value=21  Score=33.56  Aligned_cols=162  Identities=10%  Similarity=0.157  Sum_probs=97.9

Q ss_pred             cCCcceEEEEEe---cC--CCCEEEEEcCCCEEEEEEcCCC---------------ceeEEeec---cccceEEEEEecC
Q 021121          104 EHTREVHSADYN---PT--RRDSFITSSWDDTVKLWTVDRP---------------TSVRTFKE---HAYCVYNATWNPR  160 (317)
Q Consensus       104 ~~~~~v~~~~~~---~~--~~~~l~~~~~dg~v~iwd~~~~---------------~~~~~~~~---~~~~v~~~~~~~~  160 (317)
                      ....+|..|+|.   ..  .....+..-....+.|+...-.               .++..+..   ...+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            457889999998   21  1112444455667777772211               22223321   2346789999999


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCC----Cceeeec-cC----------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121          161 HSDVFCSASGDCTLRIWDVREM----GSTMIIP-AH----------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNY  225 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~-~~----------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~  225 (317)
                      ....||+....|...|||+...    .....+. ..          ......+.|.+ +.+.|+.++ ...+.++|+++.
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~~  234 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLMLIDFESN  234 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceEEEECCCC
Confidence            8889999999999999999211    1111111 11          12234788887 666666665 456899999876


Q ss_pred             CccE-EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          226 RVPI-AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       226 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .... .........|..+.-+|....+++.-. ...|...++..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            5412 122234467888888887433222222 35677778776

These proteins are found in fungi.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=88.56  E-value=17  Score=32.23  Aligned_cols=218  Identities=12%  Similarity=0.146  Sum_probs=101.6

Q ss_pred             ceeEEEEecCCCC--eEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC---CCC------eEE
Q 021121            9 NGYSVKFSPFYES--RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES---HDS------LLI   77 (317)
Q Consensus         9 ~v~~~~~~p~~~~--~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~------~l~   77 (317)
                      ...++.+-.  ++  .+.+++..     +|+.+.-|...    .+..+..+..-++|.+++..+.   +..      .|+
T Consensus       257 ~~s~l~~l~--~g~d~lf~gs~~-----gds~l~~~~~~----~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv  325 (504)
T PF10433_consen  257 IASSLTYLK--NGGDYLFVGSEF-----GDSQLLQISLS----NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLV  325 (504)
T ss_dssp             -ESEEEEES--TT--EEEEEESS-----S-EEEEEEESE----SEEEEEEE----SEEEEEEE-TSSSSS-------EEE
T ss_pred             hhheEEEEc--CCCEEEEEEEec-----CCcEEEEEeCC----CcEEEEeccCcCCccceEEeccccCCCCcccccceEE
Confidence            345566665  45  66666553     37676666622    3566666777889999998632   222      455


Q ss_pred             EEE---cCCeEEEEEeCCCCCCCCceeeccC--CcceEEEEEecCCCCEEEEEcCCCEEEEEEcC---CCceeEEee--c
Q 021121           78 AAV---ADGSVKIYDTALPPTANPIRSLHEH--TREVHSADYNPTRRDSFITSSWDDTVKLWTVD---RPTSVRTFK--E  147 (317)
Q Consensus        78 ~~~---~dg~i~v~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~--~  147 (317)
                      +++   .+|.+++..-.-+-. ........-  -..++.+........+++.+.. ..-+++.+.   ..+.+....  +
T Consensus       326 ~~sG~g~~gsL~~lr~Gi~~~-~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~-~~T~vl~~~~~d~~e~~~e~~~~~  403 (504)
T PF10433_consen  326 ACSGAGKRGSLRILRNGIGIE-GLELASSELPGVTGIWTLKLSSSDHSYLVLSFP-NETRVLQISEGDDGEEVEEVEEDG  403 (504)
T ss_dssp             EEESSGGG-EEEEEEESBEEE---EEEEEEESTEEEEEEE-SSSSSBSEEEEEES-SEEEEEEES----SSEEEEE---T
T ss_pred             EEECcCCCCcEEEEeccCCce-eeeeeccCCCCceEEEEeeecCCCceEEEEEcC-CceEEEEEecccCCcchhhhhhcc
Confidence            554   468898886432211 011111111  3344445443322335555554 455566653   233332221  1


Q ss_pred             c---ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          148 H---AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       148 ~---~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      .   ...+.+-.+.   ...++=.... .|++.+....+....... ....|.+.+..   +.+++.+..++.+..+.+.
T Consensus       404 f~~~~~Tl~~~~~~---~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~  476 (504)
T PF10433_consen  404 FDTDEPTLAAGNVG---DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELD  476 (504)
T ss_dssp             S-SSS-EEEEEEET---TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEE
T ss_pred             CCCCCCCeEEEEcC---CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEE
Confidence            1   1122222222   3455555544 488888877666655432 34455555554   3455566668889999888


Q ss_pred             CCCccEEEEec----CCCceeEEEecC
Q 021121          224 NYRVPIAVLNG----HGYAVRKVKFSP  246 (317)
Q Consensus       224 ~~~~~~~~~~~----~~~~v~~~~~~~  246 (317)
                      ...........    ....|.|+...|
T Consensus       477 ~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  477 DNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             TTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCceeeeeeccccccCCCceEEEEeCC
Confidence            75542232211    456788887766

...

>PLN02153 epithiospecifier protein

Probab=88.26  E-value=14  Score=30.79  Aligned_cols=51  Identities=12%  Similarity=0.070  Sum_probs=26.2

Q ss_pred             CeEEEEeCCCCCceee-----eccCccceEEEEecCCCCcEEEEEecC--------------CcEEEEEccCC
Q 021121          172 CTLRIWDVREMGSTMI-----IPAHEFEILACDWNKYDDCLIASASVD--------------KSIKIWDVRNY  225 (317)
Q Consensus       172 g~i~i~d~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~  225 (317)
                      ..+.+||+.+.+=...     .+... ...+++..  ++.+++.|+..              ..+..||..+.
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSAR-SVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCc-ceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            4588899876532211     11111 11222222  56778887752              25778887654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.22  E-value=15  Score=31.03  Aligned_cols=188  Identities=12%  Similarity=0.082  Sum_probs=102.7

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec----CCCC--eEEEEeCC---CeEEEEeCCCC-Cceeeecc
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP----RHSD--VFCSASGD---CTLRIWDVREM-GSTMIIPA  190 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--~l~~~~~d---g~i~i~d~~~~-~~~~~~~~  190 (317)
                      +++....++-+.+||++ |+.+..+.  .+.++.+..-.    .+..  ++++...+   ..|++|.+... ..+..+..
T Consensus        70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~  146 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD  146 (381)
T ss_dssp             EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred             eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence            78888889999999997 55556554  23334333221    2122  23333332   46999977532 22332221


Q ss_pred             -------CccceEEEEe--cCCCCc-EEEEEecCCcEEEEEccCCC------ccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          191 -------HEFEILACDW--NKYDDC-LIASASVDKSIKIWDVRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       191 -------~~~~v~~i~~--~~~~~~-~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                             ....++.+++  +|.++. +++....+|.+..|.+....      .+++.+.. ...+-.|....... .|+.
T Consensus       147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g-~LYv  224 (381)
T PF02333_consen  147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG-RLYV  224 (381)
T ss_dssp             TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT-EEEE
T ss_pred             CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC-CEEE
Confidence                   1123455554  453444 56667788988888775321      13445543 34788888887777 5888


Q ss_pred             eecCCeEEEEeccccc----ceeeeee--cccceeEeEEEEec--cCC-eEEEeecCCcEEEEecCCC
Q 021121          255 CSYDMTVCLWDFMVED----ALVGRYD--HHTEFAVGVDMSVL--VEG-LLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       255 ~~~d~~i~vwd~~~~~----~~~~~~~--~~~~~v~~~~~~~~--~~~-~l~s~~~dg~i~~w~~~~~  313 (317)
                      +-++.-|.-|+.+...    .++....  +....|..|+.-..  +.. +|+|.-.+++..+|+....
T Consensus       225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8888777777765322    2222222  23456788888643  223 5555557889999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=88.21  E-value=18  Score=32.08  Aligned_cols=251  Identities=10%  Similarity=0.106  Sum_probs=116.3

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC-CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCC
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP   98 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~   98 (317)
                      ...++.+..       +|.++...+..... ...+..++. .....++.+..++..+++.|+.-|.=.++.+... ....
T Consensus       222 ~~~~lL~~e-------~G~l~~l~l~~~~~-~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~-~l~~  292 (504)
T PF10433_consen  222 GDRILLQDE-------DGDLYLLTLDNDGG-SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS-NLEV  292 (504)
T ss_dssp             SSEEEEEET-------TSEEEEEEEEEEEE-EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE-SEEE
T ss_pred             CCEEEEEeC-------CCeEEEEEEEECCC-eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC-CcEE
Confidence            445555554       89998888876542 112333333 4556677777654348888888776555555522 2233


Q ss_pred             ceeeccCCcceEEEEEecC---CCC------EEEEEc---CCCEEEEEEcCCCceeE--E--eecc--ccceEEEEEecC
Q 021121           99 IRSLHEHTREVHSADYNPT---RRD------SFITSS---WDDTVKLWTVDRPTSVR--T--FKEH--AYCVYNATWNPR  160 (317)
Q Consensus        99 ~~~~~~~~~~v~~~~~~~~---~~~------~l~~~~---~dg~v~iwd~~~~~~~~--~--~~~~--~~~v~~~~~~~~  160 (317)
                      +..+. .-++|..++..+.   +..      .+++++   .+|.+++..-  |-...  .  ....  -..++.+.....
T Consensus       293 ~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~  369 (504)
T PF10433_consen  293 LDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSS  369 (504)
T ss_dssp             EEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSS
T ss_pred             EEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCC
Confidence            33333 3578888888532   221      344443   5678888742  32222  1  1111  233455544432


Q ss_pred             CCCeEEEEeCCCeEEEEeCC---CCCceeee-----ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121          161 HSDVFCSASGDCTLRIWDVR---EMGSTMII-----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~---~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      +..+++.+..+ .-+++.+.   ..+.+..+     ......+.+-.+   .+..++=.+. ..|++.+....+......
T Consensus       370 ~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~---~~~~ivQVt~-~~i~l~~~~~~~~~~~w~  444 (504)
T PF10433_consen  370 DHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV---GDGRIVQVTP-KGIRLIDLEDGKLTQEWK  444 (504)
T ss_dssp             SBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEE---TTTEEEEEES-SEEEEEESSSTSEEEEEE
T ss_pred             CceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc---CCCeEEEEec-CeEEEEECCCCeEEEEEe
Confidence            24566555554 44455553   23332222     111111222222   1334444443 458888877655322222


Q ss_pred             ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec----ccceeEeEEEEe
Q 021121          233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH----HTEFAVGVDMSV  290 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~  290 (317)
                      ......|.+.+...  . .++.+..++.+..+.+............    ....|.++...|
T Consensus       445 ~~~~~~I~~a~~~~--~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  445 PPAGSIIVAASIND--P-QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             -TTS---SEEEESS--S-EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCCCCeEEEEEECC--C-EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            33455676666653  3 3555556888999988776532222211    356677777765

...

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.77  E-value=4.5  Score=36.25  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CeeEEEecC---CCCCeEEEEEcCCeEEEEEeCCC
Q 021121           62 GVYDLAWSE---SHDSLLIAAVADGSVKIYDTALP   93 (317)
Q Consensus        62 ~v~~~~~~~---~~~~~l~~~~~dg~i~v~~~~~~   93 (317)
                      ....++.++   ++..++++.+.|+.+|+||+.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~  250 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG  250 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence            455566655   23479999999999999999876

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02193 nitrile-specifier protein

Probab=87.15  E-value=20  Score=31.47  Aligned_cols=144  Identities=10%  Similarity=0.062  Sum_probs=67.3

Q ss_pred             CeEEEEEcC-----CeEEEEEeCCCCCCCCceeecc--CCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCce
Q 021121           74 SLLIAAVAD-----GSVKIYDTALPPTANPIRSLHE--HTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPTS  141 (317)
Q Consensus        74 ~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~  141 (317)
                      .+.+.|+.+     ..+..||+.+. .+..+.....  ....-.++.. -++. +++.|+.+     ..+..||+.+.+-
T Consensus       230 ~lYvfGG~~~~~~~ndv~~yD~~t~-~W~~l~~~~~~P~~R~~h~~~~-~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        230 TLYVFGGRDASRQYNGFYSFDTTTN-EWKLLTPVEEGPTPRSFHSMAA-DEEN-VYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             EEEEECCCCCCCCCccEEEEECCCC-EEEEcCcCCCCCCCccceEEEE-ECCE-EEEECCCCCCCCcceEEEEECCCCEE
Confidence            566666654     35777787653 2222222110  0111112222 2334 66666654     3467788776532


Q ss_pred             eEEeec------cccceEEEEEecCCCCeEEEEeCC----CeEEEEeCCCCCceeeec----cCccceEEEEecCCCCcE
Q 021121          142 VRTFKE------HAYCVYNATWNPRHSDVFCSASGD----CTLRIWDVREMGSTMIIP----AHEFEILACDWNKYDDCL  207 (317)
Q Consensus       142 ~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~  207 (317)
                      . .+..      ..... .++.. + +++++.++.+    ..+.+||+.+.+=...-.    .......+++..  ++++
T Consensus       307 ~-~~~~~~~~~~~R~~~-~~~~~-~-gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~i  380 (470)
T PLN02193        307 F-HCSTPGDSFSIRGGA-GLEVV-Q-GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHI  380 (470)
T ss_pred             E-eCCCCCCCCCCCCCc-EEEEE-C-CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEE
Confidence            2 1110      11111 12222 3 5677777655    458899988753221110    011111222222  5678


Q ss_pred             EEEEecC--------------CcEEEEEccCCC
Q 021121          208 IASASVD--------------KSIKIWDVRNYR  226 (317)
Q Consensus       208 l~~~~~d--------------~~i~v~d~~~~~  226 (317)
                      ++.|+..              ..+.+||+.+.+
T Consensus       381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             EEECCccCCccccccCccceeccEEEEEcCcCE
Confidence            8888753              247788887643

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.62  E-value=27  Score=32.40  Aligned_cols=236  Identities=13%  Similarity=0.235  Sum_probs=0.0

Q ss_pred             CCceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121            1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         1 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      |.+|.|-..++.+.|.-+ .+-++....       |..       +.......+.  .-.++|...+|+.|. ..++...
T Consensus        70 l~s~~hf~~~~~~~f~~~-~gDii~~~~-------dp~-------p~e~~~eivG--~v~nGIvaa~wS~DE-~~~cvvt  131 (1243)
T COG5290          70 LLSFKHFHVLTFEYFLID-EGDIIHLVN-------DPT-------PAELEMEIVG--KVSNGIVAASWSADE-KTWCVVT  131 (1243)
T ss_pred             hhhhhhhhhhheeeEEec-CCcEEEEEc-------CCC-------cccchhhhhc--cccCceEEEeeccCC-ceEEEEE


Q ss_pred             cCCeEEEEEeCCCCCCCCceeeccCCcce------EEEEEe------------------------cCCCCEEEEEcCCCE
Q 021121           81 ADGSVKIYDTALPPTANPIRSLHEHTREV------HSADYN------------------------PTRRDSFITSSWDDT  130 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~~~~~~~~~~~~~v------~~~~~~------------------------~~~~~~l~~~~~dg~  130 (317)
                      .+..|.+++    +...++....-..+..      ..+.|.                        ..|.  +........
T Consensus       132 ~~r~il~~~----k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~--l~avd~~k~  205 (1243)
T COG5290         132 STREILLFD----KYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGD--LFAVDTNKK  205 (1243)
T ss_pred             cCceEEEEe----ccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccc--eeEeeCCce


Q ss_pred             EEEE--EcC--------------------CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCe-----EEEEeCCCC-
Q 021121          131 VKLW--TVD--------------------RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT-----LRIWDVREM-  182 (317)
Q Consensus       131 v~iw--d~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~-  182 (317)
                      +..|  |.+                    .|+.-..-....+.-..+.|-|+ +..+++-..||.     |.++..+.. 
T Consensus       206 ~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpq-gS~~ati~td~~~~S~~ViFfErNGLr  284 (1243)
T COG5290         206 IIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQ-GSKYATIGTDGCSTSESVIFFERNGLR  284 (1243)
T ss_pred             EEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccC-CceeeeeccCCCCCcceEEEEccCCcc


Q ss_pred             -CceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE
Q 021121          183 -GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV  261 (317)
Q Consensus       183 -~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  261 (317)
                       .....-.+....+..++|+- ....++.+. .+.+.+|-..+..- .....-.-..+.-+.|+|...+-|.-.+.+...
T Consensus       285 HGef~lr~~~dEk~~~~~wn~-~s~vlav~~-~n~~~lwttkNyhW-YLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~  361 (1243)
T COG5290         285 HGEFDLRVGCDEKAFLENWNL-LSTVLAVAE-GNLLKLWTTKNYHW-YLKVERQIPGISYVKWHPEEKNTLLFRDGERIL  361 (1243)
T ss_pred             cCCccccCCchhhhhhhhhhH-HHHHHHHhh-cceEEEEEccceEE-EEEEeecCCCcceeeeccccCcEEEEecCCeEE


Q ss_pred             EEE
Q 021121          262 CLW  264 (317)
Q Consensus       262 ~vw  264 (317)
                      +++
T Consensus       362 ~V~  364 (1243)
T COG5290         362 RVF  364 (1243)
T ss_pred             EEE

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.28  E-value=8.8  Score=36.95  Aligned_cols=115  Identities=16%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ..++|.+++=.   .|.++.+.++        +|.+|+++.+.. +..+...+.+--|.++.  --. ++|+.|..-..|
T Consensus      1096 ~KGtVsavceV---~G~l~~~~Gq--------KI~v~~l~r~~~-ligVaFiD~~~yv~s~~--~vk-nlIl~gDV~ksi 1160 (1366)
T KOG1896|consen 1096 QKGTVSAVCEV---RGHLLSSQGQ--------KIIVRKLDRDSE-LIGVAFIDLPLYVHSMK--VVK-NLILAGDVMKSI 1160 (1366)
T ss_pred             cccceEEEEEe---ccEEEEccCc--------EEEEEEeccCCc-ceeeEEeccceeEEehh--hhh-hheehhhhhhce
Confidence            34556555443   4788887766        999999966552 44444444433333332  223 578888777778


Q ss_pred             EEEEeCCCCCCCCceeec--cCCcceEEEEEecCCCC-EEEEEcCCCEEEEEEcC
Q 021121           86 KIYDTALPPTANPIRSLH--EHTREVHSADYNPTRRD-SFITSSWDDTVKLWTVD  137 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~  137 (317)
                      .+..+...  ...+..+.  ...-.+.++.|.-+|.+ .++++..++.|++|-..
T Consensus      1161 sfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1161 SFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             EEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            88877643  22222222  23346788888777654 57788889998887543

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=86.11  E-value=13  Score=34.95  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=62.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEE-EecCC-----cEEEEEccCCCccEEEEecCC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS-ASVDK-----SIKIWDVRNYRVPIAVLNGHG  236 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~-----~i~v~d~~~~~~~~~~~~~~~  236 (317)
                      ++.......+.|.+-|.....+...-..+..++.+-+|+| +++.|+- .+.++     .|++-|+++...-+..+.-.+
T Consensus       320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~  398 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN  398 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence            3444443445888888776555443134678899999999 9988887 44444     488999988665556666667


Q ss_pred             CceeEEEecCCCCeeEE
Q 021121          237 YAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~  253 (317)
                      ..|..-...++|...|+
T Consensus       399 aaiprwrv~e~gdt~iv  415 (912)
T TIGR02171       399 AAIPRWRVLENGDTVIV  415 (912)
T ss_pred             ccccceEecCCCCeEEE
Confidence            78888888888876444

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=85.67  E-value=32  Score=32.40  Aligned_cols=138  Identities=11%  Similarity=0.244  Sum_probs=79.7

Q ss_pred             cCCCEEEEEEcCCCceeEEeeccccceEEEEE-ecCCCC--------eEEEEeCCCeEEEEeC----CCCCce-----ee
Q 021121          126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW-NPRHSD--------VFCSASGDCTLRIWDV----REMGST-----MI  187 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--------~l~~~~~dg~i~i~d~----~~~~~~-----~~  187 (317)
                      +.|+.+.+|+..++...+.+......|..+.. -|. .+        +|+.++ ...+.++-+    ++++..     ..
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPk-antFvs~i~hlL~vAT-~~e~~ilgvs~d~~T~Els~fnTgl~  176 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPK-ANTFVSRISHLLFVAT-EKEVMILGVSKDTKTGELSLFNTGLV  176 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccC-CcccHHhhhhhhhhhh-hheeeEEEEEeccccceeEEEecceE
Confidence            45789999999987666555544444544443 232 22        222221 223333322    222211     11


Q ss_pred             eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-----------c-----------cE-EEEecCCCceeEEEe
Q 021121          188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR-----------V-----------PI-AVLNGHGYAVRKVKF  244 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----------~-----------~~-~~~~~~~~~v~~~~~  244 (317)
                      .......|.|+.-+. +|+.+++|..|  ..+|.+.-..           .           |. .....|+..|..++.
T Consensus       177 vsvqGinV~civs~e-~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v  253 (1263)
T COG5308         177 VSVQGINVRCIVSEE-DGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV  253 (1263)
T ss_pred             EeccCceeEEEEecc-CCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence            122345688888887 89999988777  6677654110           0           00 112246678888998


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccc
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ..... +|.+-..-..|+-|.+...
T Consensus       254 DqsRg-~ly~Lr~kS~Vray~itkn  277 (1263)
T COG5308         254 DQSRG-LLYVLRKKSAVRAYSITKN  277 (1263)
T ss_pred             ccccc-ceeeecccceeeeEeeecc
Confidence            87665 7888888888888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		9e-19
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-18
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-18
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-18
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-18
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-18
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-18
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-18
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-18
2h9l_A	329	Wdr5delta23 Length = 329		3e-18
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-18
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-18
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-18
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-18
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-18
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-18
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-18
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-18
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-17
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-13
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		8e-13
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-06
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-10
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-09
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-05
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		1e-07
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		8e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		6e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		9e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		9e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		2e-05
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		6e-05
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		6e-05
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		7e-05
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 10/180 (5%)
Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD------RPTSVRT-FKEHA 149
           NP   L  H +E +   +NP      +++S D T+ LW +       +    +T F  H 
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
             V + +W+  H  +F S + D  L IWD R   ++     + AH  E+    +N Y + 
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           ++A+ S DK++ +WD+RN ++ +     H   + +V++SPH   +LAS   D  + +WD 
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 98  PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRT------FKEHAY 150
           P   L  H +E +   +NP      +++S D T+ LW ++  P   R       F  H  
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCL 207
            V +  W+  H  +F S + D  L IWD R   ++     + AH  E+    +N Y + +
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           +A+ S DK++ +WD+RN ++ +     H   + +V++SPH   +LAS   D  + +WD 
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 98  PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRT------FKEHAY 150
           P   L  H +E +   +NP      +++S D T+ LW ++  P   R       F  H  
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCL 207
            V +  W+  H  +F S + D  L IWD R   ++     + AH  E+    +N Y + +
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           +A+ S DK++ +WD+RN ++ +     H   + +V++SPH   +LAS   D  + +WD 
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 10/180 (5%)
Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRT------FKEHA 149
            P   L  H +E +   +NP      +++S D T+ LW ++  P   R       F  H 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
             V +  W+  H  +F S + D  L IWD R   ++     + AH  E+    +N Y + 
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           ++A+ S DK++ +WD+RN ++ +     H   + +V++SPH   +LAS   D  + +WD 
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 162
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 222 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 281 EDNLVYIWN 289

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 144
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 204 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 263 EDNLVYIWN 271

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 160
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 220 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 279 EDNLVYIWN 287

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 260 EDNLVYIWN 268

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 144
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 204 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 263 EDNLVYIWN 271

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 79  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 137
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 197 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 256 EDNLVYIWN 264

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 144
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 204 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 263 EDNLVYIWN 271

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 260 EDNLVYIWN 268

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 97  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 155
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 215 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 274 EDNLVYIWN 282

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 85  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 143
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 203 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 262 EDNLVYIWN 270

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 81  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 139
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 199 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 258 EDNLVYIWN 266

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 80  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 138
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 198 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 257 EDNLVYIWN 265

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 76  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 134
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 194 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 253 EDNLVYIWN 261

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 80  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 138
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 198 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 257 EDNLVYIWN 265

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
            D LVY+W 
Sbjct: 260 EDNLVYIWN 268

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRT------FKEHA 149
           NP   L  H +E +   +N       +++S D TV LW ++  P   +       F  H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
             V +  W+  H  +F S + D  L IWD R   ++    ++ AH  E+    +N Y + 
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           ++A+ S DK++ +WD+RN ++ +     H   + +V +SPH   +LAS   D  + +WD 
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRT------FKEHA 149
           NP   L  H +E +   +N       +++S D TV LW ++  P   +       F  H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
             V +  W+  H  +F S + D  L IWD R   ++    ++ AH  E+    +N Y + 
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           ++A+ S DK++ +WD+RN ++ +     H   + +V +SPH   +LAS   D  + +WD 
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 145 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILA 197
            + H    Y  +WN   S    SAS D T+ +WD+       + + +  I   H   +  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 198 CDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASC 255
             W+   + L  S + D+ + IWD R+     P  +++ H   V  + F+P+   +LA+ 
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           S D TV LWD       +  ++ H +    V  S   E +LAS+G D  + VW
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D T+ LWD+     L     H  E + +  + SV     + S  
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
            D +VY+W 
Sbjct: 260 EDNMVYIWN 268

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+ 
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                 +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
           VKFSP+ + +LA+ + D  + LWD+     L     H  E + +  + SV     + S  
Sbjct: 201 VKFSPNGKYILAA-TLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
            D +VY+W 
Sbjct: 260 EDNMVYIWN 268

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 71  SHDSLLIAAVAD-GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
           S D   IA+ +D  +VK+++         +++L  H+  V    ++P  + +  ++S D 
Sbjct: 312 SPDGQTIASASDDKTVKLWN----RNGQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 366
Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
           TVKLW  +    ++T   H+  V    ++P       SAS D T+++W+ R       + 
Sbjct: 367 TVKLWNRNGQL-LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT 423
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
            H   +    ++  DD  IASAS DK++K+W+ RN ++ +  L GH  +VR V FSP  +
Sbjct: 424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQ 480
Query: 250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
             +AS S D TV LW+   +  L+     H+    GV  S   +  +AS   D+ V +W
Sbjct: 481 T-IASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW 535

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 32/266 (12%)
Query: 58  DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
           +T+ GVY L +    D  +++ + D ++KI+D     T    R L  HT  V    Y+  
Sbjct: 131 ETSKGVYCLQYD---DQKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYDER 184
Query: 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
                IT S D TV++W V+    + T   H   V +  +N   + +  + S D ++ +W
Sbjct: 185 ---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW 238
Query: 178 DV---REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
           D+    ++    ++  H   +   D   +DD  I SAS D++IK+W+       +  LNG
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVD---FDDKYIVSASGDRTIKVWNTSTCEF-VRTLNG 294
Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF--AVGVDMSVLV 292
           H   +  +++   R  L+ S S D T+ LWD     A +   + H E    +  D   +V
Sbjct: 295 HKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDNKRIV 350
Query: 293 EGLLASTGWDELVYVWQ--QGMDPRA 316
            G      +D  + VW     +DPRA
Sbjct: 351 SG-----AYDGKIKVWDLVAALDPRA 371

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
           V D++W    +S  IAAV +G  +     L  T     +L    R ++S D+ P+R    
Sbjct: 106 VKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 163
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
           I+ S D+TV ++         TF EH   V++  +NP  S +F S  GD T+ +++  + 
Sbjct: 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDG 222
Query: 183 GSTMIIP-------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227
             T +         AH   +    W+  D   IASAS DK+IKIW+V   +V
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKV 273

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 101/248 (40%), Gaps = 26/248 (10%)
Query: 76  LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
           +I+   D +V I++    P      +  EHT+ VHS  YNP     F ++  D T+ L+ 
Sbjct: 163 IISGSDDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN 218
Query: 136 VDRPTSVRTFKE-------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
               T    F++       H+  V+  TW+P  + +  SAS D T++IW+V  +     I
Sbjct: 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTI 277
Query: 189 PAH---EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
           P     E + L   W K     + S S +  I   +     +   V  GH  A+  +  S
Sbjct: 278 PVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNPELGSID-QVRYGHNKAITALSSS 333
Query: 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRY--DHHTEFAVGVDMSVLVEGLLASTGWDE 303
              + L  S   +  +  WD  +   +  R   D H     G+  +   +G L +  WD+
Sbjct: 334 ADGKTLF-SADAEGHINSWD--ISTGISNRVFPDVHATMITGIKTT--SKGDLFTVSWDD 388
Query: 304 LVYVWQQG 311
            + V   G
Sbjct: 389 HLKVVPAG 396

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 29/268 (10%)
Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D V D+++  S   LL +  AD ++K++D         IR++H H   V S    P   D
Sbjct: 151 DSVQDISFDHS-GKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVSIMPNG-D 205
Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             +++S D T+K+W V     V+TF  H   V     N +   +  S S D T+R+W V 
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVA 264
Query: 181 EMGSTMIIPAHEFEILACDW---NKYDDC----------------LIASASVDKSIKIWD 221
                  +  H   +    W   + Y                    + S S DK+IK+WD
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 281
           V +  + +  L GH   VR V F    + +L SC+ D T+ +WD+  +  +    + H  
Sbjct: 325 V-STGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCM-KTLNAHEH 381
Query: 282 FAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           F   +D       ++  +  D+ V VW+
Sbjct: 382 FVTSLDFHKTAPYVVTGSV-DQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 8/174 (4%)
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI 195
           + RP        H   V    ++P  S V  SAS D T+++WD         +  H   +
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC 255
               ++ +   L+AS S D +IK+WD + +   I  ++GH + V  V   P+  +++ S 
Sbjct: 154 QDISFD-HSGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIV-SA 210
Query: 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
           S D T+ +W+       V  +  H E+   V  +   +G L+AS   D+ V VW
Sbjct: 211 SRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVW 261

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           ++ SAS D +IK+WD          L GH  +V+ + F  H   LLASCS DMT+ LWDF
Sbjct: 122 VMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDF 179
Query: 267 MVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
              + +   + H    +    +S++  G  + S   D+ + +W+
Sbjct: 180 QGFECIRTMHGHDHNVS---SVSIMPNGDHIVSASRDKTIKMWE 220

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 23/222 (10%)
Query: 65  DLAWSESHDSLLIAAVAD-GSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSF 122
           DL WS  H++ +IA   D GS+++Y T     A N +     H+  V +  +N  + +  
Sbjct: 72  DLDWS--HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVL 129
Query: 123 ITSSWDDTVKLWTVDR---------PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173
            +   +  + +W +++         P +          V +  WN   + VF SA     
Sbjct: 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF 189
Query: 174 LRIWDVR------EMGSTMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRN 224
             IWD++       +  T      + ++   +W+  +   +A+A+    D SI IWD+RN
Sbjct: 190 ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
Query: 225 YRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              P+  LN GH   +  + +     +LL S   D TV LW+
Sbjct: 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 48/278 (17%)
Query: 67   AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS 126
            +WS   D +++AA     V ++D         I + H  T  +   D++P    + I  S
Sbjct: 805  SWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHST--IQYCDFSPYDHLAVIALS 860
Query: 127  WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---- 182
                V+LW +D    V   + H   V+   ++P  S  F +AS D T+R+W+ +++    
Sbjct: 861  -QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNS 918
Query: 183  --------------GSTMIIPAHE---FEILACDWNKYD---------DCL------IAS 210
                            TM++        +++A    + D          CL      +A 
Sbjct: 919  AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Query: 211  ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270
               D +IKI ++ N RV  + + GH  AVR ++F+   + L++S S D  + +W++   D
Sbjct: 979  GDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGD 1036
Query: 271  ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
             +  +    T      D  +L +  L S  +D  V VW
Sbjct: 1037 YVFLQAHQETV----KDFRLLQDSRLLSWSFDGTVKVW 1070

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 48/278 (17%)
Query: 67   AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS 126
            +WS   D +++AA     V ++D         I + H  T  +   D++P    + I  S
Sbjct: 812  SWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHST--IQYCDFSPYDHLAVIALS 867
Query: 127  WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---- 182
                V+LW +D    V   + H   V+   ++P  S  F +AS D T+R+W+ +++    
Sbjct: 868  -QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNS 925
Query: 183  --------------GSTMIIPAHE---FEILACDWNKYD---------DCL------IAS 210
                            TM++        +++A    + D          CL      +A 
Sbjct: 926  AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Query: 211  ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270
               D +IKI ++ N RV  + + GH  AVR ++F+   + L++S S D  + +W++   D
Sbjct: 986  GDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGD 1043
Query: 271  ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
             +  +    T      D  +L +  L S  +D  V VW
Sbjct: 1044 YVFLQAHQETV----KDFRLLQDSRLLSWSFDGTVKVW 1077

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
           +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           T     +    SAS D TLR+WDV    +      H+ ++++ D +K    +I S S DK
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
           +IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+   F 
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +E   +G   +        D +     L+AS G D  + +W 
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
           +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           T     +    SAS D TLR+WDV    +      H+ ++++ D +K    +I S S DK
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
           +IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+   F 
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +E   +G   +        D +     L+AS G D  + +W 
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
           +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           T     +    SAS D TLR+WDV    +      H+ ++++ D +K    +I S S DK
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
           +IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+   F 
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +E   +G   +        D +     L+AS G D  + +W 
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
           +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           T     +    SAS D TLR+WDV    +      H+ ++++ D +K    +I S S DK
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
           +IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+   F 
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +E   +G   +        D +     L+AS G D  + +W 
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
           +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V + 
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           T     +    SAS D TLR+WDV    +      H+ ++++ D +K    +I S S DK
Sbjct: 66  TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 123
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
           +IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+   F 
Sbjct: 124 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +E   +G   +        D +     L+AS G D  + +W 
Sbjct: 182 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 218

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 16/204 (7%)
Query: 69  SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD 128
           S+  D+++I+   D ++K+++     T   I +L+ HT  V     +  R    ++ S D
Sbjct: 165 SQMRDNIIISGSTDRTLKVWN---AETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRD 218
Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
            T+++W ++    +     H   V    ++ R      S + D  +++WD         +
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTL 275
Query: 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR 248
             H   + +    ++D   + S S+D SI++WDV      I  L GH      ++    +
Sbjct: 276 QGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMEL---K 328
Query: 249 RNLLASCSYDMTVCLWDFMVEDAL 272
            N+L S + D TV +WD      L
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCL 352

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS 162
           H   V +  + P     F +SS+D T+K+W  +  +   V  F+E  Y  + +  + +H 
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
            V     G   +++ D++    + I+  H  EILA  W+   D ++A+AS D  +K+WDV
Sbjct: 158 LVAVGTRGP-KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 223 RNYRVPIAVLNGH 235
           R     +  L+ H
Sbjct: 217 RRASGCLITLDQH 229

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI------IPAHEFEILACDWN 201
           H Y V    W P  + +F S+S D TL++WD   + +  +      + +H    ++    
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK-- 155
Query: 202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV 261
               CL+A  +    +++ D+++      +L GH   +  V +SP    +LA+ S D  V
Sbjct: 156 ---HCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRV 211
Query: 262 CLWDFMVEDALVGRYDHH 279
            LWD       +   D H
Sbjct: 212 KLWDVRRASGCLITLDQH 229

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
           +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           T     +    SAS D TLR+WDV    +      H+ ++ + D +K    +I S S DK
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
           +IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+   F 
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +E   +G   +        D +     L+AS G D  + +W 
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIXLWN 224

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 62  GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
           GV+ L ++  H  +L++   D +V+++D       +     +   R +   +Y   +   
Sbjct: 164 GVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-- 219
Query: 122 FITSSWDDTVKLWTVDRPTSVRTF-KEHAY--CVYNATWNP-----------------RH 161
            +T S D+T+ +W + + +SV    +EH Y    +    NP                  H
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279
Query: 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIW 220
            ++  S S D TL +WDV +M    I+  H   I +  ++ +   C+  SAS+D +I+IW
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDTTIRIW 337
Query: 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           D+ N  + +  L GH   V  ++ S      L S + D ++  WD
Sbjct: 338 DLENGEL-MYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWD 378

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 12/196 (6%)
Query: 73  DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTV 131
           D  ++ A  DG+  ++D     +   ++S H H  +V   D  P+   ++F++   D   
Sbjct: 166 DMQILTASGDGTCALWDV---ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH 191
            +W +     V+ F+ H   V +  + P   D F S S D T R++D+R      I    
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKE 281
Query: 192 E--FEILACDWNKYDDCLIASASVDKSIKIWDV-RNYRVPIAVLNGHGYAVRKVKFSPHR 248
              F   + D++     L A  + D +I +WDV +  RV I  L GH   V  ++ SP  
Sbjct: 282 SIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSI--LFGHENRVSTLRVSPD- 337
Query: 249 RNLLASCSYDMTVCLW 264
                S S+D T+ +W
Sbjct: 338 GTAFCSGSWDHTLRVW 353

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
             + + D  +RIWD+      MI+  HE +I + D+    D L+ S S D++++IWD+R 
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRT 196
Query: 225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD----FMVEDALVGRYDHHT 280
            +  + +    G  V  V  SP     +A+ S D  V +WD    F+VE     R D   
Sbjct: 197 GQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-----RLDSEN 249
Query: 281 EFAVGVDMSV 290
           E   G   SV
Sbjct: 250 ESGTGHKDSV 259

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 98  PIRSLHEHTREVHSADYNPTRRDSF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
           P R L  H+  V  +D   +   +F +++SWD +++LW +        F  H   V +  
Sbjct: 59  PDRRLEGHSAFV--SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA 116
Query: 157 WNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWN-KYDDCLIASASVD 214
           ++P +  +  S   D  LR+W+V+ E   T+   AH   +    ++   D  +I S   D
Sbjct: 117 FSPDNRQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
             +K+WD+   R+ +  L GH   V  V  SP   +L AS   D    LWD    +AL
Sbjct: 176 NLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWDLTKGEAL 231

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269
           SAS D S+++W+++N +     L GH   V  V FSP  R ++ S   D  + +W+   E
Sbjct: 84  SASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGE 141
Query: 270 DALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
                    HT++   V  S  ++  ++ S GWD LV VW
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            +T   D  + L+  D   +VRT         +A    R  ++  + +    L+IWD R+
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEIL-TVNSIGQLKIWDFRQ 221
Query: 182 MGST----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
            G+     + +      +   D +     ++A+   D  + IWDVR   +P+++L  H  
Sbjct: 222 QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEA 281
Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            + +V F P     L +CS D ++  WD
Sbjct: 282 EMWEVHFHPSNPEHLFTCSEDGSLWHWD 309

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 9/187 (4%)
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-- 180
           ++ S D  +K+W + +   + +++ HA  V     +P    VF S S D  + +WD R  
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
           +  S +   A  +   +  W+     +      + ++ + D ++      VL+   H   
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC---VLSSAVHSQC 259
Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298
           V  + FSPH    LAS S D ++ + D  + +    R   H +F      S L   LL +
Sbjct: 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--RSQAHRDFVRDATWSPLNHSLLTT 317
Query: 299 TGWDELV 305
            GWD  V
Sbjct: 318 VGWDHQV 324

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMG----STMIIPAHEFEILACDWNKYDDCLIASASV 213
           NP+   + C ASG     +  + + G    +  ++  H   +L   W  ++D +IAS S 
Sbjct: 43  NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102
Query: 214 DKSIKIWDVRN------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           D ++ +W++ +       R P+  L GH   V  V + P  +N+L S   D  + +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 62  GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
           GV+ L ++  H  +L++   D +V+++D       +     +   R +   +Y   +   
Sbjct: 164 GVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-- 219
Query: 122 FITSSWDDTVKLWTVDRPTSVRTF-KEHAY--CVYNATWNP-----------------RH 161
            +T S D+T+ +W + + +SV    +EH Y    +    NP                  H
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH 279
Query: 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIW 220
            ++  S S D TL +WDV +     I+  H   I +  ++ +   C+  SAS D +I+IW
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI--SASXDTTIRIW 337
Query: 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           D+ N  +    L GH   V  ++ S      L S + D ++  WD
Sbjct: 338 DLENGELXYT-LQGHTALVGLLRLSD---KFLVSAAADGSIRGWD 378

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMG----STMIIPAHEFEILACDWNKYDDCLIASASV 213
           NP+   +   ASG     +  + + G    +  ++  H   +L   W  ++D +IAS S 
Sbjct: 43  NPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSE 102
Query: 214 DKSIKIWDVRN------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           D ++ +W++ +       R P+  L GH   V  V + P  +N+L S   D  + +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 30/236 (12%)
Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
           V  +AW+ S + LL     D SV +++         +  L+ HT++V    ++P++ +  
Sbjct: 108 VKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELL 165
Query: 123 ITSSWDDTVKLW--TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
            ++S+DDTVKL+    D      T + H   V++  ++P       S S D T+RIW   
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQY 224
Query: 181 EMGSTMIIPA----------------HEFEILACDWNKYDDCLIASASVDKSIKIWDVR- 223
             G+   +                  H   I    W +    L A+A  D +I+++    
Sbjct: 225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL-ATACGDDAIRVFQEDP 283
Query: 224 -------NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
                   + +   +   H   V  V ++P    LLASCS D  V  W +   + L
Sbjct: 284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 157 WNPRHSDVFCSASGDCTLRIWDVRE---MGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
           WNP  + +  S  GD  +RIW       +  +++   H+  +    W+   +  +ASAS 
Sbjct: 24  WNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASF 81
Query: 214 DKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-- 270
           D +  IW         +  L GH   V+ V ++P   NLLA+CS D +V +W+   ED  
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313
             V   + HT+    V      E LLAS  +D+ V ++++  D
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEED 182

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
           ++ SWD  ++LW +    S R F  H   V +  ++  +  +  SAS D T+++W+    
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGE 504
Query: 183 GSTMIIPAHEFEILACDW--------NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
               I    E      DW        N     ++ SAS DK++K+W++ N ++  + L G
Sbjct: 505 CKYTISEGGEGH---RDWVSCVRFSPNTLQPTIV-SASWDKTVKVWNLSNCKLR-STLAG 559
Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           H   V  V  SP   +L AS   D  V LWD 
Sbjct: 560 HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDL 590

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 10/209 (4%)
Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPTRRD 120
           V  +A +     ++++A  D ++ ++      T    P R+L  H+  V  +D   +   
Sbjct: 41  VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV--SDVVISSDG 98
Query: 121 SF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
            F ++ SWD T++LW +   T+ R F  H   V +  ++  +  +  S S D T+++W+ 
Sbjct: 99  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNT 157
Query: 180 REMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
             +    +      E ++C        + +I S   DK +K+W++ N ++    +   GY
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217
Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
            +  V  SP   +L AS   D    LWD 
Sbjct: 218 -LNTVTVSPD-GSLCASGGKDGQAMLWDL 244

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 7/171 (4%)
Query: 144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE----ILACD 199
           T K H   V      P+  D+  SAS D T+ +W +    +   IP          ++  
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259
               D     S S D ++++WD+         + GH   V  V FS   R ++ S S D 
Sbjct: 93  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIV-SGSRDK 150
Query: 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
           T+ LW+ +       + + H+E+   V  S      ++ S GWD+LV VW 
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 10/209 (4%)
Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPTRRD 120
           V  +A +     ++++A  D ++ ++      T    P R+L  H+  V  +D   +   
Sbjct: 18  VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV--SDVVISSDG 75
Query: 121 SF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
            F ++ SWD T++LW +   T+ R F  H   V +  ++  +  +  S S D T+++W+ 
Sbjct: 76  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNT 134
Query: 180 REMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
             +    +      E ++C        + +I S   DK +K+W++ N ++    +   GY
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194
Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
            +  V  SP   +L AS   D    LWD 
Sbjct: 195 -LNTVTVSPD-GSLCASGGKDGQAMLWDL 221

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 7/171 (4%)
Query: 144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE----ILACD 199
           T K H   V      P+  D+  SAS D T+ +W +    +   IP          ++  
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259
               D     S S D ++++WD+         + GH   V  V FS   R ++ S S D 
Sbjct: 70  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIV-SGSRDK 127
Query: 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
           T+ LW+ +       + + H+E+   V  S      ++ S GWD+LV VW 
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 208 IASASVDKSIKIWDVRNY-RVPIAVLNGHGYAVRKVKFS-PHRRNLLASCSYDMTVCLW 264
           +A+ S D+S+KI+DVRN  ++ IA L GH   V +V ++ P   N+LASCSYD  V +W
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 24/173 (13%)
Query: 162 SDVFCSASGDCTLRIWDV--REMGSTMIIP-------AHEFEILACDWNKYDDCLIASAS 212
           S V  S S D T+ IW +   E      IP        H    LA      ++C   S+S
Sbjct: 39  SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS---QENCFAISSS 95
Query: 213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
            DK++++WD+R          GH   V  V FSP  R +L S   +  + LW+ + E   
Sbjct: 96  WDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKF 153
Query: 273 -VGRYDHHTEFAVGVDMSVLVEG---------LLASTGWDELVYVWQQGMDPR 315
                ++H+++   V  S +++            AS GWD  + VW      R
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR 206

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           +  +TSS D T  LW ++      TF  H   V + +  P  + +F S + D + ++WDV
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 224
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
           RE         HE +I A  +    +   A+ S D + +++D+R  +  +   + +    
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 283
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
           +  V FS   R LLA   YD   C +WD +  D       H    +    + V  +G+  
Sbjct: 284 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 338
Query: 298 STG-WDELVYVWQ 309
           +TG WD  + +W 
Sbjct: 339 ATGSWDSFLKIWN 351

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           +  +TSS D T  LW ++      TF  H   V + +  P  + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
           RE         HE +I A  +    +   A+ S D + +++D+R  +  +   + +    
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
           +  V FS   R LLA   YD   C +WD +  D       H    +    + V  +G+  
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
           +TG WD  + +W 
Sbjct: 328 ATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           +  +TSS D T  LW ++      TF  H   V + +  P  + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR-NYRVPIAVLNGHGYA 238
           RE         HE +I A  +    +   A+ S D + +++D+R +  +     +     
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
           +  V FS   R LLA   YD   C +WD +  D       H    +    + V  +G+  
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
           +TG WD  + +W 
Sbjct: 328 ATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           +  +TSS D T  LW ++      TF  H   V + +  P  + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
           RE         HE +I A  +    +   A+ S D + +++D+R  +  +   + +    
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
           +  V FS   R LLA   YD   C +WD +  D       H    +    + V  +G+  
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
           +TG WD  + +W 
Sbjct: 328 ATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           +  +TSS D T  LW ++      TF  H   V + +  P  + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
           RE         HE +I A  +    +   A+ S D + +++D+R  +  +   + +    
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
           +  V FS   R LLA   YD   C +WD +  D       H    +    + V  +G+  
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
           +TG WD  + +W 
Sbjct: 328 ATGSWDSFLKIWN 340

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 88/213 (41%), Gaps = 7/213 (3%)
Query: 76  LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
           ++  +  G V+I++     T   +RS+      V +  +   R++  I  S D  ++++ 
Sbjct: 28  VLTTLYSGRVEIWNY---ETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFN 83
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFE 194
            +    V  F+ H   + +   +P    V  S S D T+++W+             HE  
Sbjct: 84  YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLA 253
           ++   +N  D    AS  +D+++K+W +        +  G    V  V + P   +  + 
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV 286
           + S D+T+ +WD+  +  +     H +  +  V
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 24/238 (10%)
Query: 52  TELVAFDTADG----VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTR 107
           T+LV   T  G    VY L W+   +  +++A  DG + +++     T+    ++  H  
Sbjct: 54  TDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNAL---TSQKTHAIKLHCP 109
Query: 108 EVHSADYNPTRRDSFITSSWDDTVKLWTV----DRPTSV---RTFKEHAYCVYNATWNPR 160
            V    + P  + S      D    ++ +    DR  ++   R    H     +  + P 
Sbjct: 110 WVMECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF------EILACDWNKYDDCLIASASVD 214
                 + SGD T  +WDV   G  + I   EF      ++L+   N  +  +  S S D
Sbjct: 169 QETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227
Query: 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
            ++++WD+R     +   +GH   +  VKF P  +    + S D T  L+D      L
Sbjct: 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQL 284

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 4/194 (2%)
Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN 154
           T   +RS+      V +  +   R++  I  S D  ++++  +    V  F+ H   + +
Sbjct: 44  TQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRS 102
Query: 155 ATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
              +P    V  S S D T+++W+             HE  ++   +N  D    AS  +
Sbjct: 103 IAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVEDAL 272
           D+++K+W +        +  G    V  V + P   +  + + S D+T+ +WD+  +  +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 273 VGRYDHHTEFAVGV 286
                H +  +  V
Sbjct: 222 ATLEGHMSNVSFAV 235

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 10/224 (4%)
Query: 76  LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
           ++  +  G V++++     T   +RS+      V +  +   R++  I  S D  ++++ 
Sbjct: 28  VLTTLYSGRVELWNYE---TQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFN 83
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFE 194
            +    V  F+ H   + +   +P    V  S S D T+++W+             HE  
Sbjct: 84  YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLA 253
           ++   +N  D    AS  +D+++K+W +        +  G    V  V + P   +  + 
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV---DMSVLVEG 294
           + S D+T+ +WD+  +  +     H +  +  V    + +++ G
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 10/224 (4%)
Query: 76  LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
           ++  +  G V++++     T   +RS+      V +  +   R++  I  S D  ++++ 
Sbjct: 28  VLTTLYSGRVELWNYE---TQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFN 83
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFE 194
            +    V  F+ H   + +   +P    V  S S D T+++W+             HE  
Sbjct: 84  YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLA 253
           ++   +N  D    AS  +D+++K+W +        +  G    V  V + P   +  + 
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV---DMSVLVEG 294
           + S D+T+ +WD+  +  +     H +  +  V    + +++ G
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 19/192 (9%)
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
           ++   D +VK+W + +   ++++  H+  V      P    +F S   D  + +WD R+ 
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 183 GSTMIIPAHEFEILACD-------WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG- 234
                 PA   +  A D       W+   D   A      ++ + +++N   P +     
Sbjct: 215 K-----PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN---PDSAQTSA 266
Query: 235 -HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE 293
            H   +  + +S H    LAS S D TV + D    +    R   H +F  GV  S L  
Sbjct: 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF--RDLSHRDFVTGVAWSPLDH 324
Query: 294 GLLASTGWDELV 305
               + GWD  V
Sbjct: 325 SKFTTVGWDHKV 336

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 66  LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
           LAW  +H S +      G + +++  +      I+ +      +    +NP   + F  S
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 184
Query: 126 SWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           S + T +L    +   +R F         +C  + + + R   V     G+  L   D +
Sbjct: 185 SMEGTTRLQDF-KGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK 242
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
           E+ +  +   H+ ++     N   D  +A+ASVD+++KIWD+R  R   + L    H + 
Sbjct: 243 ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 299
Query: 239 VRKVKFSPHRRNLLAS 254
           V    FSP    LL +
Sbjct: 300 VNAACFSPDGARLLTT 315

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 66  LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
           LAW  +H S +      G + +++  +      I+ +      +    +NP   + F  S
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 183
Query: 126 SWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           S + T +L    +   +R F         +C  + + + R   V     G+  L   D +
Sbjct: 184 SMEGTTRLQDF-KGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK 241
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
           E+ +  +   H+ ++     N   D  +A+ASVD+++KIWD+R  R   + L    H + 
Sbjct: 242 ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 239 VRKVKFSPHRRNLLAS 254
           V    FSP    LL +
Sbjct: 299 VNAACFSPDGARLLTT 314

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 66  LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
           LAW  +H S +      G + +++  +      I+ +      +    +NP   + F  S
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 183
Query: 126 SWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
           S + T +L    +   +R F         +C  + + + R   V     G+  L   D +
Sbjct: 184 SMEGTTRLQDF-KGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK 241
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
           E+ +  +   H+ ++     N   D  +A+ASVD+++KIWD+R  R   + L    H + 
Sbjct: 242 ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 239 VRKVKFSPHRRNLLAS 254
           V    FSP    LL +
Sbjct: 299 VNAACFSPDGARLLTT 314

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
           GHG A+ ++KF P   NLL S S D  + LW+   +   A+ G  + H +  +  D  +L
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 292 VEGLLASTGWDELVYVWQ 309
            E ++ S G D  + +W+
Sbjct: 209 GEKIM-SCGMDHSLKLWR 225

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
           GHG A+ ++KF P   NLL S S D  + LW+   +   A+ G  + H +  +  D  +L
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 292 VEGLLASTGWDELVYVWQ 309
            E ++ S G D  + +W+
Sbjct: 172 GEKIM-SCGMDHSLKLWR 188

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
           GHG A+ ++KF P   NLL S S D  + LW+   +   A+ G  + H +  +  D  +L
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 292 VEGLLASTGWDELVYVWQ 309
            E ++ S G D  + +W+
Sbjct: 173 GEKIM-SCGMDHSLKLWR 189

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
           GHG A+ ++KF P   NLL S S D  + LW+   +   A+ G  + H +  +  D  +L
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 292 VEGLLASTGWDELVYVWQ 309
            E ++ S G D  + +W+
Sbjct: 168 GEKIM-SCGMDHSLKLWR 184

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
           GHG A+ ++KF P   NLL S S D  + LW+   +   A+ G  + H +  +  D  +L
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 292 VEGLLASTGWDELVYVWQ 309
            E ++ S G D  + +W+
Sbjct: 172 GEKIM-SCGMDHSLKLWR 188

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 25/221 (11%)
Query: 63  VYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRD 120
           V  +AWS  +D   +A  + D SV I++T         I  L EH+++V    ++P+   
Sbjct: 110 VKGVAWS--NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA- 166
Query: 121 SFITSSWDDTVKLWT--VDRPTSVRTFKEHAYCVYNATWNPRHSDVF--CSASGDCTLRI 176
              +SS+DDTV++W    D    V     H   V+++ ++     VF  CS S D T+R+
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-VFRLCSGSDDSTVRV 225
Query: 177 W--------DVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN--Y 225
           W        D +E     I+P  H+ ++    W    + LIAS   D  + +++  +  +
Sbjct: 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGEW 283
Query: 226 RVPIAVLNGHG-YAVRKVKF-SPHRRNLLASCSYDMTVCLW 264
           +V       HG Y +  VK+   + + +LA+   D  V  W
Sbjct: 284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 128 DDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
           D++V LW+      ++  +  +    + +  W  +  +     +    +++WDV++    
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRL 193
Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
             + +H   + +  WN Y   +++S S    I   DVR     +A L+GH   V  ++++
Sbjct: 194 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 246 PHRRNLLASCSYDMTVCLW 264
           P  R+ LAS   D  V +W
Sbjct: 251 PDGRH-LASGGNDNLVNVW 268

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 128 DDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
           D++V LW+      ++  +  +    + +  W  +  +     +    +++WDV++    
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRL 182
Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
             + +H   + +  WN Y   +++S S    I   DVR     +A L+GH   V  ++++
Sbjct: 183 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 246 PHRRNLLASCSYDMTVCLW 264
           P  R+ LAS   D  V +W
Sbjct: 240 PDGRH-LASGGNDNLVNVW 257

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 128 DDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
           D++V LW+      ++  +  +    + +  W  +  +     +    +++WDV++    
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRL 102
Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
             + +H   + +  WN Y   +++S S    I   DVR     +A L+GH   V  ++++
Sbjct: 103 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 246 PHRRNLLASCSYDMTVCLW 264
           P  R+ LAS   D  V +W
Sbjct: 160 PDGRH-LASGGNDNLVNVW 177

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 116 PTRRDSF-ITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC 172
           PT   +F I  SW + V+ W V     T  +  + H   V +  W+   S VF +AS D 
Sbjct: 50  PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDK 108
Query: 173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDD-CLIASASVDKSIKIWDVRNYRVPIAV 231
           T ++WD+      + I  H+  +    W K  +   + + S DK++K WD R+   P+ V
Sbjct: 109 TAKMWDLSS-NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMV 166
Query: 232 LN 233
           L 
Sbjct: 167 LQ 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	1e-79
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	8e-39
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-38
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	7e-28
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	1e-18
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-10
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	5e-05
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-44
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	6e-42
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-35
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	7e-31
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-29
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-21
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-20
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-17
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	8e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-40
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-36
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-28
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-25
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-24
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-20
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-13
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	7e-08
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-38
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-33
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-32
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-29
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-29
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-18
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-38
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	3e-32
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-31
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	8e-23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-38
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-37
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	7e-20
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-38
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-33
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	6e-33
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-26
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	4e-37
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-33
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	7e-29
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	7e-23
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-17
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	8e-37
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	6e-36
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-26
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-25
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-19
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-18
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-13
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	8e-37
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	9e-34
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-29
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-29
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-28
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-27
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-24
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-17
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-13
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-36
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-36
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-29
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-16
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-36
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-33
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	6e-26
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	6e-20
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-36
3jrp_A	379	Fusion protein of protein transport protein SEC13	7e-24
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-23
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-20
2pm7_B	297	Protein transport protein SEC13, protein transport	4e-36
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-20
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	7e-36
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	5e-31
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-14
3ow8_A	321	WD repeat-containing protein 61; structural genomi	9e-36
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-35
3ow8_A	321	WD repeat-containing protein 61; structural genomi	7e-35
3ow8_A	321	WD repeat-containing protein 61; structural genomi	7e-30
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-24
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-34
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-31
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-21
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-10
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-35
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-30
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	4e-25
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-19
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-35
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-20
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-04
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	6e-35
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	1e-33
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-33
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-20
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	4e-08
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-34
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-24
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	7e-24
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-21
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-06
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-34
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-29
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-28
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-22
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	6e-16
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-34
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-33
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-22
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-21
3jro_A	753	Fusion protein of protein transport protein SEC13	4e-34
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-23
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-22
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-34
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-26
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	1e-17
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-33
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	6e-31
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-22
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-10
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	3e-07
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	4e-33
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	6e-28
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	5e-25
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	6e-23
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	6e-33
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-32
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-25
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-15
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-32
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-25
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-25
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	4e-24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	6e-32
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-26
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-23
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-21
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-31
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-28
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	6e-23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	8e-23
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-31
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-30
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-27
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-23
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	6e-19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	3e-14
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-31
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	8e-30
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-26
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-24
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-16
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	8e-31
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-27
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	3e-20
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	9e-31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-29
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	5e-25
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	9e-31
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	8e-28
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-22
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	5e-20
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-15
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	8e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-30
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-27
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-21
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-14
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	5e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-30
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-22
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	6e-21
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-20
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-30
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-25
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-24
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	5e-30
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	5e-26
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-25
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	8e-25
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-27
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	7e-25
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-24
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	8e-12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-11
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-27
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	1e-25
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-18
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-26
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-26
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-13
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-26
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-26
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-25
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-24
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-24
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-14
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-25
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	7e-18
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-17
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-22
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	6e-22
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-19
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-07
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-20
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-19
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	6e-10
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-18
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	6e-17
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	7e-11
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-05
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-17
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	4e-11
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-10
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	5e-08
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-15
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-12
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-10
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	2e-07
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	5e-12
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	9e-06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	9e-06
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	1e-04

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  247 bits (632), Expect = 1e-79
 Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 30/279 (10%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP-------TANPIRSLHEHTREVHSAD 113
             V    +   +  ++        V ++D    P          P   L  H +E +   
Sbjct: 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188

Query: 114 YNPTRRDSFITSSWDDTVKLWTVDR-------PTSVRTFKEHAYCVYNATWNPRHSDVFC 166
           +NP      +++S D T+ LW ++          +   F  H   V +  W+  H  +F 
Sbjct: 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248

Query: 167 SASGDCTLRIWDVREMGST---MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
           S + D  L IWD R   ++     + AH  E+    +N Y + ++A+ S DK++ +WD+R
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308

Query: 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA------------ 271
           N ++ +     H   + +V++SPH   +LAS   D  + +WD                  
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368

Query: 272 -LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
            L+  +  HT        +     ++ S   D ++ VWQ
Sbjct: 369 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  141 bits (356), Expect = 8e-39
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 26/234 (11%)

Query: 9   NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT----ADGVY 64
            GY + ++P     L  A+        +  + + D++        + A +        V 
Sbjct: 183 EGYGLSWNPNLNGYLLSAS-------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235

Query: 65  DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFIT 124
           D+AW   H+SL  +   D  + I+DT    T+ P  ++  HT EV+   +NP       T
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295

Query: 125 SSWDDTVKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183
            S D TV LW +      + +F+ H   ++   W+P +  +  S+  D  L +WD+ ++G
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355

Query: 184 ST--------------MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
                            I   H  +I    WN  +  +I S S D  +++W + 
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  139 bits (353), Expect = 2e-38
 Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 19/229 (8%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS----------VRTFKEH 148
           I     H  EV+ A Y P       T +    V ++   +  S              + H
Sbjct: 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 180

Query: 149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILACDWN 201
               Y  +WNP  +    SAS D T+ +WD+       R + +  I   H   +    W+
Sbjct: 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240

Query: 202 KYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259
              + L  S + D+ + IWD RN     P   ++ H   V  + F+P+   +LA+ S D 
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300

Query: 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           TV LWD       +  ++ H +    V  S   E +LAS+G D  ++VW
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  110 bits (278), Expect = 7e-28
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%)

Query: 115 NPTRRDSFITSSWDDTVKLWTVD----RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG 170
            P+    F  S +D+    +           +     H   V  A + P+++ V  + + 
Sbjct: 90  LPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTP 149

Query: 171 DCTLRIWDVREMGSTMIIPA----------HEFEILACDWNKYDDCLIASASVDKSIKIW 220
              + ++D  +  S                H+ E     WN   +  + SAS D +I +W
Sbjct: 150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209

Query: 221 DVRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--AL 272
           D+              +  GH   V  V +     +L  S + D  + +WD    +    
Sbjct: 210 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269

Query: 273 VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
               D HT     +  +   E +LA+   D+ V +W
Sbjct: 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 31/212 (14%)

Query: 5   KTPFNG-----YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT 59
           K  F G       V +   +ES              + ++ + D      +         
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVA-------DDQKLMIWDTRNNNTSKPSHTVDAH 276

Query: 60  ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
              V  L+++   + +L    AD +V ++D         + S   H  E+    ++P   
Sbjct: 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNE 334

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKE--------------HAYCVYNATWNPRHSDVF 165
               +S  D  + +W + +    ++ ++              H   + + +WNP    + 
Sbjct: 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394

Query: 166 CSASGDCTLRIWDVRE---MGSTMIIPAHEFE 194
           CS S D  +++W + E         IPA E E
Sbjct: 395 CSVSEDNIMQVWQMAENVYNDEEPEIPASELE 426

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-----MV 268
                 +     ++ I +   H   V + ++ P    ++A+ +    V ++D+       
Sbjct: 106 KGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP 165

Query: 269 EDALVGRYDH----HTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
           E +   + D     H +   G+  +  + G L S   D  + +W 
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD 210

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 20/114 (17%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA---------- 60
           + V++SP  E+ LA +           R+HV DLS      +   A D            
Sbjct: 325 FQVQWSPHNETILASSGTDR-------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377

Query: 61  -DGVYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTANPIRSLHEHTREVHSA 112
              + D +W+  ++  +I +V+ D  ++++  A     +    +     E ++A
Sbjct: 378 TAKISDFSWN-PNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNTA 430

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  155 bits (395), Expect = 1e-44
 Identities = 57/279 (20%), Positives = 108/279 (38%), Gaps = 24/279 (8%)

Query: 51  LTELVAFDTADGVYDLAWSESHDSLLIA-AVADGSVKIYDTA-LPPTANPIRSLHEHTRE 108
              + +        DL W  SH++ +IA A+ +GS+++Y T       N +     H+  
Sbjct: 58  EKPIASLQVDSKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS 115

Query: 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR---------TFKEHAYCVYNATWNP 159
           V +  +N  + +   +   +  + +W +++ T                    V +  WN 
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175

Query: 160 RHSDVFCSASGDCTLRIWDVR------EMGSTMIIPAHEFEILACDWNKYDDCLIASAS- 212
             + VF SA       IWD++       +  T      + ++   +W+  +   +A+A+ 
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235

Query: 213 --VDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269
              D SI IWD+RN   P+  LN GH   +  + +     +LL S   D TV LW+    
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN-PES 294

Query: 270 DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
              + ++     +      +     L A   +D  + V 
Sbjct: 295 AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQ 333

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  149 bits (377), Expect = 6e-42
 Identities = 52/273 (19%), Positives = 105/273 (38%), Gaps = 27/273 (9%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-ADGVYDLAWS 69
             + +S      +A A       L NG + +   + A  A+  +  F   +  V  + ++
Sbjct: 71  NDLDWSHN-NKIIAGA-------LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122

Query: 70  ESHDSLLIAAVADGSVKIYDTA------LPPTANPIRSLHEHTREVHSADYNPTRRDSFI 123
              D++L +   +G + I+D           T            EV S  +N +    F 
Sbjct: 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182

Query: 124 TSSWDDTVKLWTVDRPTSVRTFKE------HAYCVYNATWNPRHSDVFCSASG---DCTL 174
           ++   +   +W +     V               +    W+P++S    +A+G   D ++
Sbjct: 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242

Query: 175 RIWDVREMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232
            IWD+R   + +      H+  IL+ DW   D+ L+ S+  D ++ +W+  +    ++  
Sbjct: 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQF 301

Query: 233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              G    K KF+P   +L A  S+D  + +  
Sbjct: 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  131 bits (331), Expect = 2e-35
 Identities = 45/271 (16%), Positives = 106/271 (39%), Gaps = 27/271 (9%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
                ++ +      + A    D S++++      +  PI S  +   + +  D++   +
Sbjct: 24  KIPLLVSGT--VSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK 80

Query: 120 DSFITSSWDDTVKLWTVD----RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
                +  + +++L++ +       S+  F  H+  V    +N +  +V  S   +  + 
Sbjct: 81  -IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139

Query: 176 IWDVREMGSTMIIP---------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
           IWD+ +   +             +   E+++  WN+    + ASA       IWD++  +
Sbjct: 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK 199

Query: 227 VPIAV-----LNGHGYAVRKVKFSPHRRNLLASCS---YDMTVCLWDFMVEDALVGRYDH 278
             I +      +G    +  V++ P     +A+ +    D ++ +WD    +  +   + 
Sbjct: 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ 259

Query: 279 -HTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
            H +  + +D     E LL S+G D  V +W
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  119 bits (300), Expect = 7e-31
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP-RHSDVFCSASGDCTLRIWDVREMGS 184
           +    VKL    R  +      H       +       D   + S D +L +W +    S
Sbjct: 2   AMGSMVKLAEFSRTATFAW--SHDKIPLLVSGTVSGTVDA--NFSTDSSLELWSLLAADS 57

Query: 185 TMIIPAHEFE--ILACDWNKYDDCLIASASVDKSIKIWDV---RNYRVPIAVLNGHGYAV 239
              I + + +      DW+  ++ +IA A  + S++++      N    +A  + H  +V
Sbjct: 58  EKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDF--------MVEDALVGRYDHHTEFAVGVDMSVL 291
           + VKF+  + N+LAS   +  + +WD                G+     +  + +  +  
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS 176

Query: 292 VEGLLASTGWDELVYVW 308
           +  + AS G      +W
Sbjct: 177 LAHVFASAGSSNFASIW 193

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  115 bits (289), Expect = 2e-29
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 23/200 (11%)

Query: 81  ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT-RRDSFITSSWDDTVKLWTVDRP 139
               VK+ +     TA    S   H +         +   D     S D +++LW++   
Sbjct: 3   MGSMVKLAE--FSRTATFAWS---HDKIPLLVSGTVSGTVD--ANFSTDSSLELWSLLAA 55

Query: 140 TSVRTFKEHA--YCVYNATWNPRHSDVFCSASGDCTLRIWDV----REMGSTMIIPAHEF 193
            S +            +  W+  ++ +   A  + +L ++        + S      H  
Sbjct: 56  DSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114

Query: 194 EILACDWNKYDDCLIASASVDKSIKIWDVRN--------YRVPIAVLNGHGYAVRKVKFS 245
            +    +N   D ++AS   +  I IWD+            +           V  + ++
Sbjct: 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN 174

Query: 246 PHRRNLLASCSYDMTVCLWD 265
               ++ AS        +WD
Sbjct: 175 QSLAHVFASAGSSNFASIWD 194

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 37/228 (16%), Positives = 83/228 (36%), Gaps = 21/228 (9%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA------DGVY 64
            +VKF+   ++ LA           NG + + D++    + +              D V 
Sbjct: 117 KTVKFNAKQDNVLASGGN-------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169

Query: 65  DLAWSESHDSLLIAAVADGSVKIYDTA---LPPTANPIRSLHEHTREVHSADYNPTRRDS 121
            LAW++S   +  +A +     I+D          +         +++   +++P     
Sbjct: 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229

Query: 122 FITSSWDD---TVKLWTVDRPTS-VRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRI 176
             T++  D   ++ +W +    + ++T  + H   + +  W  +   +  S+  D T+ +
Sbjct: 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289

Query: 177 WDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
           W+          PA         +      L A AS D  I++  ++N
Sbjct: 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 88.9 bits (221), Expect = 4e-20
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 37/221 (16%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG----VYDL 66
            S+ ++       A A +       +    + DL      +  L       G    +  +
Sbjct: 169 ISLAWNQSLAHVFASAGS-------SNFASIWDLKAKKEVIH-LSYTSPNSGIKQQLSVV 220

Query: 67  AWSESHDSLLIAA---VADGSVKIYDTALPPTAN-PIRSLHE-HTREVHSADYNPTRRDS 121
            W   + + +  A     D S+ I+D      AN P+++L++ H + + S D+       
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLR---NANTPLQTLNQGHQKGILSLDWCHQDEHL 277

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            ++S  D+TV LW  +    +  F       +   + P   D+F  AS D  + +  ++ 
Sbjct: 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337

Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
           + +T+                 D+    +   +     W+ 
Sbjct: 338 LTNTL-----------------DEQETETKQQESETDFWNN 361

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 10/146 (6%)

Query: 168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227
            +    +++ +     +     +H+   L          + A+ S D S+++W +     
Sbjct: 1   GAMGSMVKLAEFSR--TATFAWSHDKIPLLVSGT-VSGTVDANFSTDSSLELWSL-LAAD 56

Query: 228 PIAVLNGHG--YAVRKVKFSPHRRNLLASCSYDMTVCLWDF---MVEDALVGRYDHHTEF 282
               +           + +S + + ++A    + ++ L+           + R+ +H+  
Sbjct: 57  SEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFSNHSSS 115

Query: 283 AVGVDMSVLVEGLLASTGWDELVYVW 308
              V  +   + +LAS G +  +++W
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIW 141

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270
            ++   +K+ +             H      V  +     + A+ S D ++ LW  +  D
Sbjct: 1   GAMGSMVKLAEFSR---TATFAWSHDKIPLLVSGTVSGT-VDANFSTDSSLELWSLLAAD 56

Query: 271 AL--VGRYDHHTEF---AVGVDMSVLVEGLLASTGWDELVYVWQ 309
           +   +      ++F       +       ++A    +  + ++ 
Sbjct: 57  SEKPIASLQVDSKFNDLDWSHN-----NKIIAGALDNGSLELYS 95

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  148 bits (375), Expect = 2e-40
 Identities = 45/268 (16%), Positives = 92/268 (34%), Gaps = 27/268 (10%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             +      +S     +    DGSV  Y       +   R+ H+    V   +++P   +
Sbjct: 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 220

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLRIWD 178
             IT   D  +  +       ++  ++    V    +     D   F +   D T+R+WD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280

Query: 179 V--REMGSTMIIPAHEFEI--LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
           V   +      +   +     +        +  I S S+D ++  +++ +    +  ++G
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDE-VLKTISG 337

Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG 294
           H   +  +  +P     L S SYD  +  W           +  H+   V +D S     
Sbjct: 338 HNKGITALTVNP-----LISGSYDGRIMEWS------SSSMHQDHSNLIVSLDNS--KAQ 384

Query: 295 LLASTGWDELVYVW-----QQGMDPRAV 317
             +S  WD+ + V      + G  P+  
Sbjct: 385 EYSSISWDDTLKVNGITKHEFGSQPKVA 412

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  137 bits (347), Expect = 2e-36
 Identities = 49/312 (15%), Positives = 110/312 (35%), Gaps = 31/312 (9%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-----ADGVYD 65
            +VKFSP   S+  + +        +G+V V   +    + +  V   +     A  + D
Sbjct: 68  TTVKFSPIKGSQY-LCSGDE-----SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 121

Query: 66  LAWSESHDSLLIAAV---ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
           ++W    +   +  V    D            + N +  +  H++ +++     +R    
Sbjct: 122 ISWD--FEGRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQRINACHLKQSRPMRS 176

Query: 123 ITSSWDDTVKLWTVD---RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
           +T   D +V  +         S RT  +    V +  ++P   +   +   D  +  +D 
Sbjct: 177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236

Query: 180 REMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHG 236
           +       I   +  +    +  +  D    A+   D +I++WDV   + V    L+   
Sbjct: 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296

Query: 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL 296
              ++V         + S S D T+  ++ +  D ++     H +    + ++      L
Sbjct: 297 LGNQQVGVVATGNGRIISLSLDGTLNFYE-LGHDEVLKTISGHNKGITALTVNP-----L 350

Query: 297 ASTGWDELVYVW 308
            S  +D  +  W
Sbjct: 351 ISGSYDGRIMEW 362

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  114 bits (288), Expect = 1e-28
 Identities = 30/258 (11%), Positives = 80/258 (31%), Gaps = 30/258 (11%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           + +  L  S+       +   D ++K+             + HE   +   A  N     
Sbjct: 373 NLIVSLDNSK--AQEYSSISWDDTLKVNGI----------TKHEFGSQPKVASANNDGF- 419

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
                + DD + +        +++ +        + + N     +    +     ++ D+
Sbjct: 420 -TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL-EEGNTIQVFKLSDL 477

Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
               S  +      +      +   +  IA+  V   I ++D+++  V  +        +
Sbjct: 478 E--VSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 534

Query: 240 RKVKFSPHRRN---------LLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290
             + + P  +          L+A+ S D  + ++       ++   + H +    +    
Sbjct: 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 594

Query: 291 LVEGLLASTGWDELVYVW 308
                L S+G D  +  W
Sbjct: 595 --PSTLVSSGADACIKRW 610

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  104 bits (261), Expect = 5e-25
 Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 22/207 (10%)

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDD 129
           ++D        D  + I  +    T + I+S+         S   N          +   
Sbjct: 415 NNDGFTAVLTNDDDLLILQSF---TGDIIKSVRLNSPGSAVSLSQNYVAV-GLEEGNTIQ 470

Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
             KL  ++    ++T           + +P       +      + ++D+ +        
Sbjct: 471 VFKLSDLEVSFDLKT--PLRAKPSYISISP-SETYIAAGDVMGKILLYDL-QSREVKTSR 526

Query: 190 --AHEFEILACDWN---------KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
                 +I A  W          + ++ L+A+ S+D +I I+ V+     I  LN H   
Sbjct: 527 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 586

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWD 265
           V  + +       L S   D  +  W+
Sbjct: 587 VNNLLWETPST--LVSSGADACIKRWN 611

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  101 bits (255), Expect = 3e-24
 Identities = 37/258 (14%), Positives = 82/258 (31%), Gaps = 39/258 (15%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
            G+  L  +      LI+   DG +  + ++            +H+  + S D +  +  
Sbjct: 340 KGITALTVNP-----LISGSYDGRIMEWSSS--------SMHQDHSNLIVSLDNSKAQE- 385

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
            + + SWDDT+K+  +       T  E       A+ N          + D  L I    
Sbjct: 386 -YSSISWDDTLKVNGI-------TKHEFGSQPKVASANN--DGFTAVLTNDDDLLILQSF 435

Query: 181 EMGSTMIIPAH-EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
                  +  +     ++   N Y    +   +  +  K+ D+        +        
Sbjct: 436 TGDIIKSVRLNSPGSAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSF---DLKTPLRAKP 491

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV---------DMSV 290
             +  SP     +A+      + L+D    +    R+   T     +         +   
Sbjct: 492 SYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550

Query: 291 LVEGLLASTGWDELVYVW 308
           + E L+A+   D  ++++
Sbjct: 551 IEEDLVATGSLDTNIFIY 568

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 89.2 bits (222), Expect = 6e-20
 Identities = 27/222 (12%), Positives = 51/222 (22%), Gaps = 22/222 (9%)

Query: 105 HTREVHSADYNPTRRDSFITSSWDD-TVKLWTVD--RPTSVRTFKEHAYCVYNA-TWNPR 160
                    Y+PT   +          V+       +   V  F  H   V     ++P 
Sbjct: 17  QRNFTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75

Query: 161 HS-DVFCSASGDCTLRIWDVR--------EMGSTMIIPAHEFEILACDW---NKYDDCLI 208
                 CS      + +W           E+            I    W    +     +
Sbjct: 76  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR--LCV 133

Query: 209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268
                D         +    +  ++GH   +        R     +   D +V  +    
Sbjct: 134 VGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192

Query: 269 EDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
                    H     F   V+ S      + + G D  +  +
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 21/181 (11%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 57  FDTADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115
            ++      L+ +  + ++ +         K+ D      +  +++             +
Sbjct: 445 LNSPGSAVSLSQN--YVAVGLEEGNTIQVFKLSDLE---VSFDLKTPLRAK--PSYISIS 497

Query: 116 PTRRDS--FITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPRHSDVFC------ 166
           P                + L+ +       + +      +   +W P             
Sbjct: 498 P---SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554

Query: 167 ---SASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
              + S D  + I+ V +    +I    AH+  +    W       + S+  D  IK W+
Sbjct: 555 LVATGSLDTNIFIYSV-KRPMKIIKALNAHKDGVNNLLWE--TPSTLVSSGADACIKRWN 611

Query: 222 V 222
           V
Sbjct: 612 V 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 25/144 (17%)

Query: 5   KTPFNG--YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG 62
           KTP       +  SP  E+ +A            G++ + DL       +          
Sbjct: 484 KTPLRAKPSYISISPS-ETYIAAGDV-------MGKILLYDLQSREVKTSRWAFRT--SK 533

Query: 63  VYDLAWS--------ESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSAD 113
           +  ++W         E  +  L+A    D ++ IY    P     I++L+ H   V++  
Sbjct: 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLL 591

Query: 114 YNPTRRDSFITSSWDDTVKLWTVD 137
           +        ++S  D  +K W V 
Sbjct: 592 WETPST--LVSSGADACIKRWNVV 613

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  126 bits (318), Expect = 1e-33
 Identities = 6/173 (3%), Positives = 25/173 (14%), Gaps = 10/173 (5%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN 158
              +               +           T  ++ ++   +    +  A  +      
Sbjct: 18  DIQMMLAADVHLGTKNCDFQM--ERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENP 75

Query: 159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
                V  +        +   +  G+  I   H                     +     
Sbjct: 76  Q-DIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQT-SFSEPRLLILTDPRT 133

Query: 219 IWDVRN------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                                        +    + +   +       +    
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMV 186

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  114 bits (287), Expect = 3e-29
 Identities = 10/217 (4%), Positives = 34/217 (15%), Gaps = 20/217 (9%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D             +        +  IY             L    R + + +       
Sbjct: 26  DVHLGTKNC--DFQMERYVYKRRTDGIYIIN---LGKTWEKLQLAARVIVAIENPQDII- 79

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
                 +     L       +      H    +                           
Sbjct: 80  VQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQT-SFSEPRLLILTDPRTDHQP- 137

Query: 181 EMGSTMIIPA--------HEFEILACDWNKYDDCLIASASVDKSIKIWDVRN----YRVP 228
              S +                 +       +    +   +   +    ++         
Sbjct: 138 IKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGH 197

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              +    +  R  + +  +    A+        + +
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAE 234

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  138 bits (351), Expect = 1e-38
 Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           + V  +AW+      L+A    D SV +++         +  L+ HT++V    ++P++ 
Sbjct: 106 NEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163

Query: 120 DSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
               ++S+DDTVKL+  +        T + H   V++  ++P       S S D T+RIW
Sbjct: 164 -LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIW 221

Query: 178 DVREMGSTMIIPA----------------HEFEILACDWNKYDDCLIASASVDKSIKIWD 221
                G+   +                  H   I    W +     +A+A  D +I+++ 
Sbjct: 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQ 280

Query: 222 VR--------NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                      + +   +   H   V  V ++P    LLASCS D  V  W 
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  121 bits (306), Expect = 3e-32
 Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 36/278 (12%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  +AWS       +A A  D +  I+          + +L  H  EV S  + P+  
Sbjct: 62  RTVRKVAWS--PCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWAPSGN 118

Query: 120 DSFITSSWDDTVKLW---TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
               T S D +V +W     D    V     H   V +  W+P   ++  SAS D T+++
Sbjct: 119 -LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKL 176

Query: 177 WDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP------ 228
           +     +      +  HE  + +  ++      +AS S D++++IW              
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235

Query: 229 --------IAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH- 278
                   I  L+G H   +  + +       LA+   D  + ++               
Sbjct: 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSL 294

Query: 279 -------HTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
                  H++    V  +    GLLAS   D  V  W+
Sbjct: 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  120 bits (303), Expect = 1e-31
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 95  TANPIRSLHEHTR-EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR---TFKEHAY 150
           +   +  +  H         +NP       +   D  +++W  +  + +      + H  
Sbjct: 4   SLVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR 62

Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVR--EMGSTMIIPAHEFEILACDWNKYDDCLI 208
            V    W+P   +   SAS D T  IW     +      +  HE E+ +  W      L+
Sbjct: 63  TVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLL 120

Query: 209 ASASVDKSIKIWDV--RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           A+ S DKS+ +W+V   +    ++VLN H   V+ V + P +  LLAS SYD TV L+ 
Sbjct: 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYR 178

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 95.7 bits (239), Expect = 8e-23
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 34/202 (16%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W       L+A A  D +VK+Y            +L  H   V S  ++P+ +
Sbjct: 151 QDVKHVVWH--PSQELLASASYDDTVKLYREE-EDDWVCCATLEGHESTVWSLAFDPSGQ 207

Query: 120 DSFITSSWDDTVKLWTVDRP---------------TSVRTFK-EHAYCVYNATWNPRHSD 163
               + S D TV++W    P                 + T    H+  +Y+  W    + 
Sbjct: 208 -RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTG 265

Query: 164 VFCSASGDCTLRIWDVREMGSTMIIP----------AHEFEILACDWNKYDDCLIASASV 213
              +A GD  +R++   +  S    P          AH  ++    WN  +  L+AS S 
Sbjct: 266 ALATACGDDAIRVFQE-DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324

Query: 214 DKSIKIWDVRNYRVPIAVLNGH 235
           D  +  W  +     +   + H
Sbjct: 325 DGEVAFWKYQRPE-GLHHHHHH 345

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  144 bits (364), Expect = 1e-38
 Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 15/253 (5%)

Query: 61  DGVYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V    +        I   + D  +++++     T   +     H   + S   +PT+ 
Sbjct: 56  TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYN---TGEKVVDFEAHPDYIRSIAVHPTKP 110

Query: 120 DSFITSSWDDTVKLWTVD-RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
              ++ S D TVKLW  +      +TF+ H + V    +NP+    F S   D T+++W 
Sbjct: 111 -YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169

Query: 179 VREMGSTMIIPA--HEFEILACDWNKYDDC-LIASASVDKSIKIWDVRNYRVPIAVLNGH 235
           +    +         E  +   D+    D   + +AS D +IKIWD +     +A L GH
Sbjct: 170 L-GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGH 227

Query: 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295
              V    F P    ++ S S D T+ +W+      +    +   E +  +         
Sbjct: 228 MSNVSFAVFHPTLP-IIISGSEDGTLKIWN-SSTYKVEKTLNVGLERSWCIATHPTGRKN 285

Query: 296 LASTGWDELVYVW 308
             ++G+D    V 
Sbjct: 286 YIASGFDNGFTVL 298

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  141 bits (357), Expect = 1e-37
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 4/211 (1%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN 158
            ++    +  V   D++PT     +T+ +   V++W  +    VR+ +     V    + 
Sbjct: 6   KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64

Query: 159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
            R  +     S D  +R+++       +   AH   I +   +      + S S D ++K
Sbjct: 65  AR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVK 122

Query: 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH 278
           +W+  N         GH + V  V F+P   +  AS   D TV +W              
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182

Query: 279 HTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
                  VD   L +   + +   D  + +W
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 89.0 bits (221), Expect = 7e-20
 Identities = 31/249 (12%), Positives = 72/249 (28%), Gaps = 32/249 (12%)

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
                +I     DG++KI++++   T    ++L+           +PT R ++I S +D+
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSS---TYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293

Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
              + ++       +       V++        +   S      +R  +  E    + + 
Sbjct: 294 GFTVLSLGNDEPTLSLDPVGKLVWS-----GGKNAAASDIFTAVIRGNEEVEQDEPLSLQ 348

Query: 190 -----AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244
                + +    +   +  +   +     D    I+        +A  N      +   +
Sbjct: 349 TKELGSVDVFPQSLAHS-PNGRFVTVVG-DGEYVIYTA------LAWRNKAFGKCQDFVW 400

Query: 245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDEL 304
                N  A       +  +    E              +   +  L  G L     D  
Sbjct: 401 G-PDSNSYALIDETGQIKYYKNFKEVTSWS-------VPMHSAIDRLFSGALLGVKSDGF 452

Query: 305 VYVW--QQG 311
           VY +    G
Sbjct: 453 VYFFDWDNG 461

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/187 (13%), Positives = 44/187 (23%), Gaps = 43/187 (22%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
               D  W    DS   A +   G +K Y                      S   +    
Sbjct: 393 GKCQDFVWG--PDSNSYALIDETGQIKYYKNF-------------KEVTSWSVPMHSAID 437

Query: 120 DSF----ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
             F    +    D  V  +  D  T VR    +A  V    W+     V    + +    
Sbjct: 438 RLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVI---WSDNGELV-MIVNTNSNGD 493

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCL-----IASASVDKSIKIWDVRNYRVPIA 230
                               L  + + Y +         S  VD++  +    +  +   
Sbjct: 494 EAS--------------GYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSG 539

Query: 231 VLNGHGY 237
              G  +
Sbjct: 540 KWVGDVF 546

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  138 bits (350), Expect = 3e-38
 Identities = 30/210 (14%), Positives = 62/210 (29%), Gaps = 7/210 (3%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             V  L W  +H + +      G + ++D                   +    +N    +
Sbjct: 74  RRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTN 132

Query: 121 SFITSSWDDTVKLWTVDRPTS--VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
               SS      L                  Y       +     +  +      L +  
Sbjct: 133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLG 191

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHG 236
           +           H+ ++   ++N   D L+A++SVD ++K+WD+RN +          H 
Sbjct: 192 LDG-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE 250

Query: 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
             V    F+P     L +      + ++  
Sbjct: 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  124 bits (314), Expect = 4e-33
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 9/220 (4%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCV 152
           +    R+     R V S +++PT   +    S    + LW  D    TS          +
Sbjct: 62  SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAI 121

Query: 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFEILACDWNKYDDCLIAS 210
               +N  +++    +S      + D       +       ++     D +     ++A+
Sbjct: 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS-VSRQMLAT 180

Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF--MV 268
                 + +  +  +   I     H   V   +F+P    L+A+ S D TV LWD   + 
Sbjct: 181 GDSTGRLLLLGLDGH--EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238

Query: 269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           +         H +       +      L +T     + V+
Sbjct: 239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  124 bits (313), Expect = 6e-33
 Identities = 46/321 (14%), Positives = 109/321 (33%), Gaps = 40/321 (12%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
            S+++ P + + +AV +         G + + D          +      D +  + +++
Sbjct: 77  TSLEWHPTHPTTVAVGS-------KGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQ 128

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT 130
            + + L  +   G+  + D +                     D + +R+    T      
Sbjct: 129 FNTNQLFVSSIRGATTLRDFS-GSVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGR 186

Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR---EMGSTMI 187
           + L  +     +   K H   V +A +NPR   +  ++S D T+++WD+R   +  S + 
Sbjct: 187 LLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL-----NGHGYAVRKV 242
              HE  + A  +N  D   + +      I+++   ++  P  ++             K 
Sbjct: 246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA 305

Query: 243 KFSPHRRNLLASCSY---------DMTVCLWDFMVEDALVGRYDHHTEFAVGV-----DM 288
            + P   +L+ +  Y           T+ ++D      +    D +    + +       
Sbjct: 306 TWHPM-YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364

Query: 289 SVLVEGLLASTGWDELVYVWQ 309
            VL       +G    + +W 
Sbjct: 365 DVLA------SGMGFNILIWN 379

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  107 bits (269), Expect = 1e-26
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
           +              + ++      RT       V +  W+P H       S    + +W
Sbjct: 42  QSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW 101

Query: 178 DVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDV-RNYRVPIAVLNG 234
           D      T  I        I    +N+++   +  +S+  +  + D   +     A  + 
Sbjct: 102 DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161

Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG 294
             Y    V  S  R+ +LA+      + L    ++   + +   H       + +   + 
Sbjct: 162 WDYWYCCVDVSVSRQ-MLATGDSTGRLLLLG--LDGHEIFKEKLHKAKVTHAEFNPRCDW 218

Query: 295 LLASTGWDELVYVW 308
           L+A++  D  V +W
Sbjct: 219 LMATSSVDATVKLW 232

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/185 (12%), Positives = 57/185 (30%), Gaps = 24/185 (12%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGR-VHVLDLSPAAPALTELVAFDTADGVYDLAWS 69
              +F+P       +AT+           V + DL       + +        V    ++
Sbjct: 208 THAEFNP--RCDWLMATS------SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFN 259

Query: 70  ESHDSLLIAAVADGSVKIYDTA-LPPTANPIRSLHEHTREVH--SADYNPTRR------- 119
            +  + L+       +++Y +         I   H   + +    A ++P          
Sbjct: 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY 319

Query: 120 -DSFITSSWDDTVKLWTVDRPTSVRTFKEHAY--CVYNATWNPRHSDVFCSASGDCTLRI 176
            D  +  +   T+ ++  +    V   ++      +    ++P   DV  S      + I
Sbjct: 320 PDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT-GDVLASGM-GFNILI 377

Query: 177 WDVRE 181
           W+  +
Sbjct: 378 WNRED 382

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  136 bits (344), Expect = 4e-37
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 37/272 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           D V D+++   H   L+A   AD ++K++D         IR++H H   V S    P   
Sbjct: 151 DSVQDISFD--HSGKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVSIMPN-- 203

Query: 120 DSFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
              I S S D T+K+W V     V+TF  H   V     N     +  S S D T+R+W 
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWV 262

Query: 179 VREMGSTMIIPAHEFEILAC-------------------DWNKYDDCLIASASVDKSIKI 219
           V        +  H   +                        +      + S S DK+IK+
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322

Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDH 278
           WDV    + +  L GH   VR V F    +  + SC+ D T+ +WD   ++   +   + 
Sbjct: 323 WDVST-GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWD--YKNKRCMKTLNA 378

Query: 279 HTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
           H  F   +D         + +   D+ V VW+
Sbjct: 379 HEHFVTSLDFH--KTAPYVVTGSVDQTVKVWE 408

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  125 bits (317), Expect = 3e-33
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 81  ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140
                K +     P      +L  H   V    ++P      +++S D T+K+W  +   
Sbjct: 87  QKRDPKEWI----PRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGD 141

Query: 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW 200
             RT K H   V + +++     +  S S D T+++WD +       +  H+  + +   
Sbjct: 142 FERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200

Query: 201 NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
              +   I SAS DK+IK+W+V+     +    GH   VR V+ +     L+ASCS D T
Sbjct: 201 M-PNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQT 257

Query: 261 VCLWD 265
           V +W 
Sbjct: 258 VRVWV 262

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  113 bits (286), Expect = 7e-29
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 19/206 (9%)

Query: 110 HSADYNPTRRD--SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS 167
             +  N  + +  S          K W   RP        H   V    ++P    V  S
Sbjct: 68  LESKLNEAKEEFTSGGPLGQKRDPKEWIP-RPPEKYALSGHRSPVTRVIFHP-VFSVMVS 125

Query: 168 ASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
           AS D T+++WD  E G     +  H   +    ++     L+AS S D +IK+WD + + 
Sbjct: 126 ASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFE 183

Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVG 285
             I  ++GH + V  V   P+    + S S D T+ +W+  V+    V  +  H E    
Sbjct: 184 -CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWE--VQTGYCVKTFTGHRE---W 236

Query: 286 VDMSVLV--EG-LLASTGWDELVYVW 308
           V   V    +G L+AS   D+ V VW
Sbjct: 237 V-RMVRPNQDGTLIASCSNDQTVRVW 261

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 96.9 bits (242), Expect = 7e-23
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 31/185 (16%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP--- 116
           + V  +  +   D  LIA    D +V+++  A   T      L EH   V    + P   
Sbjct: 235 EWVRMVRPN--QDGTLIASCSNDQTVRVWVVA---TKECKAELREHRHVVECISWAPESS 289

Query: 117 ---------TRRDSF-------ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP- 159
                    +            ++ S D T+K+W V     + T   H   V    ++  
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349

Query: 160 -RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
            +      S + D TLR+WD +       + AHE  + + D++      + + SVD+++K
Sbjct: 350 GKF---ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH-KTAPYVVTGSVDQTVK 405

Query: 219 IWDVR 223
           +W+ R
Sbjct: 406 VWECR 410

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186
           W   ++L         +  +                            + W  R      
Sbjct: 55  WTSVIRLQKKVMELESKLNEAKEEFTSGG-----------PLGQKRDPKEWIPR-PPEKY 102

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246
            +  H   +    ++     ++ SAS D +IK+WD          L GH  +V+ + F  
Sbjct: 103 ALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDH 160

Query: 247 HRRNLLASCSYDMTVCLWDF 266
             + LLASCS DMT+ LWDF
Sbjct: 161 SGK-LLASCSADMTIKLWDF 179

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  133 bits (336), Expect = 8e-37
 Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 23/252 (9%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             +  + +    +  L+     D  +           +P+ +L  H   V S  +     
Sbjct: 60  GFLNSVCYD--SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD--- 114

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
              I+ SWD T K+W     + V   + H   V++A       + F +AS D T+++W  
Sbjct: 115 GVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172

Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
            ++  T     H   +        DD    S S D  IK+ D+      +    GH   V
Sbjct: 173 DKVIKT-FSGIHNDVVRHLAVV--DDGHFISCSNDGLIKLVDMHTGD-VLRTYEGHESFV 228

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTE--FAVGVDMSVLVEGLL 296
             +K  P+    + SC  D TV +W    E+ +L           ++V      +  G +
Sbjct: 229 YCIKLLPNGD--IVSCGEDRTVRIWS--KENGSLKQVITLPAISIWSV----DCMSNGDI 280

Query: 297 ASTGWDELVYVW 308
                D LV ++
Sbjct: 281 IVGSSDNLVRIF 292

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  130 bits (330), Expect = 6e-36
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 29/255 (11%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             V D+      DS + +   DG+V+++             ++     ++S  Y+    +
Sbjct: 19  QDVRDVVAV--DDSKVASVSRDGTVRLWSKD---DQWLGTVVYTGQGFLNSVCYDS---E 70

Query: 121 S--FITSSWDDTVK---LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
               +    D  +    L+       + T   H   V + ++      V  S S D T +
Sbjct: 71  KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAK 127

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG- 234
           +W    +   +   AH   +       + +    +AS DK+IK+W        I   +G 
Sbjct: 128 VWKEGSLVYNL--QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGI 182

Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVE 293
           H   VR +           SCS D  + L D  +    ++  Y+ H  F   +   +L  
Sbjct: 183 HNDVVRHLAVVDDGH--FISCSNDGLIKLVD--MHTGDVLRTYEGHESFVYCI--KLLPN 236

Query: 294 GLLASTGWDELVYVW 308
           G + S G D  V +W
Sbjct: 237 GDIVSCGEDRTVRIW 251

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  106 bits (266), Expect = 1e-26
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 18/206 (8%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             V  L++    D ++I+   D + K++        + + +L  H   V  A       +
Sbjct: 105 GNVCSLSFQ---DGVVISGSWDKTAKVWKEG-----SLVYNLQAHNASVWDAKVVSFSEN 156

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
            F+T+S D T+KLW       ++TF   H   V +          F S S D  +++ D+
Sbjct: 157 KFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVD--DGHFISCSNDGLIKLVDM 212

Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
                      HE  +         +  I S   D++++IW   N  +   V+     ++
Sbjct: 213 HTGDVLRTYEGHESFVYCIKLL--PNGDIVSCGEDRTVRIWSKENGSL-KQVITLPAISI 269

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWD 265
             V    +    +   S D  V ++ 
Sbjct: 270 WSVDCMSNGD--IIVGSSDNLVRIFS 293

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  101 bits (254), Expect = 5e-25
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 14/171 (8%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFI-TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW 157
             +L  H ++V          DS + + S D TV+LW+ D              + +  +
Sbjct: 11  SATLKGHDQDVRDVVAVD---DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY 67

Query: 158 NPRHSDVFCSASGDCTLR---IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214
           +    ++      D  +    ++          +  H+  + +  +   D  ++ S S D
Sbjct: 68  DS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWD 123

Query: 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           K+ K+W   +    +  L  H  +V   K      N   + S D T+ LW 
Sbjct: 124 KTAKVWKEGS---LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 17/183 (9%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRR 119
             V+D       ++  + A AD ++K++          I++    H   V          
Sbjct: 143 ASVWDAKVVSFSENKFLTASADKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH 197

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
             FI+ S D  +KL  +     +RT++ H   VY     P  +    S   D T+RIW  
Sbjct: 198 --FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP--NGDIVSCGEDRTVRIWSK 253

Query: 180 R--EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHG 236
               +     I      I + D     +  I   S D  ++I+     R      + G  
Sbjct: 254 ENGSLKQV--ITLPAISIWSVDCMS--NGDIIVGSSDNLVRIFSQEKSRWASEDEIKGEL 309

Query: 237 YAV 239
            + 
Sbjct: 310 RSG 312

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK---IWDVR 223
           S S D T+R+W   +     ++   +  + +  ++  +  L+     D  I    ++   
Sbjct: 34  SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATS 92

Query: 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA 283
               P+  L GH   V  + F      ++ S S+D T  +W    E +LV     H    
Sbjct: 93  G-EDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWK---EGSLVYNLQAHNASV 145

Query: 284 VGVDMSVLVEGLLASTGWDELVYVWQQG 311
               +    E    +   D+ + +WQ  
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQND 173

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV-- 261
           DD  +AS S D ++++W   +  +   V+      +  V +   +  LL     D  +  
Sbjct: 28  DDSKVASVSRDGTVRLWSKDDQWL-GTVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMING 85

Query: 262 -CLWDFMVEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 311
             L+    ED    L+G    H      +      +G++ S  WD+   VW++G
Sbjct: 86  VPLFATSGEDPLYTLIG----HQGNVCSLSFQ---DGVVISGSWDKTAKVWKEG 132

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  138 bits (349), Expect = 8e-37
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 18/216 (8%)

Query: 60  ADGVYDLAWSESHDSLLIAAVADGS---VKIYDTALPPTANPIRSLHEHTREVHSADYNP 116
           +  V D++W    +S  IAAV +G      ++      T     +L    R ++S D+ P
Sbjct: 103 SGPVKDISWD--SESKRIAAVGEGRERFGHVFLFD---TGTSNGNLTGQARAMNSVDFKP 157

Query: 117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
           +R    I+ S D+TV ++         TF EH   V++  +NP    +F S  GD T+ +
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVL 216

Query: 177 WDVRE-------MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI 229
           ++  +          ++   AH   +    W+  D   IASAS DK+IKIW+V   +V  
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEK 275

Query: 230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            +  G     +++     ++  L S S +  +   +
Sbjct: 276 TIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVN 310

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  129 bits (326), Expect = 9e-34
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 27/264 (10%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHE-------HTREVHSA 112
             V+ + ++   D  L A+   DG++ +Y+              +       H+  V   
Sbjct: 191 KFVHSVRYN--PDGSLFASTGGDGTIVLYNGV---DGTKTGVFEDDSLKNVAHSGSVFGL 245

Query: 113 DYNPTRRDS--FITSSWDDTVKLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSDVFCSAS 169
            ++P   D     ++S D T+K+W V      +T                       S S
Sbjct: 246 TWSP---DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSIS 301

Query: 170 GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI 229
            +  +   +        +   H   I A   +  D   + SA  +  I  WD+       
Sbjct: 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNR 360

Query: 230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV--EDALVGRYDHHTEFAVGVD 287
              + H   +  +K +      L + S+D  + +        D+     +  +   +G+ 
Sbjct: 361 VFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418

Query: 288 MSVLVEGLLASTGWDELVYVWQQG 311
           +S   +G +A     + + ++  G
Sbjct: 419 VSA--DGDIAVAACYKHIAIYSHG 440

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  117 bits (296), Expect = 1e-29
 Identities = 32/260 (12%), Positives = 79/260 (30%), Gaps = 27/260 (10%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
             +K +   +  L   +        +  + V+    +    ++ VA   +     LA S 
Sbjct: 371 TGIKTTS--KGDLFTVS-------WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS- 420

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT 130
             D  +  A     + IY                +         +  ++        D  
Sbjct: 421 -ADGDIAVAACYKHIAIYSHG-----KLTEVPISYN--SSCVALSNDKQ-FVAVGGQDSK 471

Query: 131 VKLWTVDRPTSVR-TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV---REMGSTM 186
           V ++ +   +        H   + +  ++  +     +      +  + V    E+  T 
Sbjct: 472 VHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTN 530

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN-YRVPIAVLNGHGYAVRKVKFS 245
               H  ++    W+  D+  +A+ S+D S+ +W++      PI +   H  +       
Sbjct: 531 SWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 589

Query: 246 PHRRNLLASCSYDMTVCLWD 265
            +    + S   D  +  W+
Sbjct: 590 LNET-TIVSAGQDSNIKFWN 608

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  115 bits (291), Expect = 6e-29
 Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 29/258 (11%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTR 118
             +  L+ S   D   + +  A+G +  +D +   T    R   + H   +         
Sbjct: 325 KAITALSSS--ADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMITGIKTTSKG 379

Query: 119 RDSFITSSWDDTVKLW---TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
                T SWDD +K+         +S     + +        +         A+    + 
Sbjct: 380 D--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA--VAACYKHIA 435

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
           I+   ++          +       +  D   +A    D  + ++ +    V       H
Sbjct: 436 IYSHGKLTEVP----ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 490

Query: 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED----ALVGRYDHHTEFAVGVDMSVL 291
              +  V FS +    L +      V  +   V +    A    +  HT     V  S  
Sbjct: 491 PAEITSVAFSNNGA-FLVATDQSRKVIPYS--VANNFELAHTNSWTFHTAKVACVSWS-- 545

Query: 292 VEG-LLASTGWDELVYVW 308
            +   LA+   D  V VW
Sbjct: 546 PDNVRLATGSLDNSVIVW 563

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  113 bits (284), Expect = 4e-28
 Identities = 34/253 (13%), Positives = 79/253 (31%), Gaps = 18/253 (7%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             +  +  +      L     D  +K+         +     ++ + +      +     
Sbjct: 368 TMITGIKTT--SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD- 424

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
               ++    + +++  + T V     ++ CV     +            D  + ++ + 
Sbjct: 425 -IAVAACYKHIAIYSHGKLTEV-PISYNSSCV---ALSN-DKQFVAVGGQDSKVHVYKL- 477

Query: 181 EMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHG 236
              S   +    H  EI +  ++  +   + +    + +  + V N            H 
Sbjct: 478 SGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 536

Query: 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFM-VEDALVGRYDHHTEFAVGVDMSVLVEGL 295
             V  V +SP     LA+ S D +V +W+     D  +     H   +V   +  L E  
Sbjct: 537 AKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETT 594

Query: 296 LASTGWDELVYVW 308
           + S G D  +  W
Sbjct: 595 IVSAGQDSNIKFW 607

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  109 bits (276), Expect = 5e-27
 Identities = 42/256 (16%), Positives = 85/256 (33%), Gaps = 28/256 (10%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTR 118
             V+ L WS   D   IA A AD ++KI++ A   T    +++      E        T+
Sbjct: 240 GSVFGLTWS--PDGTKIASASADKTIKIWNVA---TLKVEKTIPVGTRIEDQQLGIIWTK 294

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
           + + ++ S +  +     +  +  +    H   +   + +     +F SA  +  +  WD
Sbjct: 295 Q-ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWD 352

Query: 179 VREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDV--RNYRVPIAVLNG 234
           +   G +  +    H   I            + + S D  +K+            AV N 
Sbjct: 353 I-STGISNRVFPDVHATMITGIKTT--SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409

Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV--DMSVLV 292
                  +  S     +  +  Y   + ++       L      +    V +  D     
Sbjct: 410 LSSQPLGLAVSADGD-IAVAACYK-HIAIYS---HGKLTEVPISYNSSCVALSND----- 459

Query: 293 EGLLASTGWDELVYVW 308
           +  +A  G D  V+V+
Sbjct: 460 KQFVAVGGQDSKVHVY 475

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  101 bits (254), Expect = 4e-24
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 22/194 (11%)

Query: 124 TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183
             +   TV +      T    + EH++    A  +P       S      +RIWD  +  
Sbjct: 37  NGTSVYTVPVG---SLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTT 92

Query: 184 STMIIP--AHEFEILACDWNKYDDCLIASAS--VDKSIKIWDVRNYRVPIAVLNGHGYAV 239
             +          +    W+  +   IA+     ++   ++           L G   A+
Sbjct: 93  HILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAM 150

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGV----DMSVLVEG 294
             V F P R   + S S D TV +++           +  HT+F   V    D S     
Sbjct: 151 NSVDFKPSRPFRIISGSDDNTVAIFE--GPPFKFKSTFGEHTKFVHSVRYNPDGS----- 203

Query: 295 LLASTGWDELVYVW 308
           L ASTG D  + ++
Sbjct: 204 LFASTGGDGTIVLY 217

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 31/219 (14%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
             +  S   +  +AVA            + +           +L     +     +A S 
Sbjct: 415 LGLAVSA--DGDIAVAA-------CYKHIAIYSHG-------KLTEVPISYNSSCVALS- 457

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWD 128
            +D   +A    D  V +Y  +    A+        H  E+ S  ++       + +   
Sbjct: 458 -NDKQFVAVGGQDSKVHVYKLS---GASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQS 512

Query: 129 DTVKLWTVD---RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV--REMG 183
             V  ++V          ++  H   V   +W+P  +    + S D ++ +W++      
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDH 571

Query: 184 STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
             +I  AH    +       ++  I SA  D +IK W+V
Sbjct: 572 PIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNV 609

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
            +C+ +   T+ +  +     T I   H  +      +       AS  V  +++IWD  
Sbjct: 34  QYCNGTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTT 89

Query: 224 N-YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS--YDMTVCLWDFMVED-ALVGRYDHH 279
               +    +      V+ + +    +  +A+     +    ++    +     G     
Sbjct: 90  QTTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFL--FDTGTSNGNLTGQ 146

Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
                 VD        + S   D  V +++
Sbjct: 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  ++WS   D++ +A    D SV +++    P+ +PI     H     ++       
Sbjct: 537 AKVACVSWS--PDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNET 593

Query: 120 DSFITSSWDDTVKLWTVD 137
            + +++  D  +K W V 
Sbjct: 594 -TIVSAGQDSNIKFWNVP 610

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  133 bits (336), Expect = 2e-36
 Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 18/254 (7%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALP-PTANPIRSLHEHTREVHSADYNPTR 118
             V   A++       +A    D    IY+           R L  HT  +    +    
Sbjct: 98  SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
           +   +TSS D T  LW ++      TF  H   V + +  P  + +F S + D + ++WD
Sbjct: 156 Q--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWD 212

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY- 237
           VRE         HE +I A  +   +    A+ S D + +++D+R  +  +   +     
Sbjct: 213 VREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNII 270

Query: 238 -AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEG- 294
             +  V FS   R LL +   D    +WD         G    H      + ++   +G 
Sbjct: 271 CGITSVSFSKSGR-LLLAGYDDFNCNVWD--ALKADRAGVLAGHDNRVSCLGVT--DDGM 325

Query: 295 LLASTGWDELVYVW 308
            +A+  WD  + +W
Sbjct: 326 AVATGSWDSFLKIW 339

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  132 bits (334), Expect = 3e-36
 Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 12/207 (5%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             +    +    D+ ++ +  D +  ++D     T     +   HT +V S    P  R 
Sbjct: 144 GYLSCCRFL--DDNQIVTSSGDTTCALWDIE---TGQQTTTFTGHTGDVMSLSLAPDTR- 197

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
            F++ + D + KLW V      +TF  H   +    + P + + F + S D T R++D+R
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 256

Query: 181 --EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
             +   T         I +  ++K    L+ +   D +  +WD         VL GH   
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNR 314

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWD 265
           V  +  +      +A+ S+D  + +W+
Sbjct: 315 VSCLGVTDDGM-AVATGSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  113 bits (286), Expect = 2e-29
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 14/204 (6%)

Query: 70  ESHDSLLIAAVADGSVKIYDTALPPTAN----PIRSLHEHTREVHSADYNPTRRDSFITS 125
           ++       A AD ++      + P         R+L  H  ++++  +    R   +++
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSR-LLLSA 73

Query: 126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV--REMG 183
           S D  + +W       V      +  V    + P   +       D    I+++  RE  
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGN 132

Query: 184 STMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
             +      H   +  C +   DD  I ++S D +  +WD+           GH   V  
Sbjct: 133 VRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMS 189

Query: 242 VKFSPHRRNLLASCSYDMTVCLWD 265
           +  +P  R L  S + D +  LWD
Sbjct: 190 LSLAPDTR-LFVSGACDASAKLWD 212

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 77.9 bits (193), Expect = 2e-16
 Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 52/167 (31%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN 158
              L    R+   A  + T     IT++ D   ++       + RT + H   +Y   W 
Sbjct: 11  AEQLKNQIRDARKACADATLSQ--ITNNIDPVGRIQM----RTRRTLRGHLAKIYAMHWG 64

Query: 159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
                                                        D  L+ SAS D  + 
Sbjct: 65  T--------------------------------------------DSRLLLSASQDGKLI 80

Query: 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           IWD       +  +      V    ++P     +A    D    +++
Sbjct: 81  IWDSYTTN-KVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYN 125

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  134 bits (339), Expect = 3e-36
 Identities = 52/252 (20%), Positives = 101/252 (40%), Gaps = 28/252 (11%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
            GV+        D+++I+   D ++K+++     T   I +L+ HT  V     +  R  
Sbjct: 160 GGVWSSQMR---DNIIISGSTDRTLKVWNAE---TGECIHTLYGHTSTVRCMHLHEKR-- 211

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             ++ S D T+++W ++    +     H   V    ++ R      S + D  +++WD  
Sbjct: 212 -VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPE 267

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
                  +  H   + +    ++D   + S S+D SI++WDV      I  L GH     
Sbjct: 268 TETCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTS 323

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFM---VEDALVGRYDHHTE-FAVGVDMSVLVEGLL 296
            ++      N+L S + D TV +WD         L G   H +    +  +     +  +
Sbjct: 324 GMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFV 375

Query: 297 ASTGWDELVYVW 308
            ++  D  V +W
Sbjct: 376 ITSSDDGTVKLW 387

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  127 bits (321), Expect = 1e-33
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 27/242 (11%)

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
                 I     D ++K++      T   +R+L  HT  V S+       +  I+ S D 
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDR 179

Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
           T+K+W  +    + T   H   V     + +      S S D TLR+WD+       ++ 
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLM 236

Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
            H   +       YD   + S + D  +K+WD       +  L GH   V  ++F     
Sbjct: 237 GHVAAVRCVQ---YDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQFDGIH- 291

Query: 250 NLLASCSYDMTVCLWDFM---VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY 306
             + S S D ++ +WD         L G    H     G+++    + +L S   D  V 
Sbjct: 292 --VVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELK---DNILVSGNADSTVK 342

Query: 307 VW 308
           +W
Sbjct: 343 IW 344

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  112 bits (283), Expect = 2e-28
 Identities = 40/220 (18%), Positives = 92/220 (41%), Gaps = 27/220 (12%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             V  + +       +++   D  VK++D     T   + +L  HT  V+S  ++     
Sbjct: 240 AAVRCVQY---DGRRVVSGAYDFMVKVWDPE---TETCLHTLQGHTNRVYSLQFDGIH-- 291

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             ++ S D ++++W V+    + T   H              ++  S + D T++IWD++
Sbjct: 292 -VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIK 347

Query: 181 --EMGSTMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN----YRVPIAVLN 233
             +   T+     H+  +      +++   + ++S D ++K+WD++       +      
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCL---QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMT----VCLWDFMVE 269
           G G  V +++ S  +  + A  S + T    + + DF V+
Sbjct: 405 GSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD 443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  111 bits (279), Expect = 7e-28
 Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 94  PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153
                 + L  H   V +           ++ S D+T+K+W+      +RT   H   V+
Sbjct: 106 GELKSPKVLKGHDDHVITC-LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 163

Query: 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
           ++       ++  S S D TL++W+         +  H   +         +  + S S 
Sbjct: 164 SSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGSR 217

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-- 271
           D ++++WD+      + VL GH  AVR V++       + S +YD  V +WD   E    
Sbjct: 218 DATLRVWDIET-GQCLHVLMGHVAAVRCVQYDG---RRVVSGAYDFMVKVWDPETETCLH 273

Query: 272 -LVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
            L G    HT     V  S+  +G  + S   D  + VW
Sbjct: 274 TLQG----HTN---RV-YSLQFDGIHVVSGSLDTSIRVW 304

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  105 bits (265), Expect = 6e-26
 Identities = 47/216 (21%), Positives = 74/216 (34%), Gaps = 18/216 (8%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN 154
                  LH   R+V    +  +   S            W      S +  K H   V  
Sbjct: 65  EEGIDEPLHIKRRKVIKPGFIHSPWKS-AYIRQHRIDTNWRRGELKSPKVLKGHDDHVIT 123

Query: 155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214
                   +   S S D TL++W          +  H   + +    +  D +I S S D
Sbjct: 124 C-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS---QMRDNIIISGSTD 178

Query: 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALV 273
           +++K+W+       I  L GH   VR +         + S S D T+ +WD  +E    +
Sbjct: 179 RTLKVWNAETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWD--IETGQCL 232

Query: 274 GRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
                H   AV     V  +G  + S  +D +V VW
Sbjct: 233 HVLMGHVA-AV---RCVQYDGRRVVSGAYDFMVKVW 264

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 88.5 bits (220), Expect = 6e-20
 Identities = 29/181 (16%), Positives = 55/181 (30%), Gaps = 11/181 (6%)

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
           D+ +                    V    +                   W   E+ S  +
Sbjct: 55  DNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS-AYIRQHRIDTNWRRGELKSPKV 113

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
           +  H+  ++ C    +    I S S D ++K+W     +  +  L GH   V   +   +
Sbjct: 114 LKGHDDHVITC-LQ-FCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDN 170

Query: 248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
               + S S D T+ +W+       +     HT     + +    E  + S   D  + V
Sbjct: 171 I---IISGSTDRTLKVWN-AETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRV 223

Query: 308 W 308
           W
Sbjct: 224 W 224

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  132 bits (335), Expect = 3e-36
 Identities = 64/292 (21%), Positives = 115/292 (39%), Gaps = 36/292 (12%)

Query: 53  ELVAFDTA--DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREV 109
            +V    A  + ++D      +    +A   +D ++KI++     T   I +L  H   V
Sbjct: 2   SMVVIANAHNELIHDAVLD--YYGKRLATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPV 58

Query: 110 HSADYNPTRRDSFITS-SWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS-DVF 165
              D+   +  + + S S+D  V +W  +  R + +     H+  V +  W P     + 
Sbjct: 59  WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 118

Query: 166 CSASGDCTLRIWDVREMG--STMIIPAHEFEILACDWN------------KYDDCLIASA 211
             AS D  + + + +E G  S +II AH   + +  W               +     + 
Sbjct: 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178

Query: 212 SVDKSIKIWDVRN---YRVPIAVLNGHGYAVRKVKFSP--HRRNLLASCSYDMTVCLWDF 266
             D  +KIW   +     V  + L GH   VR V +SP    R+ LAS S D T  +W  
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238

Query: 267 MVEDA----LVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMD 313
             E       + + +   +       S+   G +LA +G D  V +W++ ++
Sbjct: 239 DNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKENLE 288

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 39/229 (17%), Positives = 68/229 (29%), Gaps = 39/229 (17%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W+      L+  A +DG V + +            +  H   V+SA + P   
Sbjct: 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 160

Query: 120 DS------------FITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNP--RH 161
           +             F+T   D+ VK+W  +          T + H+  V +  W+P    
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220

Query: 162 SDVFCSASGDCTLRIWDV-----REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
                S S D T  IW           + +        +    W+     ++A +  D  
Sbjct: 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNK 279

Query: 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           + +W           L G      +V           S     T   +D
Sbjct: 280 VTLWKEN--------LEGKWEPAGEVHQGG-----GGSGGGGATSKEFD 315

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 21/193 (10%)

Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACD 199
           V     H   +++A  +  +     + S D T++I++V      +I     HE  +   D
Sbjct: 4   VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 62

Query: 200 WNKYDDC--LIASASVDKSIKIWDVRN-YRVPIAVLNGHGYAVRKVKFSPHRR-NLLASC 255
           W  +     ++AS S D  + IW   N     IAV   H  +V  V+++PH    LL   
Sbjct: 63  WA-HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121

Query: 256 SYDMTVCLWDFMVEDALVGR-YDHHTE------FAVGVDMSVLVEG------LLASTGWD 302
           S D  V + +F           D H        +A                    + G D
Sbjct: 122 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181

Query: 303 ELVYVWQQGMDPR 315
            LV +W+   D +
Sbjct: 182 NLVKIWKYNSDAQ 194

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 55  VAFDTADGVYDLAWSESHDSLLIA-AVADGSVKIYDTAL-PPTANPIRSLHEHTREVHSA 112
            ++  A    D   + + +S       AD  VKI+       T     +L  H+  V   
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212

Query: 113 DYNPTRRDSFI--TSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVF 165
            ++PT        + S D T  +WT D         +   ++    ++ A+W+   + V 
Sbjct: 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VL 271

Query: 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY 225
             + GD  + +W     G          E+              S     + K +D    
Sbjct: 272 ALSGGDNKVTLWKENLEGKWEPA----GEV--------HQGGGGSGGGGATSKEFDGPC- 318

Query: 226 RVPIAVLNGH-GYAVRKVKFSPHRRNLLASCSYD 258
           +  I +L       +   K     R   AS ++ 
Sbjct: 319 QNEIDLLFSECNDEIDNAKLIMKERRFTASYTFA 352

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  130 bits (330), Expect = 4e-36
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 36/291 (12%)

Query: 54  LVAFDTA--DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVH 110
           +V    A  + ++D      +    +A   +D ++KI++     T   I +L  H   V 
Sbjct: 1   MVVIANAHNEMIHDAVMD--YYGKRMATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPVW 57

Query: 111 SADYNPTRRDSFITS-SWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS-DVFC 166
             D+   +  + + S S+D  V +W  +  R + +     H+  V +  W P     +  
Sbjct: 58  RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLL 117

Query: 167 SASGDCTLRIWDVREMG--STMIIPAHEFEILACDWN------------KYDDCLIASAS 212
            AS D  + + + +E G  S +II AH   + +  W               +     +  
Sbjct: 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177

Query: 213 VDKSIKIWDVRN---YRVPIAVLNGHGYAVRKVKFSP--HRRNLLASCSYDMTVCLWDFM 267
            D  +KIW   +     V  + L GH   VR V +SP    R+ +AS S D T  +W   
Sbjct: 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237

Query: 268 VEDA----LVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMD 313
            E       + + +   +       S  + G +LA +G D  V +W++ ++
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLWKENLE 286

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 26/199 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W+      ++  A +DG V + +            +  H   V+SA + P   
Sbjct: 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATI 158

Query: 120 DS------------FITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNP--RH 161
           +             F+T   D+ VK+W  +          T + H+  V +  W+P    
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218

Query: 162 SDVFCSASGDCTLRIWDV-----REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
                S S D T  IW           + +        +    W+     ++A +  D  
Sbjct: 219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNK 277

Query: 217 IKIWDVRNYRVPIAVLNGH 235
           + +W              H
Sbjct: 278 VTLWKENLEGKWEPAGEVH 296

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  131 bits (332), Expect = 7e-36
 Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 17/256 (6%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTA---LPPTANPIRSLHEHTREVHSADYNP 116
             V   A++       IA    D    +Y          A   +S+  HT  + +  +  
Sbjct: 107 TWVMACAYA--PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164

Query: 117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP-RHSDVFCSASGDCTLR 175
           +     +T+S D T  LW V+    +++F  H   V      P    + F S   D    
Sbjct: 165 SDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
           +WD+R          HE ++ +  +        AS S D + +++D+R  R  +A+ +  
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADR-EVAIYSKE 281

Query: 236 G--YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE 293
              +    V FS   R LL +   D T+ +WD +++ + V     H      + +S   +
Sbjct: 282 SIIFGASSVDFSLSGR-LLFAGYNDYTINVWD-VLKGSRVSILFGHENRVSTLRVS--PD 337

Query: 294 G-LLASTGWDELVYVW 308
           G    S  WD  + VW
Sbjct: 338 GTAFCSGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  118 bits (298), Expect = 5e-31
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 21/222 (9%)

Query: 61  DGVYDLAWS---ESHDSLLIA-AVADGSVKIYDTA------LPPTANPIRSLHEHTREVH 110
           +     +     ES    L         V+++  A              R+L  H  +V 
Sbjct: 9   ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVL 68

Query: 111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG 170
             D+   +R   ++SS D  V +W                 V    + P           
Sbjct: 69  CMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGL 126

Query: 171 DCTLRIWDVREMGSTMIIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
           D    ++ +    +  +         H   + AC +    D  I +AS D +  +WDV +
Sbjct: 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVES 185

Query: 225 YRVPIAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWD 265
               +   +GHG  V  +  +P    N   S   D    +WD
Sbjct: 186 -GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 21/167 (12%), Positives = 41/167 (24%), Gaps = 37/167 (22%)

Query: 101 SLHEHTREVHSADYNPTRRDSF--ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN 158
           +          A       ++        ++  KL  V+                     
Sbjct: 3   ATDGLHENETLASLKS---EAESLKGKLEEERAKLHDVE------------------LHQ 41

Query: 159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
                          +       M +   +  H  ++L  DW K D   I S+S D  + 
Sbjct: 42  VAE-----------RVEALGQFVMKTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVI 89

Query: 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           +WD          +      V    ++P     +A    D    ++ 
Sbjct: 90  VWDSFT-TNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYP 134

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  130 bits (329), Expect = 9e-36
 Identities = 43/210 (20%), Positives = 86/210 (40%), Gaps = 13/210 (6%)

Query: 61  DGVYDLAWS--ESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
           D ++ +AW   +  +S  +     D  VK++        +   SL  H   V S D +  
Sbjct: 33  DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVDISH- 90

Query: 118 RRDS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
                   +SS D  ++LW ++    +++        +   ++P  S    + +    + 
Sbjct: 91  --TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVN 147

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
           I+ V        +      IL+  ++  D   +AS ++D  I I+D+   +  +  L GH
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGK-LLHTLEGH 205

Query: 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              +R + FSP  + LL + S D  + ++D
Sbjct: 206 AMPIRSLTFSPDSQ-LLVTASDDGYIKIYD 234

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  130 bits (329), Expect = 1e-35
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 15/208 (7%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
            GV  +  S  H   + A +  D  ++++D         I+S+     +  +  ++P   
Sbjct: 81  LGVVSVDIS--HTLPIAASSSLDAHIRLWDLE---NGKQIKSIDAGPVDAWTLAFSP--- 132

Query: 120 DS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
           DS    T +    V ++ V+      +       + +  ++P       S + D  + I+
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIF 191

Query: 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
           D+        +  H   I +  ++  D  L+ +AS D  IKI+DV++       L+GH  
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHAS 249

Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            V  V F P       S S D +V +WD
Sbjct: 250 WVLNVAFCPDDT-HFVSSSSDKSVKVWD 276

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  127 bits (323), Expect = 7e-35
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 23/212 (10%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
              + LA+S   DS  +A     G V I+      +     SL    + + S  Y+P   
Sbjct: 123 VDAWTLAFS--PDSQYLATGTHVGKVNIFGVE---SGKKEYSLDTRGKFILSIAYSP--- 174

Query: 120 DS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTLR 175
           D     + + D  + ++ +     + T + HA  + + T++P  +      +AS D  ++
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL---LVTASDDGYIK 231

Query: 176 IWDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
           I+DV    +  T+    H   +L   +   DD    S+S DKS+K+WDV   R  +    
Sbjct: 232 IYDVQHANLAGTLS--GHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGT-RTCVHTFF 287

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            H   V  VK++ +    + S   D  + ++D
Sbjct: 288 DHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYD 318

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  114 bits (288), Expect = 7e-30
 Identities = 37/195 (18%), Positives = 80/195 (41%), Gaps = 14/195 (7%)

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP---RHSDVFCSASGDCTLRIW 177
               SS ++     T       +  + H   +++  W      +S+   + S D  +++W
Sbjct: 4   HHHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW 63

Query: 178 DVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
             R+    +      H+  +++ D +     + AS+S+D  I++WD+ N    I  ++  
Sbjct: 64  KWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLEN-GKQIKSIDAG 121

Query: 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEG 294
                 + FSP  +  LA+ ++   V ++   VE        D   +F + +  S   +G
Sbjct: 122 PVDAWTLAFSPDSQ-YLATGTHVGKVNIFG--VESGKKEYSLDTRGKFILSIAYS--PDG 176

Query: 295 -LLASTGWDELVYVW 308
             LAS   D ++ ++
Sbjct: 177 KYLASGAIDGIINIF 191

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 99.8 bits (250), Expect = 2e-24
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             +  +A+S   D   +A    DG + I+D A   T   + +L  H   + S  ++P  +
Sbjct: 165 KFILSIAYS--PDGKYLASGAIDGIINIFDIA---TGKLLHTLEGHAMPIRSLTFSPDSQ 219

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTLRIW 177
              +T+S D  +K++ V       T   HA  V N  + P   H   F S+S D ++++W
Sbjct: 220 -LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH---FVSSSSDKSVKVW 275

Query: 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
           DV           H+ ++    +N  +   I S   D+ I I+D 
Sbjct: 276 DVGTRTCVHTFFDHQDQVWGVKYN-GNGSKIVSVGDDQEIHIYDC 319

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 79.0 bits (196), Expect = 6e-17
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 60  ADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
           A  +  L +S   DS L+  A  DG +KIYD      AN   +L  H   V +  + P  
Sbjct: 206 AMPIRSLTFS--PDSQLLVTASDDGYIKIYDVQ---HANLAGTLSGHASWVLNVAFCP-- 258

Query: 119 RDS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
            D   F++SS D +VK+W V   T V TF +H   V+   +N  +     S   D  + I
Sbjct: 259 -DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHI 316

Query: 177 WDV 179
           +D 
Sbjct: 317 YDC 319

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  135 bits (342), Expect = 1e-35
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 21/214 (9%)

Query: 61   DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
            + V D       DS L++   DG+VK+++     T    R    H   V S   +     
Sbjct: 1045 ETVKDFRLL--QDSRLLSWSFDGTVKVWNVI---TGRIERDFTCHQGTVLSCAISSDAT- 1098

Query: 121  SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV- 179
             F ++S D T K+W+ D  + +   K H  CV  + ++     +  +   +  +RIW+V 
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVS 1157

Query: 180  --------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV 231
                      +        H   +    ++  D   + SA     +K W+V         
Sbjct: 1158 DGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVAT-GDSSQT 1213

Query: 232  LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
               +G  ++K+  SP  R    +      + +  
Sbjct: 1214 FYTNGTNLKKIHVSPDFR-TYVTVDNLGILYILQ 1246

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  132 bits (334), Expect = 2e-34
 Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 26/263 (9%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           D VY   +S   D   IA   AD +++++      T   +  +  H  EV    ++    
Sbjct: 616 DAVYHACFS--QDGQRIASCGADKTLQVFKAE---TGEKLLDIKAHEDEVLCCAFSSDDS 670

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR-HSDVFCSASGDCTLRIWD 178
               T S D  VK+W       V T+ EH+  V    +  + +  +  + S D  L++WD
Sbjct: 671 -YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV------------RNYR 226
           + +      +  H   +  C ++  DD L+AS S D ++++WDV            R + 
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788

Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV 286
                       V+   +S      +   + +  V L+D      L   +  H       
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGD-KIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYC 846

Query: 287 DMSVLVEG-LLASTGWDELVYVW 308
           D S      L         V +W
Sbjct: 847 DFS--PYDHLAVIALSQYCVELW 867

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  129 bits (326), Expect = 2e-33
 Identities = 41/251 (16%), Positives = 91/251 (36%), Gaps = 22/251 (8%)

Query: 61   DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRR 119
              V   +WS   D   I   A   V ++D     T+  +  +H  H   +   D++P   
Sbjct: 799  VIVKCCSWS--ADGDKIIVAAKNKVLLFDIH---TSGLLAEIHTGHHSTIQYCDFSPYDH 853

Query: 120  DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
               + +     V+LW +D    V   + H   V+   ++P     F +AS D T+R+W+ 
Sbjct: 854  -LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET 911

Query: 180  REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
            +             + +   +   ++ ++ +    + +++   +       +       V
Sbjct: 912  K--KVCKNSAIVLKQEIDVVFQ-ENETMVLAVDNIRGLQLIAGKT----GQIDYLPEAQV 964

Query: 240  RKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEG-LLA 297
                 SPH    +A    D  + + +  + +  +      H +    +  +   +G  L 
Sbjct: 965  SCCCLSPHLE-YVAFGDEDGAIKIIE--LPNNRVFSSGVGHKKAVRHIQFT--ADGKTLI 1019

Query: 298  STGWDELVYVW 308
            S+  D ++ VW
Sbjct: 1020 SSSEDSVIQVW 1030

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  125 bits (315), Expect = 4e-32
 Identities = 54/310 (17%), Positives = 105/310 (33%), Gaps = 39/310 (12%)

Query: 11   YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
                 SP +   +A           +G + +++L       +  V       V  + ++ 
Sbjct: 965  SCCCLSP-HLEYVAFGDE-------DGAIKIIELPNNRV-FSSGVGHK--KAVRHIQFT- 1012

Query: 71   SHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
              D   + +   D  +++++     T + +  L  H   V         R   ++ S+D 
Sbjct: 1013 -ADGKTLISSSEDSVIQVWNWQ---TGDYV-FLQAHQETVKDFRLLQDSR--LLSWSFDG 1065

Query: 130  TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
            TVK+W V      R F  H   V +   +   +  F S S D T +IW    +     + 
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELK 1124

Query: 190  AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN--------YRVPIAVLNGHGYAVRK 241
             H   +    ++  D  L+A+   +  I+IW+V +                  HG  V  
Sbjct: 1125 GHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183

Query: 242  VKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEG-LLAST 299
            V FSP  +  L S      +  W+  V        +  +      + +S   +     + 
Sbjct: 1184 VCFSPDSK-TLVSAG--GYLKWWN--VATGDSSQTFYTNGTNLKKIHVSP--DFRTYVTV 1236

Query: 300  GWDELVYVWQ 309
                ++Y+ Q
Sbjct: 1237 DNLGILYILQ 1246

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  121 bits (306), Expect = 7e-31
 Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 24/251 (9%)

Query: 61   DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
              V+ + +S   D      A  D ++++++T         ++     ++     +     
Sbjct: 883  SWVHGVMFS--PDGSSFLTASDDQTIRVWETK-----KVCKNSAIVLKQEIDVVFQENET 935

Query: 120  DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
               +       ++L       + +        V     +P H +       D  ++I ++
Sbjct: 936  -MVLAVDNIRGLQLIAGK---TGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIEL 990

Query: 180  REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
                       H+  +    +   D   + S+S D  I++W+ +        L  H   V
Sbjct: 991  PNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETV 1047

Query: 240  RKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEG-LLA 297
            +  +     R  L S S+D TV +W+  V    +   +  H    +   +S   +    +
Sbjct: 1048 KDFRLLQDSR--LLSWSFDGTVKVWN--VITGRIERDFTCHQGTVLSCAIS--SDATKFS 1101

Query: 298  STGWDELVYVW 308
            ST  D+   +W
Sbjct: 1102 STSADKTAKIW 1112

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 92.2 bits (229), Expect = 7e-21
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 32/222 (14%)

Query: 11   YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
               +     +SRL   +        +G V V ++        +         V   A S 
Sbjct: 1048 KDFRLLQ--DSRLLSWS-------FDGTVKVWNVITGRI-ERDFTCHQ--GTVLSCAIS- 1094

Query: 71   SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
              D+   +   AD + KI+        +P+  L  H   V  + ++        T   + 
Sbjct: 1095 -SDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGI-LLATGDDNG 1149

Query: 130  TVKLW---------TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             +++W         +    +       H   V +  ++P    +    S    L+ W+V 
Sbjct: 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL---VSAGGYLKWWNVA 1206

Query: 181  EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
               S+     +   +     +  D     +      + I  V
Sbjct: 1207 TGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 61   DGVYDLAWSESHDSLLIA-AVADGSVKIYDTA------LPPTANPIRSLHEHTREVHSAD 113
              V   A+S   D +L+A    +G ++I++ +           +       H   V    
Sbjct: 1128 GCVRCSAFS--LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185

Query: 114  YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173
            ++P   DS    S    +K W V    S +TF  +   +     +P     + +      
Sbjct: 1186 FSP---DSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGI 1241

Query: 174  LRIWDVRE 181
            L I  V E
Sbjct: 1242 LYILQVLE 1249

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 14/149 (9%)

Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
            +  +         +++       S +     + ++ A         L       K+IK 
Sbjct: 550 LNGHLLGRQPFPNIVQLGLCEPETSEV---YRQAKLQAKQEGD-TGRLYLEWINKKTIKN 605

Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
                      V+  H  AV    FS   +  +ASC  D T+ ++        +     H
Sbjct: 606 LS-------RLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFK-AETGEKLLDIKAH 656

Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVW 308
            +  +    S      +A+   D+ V +W
Sbjct: 657 EDEVLCCAFSSDDS-YIATCSADKKVKIW 684

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  131 bits (333), Expect = 1e-35
 Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 35/269 (13%)

Query: 69  SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD 128
           +   D L +   A+ + ++                 H   +++ D  P      ++   D
Sbjct: 10  TGLEDPLRLRR-AESTRRVLGLE---LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSD 65

Query: 129 DTVKLWTVDRPTSVRTFKE-------------HAYCVYNATWNPRHSDVFCSASGDCTLR 175
             + L+ ++  +    +               H Y V    W P  + +F S+S D TL+
Sbjct: 66  GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125

Query: 176 IWDVREMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
           +WD      T  +   E  + +          CL+A  +    +++ D+++      +L 
Sbjct: 126 VWDT-NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS-GSCSHILQ 183

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-- 291
           GH   +  V +SP    +LA+ S D  V LWD       +   D H         S    
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243

Query: 292 ----VEGL--------LASTGWDELVYVW 308
               V GL        L + G D  + +W
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  116 bits (294), Expect = 5e-30
 Identities = 45/337 (13%), Positives = 92/337 (27%), Gaps = 61/337 (18%)

Query: 11  YSVKFSPFYESRLA------------VATAQNFGILGNGRVHVLDLSPAAPALTELVAFD 58
            ++   P     +             +  +         R              +     
Sbjct: 47  NTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--------RQSYYTCKAVCSIGRDHPDVH 98

Query: 59  TADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP- 116
               V  + W   HD+ +   +  D ++K++DT    T             V+S   +P 
Sbjct: 99  R-YSVETVQWY-PHDTGMFTSSSFDKTLKVWDTN---TLQTADVF-NFEETVYSHHMSPV 152

Query: 117 -TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
            T+       +    V+L  +   +     + H   +   +W+PR+  +  +AS D  ++
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212

Query: 176 IWDVRE-MGSTMIIPAHEFEILACDWNKY--------------DDCLIASASVDKSIKIW 220
           +WDVR   G  + +  H  +      +                D   + +   D  +++W
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272

Query: 221 DVRNYRVPIAVLNGHGY--------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-A 271
           +  N      V  G                  S           Y  T+ ++   V    
Sbjct: 273 NSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCSSE----FVFVPYGSTIAVYT--VYSGE 325

Query: 272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
            +     H +              L S   D  +  W
Sbjct: 326 QITMLKGHYKTVDCCVFQ-SNFQELYSGSRDCNILAW 361

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  103 bits (259), Expect = 4e-25
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 27/224 (12%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTA-------------LPPTANPIRSLHEHTR 107
             +  ++WS  +D +L  A AD  VK++D                  +     +   H  
Sbjct: 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246

Query: 108 EVHSADYNPTRRDS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF 165
           +V+   +     D    +T   D+ ++LW      +                    S   
Sbjct: 247 KVNGLCFTS---DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303

Query: 166 ----CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
                      T+ ++ V       ++  H   +  C +   +   + S S D +I  W 
Sbjct: 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ-SNFQELYSGSRDCNILAWV 362

Query: 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              Y      +        K + +P   +  +S   +     W 
Sbjct: 363 PSLYEP----VPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 85.8 bits (213), Expect = 5e-19
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 16/172 (9%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  L ++   D L +     D  +++++++           +             T  
Sbjct: 246 GKVNGLCFT--SDGLHLLTVGTDNRMRLWNSS---NGENTLVNYGKVCNNSKKGLKFTVS 300

Query: 120 DSF----ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
                  +   +  T+ ++TV     +   K H   V    +   +     S S DC + 
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNIL 359

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS-IKIWDVRNYR 226
            W    +     +P  +        N        S+S ++     W    + 
Sbjct: 360 AWVP-SLYEP--VPDDDETTTKSQLNP-AFEDAWSSSDEEGGTSAWSHPQFE 407

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  128 bits (324), Expect = 4e-35
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 17/211 (8%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
            G+ D+AWS   DS L+  A  D ++KI+D +   +   +++L  H+  V   ++NP   
Sbjct: 66  LGISDVAWS--SDSNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSN 120

Query: 120 DSFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
              I S S+D++V++W V     ++T   H+  V    +N     +  S+S D   RIWD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 177

Query: 179 VREMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG 236
               G  +          +    ++  +   I +A++D ++K+WD       +    GH 
Sbjct: 178 T-ASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHK 234

Query: 237 YAVRKVKFSPHRRN--LLASCSYDMTVCLWD 265
                +  +        + S S D  V +W+
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  121 bits (305), Expect = 3e-32
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 81  ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140
           A  S     T + P      +L  HT+ V S  ++P       +SS D  +K+W      
Sbjct: 1   ATQS---KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK 56

Query: 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW 200
             +T   H   + +  W+   S++  SAS D TL+IWDV        +  H   +  C++
Sbjct: 57  FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115

Query: 201 NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
           N     LI S S D+S++IWDV+     +  L  H   V  V F+     L+ S SYD  
Sbjct: 116 N-PQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGL 172

Query: 261 VCLWD 265
             +WD
Sbjct: 173 CRIWD 177

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 89.1 bits (222), Expect = 1e-20
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 17/170 (10%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTR 118
           D V  + ++   D  LI  +  DG  +I+DTA   +   +++L  +    V    ++P  
Sbjct: 150 DPVSAVHFN--RDGSLIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNG 204

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLRI 176
           +   + ++ D+T+KLW   +   ++T+  H    Y    N   +      S S D  + I
Sbjct: 205 K-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263

Query: 177 WDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASV--DKSIKIWDV 222
           W++  +E+     +  H   +++   +   + +IASA++  DK+IK+W  
Sbjct: 264 WNLQTKEIVQK--LQGHTDVVISTACH-PTENIIASAALENDKTIKLWKS 310

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 61  DGVYDLAWSESH-DSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
           +  Y +  + S      I     D  V I++     T   ++ L  HT  V S   +PT 
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVISTACHPTE 291

Query: 119 RDSFITSSW--DDTVKLWTVD 137
                +++   D T+KLW  D
Sbjct: 292 N-IIASAALENDKTIKLWKSD 311

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  128 bits (324), Expect = 6e-35
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 20/185 (10%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAY 150
           + N I+SL  +  ++ S D++        T S D  +KL +V         V     H  
Sbjct: 3   SINLIKSLKLYKEKIWSFDFSQ---GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK 59

Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILACDWNKY 203
            + +  W P H+ +  + S D T+ IW          EM    II  HE E+    W+  
Sbjct: 60  AIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-N 117

Query: 204 DDCLIASASVDKSIKIWDV---RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
           D   +A+ S DKS+ IW+          I+VL  H   V+ V + P    LLAS SYD T
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDT 176

Query: 261 VCLWD 265
           V +W 
Sbjct: 177 VRIWK 181

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  125 bits (315), Expect = 1e-33
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 23/223 (10%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALP-PTANPIRSLHEHTREVHSADYNPTR 118
           + V  +AWS  +D   +A    D SV I++T         I  L EH+++V    ++P+ 
Sbjct: 108 NEVKGVAWS--NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165

Query: 119 RDSFITSSWDDTVKLWTV--DRPTSVRTFKEHAYCVYNATWNP-RHSDVFCSASGDCTLR 175
                +SS+DDTV++W    D    V     H   V+++ ++        CS S D T+R
Sbjct: 166 A-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224

Query: 176 IWDV-------REMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN-- 224
           +W         ++      I    H+ ++    W    + LIAS   D  + +++  +  
Sbjct: 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGE 282

Query: 225 -YRVPIAVLNGHGYAVRKVK-FSPHRRNLLASCSYDMTVCLWD 265
                   L    Y +  VK    + + +LA+   D  V  W 
Sbjct: 283 WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  124 bits (314), Expect = 2e-33
 Identities = 52/274 (18%), Positives = 102/274 (37%), Gaps = 32/274 (11%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTA----LPPTANPIRSLHEHTREVHSADYN 115
             +  +AW     + L+A    D +V I+            + +  +  H  EV    ++
Sbjct: 59  KAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116

Query: 116 PTRRDSFITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGD 171
                   T S D +V +W  D        +   +EH+  V +  W+P    +  S+S D
Sbjct: 117 NDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYD 174

Query: 172 CTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDD--CLIASASVDKSIKIWDVRN--- 224
            T+RIW     +     ++  HE  + + D++K  +    + S S D ++++W       
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDE 233

Query: 225 -----YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF----MVEDALVGR 275
                +     + + H   V  V +  +   L+AS   D  + +++         A    
Sbjct: 234 DDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRAL 291

Query: 276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
                E  V   + +  + +LA+ G D +V  W 
Sbjct: 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 23/179 (12%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W       L+A +  D +V+I+          +  L+ H   V S+D++ T  
Sbjct: 154 QDVKHVIWH--PSEALLASSSYDDTVRIWKDY-DDDWECVAVLNGHEGTVWSSDFDKTEG 210

Query: 120 DSFITS-SWDDTVKLWTVDRPTSVRT---------FKEHAYCVYNATWNPRHSDVFCSAS 169
              + S S D TV++W                      H   VYN  W    + +  S  
Sbjct: 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIASVG 268

Query: 170 GDCTLRIWDVREMGSTMIIP-----AHEFEILACDWNKYDD-CLIASASVDKSIKIWDV 222
            D  L +++  + G   +          +EI    W + +   ++A+   D  +  W +
Sbjct: 269 ADGVLAVYEEVD-GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALP-PTANPIRSLHEHTREVHS-ADYNPTR 118
             VY++AW    + L+ +  ADG + +Y+           R+L     E++         
Sbjct: 251 RQVYNVAWG--FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG 308

Query: 119 RDSFITSSWDDTVKLWTVD 137
           +    T   D  V  W+++
Sbjct: 309 KTILATGGDDGIVNFWSLE 327

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score =  129 bits (325), Expect = 1e-34
 Identities = 47/292 (16%), Positives = 113/292 (38%), Gaps = 22/292 (7%)

Query: 2   PVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-A 60
            V +T ++      +P + + +  A+       G G   VL L         +       
Sbjct: 29  RVSQTTWDSGFCAVNPKFMALICEAS-------GGGAFLVLPLGKTGRVDKNVPLVCGHT 81

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTA----LPPTANPIRSLHEHTREVHSADYNP 116
             V D+AW   +D+++ +   D +V +++      + P   P+ +L  HT+ V    ++P
Sbjct: 82  APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP 141

Query: 117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTL 174
           T ++  +++  D+ + +W V    +V T     H   +Y+  W+     + C++  D  +
Sbjct: 142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRV 200

Query: 175 RIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIAS---ASVDKSIKIWDVRNYRVPI 229
           R+ + R+ G+ +      HE           +  ++ +      ++ + +WD ++   P+
Sbjct: 201 RVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL 259

Query: 230 AVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 280
           ++        V    F P    +      D ++  ++   E   +      +
Sbjct: 260 SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score =  101 bits (254), Expect = 1e-24
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 157 WNPRHSDVFCSASGDCTLRIWDVREMGST----MIIPAHEFEILACDWNKYDDCLIASAS 212
            NP+   + C ASG     +  + + G       ++  H   +L   W  ++D +IAS S
Sbjct: 42  VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS 101

Query: 213 VDKSIKIWDV------RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
            D ++ +W++         R P+  L GH   V  V + P  +N+L S   D  + +WD 
Sbjct: 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161

Query: 267 MVEDALVG-RYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMDPR 315
               A++    D H +    VD S   +G L+ ++  D+ V V     +PR
Sbjct: 162 GTGAAVLTLGPDVHPDTIYSVDWS--RDGALICTSCRDKRVRVI----EPR 206

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 99.4 bits (248), Expect = 7e-24
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 20/224 (8%)

Query: 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR----PTSVRTFKEHAYCVYNATW 157
           + + T +      NP        +S      +  + +      +V     H   V +  W
Sbjct: 30  VSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAW 89

Query: 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-------AHEFEILACDWNKYDDCLIAS 210
            P + +V  S S DCT+ +W++ + G  + +         H   +    W+     ++ S
Sbjct: 90  CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149

Query: 211 ASVDKSIKIWDVRNYRVPIAVL--NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV 268
           A  D  I +WDV      +  L  + H   +  V +S     L+ +   D  V + +   
Sbjct: 150 AGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRK 207

Query: 269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW----DELVYVW 308
              +  +   H E    V    + EG + +TG+    +  V +W
Sbjct: 208 GTVVAEKDRPH-EGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 37/269 (13%), Positives = 90/269 (33%), Gaps = 28/269 (10%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG----VYDL 66
             + + P  ++ +A  +        +  V V ++      L       T +G    V  +
Sbjct: 85  LDIAWCPHNDNVIASGSE-------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137

Query: 67  AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL--HEHTREVHSADYNPTRRDSFIT 124
           AW  +  ++L++A  D  + ++D     T   + +L    H   ++S D++        T
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVG---TGAAVLTLGPDVHPDTIYSVDWSRDGA-LICT 193

Query: 125 SSWDDTVKLWTVDRPTSVRTFKEHAYCVYN--ATWNP--RHSDVFCSASGDCTLRIWDVR 180
           S  D  V++    + T V              A +    +      S   +  + +WD +
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253

Query: 181 EMGSTMIIPA--HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
            +   + +        +L   ++   + +      D SI+ +++ +    +  L+     
Sbjct: 254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK 313

Query: 239 --VRKVKFSPHRRNLLASCSYDMTVCLWD 265
              R + + P R       +       + 
Sbjct: 314 ESQRGMGYMPKR---GLEVNKCEIARFYK 339

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 19/178 (10%), Positives = 53/178 (29%), Gaps = 26/178 (14%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
           YSV +S    + +  +         + RV V++         +    +   G   +    
Sbjct: 180 YSVDWSR-DGALICTSCR-------DKRVRVIEPRKGTVVAEKDRPHE---GTRPVHAVF 228

Query: 71  SHDSLLIA----AVADGSVKIYDTALPPTANPIRSLHE--HTREVHSADYNPTRRDSFIT 124
             +  ++      +++  V ++DT          SL E   +  V    ++P     ++ 
Sbjct: 229 VSEGKILTTGFSRMSERQVALWDTK---HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC 285

Query: 125 SSWDDTVKLW-TVDRPTSVRTFKEHAYC--VYNATWNPRHSDVFCSASGDCTLRIWDV 179
              D +++ +        +      +         + P+        +     R + +
Sbjct: 286 GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRG---LEVNKCEIARFYKL 340

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  127 bits (321), Expect = 1e-34
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 22/217 (10%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYD--TALPPTANPIRSLHEHTREVHSADYNPT 117
             V  LA S +    L+  A  D ++  +           P+RS   H+  V        
Sbjct: 18  GWVTSLATS-AGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA- 75

Query: 118 RRD-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
             D ++  S SWD T++LW V    + + F  H   V +   +   + +  S S D T++
Sbjct: 76  --DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIK 132

Query: 176 IWDV--REMGSTMIIPAHEFEILA-----CDWNKYDDCLIASASVDKSIKIWDVRNYRVP 228
           +W +  + +     +  H   +        +    D   I SA  DK +K W++  ++  
Sbjct: 133 VWTIKGQCLA---TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-I 188

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            A   GH   +  +  SP    L+AS   D  + LW+
Sbjct: 189 EADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWN 224

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  113 bits (285), Expect = 2e-29
 Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 26/262 (9%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V D   +   D      A  D +++++D A   T    +    H  +V S D +    
Sbjct: 66  HIVQDCTLT--ADGAYALSASWDKTLRLWDVA---TGETYQRFVGHKSDVMSVDIDKKAS 120

Query: 120 DSFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC-----SASGDCT 173
              I S S D T+K+WT+     + T   H   V      P            SA  D  
Sbjct: 121 --MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177

Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
           ++ W++ +         H   I     +  D  LIASA  D  I +W++   +  +  L+
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA-KKAMYTLS 235

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM---VEDALVGRYDHHTEFAVGVDMSV 290
                V  + FSP+R   LA+ +    + ++      + D L   +  +++ A    +S+
Sbjct: 236 AQDE-VFSLAFSPNRY-WLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292

Query: 291 LV--EG-LLASTGWDELVYVWQ 309
               +G  L +   D ++ VWQ
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQ 314

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  111 bits (280), Expect = 1e-28
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 14/177 (7%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVY 153
             +L  H   V S   +  + +  +++S D T+  W +          VR+FK H++ V 
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69

Query: 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
           + T          SAS D TLR+WDV    +      H+ ++++ D +K    +I S S 
Sbjct: 70  DCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSR 127

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD 265
           DK+IK+W ++     +A L GH   V +V+  P+ +       + S   D  V  W+
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 94.5 bits (236), Expect = 2e-22
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE-----ILA 197
            T + H   V +   +    ++  SAS D TL  W +        +P   F+     +  
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70

Query: 198 CDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY 257
           C     D     SAS DK++++WDV           GH   V  V        ++ S S 
Sbjct: 71  CTLTA-DGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSR 127

Query: 258 DMTVCLWDFMVEDALVGRYDHHTEFAVGV----DMSVLVEG-LLASTGWDELVYVW 308
           D T+ +W   ++   +     H ++   V    +     +   + S G D++V  W
Sbjct: 128 DKTIKVWT--IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 61  DGVYDLAWS----ESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115
           D V  +          DS+ I  A  D  VK ++               H   +++   +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---QFQIEADFIGHNSNINTLTAS 205

Query: 116 PTRRD-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173
           P   D + I S   D  + LW +    ++ T       V++  ++P +     +A+    
Sbjct: 206 P---DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NRYWLAAAT-ATG 259

Query: 174 LRIWDV--REMGSTMIIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
           ++++ +  + +   +         A E   ++  W+  D   + +   D  I++W V
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV 315

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH----HTEFAV 284
              L GH   V  +  S  + NLL S S D T+  W    +D   G        H+    
Sbjct: 10  RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69

Query: 285 GVDMSVLVEG-LLASTGWDELVYVW 308
              ++   +G    S  WD+ + +W
Sbjct: 70  DCTLT--ADGAYALSASWDKTLRLW 92

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  129 bits (326), Expect = 1e-34
 Identities = 62/328 (18%), Positives = 110/328 (33%), Gaps = 49/328 (14%)

Query: 11  YSVKFSPFYESRLA------------VATAQNFGILGNGRVHVLDLSPAAPALTELVAFD 58
            S  ++P  ES LA            +      G        + +L              
Sbjct: 49  VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK-- 106

Query: 59  TADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
           T + V  LAWS  HD   I   V +G +++++     T   +  L+ H   + S  +N  
Sbjct: 107 TTNQVTCLAWS--HDGNSIVTGVENGELRLWNK----TGALLNVLNFHRAPIVSVKWNK- 159

Query: 118 RRDS--FITSSWDDTVKLWTVDRPTSVRTFKEH---AYCVYNATWNPRHSDV-------- 164
             D    I+   ++   LW V   T ++ F+        +     +   S          
Sbjct: 160 --DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217

Query: 165 --FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
             F        + ++ + E   T  +  H   I   ++N   + L+ SAS D +++IW  
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHG 276

Query: 223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTE 281
            N         GH  ++    +    +  + SCS D +V LW   ++   L+        
Sbjct: 277 GNGN-SQNCFYGHSQSIVSASWVGDDK--VISCSMDGSVRLWS--LKQNTLLALSIVDGV 331

Query: 282 FAVGVDMSVLVEG-LLASTGWDELVYVW 308
                 +S   +G   A    D  V V+
Sbjct: 332 PIFAGRISQ--DGQKYAVAFMDGQVNVY 357

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  126 bits (319), Expect = 1e-33
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 13/222 (5%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
               D+ W    D   +     G++ +Y         P   L  H   +   ++N T + 
Sbjct: 207 SLGVDVEWV--DDDKFVIPGPKGAIFVYQIT---EKTPTGKLIGHHGPISVLEFNDTNK- 260

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTLRIWD 178
             +++S D T+++W      S   F  H+  + +A+W    +      S S D ++R+W 
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK----VISCSMDGSVRLWS 316

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
           +++     +       I A   ++ D    A A +D  + ++D++        L G+   
Sbjct: 317 LKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 280
           +      P   +  +S   D    L      + +   Y    
Sbjct: 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE 417

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 94.6 bits (236), Expect = 5e-22
 Identities = 29/242 (11%), Positives = 68/242 (28%), Gaps = 50/242 (20%)

Query: 102 LHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160
             E        +      D+    S DD    +  +               + ++TWNP 
Sbjct: 6   AGEDGASTVERETQED--DTNSIDSSDDLDGFVKILKEIV-------KLDNIVSSTWNPL 56

Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY----------------- 203
              +      +   R+  + E          +  I+A   + +                 
Sbjct: 57  DESILAYGEKNSVARLARIVE-TDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115

Query: 204 ---DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
              D   I +   +  +++W+       + VLN H   +  VK++      + S   +  
Sbjct: 116 WSHDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENV 172

Query: 261 VCLWDFMVED-ALVGRYDHHTEFAVGV-------------DMSVLVEGLLASTGWDELVY 306
             LW+  V    ++  ++        +             D+  + +      G    ++
Sbjct: 173 TILWN--VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230

Query: 307 VW 308
           V+
Sbjct: 231 VY 232

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 36/287 (12%), Positives = 77/287 (26%), Gaps = 56/287 (19%)

Query: 58  DTADGVYDLAWSESHDSLL-IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP 116
           +      +    E   + +  +   DG VKI                     + S+ +NP
Sbjct: 8   EDGASTVERETQEDDTNSIDSSDDLDGFVKILKE------------IVKLDNIVSSTWNP 55

Query: 117 TRRDSFITSSWDDTVKLWTVD--------------------RPTSVRTFKEHAYCVYNAT 156
                      +   +L  +                           +  +    V    
Sbjct: 56  LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115

Query: 157 WNPRHSDVFCSASGDCTLRIWDV-REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
           W+    +   +   +  LR+W+    + + +    H   I++  WNK D   I S  V+ 
Sbjct: 116 WSH-DGNSIVTGVENGELRLWNKTGALLNVLN--FHRAPIVSVKWNK-DGTHIISMDVEN 171

Query: 216 SIKIWDVRNYRVPIAVLNGH---GYAVRKVKFSPHRRNL----------LASCSYDMTVC 262
              +W+V +    +         G ++     S                         + 
Sbjct: 172 VTILWNVIS-GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230

Query: 263 LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
           ++  + E    G+   H      ++ +      LL S   D  + +W
Sbjct: 231 VYQ-ITEKTPTGKLIGHHGPISVLEFN--DTNKLLLSASDDGTLRIW 274

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  131 bits (330), Expect = 4e-34
 Identities = 64/288 (22%), Positives = 113/288 (39%), Gaps = 36/288 (12%)

Query: 54  LVAFDTA--DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVH 110
           +V    A  + ++D      +    +A   +D ++KI++     T   I +L  H   V 
Sbjct: 1   MVVIANAHNELIHDAVLD--YYGKRLATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPVW 57

Query: 111 SADYNPTRRDSFITS-SWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS-DVFC 166
             D+   +  + + S S+D  V +W  +  R + +     H+  V +  W P     +  
Sbjct: 58  RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 117

Query: 167 SASGDCTLRIWDVREMG--STMIIPAHEFEILACDWN------------KYDDCLIASAS 212
            AS D  + + + +E G  S +II AH   + +  W               +     +  
Sbjct: 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177

Query: 213 VDKSIKIWDVRN---YRVPIAVLNGHGYAVRKVKFSP--HRRNLLASCSYDMTVCLWDFM 267
            D  +KIW   +     V  + L GH   VR V +SP    R+ LAS S D T  +W   
Sbjct: 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237

Query: 268 VED----ALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQ 310
            E       + + +   +       S+   G +LA +G D  V +W++
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKE 283

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  100 bits (250), Expect = 1e-23
 Identities = 37/245 (15%), Positives = 70/245 (28%), Gaps = 39/245 (15%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W+      L+  A +DG V + +            +  H   V+SA + P   
Sbjct: 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATI 158

Query: 120 DS------------FITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNP--RH 161
           +             F+T   D+ VK+W  +          T + H+  V +  W+P    
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218

Query: 162 SDVFCSASGDCTLRIWDV-----REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
                S S D T  IW           + +        +    W+     ++A +  D  
Sbjct: 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNK 277

Query: 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY 276
           + +W              H                  S     T   +D   ++ +   +
Sbjct: 278 VTLWKENLEGKWEPAGEVHQGGG-------------GSGGGGATSKEFDGPCQNEIDLLF 324

Query: 277 DHHTE 281
               +
Sbjct: 325 SECND 329

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 96.9 bits (241), Expect = 2e-22
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACD 199
           V     H   +++A  +  +     + S D T++I++V      +I     HE  +   D
Sbjct: 2   VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60

Query: 200 WNKYDDC-LIASASVDKSIKIWDVRN-YRVPIAVLNGHGYAVRKVKFSPHRR-NLLASCS 256
           W       ++AS S D  + IW   N     IAV   H  +V  V+++PH    LL   S
Sbjct: 61  WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120

Query: 257 YDMTVCLWDFM-VEDALVGRYDHHTE------FAVGVDMSVLVEG------LLASTGWDE 303
            D  V + +F           D H        +A                    + G D 
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180

Query: 304 LVYVWQQGMDPR 315
           LV +W+   D +
Sbjct: 181 LVKIWKYNSDAQ 192

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 82.7 bits (204), Expect = 1e-17
 Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 26/234 (11%)

Query: 55  VAFDTADGVYDLAWSESHDSLLIA-AVADGSVKIYDTAL-PPTANPIRSLHEHTREVHSA 112
            ++  A    D   + + +S       AD  VKI+       T     +L  H+  V   
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210

Query: 113 DYNPTRRDSFI--TSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVF 165
            ++PT        + S D T  +WT D         +   ++    ++ A+W+   + V 
Sbjct: 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VL 269

Query: 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY 225
             + GD  + +W     G                          S     + K +D    
Sbjct: 270 ALSGGDNKVTLWKENLEGKWEPAGEVHQ------------GGGGSGGGGATSKEFDGPCQ 317

Query: 226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
                + +     +   K     R      +   T   +               
Sbjct: 318 NEIDLLFSECNDEIDNAKLIMKERRF----TASYTFAKFSTGSMLLTKDIVGKS 367

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score =  127 bits (320), Expect = 4e-34
 Identities = 48/337 (14%), Positives = 104/337 (30%), Gaps = 48/337 (14%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDL-SPAAPALTELVAFDTADGVYDLAWS 69
           +  K+ P   ++            G G + + ++       L E+            A S
Sbjct: 22  FDCKWVPC-SAKFVTMGNF---ARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS 77

Query: 70  ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS-----FIT 124
                 L      G++ I++   P    P+ S+  H   +++ D              +T
Sbjct: 78  -LQQRYLATGDFGGNLHIWNLEAP--EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134

Query: 125 SSWDDTVKLWTV----DRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLR 175
            S D TVK+W      D   ++   +           +   +N     V C+   +  ++
Sbjct: 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIK 193

Query: 176 IWDVREMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYRVP----I 229
           ++D+R   +       +  + + ++         + + S++    ++D+R          
Sbjct: 194 LFDLR-NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252

Query: 230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH----------- 278
                H   V +V+  P  R L  +      + LW +        +              
Sbjct: 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312

Query: 279 -------HTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
                   T+    +D S    GL   + +D+ V V 
Sbjct: 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score =  105 bits (265), Expect = 2e-26
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 36/237 (15%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALP-PTANPIRSLHEHTRE-----VHSAD 113
           DG+  L       +  I     DG+VK++D          +  +    +           
Sbjct: 118 DGIGGLGIG--EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175

Query: 114 YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGD 171
           YN   R        +  +KL+ + R  ++R        V +  ++      +   + S +
Sbjct: 176 YNQEER-VVCAGYDNGDIKLFDL-RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE 233

Query: 172 CTLRIWDVREMGSTM-----IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
               ++D+R    T         AH+  +        +  L  +A     + +W      
Sbjct: 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293

Query: 227 V------------------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                               +  +      +  + +SP +R L    S+D TV +  
Sbjct: 294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 24/181 (13%), Positives = 62/181 (34%), Gaps = 31/181 (17%)

Query: 71  SHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP--TRRDSFITSSW 127
           + +  ++ A   +G +K++D         +R        V S +++      +  + +S 
Sbjct: 177 NQEERVVCAGYDNGDIKLFDLR----NMALRWETNIKNGVCSLEFDRKDISMNKLVATSL 232

Query: 128 DDTVKLWTVD-----RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
           +    ++ +      +  +  + K H   V+     P++ ++F +A G   L +W     
Sbjct: 233 EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292

Query: 183 GSTMIIPA-------------------HEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
                  +                       I + DW+     L   +S D+++++  V 
Sbjct: 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352

Query: 224 N 224
            
Sbjct: 353 K 353

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  125 bits (317), Expect = 2e-33
 Identities = 40/276 (14%), Positives = 81/276 (29%), Gaps = 40/276 (14%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           D                     +G +K+ D+              H  E+    + P   
Sbjct: 98  DYTAVDTAK--LQMRRFILGTTEGDIKVLDSN---FNLQREIDQAHVSEITKLKFFP--- 149

Query: 120 DS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
                I+SS D  +K+W+V   ++ RT   H   V +     R      SAS D T+R+W
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLW 208

Query: 178 DVR------------------------EMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
           +                                +      +    ++       + +  V
Sbjct: 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHV 267

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV 273
              I + +V +    I + +    +   +    +  N + +   +  +  WD    +  V
Sbjct: 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV 327

Query: 274 GR-YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           G    +       V  +     L  S+G+D  + + 
Sbjct: 328 GEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLD 361

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  119 bits (301), Expect = 6e-31
 Identities = 29/265 (10%), Positives = 77/265 (29%), Gaps = 38/265 (14%)

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS--FITSSW 127
                 +  A  DG   +++T      +  + L +                   FI  + 
Sbjct: 65  EKVGSHLYKARLDGHDFLFNTI---IRDGSKML-KRADYTAVDTAKL---QMRRFILGTT 117

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
           +  +K+   +        + H   +    + P   +   S+S D  L+IW V++  +   
Sbjct: 118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRT 176

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH------------ 235
           +  H   +            + SAS+D +I++W+       I   N              
Sbjct: 177 LIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIAL 234

Query: 236 ------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA 283
                             ++F  + +  + +      + + +   ++  +      T   
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC 293

Query: 284 VGVDMSVLVEGLLASTGWDELVYVW 308
             + +       + +   + ++  W
Sbjct: 294 NSLTVDGNNANYIYAGYENGMLAQW 318

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 31/243 (12%), Positives = 70/243 (28%), Gaps = 46/243 (18%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHT------------- 106
             V D+A         +  A  DG++++++     T   I + +                
Sbjct: 182 ATVTDIAII--DRGRNVLSASLDGTIRLWECG---TGTTIHTFNRKENPHDGVNSIALFV 236

Query: 107 ---REVHSADYNPTRRDSF-------ITSSWDDTVKLWTVDRPTSV-RTFKEHAYCVYNA 155
              R++H    +      F       I       + +  V       +   +      + 
Sbjct: 237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296

Query: 156 TWNPRHSDVFCSASGDCTLRIWDVR--EMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
           T +  +++   +   +  L  WD+R  E      +      I    +      L  S+  
Sbjct: 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGF 354

Query: 214 DKSIKIWDVRNYRVP--------IAVLNGHGYAVRKVKFSPHRRN---LLASCSYDMTVC 262
           D SIK+  + +               L  +  AV +  +     +   +L     +    
Sbjct: 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN-FCA 413

Query: 263 LWD 265
           L++
Sbjct: 414 LYN 416

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 14/182 (7%), Positives = 47/182 (25%), Gaps = 28/182 (15%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTR 118
               +L +        + A    G + +++     +      L    T   +S   +   
Sbjct: 248 SKKNNLEFG--TYGKYVIAGHVSGVITVHNVF---SKEQTIQLPSKFTCSCNSLTVDGNN 302

Query: 119 RDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTL 174
            +       +  +  W +                 + N  +         F S+  D ++
Sbjct: 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGAL----FVSSGFDTSI 358

Query: 175 RIWDVREMGSTMIIPAHEFEILACDWN------------KYDDCLIASASVDKSIKIWDV 222
           ++  + +  S       E        +            + +  ++     +    ++++
Sbjct: 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK-NNFCALYNL 417

Query: 223 RN 224
            N
Sbjct: 418 SN 419

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 6/107 (5%), Positives = 27/107 (25%), Gaps = 11/107 (10%)

Query: 167 SASGDCTLRIWDVRE------MGSTMIIPAHEFEILACDWNKY--DDCLIASASVDKSIK 218
             + +     +   +          +++  +   + A   N +      +  A +D    
Sbjct: 22  EENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDF 81

Query: 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           +++        + +                R      + +  + + D
Sbjct: 82  LFNTIIRD--GSKMLKRADYTAVDTAKLQMR-RFILGTTEGDIKVLD 125

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 11/118 (9%), Positives = 29/118 (24%), Gaps = 20/118 (16%)

Query: 203 YDDCLIASASVDKSIKIW-----DVRNYRVPIAVLNGHG---YAVRKVKFSPHRRNLLAS 254
           YD   +   + +   + +     ++   +    V+ G+     A +   F       L  
Sbjct: 15  YDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGS-HLYK 73

Query: 255 CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV----DMSVLVEGLLASTGWDELVYVW 308
              D    L++         +     ++         M             +  + V 
Sbjct: 74  ARLDGHDFLFN--TIIRDGSKMLKRADYTAVDTAKLQMR-----RFILGTTEGDIKVL 124

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  123 bits (311), Expect = 4e-33
 Identities = 58/283 (20%), Positives = 88/283 (31%), Gaps = 42/283 (14%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           D ++D      +    +A   +D SVKI+D         I  L  H   V    +     
Sbjct: 14  DMIHDAQMD--YYGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMY 70

Query: 120 DSFITS-SWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS-DVFCSASGDCTLR 175
            + + S S+D  V +W  +            H   V +  W P     +    S D  + 
Sbjct: 71  GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130

Query: 176 IWDVR---EMGSTMIIPAHEFEILACDWN----------------KYDDCLIASASVDKS 216
           +       +     I  AH     A  W                        AS   D  
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190

Query: 217 IKIWDVRNYR--VPIAVLNGHGYAVRKVKFSP---HRRNLLASCSYDMTVCLWDFMVEDA 271
           IK+W             L  H   VR V ++P      + +ASCS D  V +W    +DA
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT--CDDA 248

Query: 272 LVGRY-----DHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
               +         +    V  S+     +LA +G D  V +W
Sbjct: 249 SSNTWSPKLLHKFNDVVWHVSWSI--TANILAVSGGDNKVTLW 289

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  109 bits (274), Expect = 6e-28
 Identities = 47/237 (19%), Positives = 72/237 (30%), Gaps = 36/237 (15%)

Query: 61  DGVYDLAWSESHD---SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
             V+ +AW+  H    ++L +   D  V I+      T         H   V+S  + P 
Sbjct: 58  GPVWQVAWA--HPMYGNILASCSYDRKVIIWREE-NGTWEKSHEHAGHDSSVNSVCWAPH 114

Query: 118 RRDSFITS-SWDDTVKLWTVD---RPTSVRTFKEHAYCVYNATWNP-------------- 159
                +   S D  + L T     +    +    H       +W P              
Sbjct: 115 DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174

Query: 160 --RHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDW---NKYDDCLIASA 211
              +   F S   D  +++W   E G         AH   +    W          IAS 
Sbjct: 175 KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234

Query: 212 SVDKSIKIWDVRNYRVP---IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           S D  + IW   +         +L+     V  V +S    N+LA    D  V LW 
Sbjct: 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT-ANILAVSGGDNKVTLWK 290

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  101 bits (254), Expect = 5e-25
 Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 39/248 (15%)

Query: 97  NPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVY 153
           + I ++   H   +H A  +        T S D +VK++ V       +   + H   V+
Sbjct: 3   SVINTVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW 61

Query: 154 NATWNP-RHSDVFCSASGDCTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDD-CLIA 209
              W    + ++  S S D  + IW         +     H+  + +  W  +D   ++A
Sbjct: 62  QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA 121

Query: 210 SASVDKSIKIWDVRN--YRVPIAVLNGHGYAVRKVKFSP----------------HRRNL 251
             S D +I +             + N H      V ++P                +    
Sbjct: 122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR 181

Query: 252 LASCSYDMTVCLWDF------MVEDALVGRYDHHTEFAVGVDMS--VLVEG-LLASTGWD 302
            AS   D  + LW          E  L      H+++   V  +  + +    +AS   D
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEA----HSDWVRDVAWAPSIGLPTSTIASCSQD 237

Query: 303 ELVYVWQQ 310
             V++W  
Sbjct: 238 GRVFIWTC 245

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 95.8 bits (239), Expect = 6e-23
 Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 29/213 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W+     L++A   +DG++ +            +  + HT   ++  + P   
Sbjct: 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163

Query: 120 DS----------------FITSSWDDTVKLWTVD---RPTSVRTFKEHAYCVYNATWNP- 159
                             F +   D+ +KLW  +   +    +  + H+  V +  W P 
Sbjct: 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223

Query: 160 --RHSDVFCSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDCLIASASV 213
               +    S S D  + IW   +  S    P         +    W+     ++A +  
Sbjct: 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGG 282

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246
           D  + +W   +       ++        V  S 
Sbjct: 283 DNKVTLWKE-SVDGQWVCISDVNKGQGSVSASV 314

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  123 bits (311), Expect = 6e-33
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 10/202 (4%)

Query: 72  HDSLLIA-AVADGSVKIYDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
           H     +  V  G+  +Y  ++         +L  H   V      P   D  +++S D 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDK 61

Query: 130 TVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS 184
           T+ +W + R  +      R  + H++ V +   +        S S D TLR+WD+    +
Sbjct: 62  TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTT 120

Query: 185 TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244
           T     H  ++L+  ++  D+  I S S DK+IK+W+             H   V  V+F
Sbjct: 121 TRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179

Query: 245 SP-HRRNLLASCSYDMTVCLWD 265
           SP     ++ SC +D  V +W+
Sbjct: 180 SPNSSNPIIVSCGWDKLVKVWN 201

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  122 bits (308), Expect = 1e-32
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 14/212 (6%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYD--TALPPTANPIRSLHEHTREVHSADYNPTR 118
             V  +A +     ++++A  D ++ ++           P R+L  H+  V     +   
Sbjct: 39  GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-- 96

Query: 119 RD-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
            D  F  S SWD T++LW +   T+ R F  H   V +  ++   +    S S D T+++
Sbjct: 97  -DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKL 154

Query: 177 WDVREMGS-TMIIPAHEFEILACDWNKYD--DCLIASASVDKSIKIWDVRNYRVPIAVLN 233
           W+   +   T+   +H   +    ++  +  + +I S   DK +K+W++ N +       
Sbjct: 155 WNTLGVCKYTVQDESHSEWVSCVRFSP-NSSNPIIVSCGWDKLVKVWNLANCK-LKTNHI 212

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           GH   +  V  SP    L AS   D    LWD
Sbjct: 213 GHTGYLNTVTVSPDGS-LCASGGKDGQAMLWD 243

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  102 bits (258), Expect = 2e-25
 Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 29/263 (11%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V D+  S   D         DG+++++D     T    R    HT++V S  ++   R
Sbjct: 87  HFVSDVVIS--SDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTKDVLSVAFSSDNR 141

Query: 120 DSFITS-SWDDTVKLWTVDRPTSV-RTFKEHAYCVYNATWNP--RHSDVFCSASGDCTLR 175
              I S S D T+KLW            + H+  V    ++P   +  +  S   D  ++
Sbjct: 142 --QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV-SCGWDKLVK 198

Query: 176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
           +W++           H   +     +  D  L AS   D    +WD+      +  L+G 
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGG 256

Query: 236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWD--------FMVEDALVGRYDHHTEFAVGVD 287
              +  + FSP+R   L + +   ++ +WD         + ++ +             + 
Sbjct: 257 DI-INALCFSPNRY-WLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313

Query: 288 MSVLVEG-LLASTGWDELVYVWQ 309
            S   +G  L +   D LV VWQ
Sbjct: 314 WS--ADGQTLFAGYTDNLVRVWQ 334

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 26/176 (14%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           + V  + +S +  + +I     D  VK+++ A         +   HT  +++   +P   
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA---NCKLKTNHIGHTGYLNTVTVSP--- 225

Query: 120 D-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLR 175
           D S   S   D    LW ++    + T       +    ++P   +    C+A+   +++
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP---NRYWLCAAT-GPSIK 280

Query: 176 IWDV---------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
           IWD+         ++   +    A   +  +  W+  D   + +   D  +++W V
Sbjct: 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS-ADGQTLFAGYTDNLVRVWQV 335

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 70.2 bits (173), Expect = 7e-14
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 207 LIASASVDKSIKIWDVRNY---RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL 263
             +S     +  ++              L GH   V ++  +P   +++ S S D T+ +
Sbjct: 6   HHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM 65

Query: 264 WDFMVEDALVGRYDH----HTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
           W    ++   G        H+ F   V +S   +G    S  WD  + +W
Sbjct: 66  WKLTRDETNYGIPQRALRGHSHFVSDVVIS--SDGQFALSGSWDGTLRLW 113

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  123 bits (311), Expect = 1e-32
 Identities = 42/282 (14%), Positives = 93/282 (32%), Gaps = 48/282 (17%)

Query: 61  DGVYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             +  + ++   +  L+ + + D S  ++ +        + +L  HT  + S D +    
Sbjct: 33  RPLTQVKYN--KEGDLLFSCSKDSSASVWYSL---NGERLGTLDGHTGTIWSIDVDC--- 84

Query: 120 DS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-----C 172
            +   +T S D ++KLW V     V T+K     V    ++P   + F +   +      
Sbjct: 85  FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSP-CGNYFLAILDNVMKNPG 142

Query: 173 TLRIWDVREMGSTMIIPAHEFE-------------ILACDWNKYDDCLIASASVDKSIKI 219
           ++ I+++    +T  +     E                  W+      I +   D  I  
Sbjct: 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISK 201

Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDH 278
           +DV N    +  ++ H  ++  ++FSP       + S D    L D  V    ++ +Y+ 
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVD--VSTLQVLKKYET 258

Query: 279 HTE------------FAVGVDMSVLVEGLLASTGWDELVYVW 308
                            +G           ++         +
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  103 bits (260), Expect = 1e-25
 Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 36/258 (13%)

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS--FITSSWD 128
           SH              +Y      +      L  H R +    YN    +     + S D
Sbjct: 4   SHHH----HHHSSGENLYFQG---SHMKAIKLTGHERPLTQVKYNK---EGDLLFSCSKD 53

Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
            +  +W       + T   H   +++   +   +    + S D ++++WDV   G  +  
Sbjct: 54  SSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV-SNGQCVAT 111

Query: 189 PAHEFEILACDWNKYDDCLIASAS-----VDKSIKIWDVRN----------YRVPIAVLN 233
                 +   +++        +          SI I+++               PI  + 
Sbjct: 112 WKSPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170

Query: 234 GHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL 291
            H    A     +S   +  + +   D  +  +D       V   D H +    +  S  
Sbjct: 171 THEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-- 227

Query: 292 VEG-LLASTGWDELVYVW 308
            +     ++  D   ++ 
Sbjct: 228 PDLTYFITSSRDTNSFLV 245

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  103 bits (259), Expect = 2e-25
 Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 53/282 (18%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLS----------PAAPALTELVAFDTA 60
             V+FSP   +             G+  +++ ++            +   + +++  +  
Sbjct: 119 KRVEFSP-CGNYFLAILDNVMKNPGS--INIYEIERDSATHELTKVSEEPIHKIITHEGL 175

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP-IRSLHEHTREVHSADYNPTRR 119
           D      WS +    +IA   DG +  YD +        + S+  H + +    ++P   
Sbjct: 176 DAATVAGWS-TKGKYIIAGHKDGKISKYDVS---NNYEYVDSIDLHEKSISDMQFSPDLT 231

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
             FITSS D    L  V     ++ ++     +  A   P    +     G     +   
Sbjct: 232 -YFITSSRDTNSFLVDVSTLQVLKKYETDCP-LNTAVITPLKEFII-LGGGQEAKDVTT- 287

Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
                                        ++       + +    +   I  + GH   +
Sbjct: 288 ----------------------------TSANEGKFEARFYHK-IFEEEIGRVQGHFGPL 318

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 281
             V  SP      AS   D  + L  F  +     +YD    
Sbjct: 319 NTVAISPQGT-SYASGGEDGFIRLHHFE-KSYFDFKYDVEKA 358

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =   99 bits (250), Expect = 4e-24
 Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 44/281 (15%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             ++ +       +       AD S+K++D +       + +       V   +++P   
Sbjct: 75  GTIWSIDVD--CFTKYCVTGSADYSIKLWDVS---NGQCVATWKSPV-PVKRVEFSPCGN 128

Query: 120 D----SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD-VFC-------- 166
                         ++ ++ ++R ++     + +    +        D            
Sbjct: 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188

Query: 167 ---SASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
              +   D  +  +DV      +  I  HE  I    ++  D     ++S D +  + DV
Sbjct: 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDV 247

Query: 223 RNYRVPIAVLNGHGYAVRKVKFSP-------------HRRNLLASCSYDMTVCLWDFMVE 269
              +V +         +     +P                   ++         +  + E
Sbjct: 248 STLQV-LKKYETDC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305

Query: 270 DALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
           +  +GR   H      V +S   +G   AS G D  + +  
Sbjct: 306 E-EIGRVQGHFGPLNTVAISP--QGTSYASGGEDGFIRLHH 343

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  122 bits (309), Expect = 6e-32
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 33/227 (14%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
            GV+ L ++  H  +L++   D +V+++D               H   V   D    +  
Sbjct: 163 GGVWALKYA--HGGILVSGSTDRTVRVWDIK---KGCCTHVFEGHNSTVRCLDIVEYKNI 217

Query: 121 SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR-----------HSD-VFC- 166
            +I + S D+T+ +W + + +SV       +        P            H   V   
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276

Query: 167 --------SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
                   S S D TL +WDV +M    I+  H   I +  ++ ++     SAS+D +I+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIR 335

Query: 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           IWD+ N    +  L GH   V  ++ S      L S + D ++  WD
Sbjct: 336 IWDLEN-GELMYTLQGHTALVGLLRLSDKF---LVSAAADGSIRGWD 378

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  108 bits (271), Expect = 1e-26
 Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 17/203 (8%)

Query: 68  WSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS 126
            + S    ++     D ++ ++D A       +  L  HT  ++S  Y+  R+   I++S
Sbjct: 274 RTVSGHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDHERK-RCISAS 329

Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186
            D T+++W ++    + T + H   V     + +      SA+ D ++R WD     S  
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF---LVSAAADGSIRGWDA-NDYSRK 385

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246
               H        +    D ++ S S +    I+++R+ ++  A +      +  V F  
Sbjct: 386 FSYHHTNLSAITTFY-VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 443

Query: 247 HRRNLLASCSYDM---TVCLWDF 266
                L +         + + DF
Sbjct: 444 KT---LVAAVEKDGQSFLEILDF 463

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  100 bits (252), Expect = 4e-24
 Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDT------------------ALPPTANP--I 99
             V  L   E  +   I     D ++ ++                       P  NP  +
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263

Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
             L  H   V +   +       ++ S+D+T+ +W V +   +     H   +Y+  ++ 
Sbjct: 264 GVLRGHMASVRTVSGHGNI---VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320

Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
                  SAS D T+RIWD+        +  H   +         D  + SA+ D SI+ 
Sbjct: 321 E-RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR---LSDKFLVSAAADGSIRG 376

Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           WD  +Y         H        F      +L S S +    +++
Sbjct: 377 WDANDYSRK--FSYHHTNLSAITTFYVSDN-ILVSGS-ENQFNIYN 418

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 98.5 bits (246), Expect = 3e-23
 Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 33/219 (15%)

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
             D L ++       +K +    P       +L  H   V +           IT + D 
Sbjct: 87  QQDRLRLSFLENIFILKNWYN--PKFVPQRTTLRGHMTSVITCLQFEDNY--VITGADDK 142

Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
            ++++       +     H   V+   +      +  S S D T+R+WD+++   T +  
Sbjct: 143 MIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFE 200

Query: 190 AHEFEILACDWNKY-DDCLIASASVDKSIKIWDVR----------------------NYR 226
            H   +   D  +Y +   I + S D ++ +W +                          
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260

Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
             + VL GH  +VR V  S H   ++ S SYD T+ +WD
Sbjct: 261 YFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWD 296

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 125 SSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS 184
           S W   +       P    +        Y                    L+ W   +   
Sbjct: 54  SLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQ-DRLRLSFLENIFILKNWYNPKFVP 112

Query: 185 TMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK 243
               +  H   ++ C    ++D  + + + DK I+++D  N +  +  L+GH   V  +K
Sbjct: 113 QRTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALK 169

Query: 244 FSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEG-LLASTGW 301
           ++      L S S D TV +WD  ++       ++ H      +D+        + +   
Sbjct: 170 YAHGGI--LVSGSTDRTVRVWD--IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 225

Query: 302 DELVYVW 308
           D  ++VW
Sbjct: 226 DNTLHVW 232

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  121 bits (306), Expect = 1e-31
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 30/245 (12%)

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
            +D   I   + D ++KI+D     T    R L  HT  V    Y+       IT S D 
Sbjct: 140 QYDDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTGSVLCLQYDERV---IITGSSDS 193

Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV---REMGSTM 186
           TV++W V+    + T   H   V +  +N        + S D ++ +WD+    ++    
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM---MVTCSKDRSIAVWDMASPTDITLRR 250

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246
           ++  H   +   D   +DD  I SAS D++IK+W+       +  LNGH   +  +++  
Sbjct: 251 VLVGHRAAVNVVD---FDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR- 305

Query: 247 HRRNLLASCSYDMTVCLWDFM---VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE 303
               L+ S S D T+ LWD         L G    H E    +         + S  +D 
Sbjct: 306 --DRLVVSGSSDNTIRLWDIECGACLRVLEG----HEELVRCIRFD---NKRIVSGAYDG 356

Query: 304 LVYVW 308
            + VW
Sbjct: 357 KIKVW 361

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  113 bits (284), Expect = 1e-28
 Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 23/214 (10%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           + V  L ++   + +++    D S+ ++D A P      R L  H   V+  D++     
Sbjct: 214 EAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-- 268

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
             +++S D T+K+W       VRT   H   +    +  R      S S D T+R+WD+ 
Sbjct: 269 -IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDIE 324

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP--------IAVL 232
                 ++  HE  +       +D+  I S + D  IK+WD+     P        +  L
Sbjct: 325 CGACLRVLEGHEELVRCIR---FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381

Query: 233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
             H   V +++F   +   + S S+D T+ +WDF
Sbjct: 382 VEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDF 412

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 97.4 bits (243), Expect = 6e-23
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 24/184 (13%)

Query: 72  HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131
            D  +++A  D ++K+++T+   T   +R+L+ H R +    Y        ++ S D+T+
Sbjct: 265 DDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHKRGIACLQYRDRL---VVSGSSDNTI 318

Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-- 189
           +LW ++    +R  + H   V    ++ +      S + D  +++WD+         P  
Sbjct: 319 RLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDL-VAALDPRAPAG 374

Query: 190 --------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                    H   +      ++D+  I S+S D +I IWD  N             +   
Sbjct: 375 TLCLRTLVEHSGRVFRL---QFDEFQIVSSSHDDTILIWDFLNDP-AAQAEPPRSPSRTY 430

Query: 242 VKFS 245
              S
Sbjct: 431 TYIS 434

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 97.0 bits (242), Expect = 8e-23
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 14/174 (8%)

Query: 94  PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153
            +   I    E ++ V+   Y+  +    ++   D+T+K+W  +     R    H   V 
Sbjct: 121 HSLQRIHCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 177

Query: 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
              ++ R      + S D T+R+WDV        +  H   +L     ++++ ++ + S 
Sbjct: 178 CLQYDERV---IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSK 231

Query: 214 DKSIKIWDVRNYRVP--IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           D+SI +WD+ +        VL GH  AV  V F       + S S D T+ +W+
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWN 282

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  120 bits (304), Expect = 2e-31
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 8/209 (3%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
                LAW  +H S +      G + +++  +                +    +NP   +
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPLNTN 178

Query: 121 SFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
            F  SS + T +L            +         +   +   S +  +      + + +
Sbjct: 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLN 237

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP--IAVLNGHG 236
           +        +  H+ ++     N   D  +A+ASVD+++KIWD+R  R          H 
Sbjct: 238 MDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296

Query: 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           + V    FSP     L +      + ++ 
Sbjct: 297 HPVNAACFSPDGA-RLLTTDQKSEIRVYS 324

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  119 bits (299), Expect = 1e-30
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 7/175 (4%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--SVRTFKEHAYCV 152
           +   ++      R   S  ++PT   +    S    + LW        +          +
Sbjct: 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSI 167

Query: 153 YNATWNPRHSDVFCSASGDCTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDDCLIAS 210
               +NP +++ F ++S + T R+ D     +              + D +     ++ +
Sbjct: 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVT 226

Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                ++ + ++      +  L  H   V  V  +P     LA+ S D TV +WD
Sbjct: 227 GDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  110 bits (276), Expect = 1e-27
 Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 29/227 (12%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYD--TALPPTANPIRSLHEHTREVHSADYNPTR 118
             +  L ++  + +   A+  +G+ ++ D    +        S         S D + + 
Sbjct: 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV---FASSDTINIWFCSLDVSASS 221

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
           R   +T      V L  +D    +   + H   V +   NP       +AS D T++IWD
Sbjct: 222 R-MVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279

Query: 179 VR---EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
           +R      S +    H   + A  ++  D   + +      I+++           L  H
Sbjct: 280 LRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPH 337

Query: 236 G-----------------YAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                             Y +  V   P       +     T+ ++D
Sbjct: 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 99.4 bits (248), Expect = 1e-23
 Identities = 39/279 (13%), Positives = 90/279 (32%), Gaps = 43/279 (15%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
             +KF+P   ++   ++         G   + D            +         L  S 
Sbjct: 168 TGLKFNPLNTNQFYASS-------MEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVS- 218

Query: 71  SHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
              S ++      G+V + +         + +L  H ++V     NP       T+S D 
Sbjct: 219 -ASSRMVVTGDNVGNVILLNM----DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273

Query: 130 TVKLWTVDRPTSVRTF---KEHAYCVYNATWNPRHSD--VFCSASGDCTLRIWDVREMGS 184
           TVK+W + +     +F     H + V  A ++P   D     +      +R++   +   
Sbjct: 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP---DGARLLTTDQKSEIRVYSASQWDC 330

Query: 185 TMIIPAHEFE------ILACDWNKYDDC-----------LIASASVDKSIKIWDVRNYRV 227
            + +  H          +   W+   +               +    ++I ++D  + ++
Sbjct: 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390

Query: 228 PIAVLNGHGYAVRKV-KFSPHRRNLLASCSYDMTVCLWD 265
              + +     +  + +F+P     LAS      + +W 
Sbjct: 391 MCQLYDPESSGISSLNEFNPMGD-TLASAM-GYHILIWS 427

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 85.9 bits (213), Expect = 6e-19
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 59/221 (26%)

Query: 92  LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC 151
           LPP  + +R+LH+H     S                     L T+D    ++        
Sbjct: 71  LPPCRSIVRTLHQHKLGRASWPS---------VQQGLQQSFLHTLDSYRILQKAAPFDRR 121

Query: 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA 211
             +  W+P H                                              +A  
Sbjct: 122 ATSLAWHPTHPS-------------------------------------------TVAVG 138

Query: 212 SVDKSIKIWDVR-NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270
           S    I +W+     +       G G ++  +KF+P   N   + S + T  L D   + 
Sbjct: 139 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD--FKG 196

Query: 271 ALVGRYDHHTEFAVGVDMSVLV--EG-LLASTGWDELVYVW 308
            ++  +       +    S+ V     ++ +      V + 
Sbjct: 197 NILRVFASSDTINIWF-CSLDVSASSRMVVTGDNVGNVILL 236

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 24/186 (12%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
             V  +A +   D  L  A  D +VKI+D               H   V++A ++P    
Sbjct: 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA- 309

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEH------AYCVYNATWNPRHS-----------D 163
             +T+     +++++  +         H            A W+PR++            
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369

Query: 164 VFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILA-CDWNKYDDCLIASASVDKSIKIW 220
             C+     T+ ++D    G  M          I +  ++N      +ASA     I IW
Sbjct: 370 KSCTPYELRTIDVFDG-NSGKMMCQLYDPESSGISSLNEFN-PMGDTLASAM-GYHILIW 426

Query: 221 DVRNYR 226
             +  R
Sbjct: 427 SQQEAR 432

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  120 bits (302), Expect = 3e-31
 Identities = 52/286 (18%), Positives = 100/286 (34%), Gaps = 51/286 (17%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR- 119
             V  + +S  +D   +A   + + ++Y  +     + +  L + +      +   T   
Sbjct: 65  SVVCCVKFS--NDGEYLATGCNKTTQVYRVS---DGSLVARLSDDSAANKDPENLNTSSS 119

Query: 120 ---DSFITS-------------SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163
              D +I S             + D  +++W ++    V   + H   +Y+  + P   D
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGD 178

Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV- 222
              S SGD T+RIWD+   G   +  + E  +     +  D   IA+ S+D+++++WD  
Sbjct: 179 KLVSGSGDRTVRIWDL-RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237

Query: 223 -----RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD 277
                           GH  +V  V F+   +  + S S D +V LW+    +       
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKT 296

Query: 278 HHTEFAVGVDMSVLVEG---------------LLASTGWDELVYVW 308
            ++    G        G                + S   D  V  W
Sbjct: 297 PNS----GTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  115 bits (291), Expect = 8e-30
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 31/228 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALP----PTANPIRSLHEHTREVHSADYN 115
             +         DS  +  A+   +   Y    P         +    +HT  V    ++
Sbjct: 16  KPIPPFLLD--LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 73

Query: 116 PTRRD-SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD------VFC-- 166
               D  ++ +  + T +++ V   + V    + +    +       S       +    
Sbjct: 74  N---DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130

Query: 167 ---------SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
                    + + D  +RIWD+      MI+  HE +I + D+       + S S D+++
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTV 189

Query: 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           +IWD+R  +     L+     V  V  SP     +A+ S D  V +WD
Sbjct: 190 RIWDLRTGQ-CSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWD 235

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  106 bits (267), Expect = 2e-26
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 38/232 (16%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             +Y L +        +     D +V+I+D     T     +L      V +   +P   
Sbjct: 166 QDIYSLDYF--PSGDKLVSGSGDRTVRIWDLR---TGQCSLTL-SIEDGVTTVAVSPGDG 219

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKE-------HAYCVYNATWNP--RHSDVFCSASG 170
                 S D  V++W  +    V            H   VY+  +    +      S S 
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS---VVSGSL 276

Query: 171 DCTLRIWDVREMGSTMIIPA------------HEFEILACDWNKYDDCLIASASVDKSIK 218
           D ++++W+++   +                  H+  +L+      +D  I S S D+ + 
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVL 335

Query: 219 IWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR-----NLLASCSYDMTVCLWD 265
            WD ++   P+ +L GH  +V  V  +         N+ A+ S D    +W 
Sbjct: 336 FWDKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  100 bits (252), Expect = 3e-24
 Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 45/242 (18%)

Query: 98  PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-------TFKEHAY 150
           P      H++ +     +   + S   +    T   + +  P   R          +H  
Sbjct: 7   PYNQRANHSKPIPPFLLDLDSQ-SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 65

Query: 151 CVYNATWNPRHSDVFCSASG-DCTLRIWDV------------------REMGSTMIIPAH 191
            V    ++    D    A+G + T +++ V                   E  +T   P+ 
Sbjct: 66  VVCCVKFSN---DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122

Query: 192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL 251
           +  I +  ++  D   +A+ + D+ I+IWD+ N R  + +L GH   +  + + P     
Sbjct: 123 DLYIRSVCFSP-DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGD-K 179

Query: 252 LASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSV---LVEG-LLASTGWDELVY 306
           L S S D TV +WD  +                 GV  +V     +G  +A+   D  V 
Sbjct: 180 LVSGSGDRTVRIWD--LRTGQCSLTLSIED----GV-TTVAVSPGDGKYIAAGSLDRAVR 232

Query: 307 VW 308
           VW
Sbjct: 233 VW 234

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 31/188 (16%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHE-------HTREVHSA 112
           DGV  +A S   D   IAA   D +V+++D+    T   +  L         H   V+S 
Sbjct: 207 DGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSV 262

Query: 113 DYNPTRRDSFITSSWDDTVKLWTVDRPTS------------VRTFKEHAYCVYNATWNPR 160
            +    + S ++ S D +VKLW +    +              T+  H   V +      
Sbjct: 263 VFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ- 320

Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC-----DWNKYDDCLIASASVDK 215
           + +   S S D  +  WD +     +++  H   +++           +  + A+ S D 
Sbjct: 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380

Query: 216 SIKIWDVR 223
             +IW  +
Sbjct: 381 KARIWKYK 388

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 3/54 (5%)

Query: 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR 275
           + +Y VP      H   +         +  +       T   +   + +  + R
Sbjct: 1   MDHYLVPYNQRANHSKPIPPFLLDLDSQ-SVPDALKKQTNDYYI--LYNPALPR 51

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           D V  +A +   +   I     D  V  +D     + NP+  L  H   V S        
Sbjct: 311 DFVLSVATT--QNDEYILSGSKDRGVLFWDKK---SGNPLLMLQGHRNSVISVAVANGSS 365

Query: 120 DS-----FITSSWDDTVKLWTVDR 138
                  F T S D   ++W   +
Sbjct: 366 LGPEYNVFATGSGDCKARIWKYKK 389

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  117 bits (296), Expect = 8e-31
 Identities = 45/255 (17%), Positives = 81/255 (31%), Gaps = 21/255 (8%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIR--SLHEHTREVHSADYNPTR 118
           + V  +  S  + +  +     G VK++D + P   +P+           + S    P  
Sbjct: 52  EVVCAVTIS--NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-- 107

Query: 119 RDS--FITSSWDDTVKLWTVDRPT--SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTL 174
            D    I      T+ +W +  PT          A   Y    +P     F S   D  +
Sbjct: 108 -DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF-SCCSDGNI 165

Query: 175 RIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
            +WD+           H       D +  D   + +  +D +++ WD+R  R  +     
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGR-QLQQH-D 222

Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG 294
               +  + + P     LA       V +    V      +   H    + +  +    G
Sbjct: 223 FTSQIFSLGYCPTGE-WLAVGMESSNVEVLH--VNKPDKYQLHLHESCVLSLKFA--YCG 277

Query: 295 -LLASTGWDELVYVW 308
               STG D L+  W
Sbjct: 278 KWFVSTGKDNLLNAW 292

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  108 bits (272), Expect = 2e-27
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 18/209 (8%)

Query: 60  ADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
           A   Y LA S   DS +     +DG++ ++D         +R    HT      D +   
Sbjct: 141 APACYALAIS--PDSKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCIDISN-- 193

Query: 119 RDS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
            D     T   D+TV+ W +     ++   +    +++  + P    +         + +
Sbjct: 194 -DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA-VGMESSNVEV 250

Query: 177 WDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG 236
             V        +  HE  +L+  +  Y      S   D  +  W    Y   I   +   
Sbjct: 251 LHV-NKPDKYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTP-YGASIF-QSKES 306

Query: 237 YAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            +V     S   +  + + S D    +++
Sbjct: 307 SSVLSCDISVDDK-YIVTGSGDKKATVYE 334

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 88.7 bits (221), Expect = 3e-20
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 16/165 (9%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           DG   +  S  +D   +     D +V+ +D         ++  H+ T ++ S  Y PT  
Sbjct: 184 DGASCIDIS--NDGTKLWTGGLDNTVRSWDLR---EGRQLQ-QHDFTSQIFSLGYCPTGE 237

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTLRIW 177
                      V++  V++P        H  CV +  +    +    F S   D  L  W
Sbjct: 238 -WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKW---FVSTGKDNLLNAW 292

Query: 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
                G+++        +L+CD +  DD  I + S DK   +++V
Sbjct: 293 RT-PYGASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  118 bits (297), Expect = 9e-31
 Identities = 41/263 (15%), Positives = 91/263 (34%), Gaps = 40/263 (15%)

Query: 61  DGVYDLAWS-ESHD--SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP- 116
             ++ + ++  S +   L+ A V    V +Y+     +   IR L  +       ++   
Sbjct: 19  QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH---SQGEIRLLQSYVDADADENFYTC 75

Query: 117 -------TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS 169
                  T       +     +++        ++ +  H   +    ++PR  ++  S S
Sbjct: 76  AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135

Query: 170 GDCTLRIWDV---REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
            D  LR+W++     +     +  H  E+L+ D++      I S  +D S+K+W + + R
Sbjct: 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKR 194

Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV 286
             +  +           ++P++ N          +   DF   D        H  +   V
Sbjct: 195 -MMNAIKES------YDYNPNKTNRP---FISQKIHFPDFSTRDI-------HRNYVDCV 237

Query: 287 DMSVLVEG-LLASTGWDELVYVW 308
                  G L+ S   +  +  W
Sbjct: 238 RWL----GDLILSKSCENAIVCW 256

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  115 bits (289), Expect = 1e-29
 Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 47/271 (17%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           + + +L +     +LL++   D ++++++            +  H  EV SADY+     
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL---L 172

Query: 121 S--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
               ++   D ++KLW ++    +   KE         +NP   +          +   D
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESY------DYNP---NKTNRPFISQKIHFPD 223

Query: 179 VREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIWDVRNYRVP--------- 228
                ST  I  H   +    W        I S S + +I  W                 
Sbjct: 224 F----STRDI--HRNYVDCVRWLGDL----ILSKSCENAIVCWKPGKMEDDIDKIKPSES 273

Query: 229 ----IAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVED---ALVGRYDHHT 280
               +   +     +  ++FS    + +LA  +    + +WD  VED   A      HH 
Sbjct: 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333

Query: 281 EFAV--GVDMSVLVEG-LLASTGWDELVYVW 308
             A       S   +  +L +   D  ++ W
Sbjct: 334 CGAAIRQTSFS--RDSSILIAVCDDASIWRW 362

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  102 bits (256), Expect = 5e-25
 Identities = 44/290 (15%), Positives = 79/290 (27%), Gaps = 76/290 (26%)

Query: 11  YSVKFSPFYESRLA------------VATAQNFGILGNGRVHVLDLSPAAPALTELVAFD 58
             +KF P   + L             + T     I G    H                  
Sbjct: 119 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH------------------ 160

Query: 59  TADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
             D V    +        I     D S+K++      +   + ++ E        DYNP 
Sbjct: 161 -RDEVLSADYD--LLGEKIMSCGMDHSLKLWRIN---SKRMMNAIKESY------DYNP- 207

Query: 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
             +          +            T   H   V    W     D+  S S +  +  W
Sbjct: 208 --NKTNRPFISQKIHFP------DFSTRDIHRNYVDCVRWLG---DLILSKSCENAIVCW 256

Query: 178 DV--REMGSTMIIPAHEFEILACDWNKYDDC-------------LIASASVDKSIKIWDV 222
                E     I P+     +   ++                  ++A  +    + +WD+
Sbjct: 257 KPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316

Query: 223 RN---YRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267
                ++     L  H  G A+R+  FS     +L +   D ++  WD +
Sbjct: 317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRL 365

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  118 bits (297), Expect = 9e-31
 Identities = 48/231 (20%), Positives = 75/231 (32%), Gaps = 33/231 (14%)

Query: 60  ADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP-T 117
            + +   AW+   D   IA    +  V IY+ +       +  L EH  +V   D+ P +
Sbjct: 8   VEPISCHAWN--KDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDS 64

Query: 118 RRDSFITSSWDDTVKLWTVDRPT--SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
            R   +T   D    +WT+   T                  W P     F   SG   + 
Sbjct: 65  NR--IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVIS 121

Query: 176 IWDV----REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV---- 227
           I              I       +L+ DW+  +  L+A+ S D   +I+      V    
Sbjct: 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 228 -------------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                         +   +     V  V FS +    +A  S+D TVCL D
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLAD 230

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  110 bits (276), Expect = 8e-28
 Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 29/228 (12%)

Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS 162
               +    +N  R         +  V ++     +   V   KEH   V    W P  S
Sbjct: 7   LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DS 64

Query: 163 DVFCSASGDCTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIW 220
           +   +   D    +W +  R    T++I           W   ++   A  S  + I I 
Sbjct: 65  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISIC 123

Query: 221 DV---RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD 277
                 ++ V   +       V  + + P+   LLA+ S D    ++   +++ +  R  
Sbjct: 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKE-VEERPA 181

Query: 278 HHTEFAVGVDMSVLVEG-----------------LLASTGWDELVYVW 308
                +      ++ E                   +A    D  V + 
Sbjct: 182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 33/226 (14%), Positives = 61/226 (26%), Gaps = 29/226 (12%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDT---------------ALPPTANPIRSLHE 104
             V  L W    +S+L+AA   D   +I+                 +  P    +     
Sbjct: 143 STVLSLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200

Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV 164
               VH   ++          S D TV L   D+  +V T       +   T+    S V
Sbjct: 201 SCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV 259

Query: 165 FCSASG-DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
              A+G DC   ++        +                            K+       
Sbjct: 260 ---AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316

Query: 224 NYRVPIAVLNGHGYAVRKVKFSP---HRRNLLASCSYDMTVCLWDF 266
                  + + H  +V ++        + +   +   D  + +WD 
Sbjct: 317 AGA---GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 88.5 bits (220), Expect = 5e-20
 Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 16/174 (9%)

Query: 144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWN 201
                   +    WN   + +      +  + I++        +     H  ++   DW 
Sbjct: 3   YHSFLVEPISCHAWNKDRTQI-AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 61

Query: 202 KYDDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
             D   I +   D++  +W ++     P  V+     A R V+++P      A  S    
Sbjct: 62  -PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV 119

Query: 261 VCLWDFMVED---ALVGRYDHHTEFAVGVDMS---VLVEGLLASTGWDELVYVW 308
           + +  F  E+                + +D     V    LLA+   D    ++
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV----LLAAGSCDFKCRIF 169

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 13/168 (7%)

Query: 61  DGVYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V+ + +S   +   +A V+ D +V + D         + +L   T  + +  +     
Sbjct: 203 GWVHGVCFS--ANGSRVAWVSHDSTVCLADAD---KKMAVATLASETLPLLAVTFITE-- 255

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
            S + +  D    L+T D      +F         ++     +                 
Sbjct: 256 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 315

Query: 180 REMGSTMIIPAHEFEILACDW---NKYDDCLIASASVDKSIKIWDVRN 224
                  +   H+  +         K       +  +D  + IWDVR+
Sbjct: 316 A--AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD-----FMVEDALVGRYDHHTEFA 283
           +A  +     +    ++  R   +A C  +  V +++     ++    L      H    
Sbjct: 1   MAYHSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKE----HNGQV 55

Query: 284 VGVDMSVLVEG-LLASTGWDELVYVW 308
            GVD +   +   + + G D   YVW
Sbjct: 56  TGVDWA--PDSNRIVTCGTDRNAYVW 79

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  116 bits (294), Expect = 2e-30
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 33/229 (14%)

Query: 61  DGVYDLAWS----ESHDSLLIA-AVADGSVKIYDTA----LPPTANPIRSLHEHTREVHS 111
           D V  +       E+ DS ++     D +V I+             P ++L  H   V  
Sbjct: 22  DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSD 81

Query: 112 ADYNPTRRD-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCS 167
              +    +  F  S SWD T++LW +   T+ + F  H   VY+  ++P  R      S
Sbjct: 82  LALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ---ILS 135

Query: 168 ASGDCTLRIWDVREMGSTMIIP--AHEFEILA---------CDWNKYDDCLIASASVDKS 216
           A  +  +++W++             H   +            +  +      AS   D  
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195

Query: 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           +K+W+  N+++       H   V  +  SP+ +  +A+   D  + +WD
Sbjct: 196 LKVWNT-NFQI-RYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWD 241

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  108 bits (273), Expect = 2e-27
 Identities = 49/278 (17%), Positives = 95/278 (34%), Gaps = 46/278 (16%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V DLA S   ++     +  D +++++D     T    +    H  EV+S  ++P  R
Sbjct: 77  HFVSDLALS--QENCFAISSSWDKTLRLWDLR---TGTTYKRFVGHQSEVYSVAFSPDNR 131

Query: 120 DSFITS-SWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHSDVFC---------S 167
              I S   +  +KLW +      S    + H+  V    ++P                S
Sbjct: 132 --QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189

Query: 168 ASGDCTLRIWDV-REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
              D  L++W+   ++  T    AHE  +     +  +   IA+   DK + IWD+ N  
Sbjct: 190 VGWDGRLKVWNTNFQIRYTFK--AHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILN-L 245

Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV 286
                    G  + ++ F+P  +  +A  + D  V +++ M +                 
Sbjct: 246 TYPQREFDAGSTINQIAFNPKLQ-WVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAE 303

Query: 287 DMSVLVEG---------------LLASTGWDELVYVWQ 309
                 +G                L +   D ++  + 
Sbjct: 304 GQ----KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 29/205 (14%)

Query: 126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD-----VFCSASGDCTLRIWDV- 179
           + + ++ +  V R       + H+  V +        +     V  S S D T+ IW + 
Sbjct: 2   ADNSSLDIQVVKR----GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY 57

Query: 180 -REMGSTMIIPA-----HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
             E      IP      H   +     ++ ++C   S+S DK++++WD+R          
Sbjct: 58  EEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRT-GTTYKRFV 115

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTE--FAV------ 284
           GH   V  V FSP  R  + S   +  + LW+ + E          H++    V      
Sbjct: 116 GHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM 174

Query: 285 -GVDMSVLVEGLLASTGWDELVYVW 308
              +         AS GWD  + VW
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVW 199

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 36/187 (19%)

Query: 61  DGVYDLAWS--------ESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHS 111
           D V  + +S            +   A    DG +K+++T          +   H   V+ 
Sbjct: 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT----NFQIRYTFKAHESNVNH 218

Query: 112 ADYNPTRRD-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCS 167
              +P   +  +I +   D  + +W +   T  +   +    +    +NP  +       
Sbjct: 219 LSISP---NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQW---VAV 272

Query: 168 ASGDCTLRIWDV--REMGSTMIIPAHEFEILACDWNKYDDC----------LIASASVDK 215
            + D  ++I+++  +       I A           K   C           + +   D 
Sbjct: 273 GT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331

Query: 216 SIKIWDV 222
            I+ +  
Sbjct: 332 VIRTFSF 338

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 17/89 (19%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTA----------LPPTANPIRSLHEHTREVH 110
             +  +A++       +A   D  VKI++                            +  
Sbjct: 256 STINQIAFN--PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT 313

Query: 111 SADYNPTRRDS--FITSSWDDTVKLWTVD 137
           S  +N              D  ++ ++ +
Sbjct: 314 SLAWNA---LGKKLFAGFTDGVIRTFSFE 339

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score =  117 bits (295), Expect = 4e-30
 Identities = 34/231 (14%), Positives = 76/231 (32%), Gaps = 27/231 (11%)

Query: 59  TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL--HEHTREVHSADYNP 116
             + +   A S      LI     G +KI++           S   ++ +  V      P
Sbjct: 62  EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP 121

Query: 117 TRRDSFITSSWDDTVKLWTVD----------------RPTSVRTFKEHAYCVYNATWNPR 160
               +F  SS D  + +  V+                R  +++ F ++ Y V    +   
Sbjct: 122 NFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180

Query: 161 HSDVFCSASGDCTLRIWDVREMG--STMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
              +  + +    + I+D+R +     +        + +   ++ + C++   +    I 
Sbjct: 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIID 239

Query: 219 IWDVRNYRVPIAVL----NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           IWD+R   V I       +     V   +F      ++   S    + +W+
Sbjct: 240 IWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 95.2 bits (237), Expect = 3e-22
 Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRP--TSVRTFKEH-AYCVYNATWNPRHSDVF 165
           + +    P  RD        + V+   +       + T  E+    + ++  +P  +   
Sbjct: 20  LSTFKILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYL 79

Query: 166 CSASGDCTLRIWDVREMGSTMIIPA-----HEFEILACDWNKYDDCLIASASVDKSIKIW 220
            + S    ++IW+++E+    +  +         +        +    A +S D  I + 
Sbjct: 80  ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVL 138

Query: 221 DV---------------RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            V                  ++ +     + YAVR   F    ++LL + +    V ++D
Sbjct: 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD 198

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 91.8 bits (228), Expect = 6e-21
 Identities = 22/249 (8%), Positives = 59/249 (23%), Gaps = 46/249 (18%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYD--------TALPPTANPIRS-----LHEHTR 107
             V  +    +       +  DG + +                   IR        ++  
Sbjct: 112 STVTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170

Query: 108 EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVF 165
            V    +    +   +  +    V ++ +     ++  +       V +   +     V 
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VL 229

Query: 166 CSASGDCTLRIWDVR--EMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
              +    + IWD+R   +  +      A    +  C +   +  ++   S    + IW+
Sbjct: 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289

Query: 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNL------------------------LASCSY 257
                                 F P  + L                        L +   
Sbjct: 290 FVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEA 348

Query: 258 DMTVCLWDF 266
             ++ ++  
Sbjct: 349 TSSIVMFSL 357

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 88.7 bits (220), Expect = 5e-20
 Identities = 39/343 (11%), Positives = 93/343 (27%), Gaps = 64/343 (18%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
             +   P +    AV++        +G++ VL ++                   +L    
Sbjct: 115 TQITMIPNF-DAFAVSSK-------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG 166

Query: 71  SHD-------------SLLIAAVADGSVKIYDTALPPTANPIRSL--HEHTREVHSADYN 115
            ++             SLL+A      V I+D     T   ++ +        V S   +
Sbjct: 167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR---TLERLQIIENSPRHGAVSSICID 223

Query: 116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA----YCVYNATWNPRHSDVFCSASGD 171
                  I  +    + +W +     +R++          V    +  ++S +    S  
Sbjct: 224 EECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282

Query: 172 CTLRIWDVREMGSTMIIPAHEFEILA------------------------CDWNKYDDCL 207
             L IW+  +          + +                              +  +D +
Sbjct: 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKI 342

Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267
           + +     SI ++ +       +       +     F P       + +  M +      
Sbjct: 343 LLTDEATSSIVMFSLNE---LSSSKAVISPSRFSDVFIP----TQVTANLTMLLRKMK-R 394

Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
                V    +H +    +    + E  LL +     L+ ++Q
Sbjct: 395 TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGH-GYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-MV 268
             + +S  + ++R     IA L  +   ++     SP     L + S    + +W+   +
Sbjct: 39  QEIVRSPNMGNLRG--KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEI 96

Query: 269 EDALVGRYDHHTEFAVGV-DMSVLVEG-LLASTGWDELVYVW 308
               V       + +  V  ++++      A +  D  + V 
Sbjct: 97  IVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  115 bits (291), Expect = 4e-30
 Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 23/226 (10%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHE----------HTREV 109
             +Y + ++ +H  L +A +  DG +++YD   P          E          H +  
Sbjct: 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170

Query: 110 HSADYNPTRRDS--FITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNP---RHS 162
               + P+R        S+ +  +        +         H   + + +W P   R  
Sbjct: 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230

Query: 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW---NKYDDCLIASASVDKSIKI 219
            +  +   D  +RI+ + E  S +            D       D    + ++ ++  ++
Sbjct: 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290

Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                  + ++  + H   V  V ++     +L+S   D  V LW 
Sbjct: 291 QSNLQVEL-LSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWK 334

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  102 bits (257), Expect = 3e-25
 Identities = 45/283 (15%), Positives = 97/283 (34%), Gaps = 42/283 (14%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTA------LPPTANPIRSLHEHTREVHSAD 113
             +  + W+      +IA A  D +VK+++             N + +L++    ++S  
Sbjct: 58  SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVK 117

Query: 114 YNPTRRDSFITS-SWDDTVKLWTVDRPTSVRTFKE-------------HAYCVYNATWNP 159
           + P      +     D  ++L+    P+ +R++               H    +  +W P
Sbjct: 118 FAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177

Query: 160 --RHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDW---NKYDDCLIASA 211
                +    ++ +  +     ++ G   +    P H+  I +  W         LIA+ 
Sbjct: 178 SRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236

Query: 212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR-RNLLASCSYDM----TVCLWDF 266
             D  I+I+ +      ++ L           F      ++ A    D        L   
Sbjct: 237 CKDGRIRIFKITE---KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS- 292

Query: 267 MVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
            ++  L+  +D H      V  +  + G +L+S G D  V +W
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWN--LTGTILSSAGDDGKVRLW 333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  100 bits (250), Expect = 3e-24
 Identities = 37/253 (14%), Positives = 77/253 (30%), Gaps = 46/253 (18%)

Query: 94  PTANPIRSLHEHTREVHSADYNPT-RRDSFITSSWDDTVKLWTVDRPTS----VRTFKEH 148
           P   P      H   VH   Y+   R     T S D  +K++ +D+ TS      +++ H
Sbjct: 1   PHMQPF--DSGHDDLVHDVVYDFYGRH--VATCSSDQHIKVFKLDKDTSNWELSDSWRAH 56

Query: 149 AYCVYNATWNP-RHSDVFCSASGDCTLRIWDVREMGSTMIIPA---------HEFEILAC 198
              +    W    +  +  SAS D T+++W+                      +  + + 
Sbjct: 57  DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV 116

Query: 199 DW-NKYDDCLIASASVDKSIKIWDVRN------------YRVPIAVLNGHGYAVRKVKFS 245
            +   +    +A    D  ++++D                +V       H  +   + + 
Sbjct: 117 KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC 176

Query: 246 P--HRRNLLASCSYDMTVCLWD-----FMVEDALVGRYDHHTEFAVGVDMS---VLVEGL 295
           P       LA  + +  +           V   L G    H      +  +        L
Sbjct: 177 PSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG----HKSLIRSISWAPSIGRWYQL 232

Query: 296 LASTGWDELVYVW 308
           +A+   D  + ++
Sbjct: 233 IATGCKDGRIRIF 245

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 18/240 (7%)

Query: 11  YSVKFSP-FYESRLAVATAQN----FGILGNGRVHVLDLSPAAPALTELVAFDTADGVYD 65
           YSVKF+P     +LA          +  L    +    L+     L+   A       + 
Sbjct: 114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL-QSDFC 172

Query: 66  LAWSESHDS--LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP--TRRDS 121
           L+W  S  S   L  +  + ++           +    L  H   + S  + P   R   
Sbjct: 173 LSWCPSRFSPEKLAVSALEQAIIYQRGK-DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231

Query: 122 FI-TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP-RHSDVFCSASG--DCTLRIW 177
            I T   D  ++++ +    S    +E          +     D    +    +    + 
Sbjct: 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291

Query: 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV--RNYRVPIAVLNGH 235
              ++        H  E+ +  WN     +++SA  D  +++W     N    ++V+   
Sbjct: 292 SNLQVELLSEHDDHNGEVWSVSWN-LTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 231 VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH----HTEFAVGV 286
             +GH   V  V +  + R  +A+CS D  + ++  + +D            H    V +
Sbjct: 6   FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFK-LDKDTSNWELSDSWRAHDSSIVAI 63

Query: 287 DMSVLVEG-LLASTGWDELVYVWQ 309
           D +    G ++AS  +D+ V +W+
Sbjct: 64  DWASPEYGRIIASASYDKTVKLWE 87

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  119 bits (299), Expect = 5e-30
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 18/215 (8%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYD--TALPPTANPIRSLHEHTREVHSADYNPTR 118
           D V  +A    +  ++++A  D S+ ++             R L  H+  V     +   
Sbjct: 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-- 440

Query: 119 RD-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTL 174
            D  F  S SWD  ++LW +    S R F  H   V +  ++   R      SAS D T+
Sbjct: 441 -DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ---IVSASRDRTI 496

Query: 175 RIWDVR-EMGSTMIIPA--HEFEILACDWN-KYDDCLIASASVDKSIKIWDVRNYRVPIA 230
           ++W+   E   T+      H   +    ++       I SAS DK++K+W++ N ++  +
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-RS 555

Query: 231 VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            L GH   V  V  SP    L AS   D  V LWD
Sbjct: 556 TLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWD 589

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  107 bits (268), Expect = 5e-26
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 10/212 (4%)

Query: 62  GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
             +    +   ++       D ++    T          ++  HT  V +        D 
Sbjct: 338 AFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADI 397

Query: 122 FITSSWDDTVKLWTVDRPTSV-----RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
            +++S D ++ LW + +         R    H++ V +   +        S S D  LR+
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL 456

Query: 177 WDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV--RNYRVPIAVLNG 234
           WD+    ST     H  ++L+  ++  D+  I SAS D++IK+W+              G
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515

Query: 235 HGYAVRKVKFSP-HRRNLLASCSYDMTVCLWD 265
           H   V  V+FSP   +  + S S+D TV +W+
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  104 bits (262), Expect = 3e-25
 Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 24/252 (9%)

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS--WD 128
                 +A     +  + +         + ++ + +   ++         S   +     
Sbjct: 305 KSYEEELAKDPRIAATMENAQ---KGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAAL 361

Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
              +           T + H   V        ++D+  SAS D ++ +W + +      +
Sbjct: 362 AAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV 421

Query: 189 PAHEFE-----ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK 243
                      +     +  D     S S D  +++WD+    V      GH   V  V 
Sbjct: 422 AQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVA 479

Query: 244 FSPHRRNLLASCSYDMTVCLWDFMVE--DALVGRYDHHTEFAVGVDMSV-----LVEGLL 296
           FS   R  + S S D T+ LW+ + E    +    + H +    V   V      ++  +
Sbjct: 480 FSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD---WV-SCVRFSPNTLQPTI 534

Query: 297 ASTGWDELVYVW 308
            S  WD+ V VW
Sbjct: 535 VSASWDKTVKVW 546

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  103 bits (259), Expect = 8e-25
 Identities = 57/277 (20%), Positives = 101/277 (36%), Gaps = 45/277 (16%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V D+  S   D         DG ++++D A        R    HT++V S  ++    
Sbjct: 431 HFVEDVVLS--SDGQFALSGSWDGELRLWDLA---AGVSTRRFVGHTKDVLSVAFSL--- 482

Query: 120 D-SFITS-SWDDTVKLWTVD---RPTSVRTFKEHAYCVYNATWNPRHSD-VFCSASGDCT 173
           D   I S S D T+KLW      + T     + H   V    ++P        SAS D T
Sbjct: 483 DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542

Query: 174 LRIWDV--REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV 231
           +++W++   ++ ST+    H   +     +  D  L AS   D  + +WD+      +  
Sbjct: 543 VKVWNLSNCKLRSTLA--GHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE-GKKLYS 598

Query: 232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSV 290
           L  +   +  + FSP+R   L + + +  + +WD  +E  ++V       +       + 
Sbjct: 599 LEANSV-IHALCFSPNRY-WLCAAT-EHGIKIWD--LESKSIVEDLKVDLKAEAEKADNS 653

Query: 291 LVEGL------------------LASTGWDELVYVWQ 309
                                  L S   D ++ VW 
Sbjct: 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 36/189 (19%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
           D V  + +S +     I  A  D +VK+++ +         +L  HT  V +   +P   
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCKLRSTLAGHTGYVSTVAVSP--- 571

Query: 120 D-SFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLR 175
           D S   S   D  V LW +     + + + ++  ++   ++P   +    C+A+ +  ++
Sbjct: 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSP---NRYWLCAAT-EHGIK 626

Query: 176 IWDV-------------------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
           IWD+                    +               + +W+  D   + S   D  
Sbjct: 627 IWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGV 685

Query: 217 IKIWDVRNY 225
           I++W +  Y
Sbjct: 686 IRVWGIGRY 694

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  109 bits (274), Expect = 2e-27
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 29/232 (12%)

Query: 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNP 159
           LH   +  +   +N  R   F+T++  + V+L+  D       RTF +H   V    W P
Sbjct: 7   LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP 65

Query: 160 RHSDVFCSASGDCTLRIWDVREMGS---TMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
             S+   + S D    +++ R  G+   T+++           W+  ++   A  S  + 
Sbjct: 66  -KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARV 123

Query: 217 IKIWDV---RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV 273
           I +       ++ V   +       +  + + P+   LLA+   D    +    V D + 
Sbjct: 124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRD-VD 181

Query: 274 GRYDHHTEFAVGVDMSVLVE----------------GLLASTGWDELVYVWQ 309
            + +     +     +V  E                  LA  G D  V +  
Sbjct: 182 AKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  102 bits (255), Expect = 7e-25
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 13/177 (7%)

Query: 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILA 197
            + +         Y   +N + ++   + +    + +++    G         H+  +  
Sbjct: 2   ATSQVLHILPKPSYEHAFNSQRTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTC 60

Query: 198 CDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASC 255
            DW       I + S D++  +++ R         VL     A   V++SP+     A  
Sbjct: 61  VDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVG 118

Query: 256 SYDMTVCLWDFMVED---ALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
           S    + +  F  E+                + +D        LLA+   D   YV 
Sbjct: 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH--PNNVLLAAGCADRKAYVL 173

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  100 bits (250), Expect = 3e-24
 Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 32/230 (13%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W+    S  I     D +  +Y+     T      L    R      ++P   
Sbjct: 56  KIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED 113

Query: 120 DSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR 175
             F   S    + +   ++      S    +     + +  W+P ++ +  +   D    
Sbjct: 114 -KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAY 171

Query: 176 IWDVR-----------------EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
           +                        +          + A  ++      +A A  D S+ 
Sbjct: 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHDSSVT 230

Query: 219 IWDVRN---YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           I            +  +      +R + ++     ++A+  Y+ +  L  
Sbjct: 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAA-GYNYSPILLQ 278

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 33/235 (14%), Positives = 76/235 (32%), Gaps = 35/235 (14%)

Query: 61  DGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALP-PTANPIRS-------------LHEH 105
             +  L W    +++L+AA  AD    +    +    A P  S              +  
Sbjct: 147 STILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204

Query: 106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVD----RPTSVRTFKEHAYCVYNATWNPRH 161
              VH+  ++P+   +   +  D +V +         P ++ T K     + +  W    
Sbjct: 205 GGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263

Query: 162 SDVFCSASGDCTLRIWDVREMGSTMI--IPAHEFEILACDWNKY-----DDCLIASASVD 214
           + V  +A  + +  +    E G      + A   +              ++  ++  ++ 
Sbjct: 264 AIV--AAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALR 321

Query: 215 KSIKIWDVRNYRVPIAVLNG-HGYAVRKVK-FSPH--RRNLLASCSYDMTVCLWD 265
            + +  D++     I+ L   H   +  ++ ++          S   D  V LW 
Sbjct: 322 STFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 19/189 (10%), Positives = 51/189 (26%), Gaps = 26/189 (13%)

Query: 52  TELVAFDTADGVYDLAWSESHDSLLIAAVA-DGSVKIYDTALP-PTANPIRSLHEHTREV 109
           T    + +   V+ + +S       +A    D SV I   + P      + ++      +
Sbjct: 197 TVCAEYPSGGWVHAVGFS--PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL 254

Query: 110 HSADYNPTRRDSFITSSWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCS 167
            S  +      + + + ++ +  L   +       R          + T      +    
Sbjct: 255 RSLLWANE--SAIVAAGYNYSPILLQGNESGWAHTRDLDAGT----SKTSFTHTGNTGEG 308

Query: 168 ASGDCTLRIWDVREMGSTMIIPA-----------HE---FEILACDWNKYDDCLIASASV 213
              +  +    +R     M +             H+     +        +     S+  
Sbjct: 309 REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT 368

Query: 214 DKSIKIWDV 222
           D  + +W +
Sbjct: 369 DGRVVLWTL 377

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  108 bits (273), Expect = 3e-27
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP-IRSLHEHTREVHSADYNPTRR 119
             V  L+W+      L +    G++  +D      AN  I +L  H+ EV    +     
Sbjct: 177 ARVGCLSWNRHV---LSSGSRSGAIHHHDVR---IANHQIGTLQGHSSEVCGLAWRSD-- 228

Query: 120 DSFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG--DCTLRI 176
              + S   D+ V++W         T   H   V    W P  S++  +  G  D  +  
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288

Query: 177 WDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYR-VPIAVLN 233
           W+    G+ +       ++ +  W+      I S     D ++ IW   +        + 
Sbjct: 289 WNAAT-GARVNTVDAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP 346

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            H   V     SP  R +L++ + D  +  W 
Sbjct: 347 AHDTRVLYSALSPDGR-ILSTAASDENLKFWR 377

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  104 bits (261), Expect = 1e-25
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 34/202 (16%)

Query: 93  PPTANPIRSLHEHTREVHSADYNPTRR----------------DSF------------IT 124
            P A     L             P +R                D +            + 
Sbjct: 49  APEAKKPVDLRTQHNRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVA 108

Query: 125 SSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183
            + +  V +W  D  +       + +  V +  W+   S +     G+  + I+DV    
Sbjct: 109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFL-SVGLGNGLVDIYDVESQT 167

Query: 184 STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK 243
               +  H+  +    WN++   +++S S   +I   DVR     I  L GH   V  + 
Sbjct: 168 KLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224

Query: 244 FSPHRRNLLASCSYDMTVCLWD 265
           +       LAS   D  V +WD
Sbjct: 225 WRSDGL-QLASGGNDNVVQIWD 245

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 15/189 (7%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  LAW    D L +A    D  V+I+D     ++ P  +   H   V +  + P + 
Sbjct: 218 SEVCGLAWR--SDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQS 272

Query: 120 DSFITS--SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG--DCTLR 175
           +   T   + D  +  W       V T    +  V +  W+P HS    S  G  D  L 
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSP-HSKEIMSTHGFPDNNLS 330

Query: 176 IWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
           IW     G T  +   AH+  +L    +  D  ++++A+ D+++K W V +       + 
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWRVYDGDHVKRPIP 389

Query: 234 GHGYAVRKV 242
                   +
Sbjct: 390 ITKTPSSSI 398

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score =  106 bits (266), Expect = 1e-26
 Identities = 37/268 (13%), Positives = 77/268 (28%), Gaps = 21/268 (7%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D + D+    S   LLI +  DGS+ +Y   +      +     +   +   ++      
Sbjct: 12  DYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
                +    +    +    S +    +   +          D   +AS D  + + D R
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 181 EMGSTMIIPAHEFEILACDWNK-----YDDCLIASASVDKSIKIWDVRNYRVPI--AVLN 233
             G  +I   +         NK      +   +     +  ++ + +            +
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190

Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-----HTEFAVGVDM 288
           G  Y +R V   P  +   A  S D  V +  F  +              H       ++
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 289 SVLV--------EGLLASTGWDELVYVW 308
           +  V           L + G D ++  W
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCW 278

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score =  106 bits (265), Expect = 2e-26
 Identities = 34/300 (11%), Positives = 84/300 (28%), Gaps = 34/300 (11%)

Query: 12  SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES 71
            +K  P  +S L + +        +G + V      A  +  L +      +    + ++
Sbjct: 16  DIKIIP-SKSLLLITSW-------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 72  HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131
            D  +      G +   D      +   ++L  +   +          D  I +SWD  +
Sbjct: 68  TDLQIYVGTVQGEILKVDLI---GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHS-----DVFCSASGDCTLRIWDVREMGS-- 184
           ++             ++         N   +             +  ++ + +       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 185 -TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--------- 234
            T+     +++I        +    A +S+D  + +    +                   
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244

Query: 235 -----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMS 289
                  Y V  ++FSP R   L +   D  +  W+      +      + +  V +  S
Sbjct: 245 LKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 37/269 (13%), Positives = 90/269 (33%), Gaps = 35/269 (13%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
               F    + ++ V T Q       G +  +DL        + +  + A  +      +
Sbjct: 60  LCCNFIDNTDLQIYVGTVQ-------GEILKVDL--IGSPSFQALTNNEA-NLGICRICK 109

Query: 71  SHDSLLIAAVADGSVKIYDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
             D  LIAA  DG +++ D          +++L+ +  +V +  +      S +    ++
Sbjct: 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169

Query: 130 -TVKLWTVDRPTSVRTFKEHA---YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
             V+ + +          E +   Y + +    P+  + +  +S D  + +    + G  
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 186 MII---------------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA 230
                                 + + + +++      + +A  D  I  W+++  +    
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 231 VLNGHGYAVRKVKFSPHRRNLLAS-CSYD 258
               +  +V K+  S    N+L    S D
Sbjct: 289 FAKFNEDSVVKIACSD---NILCLATSDD 314

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 8/83 (9%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA---LVGRYDHHTEFAVG 285
           + +       +  +K  P  ++LL   S+D ++ ++ F ++     L+     +    + 
Sbjct: 4   VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLC 61

Query: 286 VDMSVLVEGLLASTGWDELVYVW 308
            +     +  +        +   
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKV 84

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  106 bits (266), Expect = 2e-26
 Identities = 32/213 (15%), Positives = 79/213 (37%), Gaps = 21/213 (9%)

Query: 106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP--RHSD 163
           +    ++ +  +    F +++ D+   +        +         +   +++P     +
Sbjct: 2   SLFGTTSGFGTSGTSMFGSATTDNHNPMK------DIEVTSSPDDSIGCLSFSPPTLPGN 55

Query: 164 VFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
              + S    +R W+V++ G T+      H   +L   W+  D   + +AS DK+ K+WD
Sbjct: 56  FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWD 114

Query: 222 VRNYRVPIAVLNGHGYAVRKVKF--SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
           + + +     +  H   V+ + +  +P+    + + S+D T+  WD       +      
Sbjct: 115 LSSNQA--IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWD-TRSSNPMMVLQLP 170

Query: 280 TEFAVGVDMSVLVEGL-LASTGWDELVYVWQQG 311
                     V+     +A+     +VY  +  
Sbjct: 171 ER---CYCADVIYPMAVVATAERGLIVYQLENQ 200

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  105 bits (264), Expect = 4e-26
 Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 19/204 (9%)

Query: 67  AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS--FIT 124
            +  S  S+  +A  D    + D         I         +    ++P        I 
Sbjct: 9   GFGTSGTSMFGSATTDNHNPMKD---------IEVTSSPDDSIGCLSFSPPTLPGNFLIA 59

Query: 125 SSWDDTVKLWTVDRPTSV--RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
            SW + V+ W V        +  + H   V +  W+   S VF +AS D T ++WD+   
Sbjct: 60  GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDL-SS 117

Query: 183 GSTMIIPAHEFEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
              + I  H+  +    W K  +   + + S DK++K WD R+   P+ VL         
Sbjct: 118 NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPERCYCA 176

Query: 242 VKFSPHRRNLLASCSYDMTVCLWD 265
               P    ++A+    + V   +
Sbjct: 177 DVIYP--MAVVATAERGLIVYQLE 198

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  103 bits (260), Expect = 1e-25
 Identities = 46/270 (17%), Positives = 86/270 (31%), Gaps = 31/270 (11%)

Query: 61  DGVYDLAWS--ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
           D +  L++S      + LIA      V+ ++          ++   HT  V    ++   
Sbjct: 40  DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSD-- 96

Query: 119 RDS--FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC--SASGDCTL 174
            D     T+S D T K+W +    ++    +H   V    W  +  +  C  + S D TL
Sbjct: 97  -DGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWI-KAPNYSCVMTGSWDKTL 153

Query: 175 RIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
           + WD R     M++   E      D   Y   ++A+A     +   + +       + + 
Sbjct: 154 KFWDTRSSNPMMVLQLPE-RCYCADVI-YPMAVVATAERGLIVYQLENQPSEF-RRIESP 210

Query: 235 HGYAVRKVKFSP---HRRNLLASCSYDMTVCLWDFMVEDALVGRY--DHHTEFAVGVDMS 289
             +  R V       ++    A  S +  V +      +     +    H          
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270

Query: 290 VLVE-----------GLLASTGWDELVYVW 308
             +            G LA+ G D     W
Sbjct: 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  100 bits (251), Expect = 3e-24
 Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 27/225 (12%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V  + W ++ +   +     D ++K +DT    ++NP+  L    R  + AD      
Sbjct: 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR---SSNPMMVLQLPER-CYCADVIYPMA 183

Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP---RHSDVFCSASGDCTLRI 176
               T+     V           R      +                 F   S +  + I
Sbjct: 184 VV-ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242

Query: 177 WDV---------------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
             +               R  G+    P   + +    ++      +A+   D     WD
Sbjct: 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWD 301

Query: 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
               R  +         +    F+ +   + A  S        +F
Sbjct: 302 KDA-RTKLKTSEQLDQPISACCFNHNGN-IFAYASSYDWSKGHEF 344

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  100 bits (251), Expect = 3e-24
 Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 34/227 (14%)

Query: 61  DGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR 119
             V D+ WS   D   +  A  D + K++D +   +   I+ + +H   V +  +     
Sbjct: 87  GPVLDVCWS--DDGSKVFTASCDKTAKMWDLS---SNQAIQ-IAQHDAPVKTIHWIKAPN 140

Query: 120 DSFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
            S + + SWD T+K W       +   +    C       P        A+ +  L ++ 
Sbjct: 141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA----VVATAERGLIVYQ 196

Query: 179 VREMGSTM--IIPAHEFEI--LACDWN-KYDDCLIASASVDKSIKIWDVR---------- 223
           +    S    I    + +   +A   + +      A  S++  + I  +           
Sbjct: 197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256

Query: 224 ----NYRVPIAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWD 265
                            YAV  + F P H    LA+   D     WD
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT--LATVGSDGRFSFWD 301

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 74  SLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131
            + + A A+  + +Y     P+        L    R V        +   F   S +  V
Sbjct: 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240

Query: 132 KLWTVDRPTSVR---TFK------------EHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
            +  ++ P   +   TFK            +  Y V    ++P H     +   D     
Sbjct: 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSF 299

Query: 177 WDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
           WD             +  I AC +N  +  + A AS     K  +  N
Sbjct: 300 WDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFYN 346

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 27/144 (18%)

Query: 11  YSVKFSP---FYESRLAVATAQNFGILGNGRVHVLDLSPAAPA------------LTELV 55
             V          +  A+ +         GRV +  ++P  PA             T   
Sbjct: 216 RCVAIFKDKQNKPTGFALGS-------IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

Query: 56  AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN 115
           A      V  +A+   H   L    +DG    +D         +++  +  + + +  +N
Sbjct: 269 APQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKD---ARTKLKTSEQLDQPISACCFN 324

Query: 116 PTRRDSFITSSWDDTVKLWTVDRP 139
                 F  +S  D  K      P
Sbjct: 325 HNGN-IFAYASSYDWSKGHEFYNP 347

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score =  105 bits (263), Expect = 1e-25
 Identities = 27/250 (10%), Positives = 80/250 (32%), Gaps = 24/250 (9%)

Query: 35  GNGRVHVLDLSPAAPALTELVAFDTADG-VYDLAWSESHDS-----LLIAAVADGSVKIY 88
            +  + +  ++ +     ++     + G V+DL W E   +      L     +G++   
Sbjct: 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFL 240

Query: 89  DTALPPT--------ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140
           +     T          P  +L      + + D+      + +    +  V  + +  P 
Sbjct: 241 EIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVVCGFKNGFVAEFDLTDPE 298

Query: 141 S-VRTFKEHAYCVYN--ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE--I 195
                 + H   + +    ++     V  + + D    I++ +++ +T    +      +
Sbjct: 299 VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358

Query: 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC 255
           +   +       I S     S++    R     +  L      +  +  S     ++ + 
Sbjct: 359 VPVVYCPQIYSYIYSDG-ASSLRAVPSRAAF-AVHPLVSRETTITAIGVSRL-HPMVLAG 415

Query: 256 SYDMTVCLWD 265
           S D ++ + +
Sbjct: 416 SADGSLIITN 425

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 83.0 bits (204), Expect = 7e-18
 Identities = 16/221 (7%), Positives = 58/221 (26%), Gaps = 24/221 (10%)

Query: 110 HSADYNPTRRDSFITSSWDDTVKLWTVD----RPTSVRTFKEHAYCVYNATWNPRHSD-- 163
           +  +      + F        ++++ ++        V+T       V++  W+       
Sbjct: 164 YMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPH 223

Query: 164 ---VFCSASGDCTLRIWDVREMGSTMIIPA-----------HEFEILACDWNKYDDCLIA 209
                   S + T+   ++ +  + + +              +  I   D+       + 
Sbjct: 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVV 281

Query: 210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF--SPHRRNLLASCSYDMTVCLWDFM 267
               +  +  +D+ +  VP      H   +  V    S     ++++ + D    +++  
Sbjct: 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341

Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
                           +   +          +     +   
Sbjct: 342 DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 82.2 bits (202), Expect = 1e-17
 Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 20/267 (7%)

Query: 9   NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW 68
           +     F     + +            NG V   DL+            D+       A+
Sbjct: 266 DSLITTFDFLSPTTVVCGFK-------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318

Query: 69  SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD 128
           S+  D+++     DG   I++                   +    Y P    S+I S   
Sbjct: 319 SDFEDTVVSTVAVDGYFYIFNPK-DIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGA 376

Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV-REMGSTMI 187
            +++        +V         +     +  H  V  + S D +L I +  R +   + 
Sbjct: 377 SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL-AGSADGSLIITNAARRLLHGIK 435

Query: 188 IPAHEFEILA---CDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF 244
             +   + L     D++  DD     +S +      +     V  A ++ HG  +   K+
Sbjct: 436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVN----DVSKAKIDAHGINITCTKW 491

Query: 245 SP--HRRNLLASCSYDMTVCLWDFMVE 269
           +         A  +    + L    +E
Sbjct: 492 NETSAGGKCYAFSNSAGLLTLEYLSLE 518

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score =  102 bits (255), Expect = 3e-25
 Identities = 34/254 (13%), Positives = 87/254 (34%), Gaps = 12/254 (4%)

Query: 65  DLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFI 123
           +L  S  +D  +      DG++         T   I + +  T   H A  +    +  +
Sbjct: 39  ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLL 98

Query: 124 TSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNP-RHSDVFCSASGDCTLRIWDVRE 181
                + + +        +R  + + A  +     +   +++ F  A    T+      +
Sbjct: 99  LLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158

Query: 182 MGSTMIIPAH-EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAV 239
               ++  A  + E  +   +K D  L+A  S D  + ++++ +     +         +
Sbjct: 159 DSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWD----FMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295
           ++VKF+ +   ++  C  D TV  +D                      V  D+    + +
Sbjct: 218 KEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275

Query: 296 LASTGWDELVYVWQ 309
           +A +     + +++
Sbjct: 276 IAYSNESNSLTIYK 289

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 94.1 bits (233), Expect = 4e-22
 Identities = 40/319 (12%), Positives = 102/319 (31%), Gaps = 30/319 (9%)

Query: 12  SVKFSPFYESRLAVATAQNFGILGN--GRVHVLDLSPAAPALTELVAFDTADGVYDLAWS 69
           ++K  P+ E   ++   +   +     G +H   L  +    T         G +    S
Sbjct: 31  NIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIIS 90

Query: 70  ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRR-DSFITSSW 127
               + L+       + I D+    T   +R +  +   E+     +     + FI +  
Sbjct: 91  RGPCNRLLLLYPGNQITILDSK---TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN 147

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYN-ATWNPRHSDVFCSASGDCTLRIWDVR--EMGS 184
             T+   + +  +        +   Y+    +   S +    S D  L ++++   +  S
Sbjct: 148 RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQAS 206

Query: 185 TMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRN----YRVPIAVLNGHGYA 238
           +      E +I    +  N Y    +     D+++  +D+R        P   +      
Sbjct: 207 SRFPVDEEAKIKEVKFADNGY---WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFM--------VEDALVGRYDHHTEFAVGVDMSV 290
                     +N++A  +   ++ ++ F          E++ +       +F   +D+  
Sbjct: 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADF-TDMDVVC 321

Query: 291 LVEGLLASTGWDELVYVWQ 309
              G+ A    ++   +  
Sbjct: 322 GDGGIAAILKTNDSFNIVA 340

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 94.8 bits (235), Expect = 6e-22
 Identities = 33/277 (11%), Positives = 72/277 (25%), Gaps = 32/277 (11%)

Query: 7   PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDL 66
           P    ++  S   +  L  A  +N        +                  D  D + + 
Sbjct: 6   PLQ--NLLTSR--DGSLVFAIIKN-------CILSFKYQSPNHWEFAGKWSDDFDKIQES 54

Query: 67  AWSESHDSLLIAAVADGSVKIYDTA--------LPPTANPIRSLHEHTREVHSADYNPTR 118
             + + +    ++  +   K   +              +P          + +       
Sbjct: 55  RNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE 114

Query: 119 RDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTL 174
                 +  D ++ ++ VD+ +     +R     +      +     + V   A     +
Sbjct: 115 SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTV-IIADKFGDV 173

Query: 175 RIWDVREMGSTMIIPA----HEFEILACDWNKYDDC--LIASASVDKSIKIWDVRNYRVP 228
              D+  +            H   +      K  D    I ++  D+ IKI       + 
Sbjct: 174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              L GH + V  +         L S   D  +  WD
Sbjct: 234 DKWLFGHKHFVSSICCGKDYL--LLSAGGDDKIFAWD 268

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 86.7 bits (214), Expect = 3e-19
 Identities = 34/258 (13%), Positives = 74/258 (28%), Gaps = 23/258 (8%)

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF-------- 122
           S D  L+ A+    +  +    P          +   ++  +     +            
Sbjct: 13  SRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENE 72

Query: 123 ---ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
              + S+  D++K      P+           + N       S +   A  D +L ++DV
Sbjct: 73  NKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDV 132

Query: 180 REMGSTMIIPAHEFE----ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP---IAVL 232
            +    ++     F       A    + DD  +  A     +   D+ +          +
Sbjct: 133 DKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPI 191

Query: 233 NGHGYAVRKVKFSP--HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290
            GH   +  V           + +   D  + +  +     +      H  F   +    
Sbjct: 192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250

Query: 291 LVEGLLASTGWDELVYVW 308
             + LL S G D+ ++ W
Sbjct: 251 -KDYLLLSAGGDDKIFAW 267

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 65.9 bits (160), Expect = 3e-12
 Identities = 37/261 (14%), Positives = 79/261 (30%), Gaps = 34/261 (13%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-AFDTADGVYDLAWS 69
            +++ +   +    +A A       +  + V D+   +  + +L   F  +     ++ +
Sbjct: 106 RNLRLTS--DESRLIACA-----DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158

Query: 70  ESHDSLLIAAVADGSVKIYDTALPPTANPI-RSLHEHTREVHSADYNPTRRDS--FITSS 126
              D+ +I A   G V   D    P        +  H   +               ITS 
Sbjct: 159 -EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD 217

Query: 127 WDDTVKLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
            D+ +K+    +   V  +   H + V +         +  SA GD  +  WD +   + 
Sbjct: 218 RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK--DYLLLSAGGDDKIFAWDWKTGKNL 275

Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
                +               LI     D+ +     +N    I       +AV K+  S
Sbjct: 276 STFDYNS--------------LIKPYLNDQHLAPPRFQNENNDIIE-----FAVSKIIKS 316

Query: 246 PHRRNLLASCSYDMTVCLWDF 266
            +   +         + + + 
Sbjct: 317 KNLPFVAFFVEATKCIIILEM 337

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 22/220 (10%)

Query: 12  SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT-ADGVYDLAWSE 70
           ++  +   ++ + +A          G V+ +D++                  + D+   +
Sbjct: 154 AISIAE-DDTTVIIADK-------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK 205

Query: 71  SHDS--LLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSW 127
             D    +I +  D  +KI      P    +   L  H   V S           +++  
Sbjct: 206 DSDGHQFIITSDRDEHIKISHY---PQCFIVDKWLFGHKHFVSSICCGKDYL--LLSAGG 260

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT----LRIWDVREMG 183
           DD +  W      ++ TF  ++               F + + D       +I   + + 
Sbjct: 261 DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320

Query: 184 STMIIPAHEFEILACD-WNKYDDCLIASASVDKSIKIWDV 222
                      I+  +   K    L     +     +  +
Sbjct: 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISL 360

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 90.2 bits (224), Expect = 1e-20
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 70/310 (22%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEH----TREVHSADYNP 116
             ++ ++     +S  ++   DG +K++D  L    NP    + H    +   H      
Sbjct: 17  ADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 73

Query: 117 TRRDS-----------------FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
             RD+                 +  +  D+T K+            K+H++       + 
Sbjct: 74  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133

Query: 160 RHSD--VFCSASGDCTLRIWDV------------------REMGSTMIIPAHEFEILACD 199
                    +     T  IW                       G+            + D
Sbjct: 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 193

Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRV-----PIAVLNGHGYAVRKVKFSPHRRNLLAS 254
            +  +  LIA+   + +++I ++   R          +  +  ++R VKFSP    LLA 
Sbjct: 194 IS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAI 250

Query: 255 CSYDMT---VCLWD------------FMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLAS 298
                +   + L++                         H+ + + +  +    G  L S
Sbjct: 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLCS 308

Query: 299 TGWDELVYVW 308
            GWD  +  W
Sbjct: 309 AGWDGKLRFW 318

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 38/274 (13%), Positives = 87/274 (31%), Gaps = 55/274 (20%)

Query: 63  VYDLAWSESHDSL----LIAAVADGSVKIYDTALPP---------------TANPIRSLH 103
            + L W  S+D L    L+A    G+  I+                         + S  
Sbjct: 124 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 183

Query: 104 EHTREVHSADYNPTRRDSFITS-SWDDTVKLWTVD------RPTSVRTFKEHAYCVYNAT 156
             ++   S D +       I +   + TV++  +          S  +   ++  + +  
Sbjct: 184 TPSQFATSVDISE---RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240

Query: 157 WNPRHSDVFCSASGDCTL---RIWDV-------------REMGSTMIIPAHEFEILACDW 200
           ++P    +   A    +     +++                  +++   AH   +++  +
Sbjct: 241 FSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299

Query: 201 NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK----VKFSPHRRNLLASCS 256
           N      + SA  D  ++ WDV+  +  I  LN H   +      +    H  +L     
Sbjct: 300 ND-SGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 357

Query: 257 YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290
           +D+           + +G   + +   V +D S+
Sbjct: 358 FDVKFLKK---GWRSGMGADLNESLCCVCLDRSI 388

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 52/230 (22%)

Query: 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRTFKEHAYCVYN-ATWNP 159
              H  ++ S           ++ S D  +K+W            K +++ V+     + 
Sbjct: 12  GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 68

Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYD-DC-LIASASVDKSI 217
                    + +  L                            +  D         D++ 
Sbjct: 69  DVLQAIERDAFELCLVATTS-----------------------FSGDLLFYRITREDETK 105

Query: 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN--LLASCSYDMTVCLWDF--------- 266
           K+   +   +  + +  H +   K   S  R     L +     T  +W F         
Sbjct: 106 KVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164

Query: 267 -MVEDALVGRYDH-------HTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
             +  +               ++FA  VD+S    GL+A+   +  V + 
Sbjct: 165 LTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERGLIATGFNNGTVQIS 212

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 46/183 (25%)

Query: 61  DGVYDLAWSESHDSLLIAAVAD----GSVKIYDTA----------LPPTANPIRSLHEHT 106
           + +  + +S      L+A   D    G + +Y+T              ++        H+
Sbjct: 234 NSIRSVKFS--PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291

Query: 107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC 166
             V S  +N +   +  ++ WD  ++ W V     + T   H   +              
Sbjct: 292 SWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDI----EIEEDILAVD 346

Query: 167 S-----ASG---DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
                 A     D        R   S M    +E               +    +D+SI+
Sbjct: 347 EHGDSLAEPGVFDVKFLKKGWR---SGMGADLNE--------------SLCCVCLDRSIR 389

Query: 219 IWD 221
            + 
Sbjct: 390 WFR 392

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 4/81 (4%)

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM 288
                 H   +  V       +   SCS D  + +WD  + D    +   ++ F     +
Sbjct: 9   ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 65

Query: 289 SVLVEG-LLASTGWDELVYVW 308
             +     +    ++  +   
Sbjct: 66  HHVDVLQAIERDAFELCLVAT 86

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 84.8 bits (209), Expect = 1e-18
 Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 54/229 (23%)

Query: 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV--------RTFKEHAYCVY 153
            + HT  ++S   N         S+ D  + LW ++                +E    + 
Sbjct: 173 ANAHTYHINSISINSDYE--TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230

Query: 154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
            A ++P   + F  +S   T+R+ D+R                            ASA  
Sbjct: 231 AAEFHPNSCNTFVYSSSKGTIRLCDMR----------------------------ASALC 262

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV 273
           D+  K+++        +  +    ++  VKFS   R  + +    ++V +WD  +E+  V
Sbjct: 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD-YLSVKVWDLNMENRPV 320

Query: 274 GRYDHHTEF-----------AVGVDMSVLVEG---LLASTGWDELVYVW 308
             Y  H               +         G   ++ +  ++    ++
Sbjct: 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 80.2 bits (197), Expect = 6e-17
 Identities = 43/224 (19%), Positives = 78/224 (34%), Gaps = 20/224 (8%)

Query: 53  ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSA 112
           EL+A     G   +   E  + +   +  + +V     +  P  + ++SL E   +++  
Sbjct: 41  ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL-EIEEKINKI 99

Query: 113 DYNPTRRDS-FITSSWDDTVKLWTV---DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA 168
            + P +  + F+ S+ D T+KLW +   D+       KE      + T       V    
Sbjct: 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT-TLRVPVFR 158

Query: 169 SGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN---- 224
             D  +     R     +   AH + I +   N  D     SA  D  I +W +      
Sbjct: 159 PMDLMVEASPRR-----IFANAHTYHINSISINS-DYETYLSAD-DLRINLWHLEITDRS 211

Query: 225 ---YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                +  A +      +   +F P+  N     S   T+ L D
Sbjct: 212 FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 61.7 bits (149), Expect = 7e-11
 Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 41/215 (19%)

Query: 71  SHDSLLIAAVADGSVKIYDT-----ALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
           + D     +  D  + ++       +         ++ E T  + +A+++P   ++F+ S
Sbjct: 186 NSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245

Query: 126 SWDDTVKLW----------------TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS 169
           S   T++L                   + P++   F E    + +  ++        +  
Sbjct: 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRD 304

Query: 170 GDCTLRIWDVREMGS-TMIIPAHE---------------FEILACDWNKYDDCLIASASV 213
              ++++WD+            HE               F+   C WN   D ++ + S 
Sbjct: 305 -YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSY 362

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR 248
           +   +++D    R  I +         +    P +
Sbjct: 363 NNFFRMFDRNTKR-DITLEASRENNKPRTVLKPRK 396

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 28/170 (16%)

Query: 167 SASGDCTLRIWDVRE-MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY 225
           + +G      W   +  G+     A    I   ++N     L+A+      + I+  +  
Sbjct: 2   AGAGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNH-SGELLATGDKGGRVVIFQ-QEQ 59

Query: 226 RVPIAVLNGHGY-----------------------AVRKVKFSPHR-RNLLASCSYDMTV 261
              I   +   Y                        + K+++ P +        + D T+
Sbjct: 60  ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119

Query: 262 CLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVWQQ 310
            LW     D     Y+   E        +V    +      D +V    +
Sbjct: 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 79.3 bits (195), Expect = 6e-17
 Identities = 46/328 (14%), Positives = 100/328 (30%), Gaps = 57/328 (17%)

Query: 11  YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE 70
              +F+    S L ++T ++F         + ++ P A  +++ +       +  +    
Sbjct: 23  TDYEFNQDQ-SCLILSTLKSF--------EIYNVHPVAHIMSQEM-----RHLSKVRMLH 68

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT 130
             + +         V I+D         +  + +    V     +      FI  S+ D 
Sbjct: 69  RTNYVAFVTGVKEVVHIWDDV---KKQDVSRI-KVDAPVKDLFLSRE----FIVVSYGDV 120

Query: 131 VKLWTVDRPTSVRTFKEH------------AYCVYNATWNPRHSDV-FCSASGDCTLRIW 177
           + ++    P    T                 Y           + +    ++      + 
Sbjct: 121 ISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180

Query: 178 DVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS-IKIWDVRNYRVPIAVLNGHG 236
               +G  ++I AH   I     N+    ++A+ S D + I+++   +    +       
Sbjct: 181 QKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGL 238

Query: 237 Y--AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT-------------- 280
               V  +K+S      LA  S   T+ +++ +  D    R+                  
Sbjct: 239 DRADVVDMKWSTDGS-KLAVVSDKWTLHVFE-IFNDQDNKRHALKGWINMKYFQSEWSLC 296

Query: 281 EFAVGVDMSVLVEGLLASTGWDELVYVW 308
            F + VD  V     +A      LV VW
Sbjct: 297 NFKLSVDKHVRG-CKIAWISESSLVVVW 323

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 62.4 bits (151), Expect = 4e-11
 Identities = 35/266 (13%), Positives = 78/266 (29%), Gaps = 58/266 (21%)

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN 154
           T NPI   +  +  V   ++N  +  S +  S   + +++ V          +    +  
Sbjct: 8   TRNPIVPENHVSNPVTDYEFNQDQ--SCLILSTLKSFEIYNVH--PVAHIMSQEMRHLSK 63

Query: 155 ATWNPRHSDVFCSASGDCTLRIWDVR-----------------EMGSTMIIPAHEFEILA 197
                R + V         + IWD                    +    I+ ++   I  
Sbjct: 64  VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISV 123

Query: 198 CD------------------WNKYDDCLIASASVDKSIKIWDVRNYRV------------ 227
                                      + ++      I I  +++               
Sbjct: 124 FKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA 183

Query: 228 ---PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYDHHTEFA 283
                 ++  H   ++ V+ +     ++A+CS D T + ++    +  LV  +    + A
Sbjct: 184 ILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFK-TEDGVLVREFRRGLDRA 241

Query: 284 VGVDMSVLVEG-LLASTGWDELVYVW 308
             VDM    +G  LA       ++V+
Sbjct: 242 DVVDMKWSTDGSKLAVVSDKWTLHVF 267

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 21/186 (11%)

Query: 79  AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT-VKLWTVD 137
           +       +              +  HT  +     N        T S D T ++++  +
Sbjct: 171 SATTQDQGVQQ---KAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTE 226

Query: 138 RPTSVRTFKEHAY--CVYNATWNPRHSDVFCSASGDCTLRIWDVRE--------MGSTMI 187
               VR F+       V +  W+          S   TL ++++          +   + 
Sbjct: 227 DGVLVREFRRGLDRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285

Query: 188 IPAHEFEILACDWN-----KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242
           +   + E   C++          C IA  S    + +W          V+         +
Sbjct: 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLI 345

Query: 243 KFSPHR 248
           +     
Sbjct: 346 QMDQRE 351

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 27/228 (11%), Positives = 57/228 (25%), Gaps = 31/228 (13%)

Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPTRR- 119
           V DL  S       I       + ++    P     + IR             Y+     
Sbjct: 103 VKDLFLSREF----IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL 158

Query: 120 -------DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC 172
                       S+      +            K H   +     N +   +  + S D 
Sbjct: 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDG 217

Query: 173 TL-RIWDVR--EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI 229
           T+ R++      +           +++   W+  D   +A  S   ++ ++++ N +   
Sbjct: 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNK 276

Query: 230 -------AVLNGHGYAVRKVKFSPHR-----RNLLASCSYDMTVCLWD 265
                    +           F            +A  S    V +W 
Sbjct: 277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 76.4 bits (187), Expect = 1e-15
 Identities = 32/260 (12%), Positives = 76/260 (29%), Gaps = 39/260 (15%)

Query: 50  ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV 109
           +L E   +  +      A+  +  +LL  A   G V IY          +    E    +
Sbjct: 7   SLAETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQ---QQVEVVIK-LEDRSAI 61

Query: 110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS 169
               +        +  +  DTV + ++     + T       + +   +    D      
Sbjct: 62  KEMRFVKGIY--LVVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASL-DWMLIGL 117

Query: 170 GDCTLRIWDV-REMGSTMIIP----------AHEFEILACDWNKYDDCLIASASVDKSIK 218
            + ++ ++D+ R+  S+  +           A    I++  WN  D   +  +  +    
Sbjct: 118 QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVTL 176

Query: 219 IWDVRNYRV-----------------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV 261
            + +    +                            V +  + P+    + +   D ++
Sbjct: 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSL 235

Query: 262 CLWDFMVEDALVGRYDHHTE 281
             WD      ++ R    TE
Sbjct: 236 VFWDANSGHMIMARTVFETE 255

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 18/198 (9%), Positives = 60/198 (30%), Gaps = 17/198 (8%)

Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162
           +  + +  +A ++ T+      ++    V ++   +   V   ++ +  +    +     
Sbjct: 14  YGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKLEDRS-AIKEMRFVKGIY 71

Query: 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
                 +   T+ +  +      +       +I + D +      +     + S+ ++D+
Sbjct: 72  --LVVINAKDTVYVLSLYS-QKVLTTVFVPGKITSIDTD-ASLDWMLIGLQNGSMIVYDI 127

Query: 223 R----------NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
                      N +            +  ++++P     +   SY+     +  +  +  
Sbjct: 128 DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI-SYEYVTLTYSLVENEIK 186

Query: 273 VGRYDHHTEFAVGVDMSV 290
                    FA G D S 
Sbjct: 187 QSFIYELPPFAPGGDFSE 204

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 61.8 bits (149), Expect = 1e-10
 Identities = 44/256 (17%), Positives = 78/256 (30%), Gaps = 46/256 (17%)

Query: 12  SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES 71
            ++F       L V  A          V+VL L     +   L        +  +    S
Sbjct: 63  EMRFVK--GIYLVVINA-------KDTVYVLSLY----SQKVLTTVFVPGKITSIDTDAS 109

Query: 72  HDSLLIAAVADGSVKIYDTA--------LPPTANPIRSLHEHTREVHSADYNPTRRDSFI 123
            D +LI    +GS+ +YD          L                + S  +NP R    +
Sbjct: 110 LDWMLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP-RDIGTV 167

Query: 124 TSSWDDTVKLWTVDRPTSVRTF------------------KEHAYCVYNATWNPRHSDVF 165
             S++     +++      ++F                  ++    V  + ++P +S   
Sbjct: 168 LISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHI 226

Query: 166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI-WDVRN 224
            +   D +L  WD       M     E EI     +   D   +S +  K  K+ W   N
Sbjct: 227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRD---SSTNAAKISKVYWMCEN 283

Query: 225 YRVPIAVLNGHGYAVR 240
                ++L  H    R
Sbjct: 284 NPEYTSLLISHKSISR 299

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 10/172 (5%)

Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
                  + +   D   T R S   +S++     +   +   +         + N    P
Sbjct: 296 SISRGDNQSLTMIDLGYTPRYS--ITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIP 352

Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY------DDCLIASASV 213
           R S  F        + +        TM+ P+  F   A  + +             +ASV
Sbjct: 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412

Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
              + +  +   +    +L G     R+   + +      +   + +V ++D
Sbjct: 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYD 463

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 65.3 bits (158), Expect = 5e-12
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 34/226 (15%)

Query: 66  LAWSESHDSLLIAAVADGSVKIYDT-----ALPPTANPIRSLH-------EHTREVHSAD 113
           LA S +   L+ A  A G ++I+ T        P  +P + +             +H   
Sbjct: 42  LAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLA 99

Query: 114 YNP---TRRDSFITSSWDDTVKLWTVDRPT-----------SVRTFKEHAYCVYNATWNP 159
            +    T     ++S +   +  + V   +             +  K+    V +  WNP
Sbjct: 100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP 159

Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
               +      D ++ +  V E             + +  W+      +A    + ++  
Sbjct: 160 TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQ 218

Query: 220 WDVRNYRV-----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
           +            P    + H   V  V +       +   + D T
Sbjct: 219 YLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVP----------IAVLNGHGYAVRKVKFS 245
           L+CD      C++ S+     I  +DVR +               +L   G  V  +K++
Sbjct: 100 LSCDNLTLSACMM-SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN 158

Query: 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV 305
           P   +++A C  D ++ +   + E   V      T     V  S   +  LA    +  V
Sbjct: 159 PTVPSMVAVCLADGSIAVLQ-VTETVKVCATLPSTVAVTSVCWSPKGK-QLAVGKQNGTV 216

Query: 306 YVW 308
             +
Sbjct: 217 VQY 219

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 22/184 (11%)

Query: 5   KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLS--------PAAPALTELVA 56
              F  + +  S      L+     +        +   D+            P     + 
Sbjct: 90  PMKFPIHHLALSCD-NLTLSACMMSSEY---GSIIAFFDVRTFSNEAKQQKRPFAYHKLL 145

Query: 57  FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP 116
            D    V D+ W+ +  S++   +ADGS+ +           + +    T  V S  ++P
Sbjct: 146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT---ETVKVCATLPSTVAVTSVCWSP 202

Query: 117 TRRDSFITSSWDDTVKLWTVD------RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG 170
             +        + TV  +          P       +H   V +  W   +      A+ 
Sbjct: 203 KGK-QLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261

Query: 171 DCTL 174
           D TL
Sbjct: 262 DGTL 265

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Length = 343

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 6/129 (4%)

Query: 35  GNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY--DTAL 92
              RV    ++P   ALT          +  ++       + + +   G+V +   +  L
Sbjct: 58  PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 117

Query: 93  PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV 152
           P     +    +     HSA+ +P  R  ++ +   D + L+TV         ++ A   
Sbjct: 118 PVGVVDVVEGLDG---CHSANISPDNRTLWVPALKQDRICLFTVS-DDGHLVAQDPAEVT 173

Query: 153 YNATWNPRH 161
                 PRH
Sbjct: 174 TVEGAGPRH 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.84
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.69
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.69
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.69
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.68
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.66
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.62
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.61
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.55
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.55
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.54
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.49
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.42
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.4
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.33
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.29
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.19
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.18
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.18
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.17
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.16
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.15
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.15
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.14
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.03
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.03
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.97
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.94
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.93
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.93
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.92
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.9
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.87
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.78
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.77
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.41
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.35
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.35
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.32
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.12
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.03
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.94
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.85
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.79
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.62
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.6
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.55
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.5
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.5
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.46
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.44
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.36
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.29
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.23
3ott_A	758	Two-component system sensor histidine kinase; beta	97.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.98
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.71
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	96.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.41
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	96.31
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	96.31
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.09
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.03
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.91
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.79
3ott_A	758	Two-component system sensor histidine kinase; beta	95.5
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	93.86
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.85
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.82
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.79
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.2
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.75
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	82.65

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-53  Score=347.36  Aligned_cols=301  Identities=21%  Similarity=0.289  Sum_probs=245.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +...|.+++|+|  ++.++++++....-.+++.+.+|+...... .........+...|.+++|+|++  .|++|+.||+
T Consensus        29 ~~~~v~~~~fs~--dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~  104 (344)
T 4gqb_B           29 MERQLEAARYRS--DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGA  104 (344)
T ss_dssp             CCSEEEEEEECT--TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSE
T ss_pred             ccCCEEEEEECC--CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCE
Confidence            456799999999  678888777332222344444444322221 11223334567889999999984  7889999999


Q ss_pred             EEEEEeCCCCCCCCc-eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANPI-RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      |++||+.+++..... ....+|...|++++|+|+++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++..
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS  183 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence            999999876322211 23458999999999999998 9999999999999999999999999999999999999999667


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ++++++.|+.|++||+++++....+.  .+...+.+++|+|.+++++++|+.|+.|++||+++.+ ++..+.+|...|++
T Consensus       184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~  262 (344)
T 4gqb_B          184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTG  262 (344)
T ss_dssp             EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEE
T ss_pred             ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEE
Confidence            89999999999999999998887764  3455789999999778899999999999999999876 47888999999999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ++|+|++..+|++|+.|++|+|||+++++ + ..+.+|.+.|++++|+|++..+|+++|.||+|++|++..++
T Consensus       263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          263 LVFSPHSVPFLASLSEDCSLAVLDSSLSE-L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTCCE-E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCc-E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99999986689999999999999998876 3 45789999999999999966688899999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-52  Score=346.72  Aligned_cols=301  Identities=20%  Similarity=0.284  Sum_probs=247.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-eeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |...|.+++|||  ++.++++++.+....+||.|++|+.....+... .....+|...|.+++|+|++  .+++++.||.
T Consensus        41 H~~~V~~v~fSp--DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~  116 (357)
T 4g56_B           41 MEVQIGAVRYRR--DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGA  116 (357)
T ss_dssp             CCSEEEEEEECS--SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSC
T ss_pred             ccCCEEEEEECC--CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCE
Confidence            678899999999  688888887654455688999999876653222 23344788899999999986  5667889999


Q ss_pred             EEEEEeCCCCCCCC-ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANP-IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      |++||+..++.... .....+|...|.+++|+|+++ +|++++.||.|++||+++++.+..+..|...|++++|+|++..
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence            99999987632222 223457999999999999998 9999999999999999999999999999999999999999667


Q ss_pred             eEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          164 VFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ++++++.||.|++||+++++....+.  .+...+.+++|+|..+.+|++|+.|+.|++||+++++ ++..+.+|...|++
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~  274 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITG  274 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEE
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-EeEEEeccceeEEE
Confidence            89999999999999999987766543  4667799999999667899999999999999999876 47888899999999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ++|+|++..+|++|+.|++|+|||+++++ ++ ...+|...|++++|+|.++.+|++++.||.|++|++..+.
T Consensus       275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~-~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          275 LAYSYHSSPFLASISEDCTVAVLDADFSE-VF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTSCE-EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEEcCCCCCEEEEEeCCCEEEEEECCCCc-Ee-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            99999987689999999999999999876 33 3457999999999999547899999999999999997653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-52  Score=349.81  Aligned_cols=285  Identities=26%  Similarity=0.396  Sum_probs=256.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..+|++++|+|  ++.++++++.      ||.|++||+..... ..  ....|...|.+++|+|++ .+|++|+.|++|
T Consensus       107 h~~~V~~~~~~p--~~~~l~s~s~------Dg~i~vwd~~~~~~-~~--~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i  174 (410)
T 1vyh_C          107 HRSPVTRVIFHP--VFSVMVSASE------DATIKVWDYETGDF-ER--TLKGHTDSVQDISFDHSG-KLLASCSADMTI  174 (410)
T ss_dssp             CSSCEEEEEECS--SSSEEEEEES------SSCEEEEETTTCCC-CE--EECCCSSCEEEEEECTTS-SEEEEEETTSCC
T ss_pred             cCCcEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCcE-EE--EEeccCCcEEEEEEcCCC-CEEEEEeCCCeE
Confidence            778999999999  5667777765      99999999987652 22  223688999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||+...   +.+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.+|...|.++.++|+ +.++
T Consensus       175 ~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l  249 (410)
T 1vyh_C          175 KLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLI  249 (410)
T ss_dssp             CEEETTSS---CEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEE
T ss_pred             EEEeCCCC---ceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC-CCEE
Confidence            99999765   67778889999999999999988 9999999999999999999999999999999999999998 8999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCC-------------------CcEEEEEecCCcEEEEEccCCC
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYD-------------------DCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~-------------------~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      ++++.|+.|++||+++++....+..|...|.+++|+|..                   +.++++|+.|+.|++||++++.
T Consensus       250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            999999999999999999999999999999999999831                   5689999999999999999866


Q ss_pred             ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121          227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY  306 (317)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  306 (317)
                       ++..+.+|...|++++|+|+++ +|++++.|+.|++||+.+++ .+..+.+|...|++++|+|+ +.+|++|+.||.|+
T Consensus       330 -~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~-~~~l~sgs~D~~i~  405 (410)
T 1vyh_C          330 -CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVK  405 (410)
T ss_dssp             -EEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSS-SSCEEEEETTSEEE
T ss_pred             -eEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCC-CCEEEEEeCCCcEE
Confidence             4788889999999999999998 69999999999999998876 56788999999999999998 78999999999999


Q ss_pred             EEecC
Q 021121          307 VWQQG  311 (317)
Q Consensus       307 ~w~~~  311 (317)
                      +|+++
T Consensus       406 vW~~r  410 (410)
T 1vyh_C          406 VWECR  410 (410)
T ss_dssp             EEC--
T ss_pred             EEeCC
Confidence            99863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.7e-52  Score=337.52  Aligned_cols=289  Identities=19%  Similarity=0.253  Sum_probs=256.5

Q ss_pred             ecCcceeEEEEecCC--CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            5 KTPFNGYSVKFSPFY--ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~--~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      .|...|++++|+|+.  ++.++++++.      |+.|++|++..... .......+|...|.+++|+|++ .++++++.|
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~------D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D  101 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSL------DDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTL-PIAASSSLD  101 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEET------TSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSS-SEEEEEETT
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcC------CCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCC-CEEEEEeCC
Confidence            488999999999842  3456666665      99999999976541 1122234789999999999998 599999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      +.|++||+..+   +.+..+..|...+.+++|+|+++ +|++++.||.|++||+++++....+..+...+.+++|+|+ +
T Consensus       102 ~~i~lWd~~~~---~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd-g  176 (321)
T 3ow8_A          102 AHIRLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-G  176 (321)
T ss_dssp             SEEEEEETTTT---EEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT-S
T ss_pred             CcEEEEECCCC---CEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCC-C
Confidence            99999999876   67777888899999999999998 9999999999999999999999999989999999999999 8


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      ++|++++.||.|++||+++++.+..+.+|..+|.+++|+| ++++|++++.|+.|++||+++.+ ....+.+|...|.++
T Consensus       177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~  254 (321)
T 3ow8_A          177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLNV  254 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEEE
Confidence            9999999999999999999999999999999999999999 99999999999999999999866 477889999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +|+|+++ +|++++.|+.|++||+.+++ ++..+.+|...|.+++|+|+ +.+|++++.||.|++||..
T Consensus       255 ~~sp~~~-~l~s~s~D~~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~-g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          255 AFCPDDT-HFVSSSSDKSVKVWDVGTRT-CVHTFFDHQDQVWGVKYNGN-GSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTT-SSEEEEEETTCCEEEEECC
T ss_pred             EECCCCC-EEEEEeCCCcEEEEeCCCCE-EEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEeCC
Confidence            9999998 79999999999999999876 66788899999999999998 7899999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-49  Score=327.30  Aligned_cols=284  Identities=22%  Similarity=0.331  Sum_probs=249.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||+..... .  .....|...|.+++|+|++ .+|++|+.|+.|
T Consensus        54 H~~~v~~~~~s~--d~~~l~s~s~------Dg~v~iWd~~~~~~-~--~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v  121 (340)
T 1got_B           54 HLAKIYAMHWGT--DSRLLLSASQ------DGKLIIWDSYTTNK-V--HAIPLRSSWVMTCAYAPSG-NYVACGGLDNIC  121 (340)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TTEEEEEETTTCCE-E--EEEECSSSCEEEEEECTTS-SEEEEEETTCEE
T ss_pred             CCCceEEEEECC--CCCEEEEEeC------CCcEEEEECCCCCc-c--eEeecCCccEEEEEECCCC-CEEEEEeCCCeE
Confidence            778999999999  6777777776      99999999987652 2  2223578889999999998 699999999999


Q ss_pred             EEEEeCCCCC-CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPT-ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++|++..... ......+.+|...|.++.|++++  .+++++.|+.|++||+++++.+..+.+|...|.+++|+|+ +.+
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~  198 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRL  198 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC-CCE
Confidence            9999976421 23445677899999999999886  5899999999999999999999999999999999999998 889


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~  242 (317)
                      +++++.|+.|++||+++++....+.+|...|.+++|+| ++++|++++.|+.|++||+++.+. +..+.  .+...|+++
T Consensus       199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~  276 (340)
T 1got_B          199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSV  276 (340)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEE
T ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcE-EEEEccCCcccceEEE
Confidence            99999999999999999999999999999999999999 999999999999999999998653 44443  233579999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +|+|+++ +|++|+.|+.|++||+.+.+ ....+.+|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus       277 ~~s~~g~-~l~~g~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          277 SFSKSGR-LLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSS-EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEEC
T ss_pred             EECCCCC-EEEEECCCCeEEEEEcccCc-EeeEeecCCCcEEEEEEcCC-CCEEEEEcCCccEEecC
Confidence            9999998 79999999999999998876 56788999999999999998 88999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-50  Score=331.80  Aligned_cols=296  Identities=21%  Similarity=0.295  Sum_probs=244.3

Q ss_pred             cCc-ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPF-NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~-~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |.. .|.+++|+|  ++.++++++.      ||.|+|||+.............+|...|.+++|+|++ .+|++|+.|+.
T Consensus        14 h~~~~v~~l~~sp--~g~~las~~~------D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~   84 (345)
T 3fm0_A           14 HPDSRCWFLAWNP--AGTLLASCGG------DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDAT   84 (345)
T ss_dssp             STTSCEEEEEECT--TSSCEEEEET------TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             CCCCcEEEEEECC--CCCEEEEEcC------CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCc
Confidence            555 899999999  5777777775      9999999998664222222234688999999999998 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc---eeEEeeccccceEEEEEecCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT---SVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      |++|++... ....+..+.+|...|.+++|+|+++ +|++++.|+.|++||++++.   .+..+..|...|.+++|+|+ 
T Consensus        85 v~iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~-  161 (345)
T 3fm0_A           85 TCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-  161 (345)
T ss_dssp             EEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS-
T ss_pred             EEEEEccCC-CeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC-
Confidence            999998754 2345667889999999999999998 99999999999999998764   45667789999999999999 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc------------
Q 021121          162 SDVFCSASGDCTLRIWDVREMG--STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV------------  227 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------  227 (317)
                      +.+|++++.|+.|++||.++++  ....+.+|...|.+++|+| ++++|++++.|+.|++||......            
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence            8899999999999999998775  3467788999999999999 999999999999999999754321            


Q ss_pred             --cEEEEec-CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc--------eeeeeecccceeEeEEEEeccCCeE
Q 021121          228 --PIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA--------LVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       228 --~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                        ++..+.+ |...|.+++|+|++. +|++++.|+.|++|+......        ......+|...|++++|+|+++.+|
T Consensus       241 ~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          241 WKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             EEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             cceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence              1223333 888999999999998 699999999999999876431        1123357899999999999855699


Q ss_pred             EEeecCCcEEEEecCCCCC
Q 021121          297 ASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       297 ~s~~~dg~i~~w~~~~~~~  315 (317)
                      ++|+.||.|++|++...++
T Consensus       320 aS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          320 ASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EEEETTSCEEEEEECC---
T ss_pred             EEcCCCCcEEEEEecCCCC
Confidence            9999999999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-49  Score=320.16  Aligned_cols=288  Identities=21%  Similarity=0.282  Sum_probs=246.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||+..... .  .....|..+|.+++|+|++ ++|++|+.|+.|
T Consensus        12 h~~~V~~~~fsp--~~~~l~s~~~------dg~v~lWd~~~~~~-~--~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i   79 (304)
T 2ynn_A           12 RSDRVKGIDFHP--TEPWVLTTLY------SGRVELWNYETQVE-V--RSIQVTETPVRAGKFIARK-NWIIVGSDDFRI   79 (304)
T ss_dssp             ECSCEEEEEECS--SSSEEEEEET------TSEEEEEETTTTEE-E--EEEECCSSCEEEEEEEGGG-TEEEEEETTSEE
T ss_pred             CCCceEEEEECC--CCCEEEEEcC------CCcEEEEECCCCce-e--EEeeccCCcEEEEEEeCCC-CEEEEECCCCEE
Confidence            778999999999  5666777665      99999999987541 1  2223578899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++||+.++   +.+..+.+|...|.+++|+|+++ ++++|+.||.|++||++++ .....+.+|...|.+++|+|.++.+
T Consensus        80 ~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           80 RVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EEEETTTC---CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             EEEECCCC---cEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            99999876   67788899999999999999998 9999999999999999887 4456788899999999999966899


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +++|+.|+.|++||+++......+. .+...+..+.|+|. ++.+|++++.|+.|++||+++.+ ++..+.+|...|.++
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~h~~~v~~~  234 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFA  234 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-cceeeCCCCCCEEEE
Confidence            9999999999999998877666554 45678899999873 56799999999999999999865 588899999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC-eEEEeecCCcEEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~  313 (317)
                      +|+|+++ +|++|+.||.|++||+.+.+ +...+..|...+.+++|+|+++. ++++|+.|| +.+|++..+
T Consensus       235 ~~~p~~~-~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          235 VFHPTLP-IIISGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EECSSSS-EEEEEETTSCEEEEETTTCC-EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             EECCCCC-EEEEEcCCCeEEEEECCCCc-eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            9999998 79999999999999999876 66788889899999999998544 477776555 778888654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.7e-49  Score=323.60  Aligned_cols=286  Identities=22%  Similarity=0.315  Sum_probs=249.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||......   ......+...|.+++|+|++ .++++|+.|+.+
T Consensus        63 H~~~V~~~~~s~--d~~~l~s~s~------Dg~v~vWd~~~~~~---~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i  130 (354)
T 2pbi_B           63 HGNKVLCMDWCK--DKRRIVSSSQ------DGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSG-CAIACGGLDNKC  130 (354)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TSEEEEEETTTCCE---EEEEECSSSCCCEEEECTTS-SEEEEESTTSEE
T ss_pred             CCCeEEEEEECC--CCCEEEEEeC------CCeEEEEECCCCCc---ceEEecCCCCEEEEEECCCC-CEEEEeeCCCCE
Confidence            788999999999  5677777776      99999999876642   12223577789999999998 699999999999


Q ss_pred             EEEEeCCCCC---CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC-C
Q 021121           86 KIYDTALPPT---ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR-H  161 (317)
Q Consensus        86 ~v~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~  161 (317)
                      ++|++.....   ......+..|...|.+++|+|++. .|++++.|++|++||+++++.+..+.+|...|.+++|+|. +
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence            9999875421   234456678999999999999987 8999999999999999999999999999999999999985 2


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCce
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAV  239 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v  239 (317)
                      +++|++|+.||.|++||+++++.+..+..|...|.+++|+| ++++|++++.|+.|++||++..+. +..+..  +...+
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~  287 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGA  287 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccce
Confidence            58999999999999999999999999999999999999999 999999999999999999998653 444443  33478


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      .+++|+|+++ +|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|+ +.+|++|+.||.|++|+
T Consensus       288 ~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~spd-g~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          288 SSVDFSLSGR-LLFAGYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPD-GTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEC
T ss_pred             eEEEEeCCCC-EEEEEECCCcEEEEECCCCc-eEEEEECCCCcEEEEEECCC-CCEEEEEcCCCCEEecC
Confidence            9999999998 79999999999999998876 56778899999999999999 88999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.7e-50  Score=333.48  Aligned_cols=294  Identities=22%  Similarity=0.323  Sum_probs=250.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||+.....   ......|...|.+++|+|++ .+|++|+.|+.+
T Consensus        65 H~~~V~~~~~sp--~~~~l~s~s~------D~~v~iWd~~~~~~---~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v  132 (380)
T 3iz6_a           65 HSGKVYSLDWTP--EKNWIVSASQ------DGRLIVWNALTSQK---THAIKLHCPWVMECAFAPNG-QSVACGGLDSAC  132 (380)
T ss_dssp             CSSCEEEEEECT--TSSCEEEEET------TSEEEEEETTTTEE---EEEEECCCTTCCCCEECTTS-SEEEECCSSSCC
T ss_pred             cccEEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCcc---ceEEecCCCCEEEEEECCCC-CEEEEeeCCCcE
Confidence            788999999999  5667777775      99999999977642   22233688899999999998 699999999999


Q ss_pred             EEEEeCCCC----CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-----eccccceEEEE
Q 021121           86 KIYDTALPP----TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-----KEHAYCVYNAT  156 (317)
Q Consensus        86 ~v~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~  156 (317)
                      ++|++....    .......+.+|.+.|.++.|.|++...|++|+.|+.|++||+++++.+..+     .+|...|.+++
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            999987532    223445678999999999999987668999999999999999999988877     56888999999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCC-CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      |+|.+++++++|+.|+.|++||++ ..+.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++. +..+..+
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~  290 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQ-LQVYNRE  290 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEE-EEEECCC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcE-EEEeccc
Confidence            998658999999999999999998 4577788889999999999999 999999999999999999998764 5554433


Q ss_pred             C-------CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee----ecccceeEeEEEEeccCCeEEEeecCCc
Q 021121          236 G-------YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY----DHHTEFAVGVDMSVLVEGLLASTGWDEL  304 (317)
Q Consensus       236 ~-------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~  304 (317)
                      .       ..|++++|+|+++ +|++|+.||.|++||+.+++. ...+    .+|.+.|.+++|+|+ +.+|++|+.||.
T Consensus       291 ~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~  367 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSD-GSALCTGSWDKN  367 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSS-SSEEEEECTTSC
T ss_pred             ccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEEEECCC-CCEEEEeeCCCC
Confidence            2       3489999999999 799999999999999988763 3333    679999999999999 889999999999


Q ss_pred             EEEEecCCCCCC
Q 021121          305 VYVWQQGMDPRA  316 (317)
Q Consensus       305 i~~w~~~~~~~~  316 (317)
                      |++|++....+.
T Consensus       368 i~iW~~~~~~~i  379 (380)
T 3iz6_a          368 LKIWAFSGHRKI  379 (380)
T ss_dssp             EEEEECCSSSSC
T ss_pred             EEEEecCCCccc
Confidence            999999876553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-48  Score=319.83  Aligned_cols=291  Identities=21%  Similarity=0.326  Sum_probs=229.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |..+|.+++|+|  +  ++++++.      ||.|++|++.............. |...|.+++|+|++ .+|++|+.|+.
T Consensus        13 h~~~v~~~~~s~--~--~las~~~------D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~   81 (330)
T 2hes_X           13 YKEKIWSFDFSQ--G--ILATGST------DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDST   81 (330)
T ss_dssp             CSSCEEEEEEET--T--EEEEEES------SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             CCCceeeeccCC--C--EEEEEcC------CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCc
Confidence            778999999999  4  4555554      99999999986542222211123 88899999999998 69999999999


Q ss_pred             EEEEEeCCCC----CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeeccccceEEEE
Q 021121           85 VKIYDTALPP----TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAYCVYNAT  156 (317)
Q Consensus        85 i~v~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~  156 (317)
                      |++|++....    .......+.+|...|.+++|+|++. +|++|+.|+.|++||++..    +.+..+..|...|.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999986421    1234566789999999999999998 9999999999999999432    45677888999999999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCC--CceeeeccCccceEEEEecCCC--CcEEEEEecCCcEEEEEccCCC------
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYD--DCLIASASVDKSIKIWDVRNYR------  226 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~v~d~~~~~------  226 (317)
                      |+|+ +.+|++++.|+.|++||.+++  +++..+.+|...|.+++|+| +  +..|++++.|++|++||++...      
T Consensus       161 ~~p~-~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~  238 (330)
T 2hes_X          161 WHPS-EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE  238 (330)
T ss_dssp             ECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred             ECCC-CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence            9998 899999999999999999876  56778889999999999999 6  6789999999999999997642      


Q ss_pred             -ccEEEEec-CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc--ceeeeeecccc-eeEeEEEEec-cCCeEEEee
Q 021121          227 -VPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTE-FAVGVDMSVL-VEGLLASTG  300 (317)
Q Consensus       227 -~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~-~~~~l~s~~  300 (317)
                       .....+.. |...|.+++|++++  +|++++.||.|++||..+++  ........|.. .|.+++|+|. ++.+|++|+
T Consensus       239 ~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s  316 (330)
T 2hes_X          239 WVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG  316 (330)
T ss_dssp             EEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred             eEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence             12333444 88999999999765  69999999999999988764  22233457776 8999999993 278999999


Q ss_pred             cCCcEEEEecCC
Q 021121          301 WDELVYVWQQGM  312 (317)
Q Consensus       301 ~dg~i~~w~~~~  312 (317)
                      .||.|++|++..
T Consensus       317 ~Dg~v~~W~~~~  328 (330)
T 2hes_X          317 DDGIVNFWSLEK  328 (330)
T ss_dssp             TTSEEEEEEC--
T ss_pred             CCCcEEEEEecc
Confidence            999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-47  Score=322.05  Aligned_cols=291  Identities=19%  Similarity=0.263  Sum_probs=245.5

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee----------------cCCCCeeEEE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----------------DTADGVYDLA   67 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----------------~~~~~v~~~~   67 (317)
                      +.|...|.+++|+|  ++.+++++.       ++.+++|++..+.. ...+...                .+...|++++
T Consensus        61 ~~h~~~V~~v~fsp--dg~~la~g~-------~~~v~i~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  130 (393)
T 1erj_A           61 LDHTSVVCCVKFSN--DGEYLATGC-------NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVC  130 (393)
T ss_dssp             EECSSCCCEEEECT--TSSEEEEEC-------BSCEEEEETTTCCE-EEEECC-----------------CCCCBEEEEE
T ss_pred             cCCCCEEEEEEECC--CCCEEEEEc-------CCcEEEEEecCCCE-EEEecCccccccccccccccccCCCceeEEEEE
Confidence            45888999999999  677777765       67999999987652 1111100                1222499999


Q ss_pred             ecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec
Q 021121           68 WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE  147 (317)
Q Consensus        68 ~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  147 (317)
                      |+|++ .+|++|+.|+.|++||+...   +....+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+. 
T Consensus       131 ~s~dg-~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-  204 (393)
T 1erj_A          131 FSPDG-KFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS-  204 (393)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             ECCCC-CEEEEEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEE-
Confidence            99998 69999999999999999865   67778889999999999999998 99999999999999999998877776 


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-------ccCccceEEEEecCCCCcEEEEEecCCcEEEE
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-------PAHEFEILACDWNKYDDCLIASASVDKSIKIW  220 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~  220 (317)
                      +...+.+++|+|.++.++++++.||.|++||+++++.+..+       .+|...|.+++|+| ++++|++++.|+.|++|
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEE
Confidence            56679999999955899999999999999999998877665       46888999999999 99999999999999999


Q ss_pred             EccCCC-----------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEE
Q 021121          221 DVRNYR-----------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       221 d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  289 (317)
                      |+++..           .+...+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~-~~~~l~~h~~~v~~v~~~  361 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVA  361 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEC
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCe-EEEEECCCCCCEEEEEec
Confidence            997642           23456778999999999999998 79999999999999999886 567889999999999998


Q ss_pred             ec-----cCCeEEEeecCCcEEEEecCCC
Q 021121          290 VL-----VEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       290 ~~-----~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.     .+.+|++|+.||.|++|++...
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            63     1579999999999999998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-47  Score=310.81  Aligned_cols=288  Identities=20%  Similarity=0.248  Sum_probs=242.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eee-eeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TEL-VAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      |...|.+++|+|+. +.++++++.      |+.|++|++....... ..+ ...+|...|.+++|+|++ .+|++|+.|+
T Consensus        16 H~~~V~~l~~~~~~-~~~l~s~s~------D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~   87 (319)
T 3frx_A           16 HNGWVTSLATSAGQ-PNLLLSASR------DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDK   87 (319)
T ss_dssp             CSSCEEEEEECSSC-TTEEEEEET------TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             ccceEEEEEccCCC-ccEEEEecC------CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCC
Confidence            78899999999953 345555554      9999999997543221 122 233789999999999998 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC--
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH--  161 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--  161 (317)
                      +|++||+.++   +.+..+.+|...|.+++|+|++. ++++++.|+.|++||++ ++.+..+.+|...+.++.|.|..  
T Consensus        88 ~v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           88 TLRLWDVATG---ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEEEETTTT---EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             EEEEEECCCC---CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence            9999999876   67788899999999999999988 99999999999999996 56777888999999999999852  


Q ss_pred             ---CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc
Q 021121          162 ---SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA  238 (317)
Q Consensus       162 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  238 (317)
                         +..+++++.|+.|++||+++.+....+.+|...|.+++|+| ++++|++++.|+.|++||+++.+ ++..+.. ...
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~  239 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKK-AMYTLSA-QDE  239 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTE-EEEEEEC-CSC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-EEEEecC-CCc
Confidence               44899999999999999999888888999999999999999 99999999999999999999865 3666654 468


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee--------ecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY--------DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      |.+++|+|++. +|++++ ++.+++|++.... ....+        ..|...+.+++|+|+ +++|++|+.||.|++|++
T Consensus       240 v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          240 VFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSAD-GQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEEEECSSSS-EEEEEE-TTEEEEEEETTEE-EEEEECCCCTTCCGGGCCCEEEEEECTT-SSEEEEEETTSCEEEEEE
T ss_pred             EEEEEEcCCCC-EEEEEc-CCCcEEEEeCcCe-eeeccCccccccccCcCcceeEEEECCC-CCEEEEeecCceEEEEEE
Confidence            99999999998 577766 5569999988754 22222        235667999999999 899999999999999998


Q ss_pred             CCC
Q 021121          311 GMD  313 (317)
Q Consensus       311 ~~~  313 (317)
                      .+.
T Consensus       316 ~t~  318 (319)
T 3frx_A          316 MTA  318 (319)
T ss_dssp             EEC
T ss_pred             eec
Confidence            653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-46  Score=305.83  Aligned_cols=284  Identities=22%  Similarity=0.399  Sum_probs=245.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++|++.....   ......|...|.+++|+|++ .+|++|+.|+.|
T Consensus        22 h~~~v~~~~~s~--~~~~l~s~~~------dg~i~iw~~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i   89 (312)
T 4ery_A           22 HTKAVSSVKFSP--NGEWLASSSA------DKLIKIWGAYDGKF---EKTISGHKLGISDVAWSSDS-NLLVSASDDKTL   89 (312)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             cCCcEEEEEECC--CCCEEEEeeC------CCeEEEEeCCCccc---chhhccCCCceEEEEEcCCC-CEEEEECCCCEE
Confidence            778999999999  5666776665      99999999976642   12233688899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||+..+   +.+..+.+|...|.+++|+|++. ++++++.||.|++||+++++.+..+..|..+|.+++|+|+ +.++
T Consensus        90 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  164 (312)
T 4ery_A           90 KIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLI  164 (312)
T ss_dssp             EEEETTTC---CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEE
T ss_pred             EEEECCCC---cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC-CCEE
Confidence            99999876   67778889999999999999988 9999999999999999999999999999999999999998 8899


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee--EE
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR--KV  242 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~--~~  242 (317)
                      ++++.||.|++||+++++.+..+. .+..++..++|+| +++++++++.|+.|++||+++.+ .+..+.+|.....  ..
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~  242 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFA  242 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTE-EEEEECSSCCSSSCCCE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCc-EEEEEEecCCceEEEEE
Confidence            999999999999999988777654 4566799999999 99999999999999999999866 4677777765433  23


Q ss_pred             Eec-CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee--cCCcEEEEecC
Q 021121          243 KFS-PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG--WDELVYVWQQG  311 (317)
Q Consensus       243 ~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~~w~~~  311 (317)
                      .++ +++. +|++|+.||.|++||+.+++ ++..+.+|...|.+++|+|+ +.+|++++  .|+.|++|+.+
T Consensus       243 ~~~~~~~~-~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          243 NFSVTGGK-WIVSGSEDNLVYIWNLQTKE-IVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSC-EEEECCTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECSS-SSEEEEEECTTTCCEEEEECC
T ss_pred             EEEeCCCc-EEEEECCCCEEEEEECCCch-hhhhhhccCCcEEEEeecCc-CCceEEEEccCCccEEEecCC
Confidence            444 4555 79999999999999999876 67889999999999999998 78899887  69999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.5e-47  Score=306.44  Aligned_cols=248  Identities=17%  Similarity=0.327  Sum_probs=225.2

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.+.|++++|+|++ .+|++|+.||.|++||+.++   ..+..+..|..+|.+++|+|+++ +|++|+.|+.|++||+
T Consensus        10 ~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             EEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEET
T ss_pred             cCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence            3788999999999998 69999999999999999866   67778889999999999999998 9999999999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC-ceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-STMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      ++++.+..+.+|...|.+++|+|+ +.++++++.|++|++||++++. ....+.+|...|.+++|+|.++.+|++|+.|+
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            999999999999999999999999 8899999999999999998874 45667889999999999996788999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecC--CCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccC
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP--HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE  293 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  293 (317)
                      .|++||++...........|...+..+.|+|  +++ +|++++.|+.|++||+++++ ++..+.+|...|..++|+|+ +
T Consensus       164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p~-~  240 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPT-L  240 (304)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSS-S
T ss_pred             eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCCc-cceeeCCCCCCEEEEEECCC-C
Confidence            9999999887765555566778899999987  555 79999999999999999876 67889999999999999998 7


Q ss_pred             CeEEEeecCCcEEEEecCCC
Q 021121          294 GLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+|++|+.||.|++||+.+.
T Consensus       241 ~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          241 PIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             SEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEcCCCeEEEEECCCC
Confidence            89999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-46  Score=308.53  Aligned_cols=289  Identities=18%  Similarity=0.267  Sum_probs=235.5

Q ss_pred             cCcceeEEEE-----ecCCCCeEEEEEecccccccCceEEEEecCCCCCc----ceeeeeecCCCCeeEEEecCCCCCeE
Q 021121            6 TPFNGYSVKF-----SPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA----LTELVAFDTADGVYDLAWSESHDSLL   76 (317)
Q Consensus         6 ~~~~v~~~~~-----~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l   76 (317)
                      |...|++++|     +|. ++.++++++.      |+.|++||+......    .......+|...|.+++|+|++ .++
T Consensus        20 H~~~V~~~~~~~s~~~~~-d~~~l~sgs~------D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l   91 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENE-DSPVLISGSR------DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFA   91 (343)
T ss_dssp             CSSCEEEEEECCCSSTTC-CCCEEEEEET------TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEE
T ss_pred             chhhhhheeeEEEeecCC-CCCEEEEEcC------CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEE
Confidence            7889999999     553 4666666665      999999999764321    1122234788999999999998 699


Q ss_pred             EEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---ccccceE
Q 021121           77 IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---EHAYCVY  153 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~  153 (317)
                      ++|+.|++|++||+.++   +.+..+.+|...|.+++|+|++. +|++++.|+.|++||+.. .......   .|...|.
T Consensus        92 ~s~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEEETTSEEEEEETTSS---CEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEE
T ss_pred             EEEcCCCcEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccC-CceeeeecccCCCceee
Confidence            99999999999999876   67778889999999999999998 999999999999999974 3333333   6788999


Q ss_pred             EEEEecCC---------CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          154 NATWNPRH---------SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       154 ~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      +++|+|++         +.++++++.||.|++||. +.+....+..|...|.+++|+| ++++|++|+.|+.|++||++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSC
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCC
Confidence            99999983         268999999999999994 4566677888999999999999 999999999999999999965


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-eee-----------ecccceeEeEEEEecc
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-GRY-----------DHHTEFAVGVDMSVLV  292 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~-----------~~~~~~v~~~~~~~~~  292 (317)
                      ...+...+. +...|.+++|+|++. +++ ++.|+.|++||+.+.+... ..+           .+|...|.+++|+|+ 
T Consensus       245 ~~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-  320 (343)
T 2xzm_R          245 LTYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL-  320 (343)
T ss_dssp             CSSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS-
T ss_pred             Ccccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC-
Confidence            554444443 456799999999987 565 4568889999998765221 122           267788999999999 


Q ss_pred             CCeEEEeecCCcEEEEecCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.+|++|+.||.|++|++.+.
T Consensus       321 g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          321 GKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SCCEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEecCCceEEEEEEEcc
Confidence            789999999999999998753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.7e-47  Score=310.30  Aligned_cols=252  Identities=19%  Similarity=0.294  Sum_probs=216.9

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-eeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      +++...|.+++|+|  ++.+++++.       ||.|+|||+...+.... .....+|...|++++|+|++ .+|++|+.|
T Consensus        79 ~~~~~~v~~~~~s~--d~~l~~~s~-------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d  148 (344)
T 4gqb_B           79 VQTEAGVADLTWVG--ERGILVASD-------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKD  148 (344)
T ss_dssp             EEESSCEEEEEEET--TTEEEEEET-------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             eccCCCEEEEEEeC--CCeEEEEEC-------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCC
Confidence            34567899999999  677776655       99999999987764332 23344799999999999998 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEEEecC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPR  160 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~  160 (317)
                      ++|++||+.++   +.+..+.+|...|.+++|+|++..++++++.|+.|++||+++++....+.  .+...+.+++|+|+
T Consensus       149 ~~i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          149 ICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             SCEEEEETTTT---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             CeEEEEECCCC---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence            99999999876   78888999999999999999987789999999999999999998887764  34567999999998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR  240 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~  240 (317)
                      +++++++|+.||.|++||+++++.+..+.+|...|++++|+|...++|++|+.|++|++||+++++  +..+.+|...|+
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~  303 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--LFRSQAHRDFVR  303 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--EEEECCCSSCEE
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--EEEEcCCCCCEE
Confidence            788999999999999999999999999999999999999999334689999999999999998765  456789999999


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      +++|+|+++.+|++++.|++|++|++.+..
T Consensus       304 ~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          304 DATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999998788899999999999997754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.6e-46  Score=330.36  Aligned_cols=286  Identities=16%  Similarity=0.147  Sum_probs=240.8

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ...+.+++|+|  ++..++++.       ++.|++|++..... .  ....+|...|++++|+|++ .+|++|+.||+|+
T Consensus        18 ~g~~~~~~~sp--dg~~l~~~~-------~~~v~l~~~~~~~~-~--~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~   84 (611)
T 1nr0_A           18 RGTAVVLGNTP--AGDKIQYCN-------GTSVYTVPVGSLTD-T--EIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVR   84 (611)
T ss_dssp             TTCCCCCEECT--TSSEEEEEE-------TTEEEEEETTCSSC-C--EEECCCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             cCceeEEeeCC--CCCEEEeCC-------CCEEEEecCCCccc-C--eEecCCCCceEEEEECCCC-cEEEEEeCCCCEE
Confidence            45678899999  566666655       56999999975442 2  2223789999999999998 6999999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC----CEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD----DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      |||+..+ .......+..|.++|.+++|+|+++ .|++++.+    +.|++||  .++....+.+|...|.+++|+|++.
T Consensus        85 lWd~~~~-~~~~~~~~~~~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~  160 (611)
T 1nr0_A           85 IWDTTQT-THILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP  160 (611)
T ss_dssp             EEESSST-TCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred             EeECCCC-cceeeEeecccCCceEEEEECCCCC-EEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCC
Confidence            9998653 2233456788999999999999998 78877754    4788887  4666778889999999999999955


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-------cC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-------GH  235 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~  235 (317)
                      ..|++++.|++|++||.++++....+.+|...|.+++|+| ++++|++++.|+.|++||.++++. ...+.       +|
T Consensus       161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h  238 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAH  238 (611)
T ss_dssp             CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSS
T ss_pred             eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcE-eeeecccccccccc
Confidence            5799999999999999998888888999999999999999 999999999999999999988664 55553       79


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccce------------------------------------------e
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL------------------------------------------V  273 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------------------------------------------~  273 (317)
                      ...|.+++|+|+++ +|++++.|++|++||+.+++..                                          .
T Consensus       239 ~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~  317 (611)
T 1nr0_A          239 SGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID  317 (611)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc
Confidence            99999999999998 7999999999999999875421                                          1


Q ss_pred             eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          274 GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       274 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+.+|...|++++|+|+ +++|++++.|+.|++||+...
T Consensus       318 ~~~~gh~~~v~~l~~spd-g~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          318 QVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred             eEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCC
Confidence            234578899999999998 899999999999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-47  Score=322.54  Aligned_cols=308  Identities=19%  Similarity=0.336  Sum_probs=252.3

Q ss_pred             CceecCcceeEEEEecCCCCeEEEEEecc----cccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEE
Q 021121            2 PVFKTPFNGYSVKFSPFYESRLAVATAQN----FGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLI   77 (317)
Q Consensus         2 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~----~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~   77 (317)
                      ..+.+...|.+++|+|++ ..+++++...    .....||.|++||+..... ...+....|...|.+++|+|++ .+|+
T Consensus         7 ~~l~~~~~v~~~~~sp~g-~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~   83 (416)
T 2pm9_A            7 VKLAEFSRTATFAWSHDK-IPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNN-KIIA   83 (416)
T ss_dssp             ---CEEEESCBCCBCSSS-SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-CSCSCCCCCSSCEEEEEECSSS-SCEE
T ss_pred             hhHhhhhhcceEeeCCCC-CCEEEEEecCcccccccCCCCeEEEEEccCCCC-CcEEEEEecCCceEEEEECCCC-CeEE
Confidence            445566789999999952 2255555110    0001289999999987642 1233444688899999999998 6999


Q ss_pred             EEEcCCeEEEEEeCCCCC-CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc------eeEE---eec
Q 021121           78 AAVADGSVKIYDTALPPT-ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT------SVRT---FKE  147 (317)
Q Consensus        78 ~~~~dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~---~~~  147 (317)
                      +|+.||.|++|++..... ......+..|...|.+++|+|++..+|++++.||.|++||+.+++      ....   +..
T Consensus        84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  163 (416)
T 2pm9_A           84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS  163 (416)
T ss_dssp             EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred             EEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence            999999999999986322 246677889999999999999844499999999999999999876      3333   356


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC------ccceEEEEecCCCCcEEEEEecCC---cEE
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH------EFEILACDWNKYDDCLIASASVDK---SIK  218 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~d~---~i~  218 (317)
                      |...|.+++|+|+++.++++++.||.|++||+++++.+..+..+      ...+.+++|+|....++++++.|+   .|+
T Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL  243 (416)
T ss_dssp             SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred             CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence            88899999999987789999999999999999999888888766      788999999993347999999998   999


Q ss_pred             EEEccCCCccEEEEe-cCCCceeEEEecC-CCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          219 IWDVRNYRVPIAVLN-GHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       219 v~d~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      +||+++...+...+. +|...|++++|+| +++ +|++++.|+.|++||+++++ .+..+..|...|.+++|+|+++.+|
T Consensus       244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECTTCTTEE
T ss_pred             EEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCc-cceeecCCCCceEEEEECCCCCCEE
Confidence            999998766677777 8999999999999 676 79999999999999999876 6678889999999999999944899


Q ss_pred             EEeecCCcEEEEecCCCC
Q 021121          297 ASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       297 ~s~~~dg~i~~w~~~~~~  314 (317)
                      ++++.||.|++|++....
T Consensus       322 ~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EECCSSSEEEEEESCCCC
T ss_pred             EEEecCCcEEEEEccCCC
Confidence            999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.5e-45  Score=299.12  Aligned_cols=287  Identities=17%  Similarity=0.202  Sum_probs=249.8

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc--ceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA--LTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      +.|...|.+++|+|  ++.++++++       +|.|++|++......  ...+....|...|.+++|+|++ .+|++++.
T Consensus        48 ~~h~~~v~~~~~~~--~~~~l~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  117 (337)
T 1gxr_A           48 LNHGEVVCAVTISN--PTRHVYTGG-------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGE  117 (337)
T ss_dssp             ECCSSCCCEEEECS--SSSEEEEEC-------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEES
T ss_pred             ccCCCceEEEEEec--CCcEEEEcC-------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcC
Confidence            45888999999999  677777776       789999999875432  2222323688899999999998 69999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ||.|++||+..+ .......+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+..|...+.+++|+|+ 
T Consensus       118 d~~i~~~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-  194 (337)
T 1gxr_A          118 ASTLSIWDLAAP-TPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND-  194 (337)
T ss_dssp             SSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-
T ss_pred             CCcEEEEECCCC-CcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC-
Confidence            999999999865 2224556778999999999999988 9999999999999999999999999999999999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ++++++++.||.|++||+++++.+..+. +...+.+++|+| +++++++++.++.|++||+++.+  ...+..|...|.+
T Consensus       195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~  270 (337)
T 1gxr_A          195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLS  270 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEE
T ss_pred             CCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeE
Confidence            8999999999999999999988777765 677899999999 99999999999999999999865  4567789999999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ++|+|+++ +|++++.||.|++||+.+++..  ....|...+.+++|+|+ +.+|++++.||.|++|++.
T Consensus       271 ~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          271 LKFAYCGK-WFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECTT-SCEEEEEETTSCEEEEEEE
T ss_pred             EEECCCCC-EEEEecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECCC-CCEEEEecCCCeEEEEEEe
Confidence            99999998 7999999999999999988743  33457889999999999 7899999999999999973

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-47  Score=319.55  Aligned_cols=302  Identities=17%  Similarity=0.263  Sum_probs=251.4

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      .+.+...|.+++|+|  ++.++++++.      ||.|++|++....... .......|...|.+++|+|++..+|++++.
T Consensus        63 ~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  134 (416)
T 2pm9_A           63 SLQVDSKFNDLDWSH--NNKIIAGALD------NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN  134 (416)
T ss_dssp             CCCCSSCEEEEEECS--SSSCEEEEES------SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS
T ss_pred             EEecCCceEEEEECC--CCCeEEEEcc------CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC
Confidence            355788999999999  5666666665      8999999998732212 222333688999999999984479999999


Q ss_pred             CCeEEEEEeCCCC------CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc------c
Q 021121           82 DGSVKIYDTALPP------TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH------A  149 (317)
Q Consensus        82 dg~i~v~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~  149 (317)
                      ||.|++||+....      ..........|...|.+++|+|++..++++++.||.|++||+++++.+..+..+      .
T Consensus       135 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK  214 (416)
T ss_dssp             SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred             CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence            9999999998763      222233456799999999999995559999999999999999999988888766      7


Q ss_pred             cceEEEEEecCCCCeEEEEeCCC---eEEEEeCCCC-Cceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          150 YCVYNATWNPRHSDVFCSASGDC---TLRIWDVREM-GSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      ..+.+++|+|++..++++++.|+   .|++||++++ +....+. .|...+.+++|+|.++++|++++.|+.|++||+++
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            88999999999668999999999   9999999986 5667777 89999999999987789999999999999999998


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee-----------------------------
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-----------------------------  275 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-----------------------------  275 (317)
                      .+ ++..+..|...|++++|+|+++.+|++++.|+.|++||+.+.......                             
T Consensus       295 ~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (416)
T 2pm9_A          295 AE-QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV  373 (416)
T ss_dssp             CC-EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred             Cc-cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence            76 478888999999999999999448999999999999999876522111                             


Q ss_pred             -----eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          276 -----YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       276 -----~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                           ...|..++.+++|+|+ +++|++++.||.|++|++.+++
T Consensus       374 ~~~~~~~~~~~~~~~~~~s~d-g~~la~~~~d~~v~~w~~~~~~  416 (416)
T 2pm9_A          374 FHLQAPTWYGEPSPAAHWAFG-GKLVQITPDGKGVSITNPKISG  416 (416)
T ss_dssp             SCCCCCSTTCCCSCCCEEETT-TEEECBCTTSSCBCCBCCCCC-
T ss_pred             ccccCCccccCCccceEEeeC-CeEEEEeCCCCeEEEEEeccCC
Confidence                 0115677889999999 8999999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-45  Score=325.63  Aligned_cols=288  Identities=26%  Similarity=0.361  Sum_probs=244.5

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC--
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD--   82 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--   82 (317)
                      .|...|++++|+|  ++.++++++.      ||.|+|||+....... ......|...|.+++|+|++ ..|++++.+  
T Consensus        57 ~h~~~v~~~~~sp--dg~~lasg~~------d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~  126 (611)
T 1nr0_A           57 EHSHQTTVAKTSP--SGYYCASGDV------HGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSES-KRIAAVGEGRE  126 (611)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEET------TSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTS-CEEEEEECCSS
T ss_pred             CCCCceEEEEECC--CCcEEEEEeC------CCCEEEeECCCCccee-eEeecccCCceEEEEECCCC-CEEEEEECCCC
Confidence            3778999999999  6888888876      9999999997544222 22334688999999999998 577777764  


Q ss_pred             --CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           83 --GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        83 --g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                        +.|++||.  +   .....+.+|...|.+++|+|+++..|++++.|+.|++||..+++....+.+|...|.+++|+|+
T Consensus       127 ~~~~v~~wd~--~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd  201 (611)
T 1nr0_A          127 RFGHVFLFDT--G---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  201 (611)
T ss_dssp             CSEEEEETTT--C---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             ceeEEEEeeC--C---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC
Confidence              46778873  2   4556778999999999999998767999999999999999998888999999999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeec-------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc------
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIP-------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV------  227 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------  227 (317)
                       +++|++++.|+.|++||+++++....+.       +|...|.+++|+| ++++|++++.|++|++||+++++.      
T Consensus       202 -g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          202 -GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             -SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             -CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence             8999999999999999999988877773       6999999999999 999999999999999999986532      


Q ss_pred             ------------------------------------cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121          228 ------------------------------------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       228 ------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                                                          +...+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.
T Consensus       280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE
T ss_pred             CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce
Confidence                                                1223457999999999999998 799999999999999998764


Q ss_pred             eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .......|...|.+++|+++  ..+++++.|+.+++|++..
T Consensus       359 ~~~~~~~h~~~v~~~~~s~~--~~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          359 NRVFPDVHATMITGIKTTSK--GDLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             EECSSCSCSSCEEEEEECTT--SCEEEEETTTEEEEECSSS
T ss_pred             eeecccCCcceEEEEEECCC--CcEEEEEcCCceEEeecCC
Confidence            33223678999999999974  5789999999999999865

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-45  Score=311.43  Aligned_cols=247  Identities=24%  Similarity=0.340  Sum_probs=229.7

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      ..+|..+|++++|+|++ .+|++|+.||.|++||+.++   +....+.+|...|.+++|+|++. +|++|+.|+.|++||
T Consensus       104 l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEe
Confidence            34789999999999998 69999999999999999876   67788899999999999999988 999999999999999


Q ss_pred             cCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      +.+++++..+.+|...|.+++|+|+ ++++++++.|+.|++||++++..+..+.+|...+.++.++| ++.++++++.|+
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~  256 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQ  256 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCC
Confidence            9999999999999999999999998 88999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCC--------------------CCeeEEeeecCCeEEEEecccccceeee
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH--------------------RRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      .|++||+++.+ ....+.+|...|.+++|+|+                    +. +|++|+.|+.|++||+++++ ++..
T Consensus       257 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~-~~~~  333 (410)
T 1vyh_C          257 TVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM-CLMT  333 (410)
T ss_dssp             CEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE-EEEE
T ss_pred             eEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc-eEEE
Confidence            99999999866 47788899999999999996                    44 79999999999999999886 5678


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.+|...|.+++|+|+ +.+|++++.||.|++||+...
T Consensus       334 ~~~h~~~v~~v~~~~~-g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          334 LVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             EECCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTS
T ss_pred             EECCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Confidence            8899999999999998 889999999999999999764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.9e-45  Score=320.13  Aligned_cols=276  Identities=26%  Similarity=0.432  Sum_probs=243.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|+|  ++.++++++.      ||.|++||+....  .  .....|...|.+++|+|++ .++++|+.||.|
T Consensus       302 h~~~v~~~~~~~--~~~~l~t~~~------d~~i~~w~~~~~~--~--~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  368 (577)
T 2ymu_A          302 HSSSVWGVAFSP--DGQTIASASD------DKTVKLWNRNGQH--L--QTLTGHSSSVWGVAFSPDG-QTIASASDDKTV  368 (577)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TSCEEEEETTSCE--E--EEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             CCCCeEEEEECC--CCCEEEEEeC------CCeEEEEeCCCCe--e--EEEeCCCCCEEEEEECCCC-CEEEEEeCCCEE
Confidence            677899999999  5666666665      8999999986543  2  2233688899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++|+..    .+.+..+..|...|.+++|+|+++ +|++++.|+.|++||. +++.+..+..|...|++++|+|+ ++++
T Consensus       369 ~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d-~~~l  441 (577)
T 2ymu_A          369 KLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD-DQTI  441 (577)
T ss_dssp             EEEETT----CCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT-SSEE
T ss_pred             EEEcCC----CCEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC-CCEE
Confidence            999953    256777889999999999999998 8999999999999995 57788889999999999999999 8899


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++++.|+.|++||. +++.+..+..|...|.+++|+| ++++|++++.|+.|++||.. ++ .+..+.+|...|++++|+
T Consensus       442 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~-~~-~~~~~~~h~~~v~~l~~s  517 (577)
T 2ymu_A          442 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFS  517 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETT-SC-EEEEEECCSSCEEEEEEC
T ss_pred             EEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCC-CC-EEEEEeCCCCCEEEEEEc
Confidence            99999999999996 5677788889999999999999 99999999999999999964 33 578889999999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      |+++ +|++++.|+.|++||.. ++ ++..+.+|...|++++|+|+ +++|+|++.|+.|++||
T Consensus       518 ~dg~-~l~s~~~dg~v~lwd~~-~~-~~~~~~~h~~~v~~~~fs~d-g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          518 PDGQ-TIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVWGVAFSPD-GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TTSS-CEEEEETTSEEEEECTT-SC-EEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEEC
T ss_pred             CCCC-EEEEEECcCEEEEEeCC-CC-EEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCEEEEeC
Confidence            9998 79999999999999963 43 67788999999999999999 78999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=301.13  Aligned_cols=248  Identities=21%  Similarity=0.370  Sum_probs=224.7

Q ss_pred             cCCCCeeEEEecCCC---CCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           58 DTADGVYDLAWSESH---DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      .|.+.|.+++|+|++   ..+|++|+.|++|++|++... .......+.+|...|.+++|++++. ++++++.|+.|++|
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLW  107 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEEEE
Confidence            699999999999852   358999999999999999754 2223446789999999999999988 99999999999999


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      |+++++.+..+..+...+.+++|+|+ ++++++++.||.|++||+++++....+..+...+.+++|+| ++++|++++.|
T Consensus       108 d~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~d  185 (321)
T 3ow8_A          108 DLENGKQIKSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAID  185 (321)
T ss_dssp             ETTTTEEEEEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETT
T ss_pred             ECCCCCEEEEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCC
Confidence            99999999999989999999999999 89999999999999999999999888888999999999999 99999999999


Q ss_pred             CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC
Q 021121          215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  294 (317)
                      +.|++||+++++ .+..+.+|..+|++++|+|+++ +|++++.|+.|++||+++.+ ....+.+|...|.+++|+|+ +.
T Consensus       186 g~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~-~~  261 (321)
T 3ow8_A          186 GIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPD-DT  261 (321)
T ss_dssp             SCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTT-SS
T ss_pred             CeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEEEEECCC-CC
Confidence            999999999865 4788899999999999999998 79999999999999999876 56788999999999999998 78


Q ss_pred             eEEEeecCCcEEEEecCCC
Q 021121          295 LLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       295 ~l~s~~~dg~i~~w~~~~~  313 (317)
                      +|++++.|+.|++||+...
T Consensus       262 ~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          262 HFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             EEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCcEEEEeCCCC
Confidence            9999999999999999764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-45  Score=306.91  Aligned_cols=288  Identities=19%  Similarity=0.323  Sum_probs=243.6

Q ss_pred             cCcceeEEEEecC---CCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee---cCCCCeeEEEecCCCC---CeE
Q 021121            6 TPFNGYSVKFSPF---YESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF---DTADGVYDLAWSESHD---SLL   76 (317)
Q Consensus         6 ~~~~v~~~~~~p~---~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~---~~l   76 (317)
                      |..+|++++|+|+   ....++++++       ++.|++|++..... ...+..+   .+...|++++|+|++.   .+|
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~-------~~~v~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVG-------SNRVTLYECHSQGE-IRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEE-------TTEEEEEEECGGGC-EEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             CCCceEEEEEecccCCCCceEEEECC-------CCEEEEEEcCCCcE-EEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            7889999999984   3455666665       77999999986542 2333322   2668899999999832   589


Q ss_pred             EEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEec-CCCCEEEEEcCCCEEEEEEcCCCceeEEe---eccccce
Q 021121           77 IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP-TRRDSFITSSWDDTVKLWTVDRPTSVRTF---KEHAYCV  152 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~v  152 (317)
                      ++|+.||.|++||+...   +.+..+..|...|.+++|+| ++. +|++++.||.|++||+++++.+..+   ..|...|
T Consensus        89 ~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           89 AVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             EEEETTCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             EEecCCCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            99999999999999866   67778889999999999999 665 9999999999999999999988888   6799999


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc----------------------------CccceEEEEecCCC
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA----------------------------HEFEILACDWNKYD  204 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~v~~i~~~~~~  204 (317)
                      .+++|+|+ ++++++++.||.|++||+++++....+..                            |...|.+++|+   
T Consensus       165 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---  240 (366)
T 3k26_A          165 LSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---  240 (366)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---
T ss_pred             eEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---
Confidence            99999998 88999999999999999997755443332                            88899999998   


Q ss_pred             CcEEEEEecCCcEEEEEccCCCc-------------cEEEEecCCCceeEEEecCC--CCeeEEeeecCCeEEEEecccc
Q 021121          205 DCLIASASVDKSIKIWDVRNYRV-------------PIAVLNGHGYAVRKVKFSPH--RRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ++++++++.|+.|++||+++...             .+..+..|...|++++|+|+  ++ +|++++.||.|++||+.++
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSS
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCC
Confidence            56999999999999999987643             35667889999999999999  88 7999999999999999987


Q ss_pred             cc---eeeeeecc--cceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          270 DA---LVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       270 ~~---~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +.   ....+..|  ...|++++|+|+ +.+|++++.||.|++||+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          320 DPHKAKCTTLTHHKCGAAIRQTSFSRD-SSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SGGGCEEEEECCTTCCSCEEEEEECTT-SSEEEEEETTSEEEEEEC-
T ss_pred             CCccccceEEcccccCCceEEEEeCCC-CCeEEEEeCCCEEEEEEec
Confidence            52   33466666  789999999998 8899999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-45  Score=303.06  Aligned_cols=296  Identities=16%  Similarity=0.276  Sum_probs=241.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC--CCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH--DSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg   83 (317)
                      |...|++++|+|+ ...++++++..   .+||.|++||+....  .......+|...|.+++|+|++  ..+|++|+.||
T Consensus        17 h~~~v~~~~~~p~-~~~l~~~~s~~---~~d~~v~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           17 FNYTVFDCKWVPC-SAKFVTMGNFA---RGTGVIQLYEIQHGD--LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEEC-----CCCEEEEEEEECSSS--EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             CCCceEEEEEcCC-CceEEEecCcc---CCCcEEEEEeCCCCc--ccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            7889999999995 33566555420   017899999998765  3444455789999999999983  36999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEE------ecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEeecccc----ce
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADY------NPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAY----CV  152 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~----~v  152 (317)
                      .|++||+...+  .....+..|...|.+++|      +|++. +|++++.||.|++||+++++ ....+..+.+    .+
T Consensus        91 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           91 NLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             CEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             eEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            99999998651  267788899999999965      57777 99999999999999999887 6777765554    79


Q ss_pred             EEEE----EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC--CCcEEEEEecCCcEEEEEccCCC
Q 021121          153 YNAT----WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY--DDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       153 ~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      .+++    |+|+ +.++++++.||.|++||+++++.... ..|...+.+++|+|.  ++.++++++.|+.|++||+++.+
T Consensus       168 ~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          168 WTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            9998    6677 89999999999999999998876444 557889999999985  67899999999999999998754


Q ss_pred             ccEE-----EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc------------------ceeeeeeccccee
Q 021121          227 VPIA-----VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED------------------ALVGRYDHHTEFA  283 (317)
Q Consensus       227 ~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~------------------~~~~~~~~~~~~v  283 (317)
                      . ..     .+.+|...|++++|+|+++.+|++++.||.|++||++...                  ..+..+..|...|
T Consensus       246 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  324 (357)
T 3i2n_A          246 P-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI  324 (357)
T ss_dssp             T-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred             c-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence            3 22     2348999999999999998679999999999999998643                  2456788899999


Q ss_pred             EeEEEEeccCCeEE-EeecCCcEEEEecCCCC
Q 021121          284 VGVDMSVLVEGLLA-STGWDELVYVWQQGMDP  314 (317)
Q Consensus       284 ~~~~~~~~~~~~l~-s~~~dg~i~~w~~~~~~  314 (317)
                      ++++|+|+ +.+|+ +++.||.|++|++....
T Consensus       325 ~~~~~s~~-~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          325 SSLDWSPD-KRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEECSS-STTEEEEEETTSEEEEEEECC--
T ss_pred             eEEEEcCC-CCeEEEEecCCCcEEEEECCCcc
Confidence            99999999 66666 89999999999998643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.6e-44  Score=295.61  Aligned_cols=292  Identities=18%  Similarity=0.259  Sum_probs=239.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce--eeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT--ELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      |...|++|+|+|+ .+.++++++.      ||.|+|||+........  .....+|...|.+++|+|++ .+|++|+.|+
T Consensus        37 H~~~V~~v~~sp~-~~~~l~S~s~------D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~  108 (340)
T 4aow_A           37 HNGWVTQIATTPQ-FPDMILSASR------DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDG  108 (340)
T ss_dssp             CSSCEEEEEECTT-CTTEEEEEET------TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             ccCCEEEEEEeCC-CCCEEEEEcC------CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccc
Confidence            8899999999995 3456666665      99999999987653221  22233688999999999998 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee-EEeeccccceEEEEEecCCC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-RTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~  162 (317)
                      .|++|+....   ........+...+..+.+++++. .+++++.|+.+++||+...... .....|...+..++|+++..
T Consensus       109 ~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          109 TLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             EEEEEETTTT---EEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cceEEeeccc---ceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            9999998765   55566667888899999999987 8999999999999998766443 33456888999999998743


Q ss_pred             -CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          163 -DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       163 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                       .++++++.|+.|++||+++++....+.+|..+|.+++|+| ++++|++++.|+.|++||+++.+. +..+.. ...|.+
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~-~~~v~~  261 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKH-LYTLDG-GDIINA  261 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEE-EEEEEC-SSCEEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCce-eeeecC-CceEEe
Confidence             4678899999999999999999999999999999999999 999999999999999999998653 556654 458999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccce--------eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ++|+|++.  +++++.|+.|++||+++....        ......|...|++++|+|+ +++|++|+.||.|++||+.++
T Consensus       262 ~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          262 LCFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD-GQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT-SSEEEEEETTSCEEEEEEEC-
T ss_pred             eecCCCCc--eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeCCCc
Confidence            99999875  566778999999999876421        1223468889999999999 889999999999999999886


Q ss_pred             CC
Q 021121          314 PR  315 (317)
Q Consensus       314 ~~  315 (317)
                      .|
T Consensus       339 tr  340 (340)
T 4aow_A          339 TR  340 (340)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-44  Score=303.52  Aligned_cols=287  Identities=12%  Similarity=0.163  Sum_probs=243.8

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--c-ceeeeeecCCCCeeEEEecCC----C---CC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--A-LTELVAFDTADGVYDLAWSES----H---DS   74 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--~-~~~~~~~~~~~~v~~~~~~~~----~---~~   74 (317)
                      .|...|++++|+|   ..+++++.       ||.|++|++.....  . ........|...|.+++|+|+    +   . 
T Consensus        14 ~h~~~i~~~~~~~---~~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-   82 (397)
T 1sq9_A           14 AHDADIFSVSACN---SFTVSCSG-------DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-   82 (397)
T ss_dssp             CSSSCEEEEEECS---SEEEEEET-------TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-
T ss_pred             hhhcCeEEEEecC---CeEEEEcC-------CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-
Confidence            3788999999998   45555544       99999999987651  0 112233378899999999998    5   4 


Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCC-----ceeeccC-----CcceEEEEEe----cCCCCE-EEEEcCCCEEEEEEcCC-
Q 021121           75 LLIAAVADGSVKIYDTALPPTANP-----IRSLHEH-----TREVHSADYN----PTRRDS-FITSSWDDTVKLWTVDR-  138 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~v~iwd~~~-  138 (317)
                      +|++++.||.|++|++...   ..     ...+..|     ...|.+++|+    |++. + |++++.||.|++||+++ 
T Consensus        83 ~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITRE---DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEEETTSCEEEEEEEEC---TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESS
T ss_pred             EEEEEcCCCCEEEEEccCC---cccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCcc
Confidence            8999999999999999876   33     6667777     5999999999    9988 8 99999999999999998 


Q ss_pred             -----CceeE-----Eee-------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc---C---ccce
Q 021121          139 -----PTSVR-----TFK-------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA---H---EFEI  195 (317)
Q Consensus       139 -----~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v  195 (317)
                           ++.+.     .+.       .|...+.+++|+|+ + ++++++.||.|++||+++++.+..+..   |   ...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence                 66666     663       47889999999999 6 999999999999999999998888888   8   8999


Q ss_pred             EEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEec-------------CCCceeEEEecCCCCeeEEeeecCC
Q 021121          196 LACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNG-------------HGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      .+++|+| ++++|++++.|   +.|++||+++.+ ++..+..             |...|.+++|+|+++ +|++++.||
T Consensus       237 ~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg  313 (397)
T 1sq9_A          237 RSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDG  313 (397)
T ss_dssp             EEEEECS-STTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTS
T ss_pred             ceEEECC-CCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEeCCC
Confidence            9999999 89999999999   999999999866 4777777             999999999999998 799999999


Q ss_pred             eEEEEecccccceeeeee------cc---------------cceeEeEEEEeccC----------CeEEEeecCCcEEEE
Q 021121          260 TVCLWDFMVEDALVGRYD------HH---------------TEFAVGVDMSVLVE----------GLLASTGWDELVYVW  308 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~----------~~l~s~~~dg~i~~w  308 (317)
                      .|++||+++++ .+..+.      .|               ...|++++|+|+ +          .+|++++.||.|++|
T Consensus       314 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          314 KLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK-GWRSGMGADLNESLCCVCLDRSIRWF  391 (397)
T ss_dssp             EEEEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT-TTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             eEEEEEcCCCc-eeEEEecccCcccchhhhhccccccccccCCceeEEEeccc-cccccccccccceEEEecCCCcEEEE
Confidence            99999999886 556677      67               899999999998 4          799999999999999


Q ss_pred             ecCCC
Q 021121          309 QQGMD  313 (317)
Q Consensus       309 ~~~~~  313 (317)
                      ++..+
T Consensus       392 ~~~~g  396 (397)
T 1sq9_A          392 REAGG  396 (397)
T ss_dssp             EEEC-
T ss_pred             EcCCC
Confidence            99764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8e-45  Score=302.29  Aligned_cols=290  Identities=14%  Similarity=0.163  Sum_probs=241.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-ecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-FDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +..+|++++|+|  ++.++++++.      +|.|++||+....  ...+.. ..|...|.+++|+|++ .+|++++.||.
T Consensus         7 ~~~~i~~~~~s~--~~~~l~~~~~------d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~   75 (372)
T 1k8k_C            7 LVEPISCHAWNK--DRTQIAICPN------NHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRN   75 (372)
T ss_dssp             CSSCCCEEEECT--TSSEEEEECS------SSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             cCCCeEEEEECC--CCCEEEEEeC------CCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCe
Confidence            678999999999  5667777665      8999999998753  112222 3688999999999997 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce---eEE-eeccccceEEEEEecC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS---VRT-FKEHAYCVYNATWNPR  160 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~-~~~~~~~v~~~~~~~~  160 (317)
                      |++||+... .......+..|...|.+++|+|++. ++++++.||.|++||++.++.   ... ...|...|.+++|+|+
T Consensus        76 i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C           76 AYVWTLKGR-TWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             EEEEEEETT-EEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             EEEEECCCC-eeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence            999999764 1122333467899999999999987 999999999999999998763   233 3567889999999998


Q ss_pred             CCCeEEEEeCCCeEEEEeCC------------------CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEc
Q 021121          161 HSDVFCSASGDCTLRIWDVR------------------EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~  222 (317)
                       ++++++++.||.|++||++                  .++.+..+..|...+.+++|+| ++++|++++.|+.|++||+
T Consensus       154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          154 -SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             -SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEG
T ss_pred             -CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEEC
Confidence             8899999999999999954                  5677778888999999999999 9999999999999999999


Q ss_pred             cCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc--cc------------------------------
Q 021121          223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV--ED------------------------------  270 (317)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~--~~------------------------------  270 (317)
                      ++.+ ++..+..|..+|.+++|+|++. +|+++ .|+.|++|++.+  ++                              
T Consensus       232 ~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          232 DKKM-AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             GGTT-EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             CCCc-eeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            9876 4788889999999999999997 67776 899999999987  31                              


Q ss_pred             -ce-------eeeeecccceeEeEEEEeccC---CeEEEeecCCcEEEEecCCC
Q 021121          271 -AL-------VGRYDHHTEFAVGVDMSVLVE---GLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       271 -~~-------~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~i~~w~~~~~  313 (317)
                       ..       .....+|...|++++|.+..+   .+|++++.||.|++|++...
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence             00       122248999999999886645   89999999999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-45  Score=312.73  Aligned_cols=292  Identities=16%  Similarity=0.192  Sum_probs=226.0

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...|++|+|+|..+ .++++++.      ||.|+|||+..... ...+...+|.+.|++|+|+|.+..+|++|+.||+|
T Consensus       118 ~~~~V~~l~~~P~~~-~~lasGs~------dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          118 FDRRATSLAWHPTHP-STVAVGSK------GGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             CSSCEEEEEECSSCT-TCEEEEET------TSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             CCCCEEEEEEeCCCC-CEEEEEeC------CCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            567799999999644 44555554      99999999986652 22334447999999999999655799999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||++.. ..........+...+.+++|+|++. +|++|+.||.|++||++ ++.+..+..|...|.+++|+|++..++
T Consensus       190 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          190 RLQDFKGN-ILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             EEEETTSC-EEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EEeeccCC-ceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence            99998753 1111122223455688999999998 99999999999999986 456677889999999999999967789


Q ss_pred             EEEeCCCeEEEEeCCCCCceee---eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC-----
Q 021121          166 CSASGDCTLRIWDVREMGSTMI---IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-----  237 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----  237 (317)
                      ++++.|+.|++||+++.+....   ..+|..+|++++|+| ++++|++++.|+.|++||+++... ...+..|..     
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~  344 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDC-PLGLIPHPHRHFQH  344 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSS-EEEECCCCCCCCSS
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCcc-ceEEeccccccccc
Confidence            9999999999999998765433   356889999999999 999999999999999999998765 444444432     


Q ss_pred             -ceeEEEecCCCCeeEEeee------------cCCeEEEEecccccceeeeeecccceeEeE-EEEeccCCeEEEeecCC
Q 021121          238 -AVRKVKFSPHRRNLLASCS------------YDMTVCLWDFMVEDALVGRYDHHTEFAVGV-DMSVLVEGLLASTGWDE  303 (317)
Q Consensus       238 -~v~~~~~~~~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg  303 (317)
                       .+....|+|++. ++++++            .++.|++||..+++.+.....+|...|.++ +|+|+ +.+|++|+ |+
T Consensus       345 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd-g~~lasg~-d~  421 (435)
T 4e54_B          345 LTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM-GDTLASAM-GY  421 (435)
T ss_dssp             SCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT-SSCEEEEC-SS
T ss_pred             ceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC-CCEEEEEc-CC
Confidence             233456666665 344332            346799999999875545556788889988 69998 78888876 88


Q ss_pred             cEEEEecCCC
Q 021121          304 LVYVWQQGMD  313 (317)
Q Consensus       304 ~i~~w~~~~~  313 (317)
                      .|+||++...
T Consensus       422 ~i~iW~~~~g  431 (435)
T 4e54_B          422 HILIWSQQEA  431 (435)
T ss_dssp             EEEECCCC--
T ss_pred             cEEEEECCcC
Confidence            9999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.9e-44  Score=319.17  Aligned_cols=287  Identities=19%  Similarity=0.288  Sum_probs=236.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc--eeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL--TELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      |...|++++|+|+ +..++++++.      ||.|++|++.......  .......|...|.+++|+|++ .+|++|+.||
T Consensus       381 H~~~V~~v~~~~~-~~~~l~s~s~------D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg  452 (694)
T 3dm0_A          381 HTDMVTAIATPID-NADIIVSASR------DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDG  452 (694)
T ss_dssp             CSSCEEEEECCTT-CCSEEEEEET------TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             CCceeEEEEecCC-CCCEEEEEeC------CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCC
Confidence            8899999999996 3455555554      9999999998654322  122344799999999999998 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe---eccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF---KEHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~  160 (317)
                      .|++||+..+   .....+.+|...|.+++|+|++. +|++++.|++|++||..........   .+|...|.+++|+|+
T Consensus       453 ~v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          453 ELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EEEEEETTTT---EEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             cEEEEECCCC---cceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            9999999866   67778889999999999999998 8999999999999998654333222   357888999999998


Q ss_pred             C-CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCce
Q 021121          161 H-SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       161 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      + ...+++++.|+.|++||+++.+....+.+|...|.+++|+| ++++|++++.|+.|++||+++++. +..+. +...|
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~-~~~~~-~~~~v  605 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKK-LYSLE-ANSVI  605 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEE-EECCB-CSSCE
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCce-EEEec-CCCcE
Confidence            4 25899999999999999999999999999999999999999 999999999999999999998763 44444 45689


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc-------------------cceeEeEEEEeccCCeEEEee
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH-------------------TEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      .+++|+|++. +|+++ .++.|++||+++++ ++..+..+                   ...+++++|+|+ +.+|++|+
T Consensus       606 ~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd-g~~l~sgs  681 (694)
T 3dm0_A          606 HALCFSPNRY-WLCAA-TEHGIKIWDLESKS-IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD-GSTLFSGY  681 (694)
T ss_dssp             EEEEECSSSS-EEEEE-ETTEEEEEETTTTE-EEEEECCCCC----------------CCCCEEEEEECTT-SSEEEEEE
T ss_pred             EEEEEcCCCc-EEEEE-cCCCEEEEECCCCC-ChhhhccccccccccccccccccCCceeEEeeeEEEcCC-CCEEEEEc
Confidence            9999999986 55554 57779999998876 33333211                   123789999999 89999999


Q ss_pred             cCCcEEEEecC
Q 021121          301 WDELVYVWQQG  311 (317)
Q Consensus       301 ~dg~i~~w~~~  311 (317)
                      .||.|++|++.
T Consensus       682 ~Dg~i~iW~i~  692 (694)
T 3dm0_A          682 TDGVIRVWGIG  692 (694)
T ss_dssp             TTSEEEEEEC-
T ss_pred             CCCeEEEEecc
Confidence            99999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.4e-45  Score=307.86  Aligned_cols=283  Identities=16%  Similarity=0.183  Sum_probs=235.4

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      +++++|+|+  +.++++++.      ||.|++||+.......    .......+....|+|++ .+|++|+.||.|++||
T Consensus        59 ~~~~~~s~~--g~~l~~~~~------d~~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd  125 (420)
T 3vl1_A           59 GKGNTFEKV--GSHLYKARL------DGHDFLFNTIIRDGSK----MLKRADYTAVDTAKLQM-RRFILGTTEGDIKVLD  125 (420)
T ss_dssp             CTTCEEEEE--ETTEEEEEE------TTEEEEEECCSEETTT----TSCSCCEEEEEEECSSS-CEEEEEETTSCEEEEC
T ss_pred             ccceeeeec--CCeEEEEEc------CCcEEEEEecccceee----EEecCCceEEEEEecCC-CEEEEEECCCCEEEEe
Confidence            457999994  555555554      8999999987654211    11222445555788887 6999999999999999


Q ss_pred             eCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe
Q 021121           90 TALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (317)
                      +..+   .....+..|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..|...|.+++|+|+ +.+|++++
T Consensus       126 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~  200 (420)
T 3vl1_A          126 SNFN---LQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR-GRNVLSAS  200 (420)
T ss_dssp             TTSC---EEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT-TTEEEEEE
T ss_pred             CCCc---ceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC-CCEEEEEc
Confidence            8765   56666789999999999999988 9999999999999999999999999999999999999998 89999999


Q ss_pred             CCCeEEEEeCCCCCceeeeccC------------------------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121          170 GDCTLRIWDVREMGSTMIIPAH------------------------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNY  225 (317)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~------------------------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~  225 (317)
                      .||.|++||+++++.+..+..+                        ...+.+++|+| +++++++++.||.|++||+++.
T Consensus       201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTC
T ss_pred             CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999888777642                        24455566788 8999999999999999999988


Q ss_pred             CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-ccceeEeEEEEeccCCeEEEeecCCc
Q 021121          226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDEL  304 (317)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~  304 (317)
                      +........|...|++++|+|+++.+|++++.||.|++||+++++.++..+.. |...|..+.+ ++ +.+|++++.||.
T Consensus       280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~-~~~l~s~~~d~~  357 (420)
T 3vl1_A          280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AA-GALFVSSGFDTS  357 (420)
T ss_dssp             CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ET-TEEEEEETTTEE
T ss_pred             ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CC-CCEEEEecCCcc
Confidence            76555556688999999999999867999999999999999988765566665 6777888855 55 679999999999


Q ss_pred             EEEEecCCC
Q 021121          305 VYVWQQGMD  313 (317)
Q Consensus       305 i~~w~~~~~  313 (317)
                      |++|++...
T Consensus       358 v~iw~~~~~  366 (420)
T 3vl1_A          358 IKLDIISDP  366 (420)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEeccCC
Confidence            999999763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-45  Score=312.17  Aligned_cols=305  Identities=10%  Similarity=0.080  Sum_probs=233.3

Q ss_pred             ceecCcceeEEEEecCCCC-------eEEEEEecc-------------cccccCceEEEEecCCCCCcceeee-eecCCC
Q 021121            3 VFKTPFNGYSVKFSPFYES-------RLAVATAQN-------------FGILGNGRVHVLDLSPAAPALTELV-AFDTAD   61 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~-------~~~~~~~~~-------------~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~   61 (317)
                      .+.....|++|+|+|+..+       .+++++...             .....|+.|+||++........... ...|.+
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~  208 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG  208 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence            3556889999999996411       444443321             1123589999999977553222122 235678


Q ss_pred             CeeEEEecCCC-----CCeEEEEEcCCeEEEEEeCCCCCC--------CCceeeccCCcceEEEEEecCCCCEEEEEcCC
Q 021121           62 GVYDLAWSESH-----DSLLIAAVADGSVKIYDTALPPTA--------NPIRSLHEHTREVHSADYNPTRRDSFITSSWD  128 (317)
Q Consensus        62 ~v~~~~~~~~~-----~~~l~~~~~dg~i~v~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  128 (317)
                      .|.+++|+|++     ..+||+++.||+|++||+..+...        .+...+.+|...|++++|++++  .|++|+.|
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~D  286 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKN  286 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETT
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCC
Confidence            89999999972     259999999999999999765221        2334677899999999999863  79999999


Q ss_pred             CEEEEEEcCCCc-eeEEeeccccceEEE--EEecCCC-CeEEEEeCCCeEEEEeCCCCCceeeeccCcc--ceEEEEecC
Q 021121          129 DTVKLWTVDRPT-SVRTFKEHAYCVYNA--TWNPRHS-DVFCSASGDCTLRIWDVREMGSTMIIPAHEF--EILACDWNK  202 (317)
Q Consensus       129 g~v~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~i~~~~  202 (317)
                      |+|++||++++. ....+..|...|.++  .|+|+ + .+|++++.|++|++||+++++....+.+|..  .+.+++|+|
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~-g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF-EDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT-SCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCC-CCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            999999999764 455688999999999  46676 5 8999999999999999998877766665543  478999999


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc------------
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED------------  270 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~------------  270 (317)
                       +++.+++++.|++|++||+++... +..+.+|...|++++|+|+++ +|++|+.||+|++||+....            
T Consensus       366 -~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~  442 (524)
T 2j04_B          366 -QIYSYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAARRLLHGIKNSSATQK  442 (524)
T ss_dssp             -TTTEEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCSSTTTCC------CC
T ss_pred             -CcCeEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechHhhccccccCcccee
Confidence             888999999999999999998764 567778999999999999998 79999999999999853210            


Q ss_pred             -------------------------------ceeeeeecccceeEeEEEEecc--CCeEEEeecCCcEEEEecCCC
Q 021121          271 -------------------------------ALVGRYDHHTEFAVGVDMSVLV--EGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       271 -------------------------------~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~~w~~~~~  313 (317)
                                                     .....+.+|...|.+++|+|++  +..+++|+.||.|+||++..+
T Consensus       443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence                                           0122344678899999999984  248999999999999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.7e-44  Score=298.54  Aligned_cols=285  Identities=16%  Similarity=0.192  Sum_probs=229.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|+++ .++++++.      ||.|++||+..... ...+....|...|.+++|+|++..+|++++.|+.|
T Consensus        72 h~~~v~~~~~~~~~~-~~l~s~~~------dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHP-TTVAVGSK------GGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             CSSCEEEEEECSSCT-TEEEEEEB------TSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             CCCCEEEEEECCCCC-CEEEEEcC------CCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            678999999999522 55555554      99999999987652 22222236899999999999544799999999999


Q ss_pred             EEEEeCCCCCCCCceee---ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           86 KIYDTALPPTANPIRSL---HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ++||+..    .....+   ..|...|.+++|+|++. +|++++.||.|++||+ +++.+..+..|...|.+++|+|++.
T Consensus       144 ~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          144 TLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEETTS----CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT
T ss_pred             EEEECCC----CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC
Confidence            9999974    233333   34558899999999998 9999999999999999 5778888999999999999999944


Q ss_pred             CeEEEEeCCCeEEEEeCCC----CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC--
Q 021121          163 DVFCSASGDCTLRIWDVRE----MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG--  236 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--  236 (317)
                      .++++++.|+.|++||+++    +..+..+ .|...+.+++|+|.++++|++++.|+.|++||+++.+. ...+..|.  
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~  295 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK-PDQIIIHPHR  295 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS-CSEEEECCBC
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc-cccccccccc
Confidence            4999999999999999998    4455555 68999999999987788999999999999999998764 33443332  


Q ss_pred             ---------------CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEe
Q 021121          237 ---------------YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       237 ---------------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~  299 (317)
                                     ..+..++|+|+++ +  +++.|+.|++||+.+++ .+..+.+  |...+..++|+|+ +.+|+++
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~-g~~l~s~  370 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGG-LVHQLRDPNAAGIISLNKFSPT-GDVLASG  370 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCC-EEEEECBTTBCSCCCEEEECTT-SSEEEEE
T ss_pred             ccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCc-eeeeecCCCCCceEEEEEEecC-ccEEEEe
Confidence                           2344467777776 3  77899999999999887 4566665  4567777899999 7899999


Q ss_pred             ecCCcEEEEecCC
Q 021121          300 GWDELVYVWQQGM  312 (317)
Q Consensus       300 ~~dg~i~~w~~~~  312 (317)
                      + ||.|++|+++.
T Consensus       371 s-d~~i~iw~~~~  382 (383)
T 3ei3_B          371 M-GFNILIWNRED  382 (383)
T ss_dssp             E-TTEEEEEECC-
T ss_pred             c-CCcEEEEecCC
Confidence            7 99999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-43  Score=285.26  Aligned_cols=253  Identities=22%  Similarity=0.363  Sum_probs=214.2

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iw  134 (317)
                      .+|...|++++|+|++ .+|++|+.|++|++|++... ..+.+..+.+|.++|.+++|+++  +. +|++|+.|++|++|
T Consensus         6 ~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIW   82 (297)
T ss_dssp             CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEEEEE
T ss_pred             cCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEEEEE
Confidence            3688999999999998 69999999999999998743 33567788999999999999864  55 99999999999999


Q ss_pred             EcCCCc--eeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCC-----
Q 021121          135 TVDRPT--SVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYD-----  204 (317)
Q Consensus       135 d~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~-----  204 (317)
                      |+++++  .+..+..|...|.+++|+|+. +.+|++++.|+.|++||+++...  ...+..|...+.+++|+|..     
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  566777899999999999963 67999999999999999987632  45667899999999999931     


Q ss_pred             -------CcEEEEEecCCcEEEEEccCCCc---cEEEEecCCCceeEEEecCCC--CeeEEeeecCCeEEEEecccccc-
Q 021121          205 -------DCLIASASVDKSIKIWDVRNYRV---PIAVLNGHGYAVRKVKFSPHR--RNLLASCSYDMTVCLWDFMVEDA-  271 (317)
Q Consensus       205 -------~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~-  271 (317)
                             +++|++|+.|+.|++||+++.+.   ....+.+|...|.+++|+|++  ..+|++++.|++|++||+++... 
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   57999999999999999987653   345678999999999999985  34899999999999999987431 


Q ss_pred             -eeeee--ecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          272 -LVGRY--DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       272 -~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       ....+  ..|...|.+++|+|+ +.+|++++.||.|++|+...+
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~-g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSS-SCCEEEEETTSCEEEEEECTT
T ss_pred             cceeeeecccCCCcEEEEEECCC-CCEEEEEcCCCcEEEEEECCC
Confidence             11222  467889999999999 889999999999999998743

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-43  Score=299.59  Aligned_cols=287  Identities=20%  Similarity=0.286  Sum_probs=240.0

Q ss_pred             ecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEec----CCCCC-----cceeeee-e-------cCCCCeeEE
Q 021121            5 KTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDL----SPAAP-----ALTELVA-F-------DTADGVYDL   66 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~----~~~~~-----~~~~~~~-~-------~~~~~v~~~   66 (317)
                      .+...|.+++|+|+  +. ++++++.      ||.|++|++    .....     ....+.. +       .|...|+++
T Consensus        43 ~~~~~v~~~~~s~~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (425)
T 1r5m_A           43 VKLDNIVSSTWNPL--DESILAYGEK------NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL  114 (425)
T ss_dssp             EECSCCSEEEECSS--CTTEEEEEET------BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE
T ss_pred             eccCceEEEEECCC--CCcEEEEecC------CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE
Confidence            45689999999994  54 5555554      899999999    65541     1111110 0       146699999


Q ss_pred             EecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE---
Q 021121           67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR---  143 (317)
Q Consensus        67 ~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---  143 (317)
                      +|+|++ .+|++|+.||.|++|+ ..   ......+..|...|.+++|+|++. +|++++.||.|++||+.+++.+.   
T Consensus       115 ~~s~~~-~~l~~~~~dg~i~i~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          115 AWSHDG-NSIVTGVENGELRLWN-KT---GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEE-TT---SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             EEcCCC-CEEEEEeCCCeEEEEe-CC---CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEee
Confidence            999998 6999999999999999 32   367777889999999999999988 99999999999999997765433   


Q ss_pred             -----------------------------------------------------EeeccccceEEEEEecCCCCeEEEEeC
Q 021121          144 -----------------------------------------------------TFKEHAYCVYNATWNPRHSDVFCSASG  170 (317)
Q Consensus       144 -----------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~  170 (317)
                                                                           .+..|...|.+++|+|+ +.++++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  267 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLLLSASD  267 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-TTEEEEEET
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-CCEEEEEcC
Confidence                                                                 23356778999999998 889999999


Q ss_pred             CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCe
Q 021121          171 DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       171 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (317)
                      ||.|++||+++++....+..|...+.+++|+| ++ ++++++.|+.|++||+++.+ .+..+..|...|.+++|+|+++ 
T Consensus       268 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~-  343 (425)
T 1r5m_A          268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQ-  343 (425)
T ss_dssp             TSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSS-
T ss_pred             CCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCC-
Confidence            99999999999999999988999999999999 77 99999999999999999866 4777888999999999999998 


Q ss_pred             eEEeeecCCeEEEEeccccc-------------------ceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          251 LLASCSYDMTVCLWDFMVED-------------------ALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       251 ~l~~~~~d~~i~vwd~~~~~-------------------~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +|++++.||.|++||+.+.+                   ..+..+..|..  .|.+++|+|+ +.+|++++.||.|++|+
T Consensus       344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA-GNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT-SSEEEEEESSSCCEEEE
T ss_pred             EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC-CceEEEEecCceEEEEe
Confidence            79999999999999998765                   15677888866  9999999999 78999999999999999


Q ss_pred             cC
Q 021121          310 QG  311 (317)
Q Consensus       310 ~~  311 (317)
                      +.
T Consensus       423 ~~  424 (425)
T 1r5m_A          423 IP  424 (425)
T ss_dssp             CC
T ss_pred             ec
Confidence            86

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-43  Score=289.34  Aligned_cols=283  Identities=15%  Similarity=0.192  Sum_probs=243.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||+..... .  .....|...|.+++|+|++ .+|++++.||.|
T Consensus        31 h~~~v~~~~~s~--~~~~l~~~~~------dg~i~vwd~~~~~~-~--~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i   98 (369)
T 3zwl_B           31 HERPLTQVKYNK--EGDLLFSCSK------DSSASVWYSLNGER-L--GTLDGHTGTIWSIDVDCFT-KYCVTGSADYSI   98 (369)
T ss_dssp             CSSCEEEEEECT--TSCEEEEEES------SSCEEEEETTTCCE-E--EEECCCSSCEEEEEECTTS-SEEEEEETTTEE
T ss_pred             eeceEEEEEEcC--CCCEEEEEeC------CCEEEEEeCCCchh-h--hhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeE
Confidence            788999999999  5666666665      99999999987652 1  2223688999999999997 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCc-----------eeEEeeccc
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPT-----------SVRTFKEHA  149 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~-----------~~~~~~~~~  149 (317)
                      ++||+..+   +....+. +...+.+++|+|++. ++++++.+     |.|++||+....           ....+..+.
T Consensus        99 ~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B           99 KLWDVSNG---QCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             EEEETTTC---CEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             EEEECCCC---cEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            99999876   5555555 889999999999998 89999888     999999998763           334444555


Q ss_pred             c--ceEEEEEecCCCCeEEEEeCCCeEEEEeCCC-CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC
Q 021121          150 Y--CVYNATWNPRHSDVFCSASGDCTLRIWDVRE-MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       150 ~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      .  .+.+++|+|+ ++++++++.||.|++||+++ .+....+..|...+.+++|+| ++++|++++.|+.|++||+++.+
T Consensus       174 ~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          174 GLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             TCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCC
T ss_pred             CccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCc
Confidence            5  8999999998 88999999999999999998 677888888999999999999 99999999999999999999876


Q ss_pred             ccEEEEecCCCceeEEEecCCCCeeEEeeecCC--------------eEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM--------------TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      . +..+. +...+.+++|+|+++ ++++++.++              .+++||..+++ ....+.+|...|.+++|+|+ 
T Consensus       252 ~-~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~-  326 (369)
T 3zwl_B          252 V-LKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE-EIGRVQGHFGPLNTVAISPQ-  326 (369)
T ss_dssp             E-EEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTTCC-EEEEEECCSSCEEEEEECTT-
T ss_pred             e-eeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCc-chhheecccCcEEEEEECCC-
Confidence            4 55555 778999999999999 688888887              89999999886 66788899999999999998 


Q ss_pred             CCeEEEeecCCcEEEEecCC
Q 021121          293 EGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +.+|++++.||.|++|++..
T Consensus       327 ~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          327 GTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             SSEEEEEETTSEEEEEEECH
T ss_pred             CCEEEEEcCCCeEEEEECcc
Confidence            88999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-43  Score=294.61  Aligned_cols=282  Identities=19%  Similarity=0.321  Sum_probs=237.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      .+.+++|++   +.+++++.       +|.|++|++....  ........|...|.+++|+|++ .+|++|+.||.|++|
T Consensus        95 ~~~~~~~s~---~~l~~~~~-------d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           95 YLNLLDWSN---LNVVAVAL-------ERNVYVWNADSGS--VSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIY  161 (401)
T ss_dssp             TCBCEEECT---TSEEEEEE-------TTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             eEEEEeecC---CCEEEEEC-------CCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEE
Confidence            345577777   34555554       8999999998765  3333334578899999999998 699999999999999


Q ss_pred             EeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-CCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121           89 DTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRTFKEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                      |+..+   +.+..+..|...|.+++|++  . ++++++.||.|++||++ .......+..|...|.+++|+|+ +.++++
T Consensus       162 d~~~~---~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s  234 (401)
T 4aez_A          162 DVESQ---TKLRTMAGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GLQLAS  234 (401)
T ss_dssp             ETTTC---CEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEEEE
T ss_pred             ECcCC---eEEEEecCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC-CCEEEE
Confidence            99866   67778889999999999953  4 89999999999999998 46677888899999999999998 899999


Q ss_pred             EeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe--cCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS--VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++.||.|++||+++++....+..|...|.+++|+|....++++++  .|+.|++||+++.+. +..+. +...|.+++|+
T Consensus       235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~~-~~~~v~~~~~s  312 (401)
T 4aez_A          235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVD-AGSQVTSLIWS  312 (401)
T ss_dssp             EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEEE-CSSCEEEEEEC
T ss_pred             EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEEe-CCCcEEEEEEC
Confidence            999999999999999999899899999999999995567777765  799999999998763 55554 66789999999


Q ss_pred             CCCCeeEEe--eecCCeEEEEecccccc-eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          246 PHRRNLLAS--CSYDMTVCLWDFMVEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       246 ~~~~~~l~~--~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |+++ ++++  |+.||.|++||+.+++. ....+.+|...|.+++|+|+ +.+|++++.||.|++|++....
T Consensus       313 ~~~~-~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          313 PHSK-EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD-GRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             SSSS-EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT-SSEEEEECTTSEEEEEECCC--
T ss_pred             CCCC-eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCc
Confidence            9999 5666  44899999999988652 23346789999999999998 8899999999999999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-45  Score=306.17  Aligned_cols=288  Identities=14%  Similarity=0.158  Sum_probs=226.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee-eeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL-VAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +..+|++++|+|  ++.++++++.      ||.|++||+....  .... ....|...|.+++|+|++ .+|++++.|+.
T Consensus        10 ~~~~v~~~~~s~--~g~~l~~~~~------d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~   78 (377)
T 3dwl_C           10 LPKPSYEHAFNS--QRTEFVTTTA------TNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRN   78 (377)
T ss_dssp             CSSCCSCCEECS--SSSEEECCCS------SSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSS
T ss_pred             CCCcEEEEEECC--CCCEEEEecC------CCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCe
Confidence            457899999999  5677777765      9999999998653  1112 222688999999999998 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc---eeEEeec-cccceEEEEEecC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT---SVRTFKE-HAYCVYNATWNPR  160 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~  160 (317)
                      |++||+..+........+..|...|.+++|+|++. +|++++.|+.|++||+++++   ....+.. |...|.+++|+|+
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            99999987633446677788999999999999988 89999999999999999886   4677777 9999999999998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCC------------------CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEc
Q 021121          161 HSDVFCSASGDCTLRIWDVRE------------------MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~  222 (317)
                       ++++++++.|+.|++||++.                  ++.+..+ .|...|.+++|+| ++++|++++.|+.|++||+
T Consensus       158 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          158 -NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             -SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEE
T ss_pred             -CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEEC
Confidence             89999999999999999853                  3344455 7889999999999 9999999999999999999


Q ss_pred             cCCCcc---EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc-cee-------------------------
Q 021121          223 RNYRVP---IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALV-------------------------  273 (317)
Q Consensus       223 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~-------------------------  273 (317)
                      ++.+.+   +..+..|...|.+++|+|+++ +|++++.++.+ +|+..... ...                         
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (377)
T 3dwl_C          235 SAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE  312 (377)
T ss_dssp             CSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred             CCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence            987652   566788999999999999998 78888766655 66654211 000                         


Q ss_pred             ---------e----------------eeecccceeEeEEEEeccCC---eEEEeecCCcEEEEec
Q 021121          274 ---------G----------------RYDHHTEFAVGVDMSVLVEG---LLASTGWDELVYVWQQ  310 (317)
Q Consensus       274 ---------~----------------~~~~~~~~v~~~~~~~~~~~---~l~s~~~dg~i~~w~~  310 (317)
                               .                ....|...|+++++.+..+.   .|+|+|.||.|++||+
T Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                     0                11128899999998776344   6999999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.7e-44  Score=297.22  Aligned_cols=251  Identities=19%  Similarity=0.286  Sum_probs=210.5

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      ..+...|.+++|+|  ++.+++++.       ||.|+|||+...+... ......+|...|++++|+|++ .+|++|+.|
T Consensus        91 ~~~~~~V~~~~~s~--d~~~l~~s~-------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~d  160 (357)
T 4g56_B           91 VQTEAGVTDVAWVS--EKGILVASD-------SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKD  160 (357)
T ss_dssp             EECSSCEEEEEEET--TTEEEEEET-------TSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETT
T ss_pred             CCCCCCEEEEEEcC--CCCEEEEEC-------CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCC
Confidence            34677899999999  678887765       8999999998765322 233444789999999999998 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEEEecC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPR  160 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~  160 (317)
                      +.|++||+.++   +.+..+..|...|.+++|+|++..++++++.||.|++||+++++....+.  .+...+.+++|+|+
T Consensus       161 g~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          161 FSVKVWDLSQK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             SCEEEEETTTT---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             CeEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            99999999876   77888899999999999999987689999999999999999987766543  46678999999999


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR  240 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~  240 (317)
                      ++.+|++|+.|+.|++||+++++.+..+..|...|++++|+|..+++|++++.|++|++||+++++  +....+|...|+
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--~~~~~~H~~~V~  315 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--VFRDLSHRDFVT  315 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--EEEECCCSSCEE
T ss_pred             ccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--EeEECCCCCCEE
Confidence            788999999999999999999999999999999999999999445789999999999999998865  334458999999


Q ss_pred             EEEecC-CCCeeEEeeecCCeEEEEeccccc
Q 021121          241 KVKFSP-HRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       241 ~~~~~~-~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      +++|+| ++. +|++++.||+|++|++.+..
T Consensus       316 ~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          316 GVAWSPLDHS-KFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEEECSSSTT-EEEEEETTSCEEEEECC---
T ss_pred             EEEEeCCCCC-EEEEEcCCCeEEEEECCCCC
Confidence            999999 566 79999999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-43  Score=301.10  Aligned_cols=306  Identities=21%  Similarity=0.377  Sum_probs=251.1

Q ss_pred             eecCcceeEEEEecCCC---------CeEEEEEecccccccCceEEEEecC------------------------CCCCc
Q 021121            4 FKTPFNGYSVKFSPFYE---------SRLAVATAQNFGILGNGRVHVLDLS------------------------PAAPA   50 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~---------~~~~~~~~~~~~~~~~g~i~i~~~~------------------------~~~~~   50 (317)
                      +....+..++.|.|+..         .++++++... .  ....|.++++.                        ...+.
T Consensus        42 ~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~-~--~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~  118 (430)
T 2xyi_A           42 HALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS-D--EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGK  118 (430)
T ss_dssp             EECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCS-S--SCEEEEEEEEEEC--------------------------C
T ss_pred             cCCCCCceEEEECcccccccCCCcceEEEEEEEcCC-C--CCCEEEEEEEECCCCccccccccccccccccccccCCCCc
Confidence            44567889999999642         3455554421 1  24578888653                        11123


Q ss_pred             ceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-------CCCCCceeeccCCcceEEEEEecCCCCEEE
Q 021121           51 LTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP-------PTANPIRSLHEHTREVHSADYNPTRRDSFI  123 (317)
Q Consensus        51 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  123 (317)
                      +.......|.+.|++++|+|++..+|++++.+|.|++|++...       ........+.+|...|.+++|+|++..+|+
T Consensus       119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            4445566899999999999985579999999999999999752       124667778899999999999999877999


Q ss_pred             EEcCCCEEEEEEcCCCce-------eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC---CceeeeccCcc
Q 021121          124 TSSWDDTVKLWTVDRPTS-------VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEF  193 (317)
Q Consensus       124 ~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~  193 (317)
                      +|+.||.|++||+.++..       ...+..|...|.+++|+|+++.+|++++.||.|++||++++   +....+..|..
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            999999999999987432       45667899999999999976899999999999999999987   56677778999


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc---
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED---  270 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---  270 (317)
                      .+++++|+|....++++|+.||.|++||+++...++..+..|...|++++|+|+++.+|++++.|+.|++||+....   
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence            99999999944458999999999999999987767888999999999999999998789999999999999998732   


Q ss_pred             ----------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          271 ----------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       271 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                                .++..+.+|...|++++|+|++..+|++++.||.|++|++..
T Consensus       359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                      356677789999999999999434999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.8e-43  Score=307.04  Aligned_cols=279  Identities=26%  Similarity=0.415  Sum_probs=244.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...|.+++|+|  ++..+++++.      ++.|++|+.+...  ..  ....|...|.+++|+|++ ..+++++.|+.|
T Consensus       261 ~~~~v~~v~~~~--d~~~l~~~~~------d~~i~~w~~~~~~--~~--~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i  327 (577)
T 2ymu_A          261 HSSSVNGVAFRP--DGQTIASASD------DKTVKLWNRNGQL--LQ--TLTGHSSSVWGVAFSPDG-QTIASASDDKTV  327 (577)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TSCEEEEETTSCE--EE--EECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             CCCCEEEEEEcC--CCCEEEEEeC------CCEEEEEeCCCcE--EE--EEecCCCCeEEEEECCCC-CEEEEEeCCCeE
Confidence            677899999999  5666666665      8999999975431  22  223688899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||...    ..+..+..|...+.+++|+|++. ++++++.||.|++||. +++.+..+..|...|.+++|+|+ +++|
T Consensus       328 ~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d-g~~l  400 (577)
T 2ymu_A          328 KLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD-GQTI  400 (577)
T ss_dssp             EEEETTS----CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTT-SSCE
T ss_pred             EEEeCCC----CeeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCC-CCEE
Confidence            9999754    45567788999999999999998 9999999999999995 57788888999999999999999 8899


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      ++++.|+.|++||. +++.+..+..|...|.+++|+| ++++|++++.|+.|++||... + .+..+.+|...|++++|+
T Consensus       401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~s  476 (577)
T 2ymu_A          401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFS  476 (577)
T ss_dssp             EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEEC
T ss_pred             EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEc
Confidence            99999999999995 5677888889999999999999 999999999999999999753 3 477888999999999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |+++ +|++++.|+.|++||.. ++ ++..+.+|...|++++|+|+ +++|++++.||.|++||...
T Consensus       477 pd~~-~las~~~d~~i~iw~~~-~~-~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          477 PDGQ-TIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             TTSC-EEEEEETTSEEEEEETT-SC-EEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTTS
T ss_pred             CCCC-EEEEEeCCCEEEEEcCC-CC-EEEEEeCCCCCEEEEEEcCC-CCEEEEEECcCEEEEEeCCC
Confidence            9998 79999999999999953 43 67788999999999999999 88999999999999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-42  Score=292.79  Aligned_cols=287  Identities=20%  Similarity=0.336  Sum_probs=239.0

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      .+...+....|+||+  .+.++++.        |+.|+|||..++. ....+....|...|++++|+|++ .+|++|+.|
T Consensus       101 ~~~~d~y~~~l~wS~--~n~lAvgl--------d~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~D  168 (420)
T 4gga_A          101 EIRNDYYLNLVDWSS--GNVLAVAL--------DNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSS  168 (420)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEE--------TTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTS-SEEEEEETT
T ss_pred             CCcccccceeEEECC--CCEEEEEe--------CCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCC-CEEEEEECC
Confidence            344455677899998  56555543        7899999998765 22333334677889999999998 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      |.|++||+..+   +.+..+.+|...+.++.+++  . ++++|+.|+.+++||.... ..+..+.+|...+..+.|+|+ 
T Consensus       169 g~v~iWd~~~~---~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~-  241 (420)
T 4gga_A          169 AEVQLWDVQQQ---KRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-  241 (420)
T ss_dssp             SCEEEEETTTT---EEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-
T ss_pred             CeEEEEEcCCC---cEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC-
Confidence            99999999876   77888899999999998874  4 8999999999999998864 456778899999999999999 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCc----eeeeccCccceEEEEecCCCCcEEEEE--ecCCcEEEEEccCCCccEEEEecC
Q 021121          162 SDVFCSASGDCTLRIWDVREMGS----TMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +.++++++.|+.+++||..+++.    +.....|...|.+++|+|.+..+++++  +.|+.|++||+++++. ...+..|
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~~~  320 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVDAH  320 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEECS
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-ceeeccc
Confidence            89999999999999999987653    455667889999999999777777764  4799999999998764 5555544


Q ss_pred             CCceeEEEecCCCCeeEEe-eecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          236 GYAVRKVKFSPHRRNLLAS-CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                       ..+.++.|+|+++.++++ |+.|+.|+|||+.+++ ++..+.+|.+.|++++|+|+ +.+|+||+.|++|++||+..
T Consensus       321 -~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~-~v~~l~gH~~~V~~l~~spd-g~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          321 -SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSLTMSPD-GATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             -SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEECCCSSCEEEEEECTT-SSCEEEEETTTEEEEECCSC
T ss_pred             -cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Confidence             578899999999964433 2378999999999886 66889999999999999999 88999999999999999965

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-42  Score=281.68  Aligned_cols=281  Identities=20%  Similarity=0.240  Sum_probs=240.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++| |  ++.++++++.      ||.|++||+....   .......|...|.+++|+|++ .+|++++.||.|
T Consensus        17 h~~~v~~~~~-~--~~~~l~s~~~------dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i   83 (313)
T 3odt_A           17 HDQDVRDVVA-V--DDSKVASVSR------DGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMI   83 (313)
T ss_dssp             CSSCEEEEEE-E--ETTEEEEEET------TSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTT-TEEEEEETTSCE
T ss_pred             CCCCcEEEEe-c--CCCEEEEEEc------CCcEEEEECCCCE---EEEEeecCCccEEEEEECCCC-CEEEEecCCCeE
Confidence            7889999999 7  3444555554      9999999996643   222333678899999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++|++......+....+..|...|.+++|.  +. ++++++.||.|++||  .++....+..|...+.++.|.|.+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            999998776667778888999999999994  44 899999999999999  6778888889999999999999448999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      ++++.||.|++||.  .+....+.. +...+.+++|+| ++. +++++.|+.|++||+++.+ ++..+..|...|++++|
T Consensus       159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~  233 (313)
T 3odt_A          159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGD-VLRTYEGHESFVYCIKL  233 (313)
T ss_dssp             EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEE
T ss_pred             EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchh-hhhhhhcCCceEEEEEE
Confidence            99999999999993  455566665 888999999999 777 8999999999999999866 47888899999999999


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +|++.  |++++.||.|++||+++++ ....+..|...|.+++|+|+ +. +++++.||.|++|++....
T Consensus       234 ~~~~~--l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          234 LPNGD--IVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCMSN-GD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             CTTSC--EEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEECTT-SC-EEEEETTSCEEEEESCGGG
T ss_pred             ecCCC--EEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEccC-CC-EEEEeCCCcEEEEeCCCCc
Confidence            99983  8889999999999999886 66788889999999999998 55 6779999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.4e-44  Score=295.78  Aligned_cols=298  Identities=11%  Similarity=0.090  Sum_probs=227.7

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccc-cCceEEEEecCCCCCcc-------eeeeeecCCCCeeEEEecCCCCCe
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGIL-GNGRVHVLDLSPAAPAL-------TELVAFDTADGVYDLAWSESHDSL   75 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~-~~g~i~i~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~   75 (317)
                      ++..+||++++|+|  +++++++++...... -+++|++|++.......       .......+...|.++++.+   ..
T Consensus        11 ~~~g~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~   85 (365)
T 4h5i_A           11 YNVGYPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GI   85 (365)
T ss_dssp             EECSSCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TE
T ss_pred             cCCCCCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CE
Confidence            44578999999999  788888876421100 13469999998665321       1122235677788887764   35


Q ss_pred             EEEE-----------EcCCeEEEEEeCCCCCCC-Cce-----eeccCCcceEEEEEecCCCCEEE--EEcCCCEEEEEEc
Q 021121           76 LIAA-----------VADGSVKIYDTALPPTAN-PIR-----SLHEHTREVHSADYNPTRRDSFI--TSSWDDTVKLWTV  136 (317)
Q Consensus        76 l~~~-----------~~dg~i~v~~~~~~~~~~-~~~-----~~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~v~iwd~  136 (317)
                      +++|           +.|+.+++|++....... ...     ....+...+.+++|+|||+ +++  +++.|++|++||+
T Consensus        86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~  164 (365)
T 4h5i_A           86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDP  164 (365)
T ss_dssp             EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEET
T ss_pred             EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeEC
Confidence            5555           346789999987642211 111     1123455689999999998 554  4557899999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEEecC
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      ++++.+..+. |...|.+++|+|+ ++++++++.+ .+.+|+..+++.+.  ....|...+.+++|+| +++++++++.|
T Consensus       165 ~~~~~~~~~~-~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d  240 (365)
T 4h5i_A          165 SDLTEKFEIE-TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLK  240 (365)
T ss_dssp             TTTEEEEEEE-CSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEES
T ss_pred             CCCcEEEEeC-CCCceEEEEEccC-CceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecC
Confidence            9999988886 7788999999999 8899888855 56677777666543  3346788899999999 99999999988


Q ss_pred             C----cEEEEEccCCCcc---EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          215 K----SIKIWDVRNYRVP---IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       215 ~----~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      +    .++.||+......   ...+.+|...|++++|+|+++ +|++|+.|++|+|||+++++.+...+.+|...|++++
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence            7    6888998765432   345678999999999999999 7999999999999999998755444689999999999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |+|+ +++|+||+.|++|+||++..+
T Consensus       320 fSpd-g~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          320 ISPD-STYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ECTT-SCEEEEEETTSEEEEEECCTT
T ss_pred             ECCC-CCEEEEEeCCCeEEEEEcCCC
Confidence            9999 899999999999999999653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.7e-43  Score=287.30  Aligned_cols=245  Identities=22%  Similarity=0.329  Sum_probs=218.8

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.+.|.+++|+|++ .+|++|+.||.|++||+..+   .....+..|...|.+++|+|++. ++++++.|+.|++|++
T Consensus        52 ~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           52 RGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYNL  126 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSS-EEEEEETTCEEEEEET
T ss_pred             cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCC-EEEEEeCCCeEEEEEC
Confidence            3789999999999998 69999999999999998766   66777888999999999999998 9999999999999999


Q ss_pred             CCCc----eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          137 DRPT----SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       137 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      .+.+    ....+.+|...|.++.|+++ + .+++++.|+.|++||+++++.+..+.+|...|.+++|+| +++++++|+
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~  203 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGA  203 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEe
Confidence            8753    45667789999999999986 4 488999999999999999999999999999999999999 999999999


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee--cccceeEeEEEEe
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD--HHTEFAVGVDMSV  290 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~  290 (317)
                      .|+.|++||+++.. +...+.+|...|++++|+|++. +|++++.||.|++||+++.+.. ..+.  .+...|.+++|+|
T Consensus       204 ~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          204 CDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECT
T ss_pred             CCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECC
Confidence            99999999999866 4788899999999999999998 7999999999999999987633 3333  2335799999999


Q ss_pred             ccCCeEEEeecCCcEEEEecCCC
Q 021121          291 LVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       291 ~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      + +.+|++|+.||.|++||+...
T Consensus       281 ~-g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          281 S-GRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             T-SSEEEEEETTSEEEEEETTTC
T ss_pred             C-CCEEEEECCCCeEEEEEcccC
Confidence            9 899999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.4e-43  Score=287.25  Aligned_cols=287  Identities=16%  Similarity=0.276  Sum_probs=243.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +..+|.+++|+|  ++++++.+..      ++.+..|.....   ...+....|...|++++|+|++ .++++++ ||.|
T Consensus         8 ~~~~v~~~~~s~--dg~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i   74 (337)
T 1gxr_A            8 GSKPAYSFHVTA--DGQMQPVPFP------PDALIGPGIPRH---ARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCV   74 (337)
T ss_dssp             EEEECCEEEECS--SSCEEECCCC------TTSSSSTTCCSE---EEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEE
T ss_pred             cCCceeEEEECC--CCCEEEeecC------CCcEeccccCCc---cccceeccCCCceEEEEEecCC-cEEEEcC-CCeE
Confidence            456789999999  6777766554      455555543322   3344555899999999999998 5888888 9999


Q ss_pred             EEEEeCCCCCCCCceeec--cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc--eeEEeeccccceEEEEEecCC
Q 021121           86 KIYDTALPPTANPIRSLH--EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT--SVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ++|++..+........+.  .|...|.+++|+|+++ ++++++.||.|++||+++++  ....+..|...+.+++|+|+ 
T Consensus        75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-  152 (337)
T 1gxr_A           75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD-  152 (337)
T ss_dssp             EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT-
T ss_pred             EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC-
Confidence            999998765444555544  7899999999999988 99999999999999999887  56677788999999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ++++++++.||.|++||+++++....+..|...+.+++|+| +++++++++.|+.|++||+++.+. +..+ .+...+.+
T Consensus       153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~v~~  229 (337)
T 1gxr_A          153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFS  229 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCce-Eeee-cCCCceEE
Confidence            89999999999999999999998999999999999999999 999999999999999999998653 4444 47788999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ++|+|+++ +|++++.++.|++||+++.+  ...+..|...|.+++|+|+ +.+|++++.||.|++|++....
T Consensus       230 ~~~s~~~~-~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          230 LGYCPTGE-WLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC
T ss_pred             EEECCCCC-EEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCC-CCEEEEecCCCcEEEEECCCCe
Confidence            99999998 79999999999999998876  3467789999999999998 7899999999999999998653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-42  Score=281.93  Aligned_cols=250  Identities=26%  Similarity=0.422  Sum_probs=221.2

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      ..+|...|++++|+|++ .+|++|+.||.|++|++..+   +....+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus        19 ~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWD   93 (312)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred             EcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCC-EEEEECCCCEEEEEE
Confidence            34789999999999998 69999999999999998765   66777889999999999999998 999999999999999


Q ss_pred             cCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      +++++.+..+..|...|.+++|+|+ ++++++++.|+.|++||+++++.+..+..|..++.+++|+| +++++++++.|+
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  171 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG  171 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC
Confidence            9999999999999999999999998 89999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE--eEEEEeccC
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV--GVDMSVLVE  293 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~~  293 (317)
                      .|++||+++.+........+...+..++|+|+++ +|++++.|+.|++||+++++ ....+.+|.....  ...+++.++
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE-EEEEECSSCCSSSCCCEEEECSSS
T ss_pred             cEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCc-EEEEEEecCCceEEEEEEEEeCCC
Confidence            9999999987653333455677899999999998 69999999999999999876 5567777765443  335565547


Q ss_pred             CeEEEeecCCcEEEEecCCCC
Q 021121          294 GLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .+|++|+.||.|++||+....
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCC
T ss_pred             cEEEEECCCCEEEEEECCCch
Confidence            899999999999999997653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-43  Score=298.45  Aligned_cols=289  Identities=11%  Similarity=0.169  Sum_probs=229.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC---CCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP---AAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      |...|++++|+|. ++.++++++.      ||.|++||+..   .. .......+.|...|.+++|+|++ .+|++|+.|
T Consensus        62 h~~~V~~~~~s~~-~~~~l~s~s~------dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d  132 (437)
T 3gre_A           62 EPNSITSSAVSPG-ETPYLITGSD------QGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKD  132 (437)
T ss_dssp             TTSCEEEEEEECS-SSCEEEEEET------TSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTTS-SEEEEEETT
T ss_pred             CCCceEEEEECCC-CCCEEEEecC------CceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCCC-CEEEEEeCC
Confidence            5689999999993 2445555554      99999999976   32 12233444689999999999987 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeec----------c--CCcceEEEE--EecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-
Q 021121           83 GSVKIYDTALPPTANPIRSLH----------E--HTREVHSAD--YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-  147 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-  147 (317)
                      |.|++||+......+......          .  +...+.++.  +++++. ++++++.||.|++||+++++.+..+.. 
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~  211 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIENS  211 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence            999999995211112222221          1  455666766  456776 999999999999999999999999987 


Q ss_pred             -cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCC---CCcEEEEEecCCcEEEEEc
Q 021121          148 -HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKY---DDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       148 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~---~~~~l~~~~~d~~i~v~d~  222 (317)
                       |...|++++|+|+ +.++++++.||.|++||+++++.+..+. .|..+|.+++|+|.   ++.+|++++.|+.|++||+
T Consensus       212 ~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          212 PRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             GGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence             8899999999999 8999999999999999999988888775 67889999966651   6789999999999999999


Q ss_pred             cCCCccEEEEec--------------------------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee
Q 021121          223 RNYRVPIAVLNG--------------------------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       223 ~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  276 (317)
                      ++++. +..+.+                          |...|++++|+ +++ +|++++.|+.|++||+.+++.. ..+
T Consensus       291 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~-~~~  366 (437)
T 3gre_A          291 VKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSSS-KAV  366 (437)
T ss_dssp             TTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGGC-EEE
T ss_pred             CCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCcccc-eEE
Confidence            87663 444442                          55668889999 555 7999999999999999987633 333


Q ss_pred             ec-------------------------------------ccceeEeEEEEec-cCCeEEEeecCCcEEEEe
Q 021121          277 DH-------------------------------------HTEFAVGVDMSVL-VEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       277 ~~-------------------------------------~~~~v~~~~~~~~-~~~~l~s~~~dg~i~~w~  309 (317)
                      .+                                     |...|++++|+++ ++.+|++|+.||.|++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            32                                     8899999999997 345999999999999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-43  Score=288.08  Aligned_cols=250  Identities=25%  Similarity=0.428  Sum_probs=212.5

Q ss_pred             cCCC-CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           58 DTAD-GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .|.. .|.+++|+|++ .+|++|+.|+.|++||+..+..........+|...|.+++|+|+++ +|++|+.|+.+++||+
T Consensus        13 ~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D~~v~iw~~   90 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCIWKK   90 (345)
T ss_dssp             CSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEE
T ss_pred             CCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECCCcEEEEEc
Confidence            5666 89999999998 6999999999999999976411111223368999999999999998 9999999999999999


Q ss_pred             CCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---eeeeccCccceEEEEecCCCCcEEEEE
Q 021121          137 DRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---TMIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       137 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      .++  +.+..+.+|...|.+++|+|+ +++|++++.|+.|++||++++..   +..+..|...|.+++|+| ++++|+++
T Consensus        91 ~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~  168 (345)
T 3fm0_A           91 NQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASA  168 (345)
T ss_dssp             CCC-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEE
T ss_pred             cCCCeEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEE
Confidence            876  456788899999999999998 89999999999999999987643   456678999999999999 99999999


Q ss_pred             ecCCcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc--------------ceeeee
Q 021121          212 SVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--------------ALVGRY  276 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~--------------~~~~~~  276 (317)
                      +.|+.|++||.+..+ .+...+.+|...|++++|+|+++ +|++++.|++|++||.....              .++..+
T Consensus       169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T 3fm0_A          169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL  247 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred             eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence            999999999998764 23567889999999999999998 79999999999999974322              112233


Q ss_pred             ec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          277 DH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       277 ~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+ |...|.+++|+|+ +..|++++.|+.|++|+....
T Consensus       248 ~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          248 SGFHSRTIYDIAWCQL-TGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             CSSCSSCEEEEEECTT-TCCEEEEETTSCEEEEEECTT
T ss_pred             cCCCCCcEEEEEEecC-CCEEEEEeCCCeEEEEEeCCC
Confidence            33 8889999999998 789999999999999998653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.3e-41  Score=274.59  Aligned_cols=284  Identities=19%  Similarity=0.296  Sum_probs=232.8

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      .....+|+|||  ++.++ ++.       |++|+|||+.+++ ....+....|...|++++|+|++ .+|++|+.||.|+
T Consensus        25 d~y~~~l~WS~--~~~lA-vg~-------D~tV~iWd~~tg~-~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~   92 (318)
T 4ggc_A           25 DYYLNLVDWSS--GNVLA-VAL-------DNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQ   92 (318)
T ss_dssp             CTTCBCEEECT--TSEEE-EEE-------TTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             cccceEEEECC--CCEEE-EEe-------CCEEEEEECCCCC-EEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEE
Confidence            33456799999  56544 443       8899999998765 23334444688889999999998 6999999999999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +|+++++   +.+..+.+|...+.++.+.  +. .+++++.++.+++|+.... ..+..+..|...+..+.+.++ ++++
T Consensus        93 iw~~~~~---~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  165 (318)
T 4ggc_A           93 LWDVQQQ---KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHL  165 (318)
T ss_dssp             EEETTTT---EEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEE
T ss_pred             EeecCCc---eeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-CCEE
Confidence            9999876   7788888999998877665  34 8999999999999998876 455677889999999999998 8999


Q ss_pred             EEEeCCCeEEEEeCCCCCc----eeeeccCccceEEEEecCCCCcEE--EEEecCCcEEEEEccCCCccEEEEecCCCce
Q 021121          166 CSASGDCTLRIWDVREMGS----TMIIPAHEFEILACDWNKYDDCLI--ASASVDKSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      ++++.||.|++||+++++.    ......+...+.+++++|.....+  ++++.++.|++||.+....  .....+...+
T Consensus       166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~~~~~v  243 (318)
T 4ggc_A          166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQV  243 (318)
T ss_dssp             EEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE--EEEEECSSCE
T ss_pred             EEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc--cccccceeee
Confidence            9999999999999988653    334456778899999999556555  4566789999999988653  3344567789


Q ss_pred             eEEEecCCCCeeEEe-eecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          240 RKVKFSPHRRNLLAS-CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+.|+|+++.++++ |+.|+.|++||+++++ ++..+.+|.+.|++++|+|+ +.+|+||+.||+|++||+...
T Consensus       244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~gH~~~V~~l~~spd-g~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSLTMSPD-GATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEECCCSSCEEEEEECTT-SSCEEEEETTTEEEEECCSCC
T ss_pred             eeeeecccccceEEEEEcCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEECCCC
Confidence            999999999864433 3479999999999886 66889999999999999999 889999999999999999653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-43  Score=288.59  Aligned_cols=252  Identities=23%  Similarity=0.316  Sum_probs=209.3

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iw  134 (317)
                      .+|...|++++|+|++ .+|++|+.|++|++||+..+ ....+..+.+|..+|.+++|+++  +. +|++|+.|++|++|
T Consensus        10 ~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iW   86 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNG-GQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIW   86 (316)
T ss_dssp             ----CCEEEEEECGGG-CEEEEEETTTEEEEEEEETT-EEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSCEEEE
T ss_pred             ccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCC-CcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCEEEEE
Confidence            3789999999999998 69999999999999999754 11245678899999999999863  55 89999999999999


Q ss_pred             EcCCC--ceeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCCc---eeeeccCccceEEEEecCCC----
Q 021121          135 TVDRP--TSVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMGS---TMIIPAHEFEILACDWNKYD----  204 (317)
Q Consensus       135 d~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~----  204 (317)
                      |++++  +....+.+|...|.+++|+|++ +.+|++++.|+.|++||++....   ...+..|...+.+++|+| +    
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~  165 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPG  165 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC-
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCc
Confidence            99887  3566778899999999999973 67899999999999999987633   345567888999999998 4    


Q ss_pred             -------------CcEEEEEecCCcEEEEEccCCC--ccEEEEecCCCceeEEEecCCC---CeeEEeeecCCeEEEEec
Q 021121          205 -------------DCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHR---RNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       205 -------------~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~vwd~  266 (317)
                                   +++|++|+.|+.|++||++...  .+...+.+|...|++++|+|++   ..+|++++.|++|++|++
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                         4689999999999999997543  2456678999999999999986   237999999999999998


Q ss_pred             ccc---cceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          267 MVE---DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       267 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+.   +.....+..|...|.+++|+|+ +.+|++++.||.|++|+....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSIT-ANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTT-TCCEEEEESSSCEEEEEECTT
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEECCC
Confidence            763   1123345678899999999999 789999999999999998643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.7e-42  Score=279.72  Aligned_cols=246  Identities=21%  Similarity=0.314  Sum_probs=215.6

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC--CCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      +|.+.|++++|+|+++.+|++|+.|++|++|++.....  ..++..+.+|...|.+++|+|++. ++++++.|+.|++||
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDKTLRLWD   93 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-EEEEEeCCCEEEEEE
Confidence            79999999999998767999999999999999874321  234667889999999999999998 999999999999999


Q ss_pred             cCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-----CCcEEEE
Q 021121          136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-----DDCLIAS  210 (317)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~~  210 (317)
                      +++++.+..+.+|...|.+++|+|+ +.++++++.|+.|++||++ ++.+..+.+|...+.++++.|.     ++..+++
T Consensus        94 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s  171 (319)
T 3frx_A           94 VATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS  171 (319)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEE
T ss_pred             CCCCCeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEE
Confidence            9999999999999999999999998 8999999999999999996 4567778889999999999983     2348999


Q ss_pred             EecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121          211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      ++.|+.|++||+++.+ ....+.+|...|++++|+|+++ +|++++.||.|++||+.+.+ .+..+.. ...|.+++|+|
T Consensus       172 ~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~sp  247 (319)
T 3frx_A          172 AGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKK-AMYTLSA-QDEVFSLAFSP  247 (319)
T ss_dssp             EETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE-EEEEEEC-CSCEEEEEECS
T ss_pred             EeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-EEEEecC-CCcEEEEEEcC
Confidence            9999999999999865 4677889999999999999998 79999999999999999876 4455554 46799999999


Q ss_pred             ccCCeEEEeecCCcEEEEecCC
Q 021121          291 LVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       291 ~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      + +.+|++++.+ .+++|+++.
T Consensus       248 ~-~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          248 N-RYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             S-SSEEEEEETT-EEEEEEETT
T ss_pred             C-CCEEEEEcCC-CcEEEEeCc
Confidence            8 7788877755 599999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3e-43  Score=293.67  Aligned_cols=250  Identities=20%  Similarity=0.373  Sum_probs=219.5

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      ..+|.+.|++++|+|++ .+|++|+.||+|++||+.++   .....+..|...|.+++|+|++. ++++|+.|+.+++||
T Consensus        62 l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~-~las~~~d~~v~iw~  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQ-SVACGGLDSACSIFN  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSS-EEEECCSSSCCEEEE
T ss_pred             ccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCC-EEEEeeCCCcEEEEE
Confidence            34799999999999998 69999999999999998766   67778889999999999999998 999999999999999


Q ss_pred             cCCCc-------eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-----ccCccceEEEEecCC
Q 021121          136 VDRPT-------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-----PAHEFEILACDWNKY  203 (317)
Q Consensus       136 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~~~  203 (317)
                      +.+..       ....+.+|.+.+.++.|.|+++..+++++.|++|++||+++++.+..+     .+|...+.++++++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence            97532       345677899999999999986778999999999999999999887766     568889999999887


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc----
Q 021121          204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH----  279 (317)
Q Consensus       204 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----  279 (317)
                      +++++++|+.|+.|++||++....++..+.+|...|++++|+|+++ +|++|+.|++|++||+++++. +..+..+    
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~  294 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRN  294 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEE-EEEECCCCSSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcE-EEEeccccccc
Confidence            8899999999999999999866566888999999999999999998 799999999999999998763 3333332    


Q ss_pred             ---cceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          280 ---TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       280 ---~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                         ...|++++|+|+ +.+|++|+.||.|++||+...
T Consensus       295 ~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          295 DNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             CCSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTC
T ss_pred             ccccCceEEEEECCC-CCEEEEEECCCCEEEEECCCC
Confidence               234899999999 889999999999999998654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-42  Score=292.82  Aligned_cols=290  Identities=16%  Similarity=0.300  Sum_probs=236.0

Q ss_pred             eeEEEEecCCCCeEEEE-EecccccccCceEEEEecCCCCCcceeee-eecCCCCeeEEEecC-CCCCeEEEEEcCCeEE
Q 021121           10 GYSVKFSPFYESRLAVA-TAQNFGILGNGRVHVLDLSPAAPALTELV-AFDTADGVYDLAWSE-SHDSLLIAAVADGSVK   86 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~-~~~~~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~   86 (317)
                      ...++++|  +...+++ ++.      +|.|+||++........... ...|...|++++|+| ++ .+|++|+.||.|+
T Consensus        37 ~~~~~~~~--~~~~~~~~~~~------~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~  107 (402)
T 2aq5_A           37 SGFCAVNP--KFMALICEASG------GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVM  107 (402)
T ss_dssp             SCSEEECS--SEEEEEBCCSS------SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEE
T ss_pred             CCcEEECC--CeEEEEEEEcC------CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEE
Confidence            34577888  3433333 333      89999999976532212222 236899999999999 55 7999999999999


Q ss_pred             EEEeCCCCCC----CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe--eccccceEEEEEecC
Q 021121           87 IYDTALPPTA----NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF--KEHAYCVYNATWNPR  160 (317)
Q Consensus        87 v~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~  160 (317)
                      +|++..+...    .++..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+  ..|...|.+++|+|+
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  187 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD  187 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred             EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence            9999865321    4567788999999999999998559999999999999999999999998  789999999999998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeee-ccCccc-eEEEEecCCCCcEEEEE---ecCCcEEEEEccCCCccEEEEe-c
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMII-PAHEFE-ILACDWNKYDDCLIASA---SVDKSIKIWDVRNYRVPIAVLN-G  234 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~i~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~~~-~  234 (317)
                       +.+|++++.||.|++||+++++.+..+ ..|... +.++.|+| ++.++++|   +.|+.|++||+++.+.++.... .
T Consensus       188 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          188 -GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             -SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             -CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence             889999999999999999999888887 677765 89999999 89999999   7899999999998775444433 5


Q ss_pred             CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |...+.+++|+|+++.++++++.||.|++||+.+++..+..+..  |...|.+++|+|+ +.++++  .++.+++|++..
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~-~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK-RGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG-GGSCGG--GTEEEEEEEEET
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecc-ccccee--cceeEEEEEcCC
Confidence            77789999999999954456778999999999988753444444  4589999999998 666654  567999999876


Q ss_pred             C
Q 021121          313 D  313 (317)
Q Consensus       313 ~  313 (317)
                      .
T Consensus       343 ~  343 (402)
T 2aq5_A          343 R  343 (402)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-41  Score=280.33  Aligned_cols=247  Identities=21%  Similarity=0.300  Sum_probs=218.4

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|...|++++|+|++ .+|++|+.||+|++||....   .....+..|...|.+++|+|++. .+++++.|+.+++|++
T Consensus        61 ~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYPL  135 (354)
T ss_dssp             ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSS-EEEEESTTSEEEEEEC
T ss_pred             cCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCC-EEEEeeCCCCEEEEEE
Confidence            4799999999999998 69999999999999998765   56667778899999999999998 9999999999999998


Q ss_pred             CCC------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-CCcEEE
Q 021121          137 DRP------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-DDCLIA  209 (317)
Q Consensus       137 ~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~  209 (317)
                      ...      .....+..|...|.+++|+|+ +..+++++.|++|++||+++++.+..+.+|...+.+++++|. ++++|+
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            653      345667789999999999998 889999999999999999999999999999999999999883 368999


Q ss_pred             EEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--ccceeEeEE
Q 021121          210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--HTEFAVGVD  287 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v~~~~  287 (317)
                      +|+.|+.|++||+++++ ++..+.+|...|++++|+|++. +|++++.|++|++||++..+. ...+..  +...+.+++
T Consensus       215 sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVD  291 (354)
T ss_dssp             EEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEE
Confidence            99999999999999876 4788889999999999999998 799999999999999988753 333332  334789999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |+|+ +.+|++|+.|+.|++||+...
T Consensus       292 ~s~~-g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          292 FSLS-GRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred             EeCC-CCEEEEEECCCcEEEEECCCC
Confidence            9998 889999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.6e-42  Score=289.40  Aligned_cols=282  Identities=15%  Similarity=0.171  Sum_probs=231.9

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-ecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-FDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      .+....|+|  ++.++++++.      +|.|++||+....    .... ..|...|++++|+|++ .+|++|+.|+.|++
T Consensus        99 ~~~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~i  165 (420)
T 3vl1_A           99 YTAVDTAKL--QMRRFILGTT------EGDIKVLDSNFNL----QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKI  165 (420)
T ss_dssp             EEEEEEECS--SSCEEEEEET------TSCEEEECTTSCE----EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred             ceEEEEEec--CCCEEEEEEC------CCCEEEEeCCCcc----eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEE
Confidence            344456788  5566666664      9999999988553    2223 3789999999999998 59999999999999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec---cccceEEEEE-------
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE---HAYCVYNATW-------  157 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~-------  157 (317)
                      ||+..+   +....+.+|...|.+++|+|++. +|++++.||.|++||+++++.+..+..   +...+.+++|       
T Consensus       166 wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          166 WSVKDG---SNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             EETTTC---CCCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             EeCCCC---cCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence            999876   67778889999999999999988 999999999999999999998888874   3445555555       


Q ss_pred             --------------ecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCc-EEEEEecCCcEEEEE
Q 021121          158 --------------NPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDC-LIASASVDKSIKIWD  221 (317)
Q Consensus       158 --------------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-~l~~~~~d~~i~v~d  221 (317)
                                    +|+ ++++++++.||.|++||+++++....+. .|...+.+++|+| ++. +|++++.||.|++||
T Consensus       242 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             CGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEE
T ss_pred             eeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEE
Confidence                          566 7899999999999999999988777664 4788999999999 776 999999999999999


Q ss_pred             ccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc--------eeeeeecccceeEeEEEEecc
Q 021121          222 VRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA--------LVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       222 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      +++.+.++..+.. |...|.++.+. +++ +|++++.|+.|++||+...+.        ....+..|...|.+++|+|+ 
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  396 (420)
T 3vl1_A          320 LRSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD-  396 (420)
T ss_dssp             TTCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC-
T ss_pred             cCCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC-
Confidence            9988766667666 67788888665 565 799999999999999887421        12345678889999999999 


Q ss_pred             CC---eEEEeecCCcEEEEecCC
Q 021121          293 EG---LLASTGWDELVYVWQQGM  312 (317)
Q Consensus       293 ~~---~l~s~~~dg~i~~w~~~~  312 (317)
                      +.   .+++++.+|.+.+|+++.
T Consensus       397 ~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          397 DESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCCcceEEEEcCCceEEEEeccC
Confidence            56   677777899999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-41  Score=277.90  Aligned_cols=246  Identities=23%  Similarity=0.403  Sum_probs=203.9

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-cc-CCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HE-HTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      .|...|.+++|+|+   +|++|+.|+.|++|++..+ .......+ .. |...|.+++|+|++. +|++++.|+.|++||
T Consensus        12 ~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~   86 (330)
T 2hes_X           12 LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWA   86 (330)
T ss_dssp             CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred             cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEE
Confidence            68999999999975   8999999999999999754 12233344 34 999999999999988 999999999999999


Q ss_pred             cCC-------CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC----CceeeeccCccceEEEEecCCC
Q 021121          136 VDR-------PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM----GSTMIIPAHEFEILACDWNKYD  204 (317)
Q Consensus       136 ~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~i~~~~~~  204 (317)
                      ++.       .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||++..    +.+..+..|...|.+++|+| +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~  164 (330)
T 2hes_X           87 KEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-S  164 (330)
T ss_dssp             C-------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-S
T ss_pred             cccCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-C
Confidence            853       3456678899999999999998 899999999999999999533    34567788999999999999 9


Q ss_pred             CcEEEEEecCCcEEEEEccCCC-ccEEEEecCCCceeEEEecCC--CCeeEEeeecCCeEEEEeccccc-------ceee
Q 021121          205 DCLIASASVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPH--RRNLLASCSYDMTVCLWDFMVED-------ALVG  274 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~vwd~~~~~-------~~~~  274 (317)
                      +.+|++++.|+.|++||.+... .++..+.+|...|.+++|+|+  +. +|++++.|++|++||+....       ....
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~  243 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA  243 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence            9999999999999999988653 357788899999999999998  54 69999999999999997652       1233


Q ss_pred             eeec-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          275 RYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       275 ~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+.. |...|.+++|++  +.+|++++.||.|++|+....
T Consensus       244 ~~~~~h~~~v~~v~~s~--~~~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          244 ILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ECCSCCSSCEEEEEECT--TSCEEEEETTSCEEEEEEETT
T ss_pred             ecccccccceEEEEEcC--CCEEEEEeCCCEEEEEEcCCC
Confidence            3444 889999999996  458999999999999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=290.00  Aligned_cols=291  Identities=15%  Similarity=0.287  Sum_probs=227.0

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-------cceee-eeecCC------------CCe
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-------ALTEL-VAFDTA------------DGV   63 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-------~~~~~-~~~~~~------------~~v   63 (317)
                      +.+...|++++|+|  ++.++++++.      ||.|+||++.....       ..... ....|.            ..|
T Consensus        25 ~~~~~~V~~v~~s~--~g~~la~g~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           25 VAEADIISTVEFNH--SGELLATGDK------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             CCGGGSEEEEEECS--SSSEEEEEET------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred             ccccCcEEEEEECC--CCCEEEEEcC------CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce
Confidence            44678999999999  6777777765      99999999986541       11112 222576            889


Q ss_pred             eEEEecCCCC-CeEEEEEcCCeEEEEEeCCCCCC------------------------------------CCcee-eccC
Q 021121           64 YDLAWSESHD-SLLIAAVADGSVKIYDTALPPTA------------------------------------NPIRS-LHEH  105 (317)
Q Consensus        64 ~~~~~~~~~~-~~l~~~~~dg~i~v~~~~~~~~~------------------------------------~~~~~-~~~~  105 (317)
                      ++++|+|+++ .+|++++.|+.|++|++......                                    .+... ..+|
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            9999999863 48999999999999998753110                                    00011 3579


Q ss_pred             CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeE-------EeeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121          106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVR-------TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW  177 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (317)
                      ...|.+++|+|++. +|++| .|+.|++||+++. +...       .+..|...|.+++|+|++.+++++++.||.|++|
T Consensus       177 ~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          177 TYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             SSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            99999999999988 88998 7999999999843 3333       2457889999999999944999999999999999


Q ss_pred             eCCCCCc----eeeeccCcc------------ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCc---
Q 021121          178 DVREMGS----TMIIPAHEF------------EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA---  238 (317)
Q Consensus       178 d~~~~~~----~~~~~~~~~------------~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---  238 (317)
                      |+++++.    ...+..|..            .|.+++|+| ++++|++++. +.|++||+++...++..+..|...   
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK  332 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred             ECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence            9999876    677777775            899999999 9999999998 999999999744457777777532   


Q ss_pred             ------------eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-----------------------------
Q 021121          239 ------------VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-----------------------------  277 (317)
Q Consensus       239 ------------v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-----------------------------  277 (317)
                                  +..++|+|+++ +|++|+.||.|++||+.+++..  .+.                             
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDI--TLEASRENNKPRTVLKPRKVCASGKRKKDEIS  409 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEE--EEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred             ccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcce--eeeecccccccccccCCccccccCCccccccc
Confidence                        23499999998 6899999999999999887632  111                             


Q ss_pred             ----cccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          278 ----HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       278 ----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                          .+...|..++|+|+ +.+|++++.++ +++|.-.
T Consensus       410 ~~~~~~~~~i~~~~~~p~-~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          410 VDSLDFNKKILHTAWHPK-ENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             GGGCCTTSCCCEEEECSS-SSEEEEECSSC-EEEEECC
T ss_pred             ccccccCCceeEEEECCC-CCEEEEEecce-eeeeccc
Confidence                23456889999999 78999888776 7888754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-41  Score=283.46  Aligned_cols=266  Identities=20%  Similarity=0.346  Sum_probs=219.0

Q ss_pred             eEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccC-----------
Q 021121           38 RVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEH-----------  105 (317)
Q Consensus        38 ~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-----------  105 (317)
                      ...+|+...... .......++|...|.+++|+|++ .+|++|+ ++.+++|++..+   ..+..+..|           
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g---~~~~~l~~~~~~~~~~~~~~  115 (393)
T 1erj_A           41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDG---SLVARLSDDSAANKDPENLN  115 (393)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTC---CEEEEECC------------
T ss_pred             eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCC---CEEEEecCcccccccccccc
Confidence            344666543321 11223345799999999999998 5888876 688999999765   344444333           


Q ss_pred             -------CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121          106 -------TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD  178 (317)
Q Consensus       106 -------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (317)
                             ...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+ +..|++++.|+.|++||
T Consensus       116 ~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          116 TSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             -----CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             ccccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEE
Confidence                   23499999999998 9999999999999999999999999999999999999999 88999999999999999


Q ss_pred             CCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE-------ecCCCceeEEEecCCCCee
Q 021121          179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL-------NGHGYAVRKVKFSPHRRNL  251 (317)
Q Consensus       179 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~  251 (317)
                      +++++....+. +...+.+++|+|.+++++++++.|+.|++||++++.. +..+       .+|...|.+++|+|+++ +
T Consensus       194 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~  270 (393)
T 1erj_A          194 LRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ-S  270 (393)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS-E
T ss_pred             CCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCC-E
Confidence            99988777765 5667999999997889999999999999999988653 4444       57889999999999998 7


Q ss_pred             EEeeecCCeEEEEeccccc-----------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          252 LASCSYDMTVCLWDFMVED-----------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       252 l~~~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |++++.|+.|++||+++..           .+...+.+|...|.+++|+|+ +.+|++|+.||.|++||+....
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCe
Confidence            9999999999999997642           234567789999999999998 7899999999999999987653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.2e-41  Score=276.75  Aligned_cols=281  Identities=12%  Similarity=0.168  Sum_probs=236.3

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCC-eEEEEEcCC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDS-LLIAAVADG   83 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg   83 (317)
                      .|...|++++|+|  ++.++++++.      ||.|++|++..............|...|.+++|+|++ . +|++|+.||
T Consensus         9 ~h~~~v~~~~~s~--~~~~l~~~~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg   79 (342)
T 1yfq_A            9 APKDYISDIKIIP--SKSLLLITSW------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQG   79 (342)
T ss_dssp             CCSSCEEEEEEEG--GGTEEEEEET------TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTS
T ss_pred             CCCCcEEEEEEcC--CCCEEEEEcC------CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCC
Confidence            3778999999999  5555565554      9999999998776433444555889999999999997 7 899999999


Q ss_pred             eEEEEEe-CCCCCCCCceeecc--CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC---------CceeEEeeccccc
Q 021121           84 SVKIYDT-ALPPTANPIRSLHE--HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR---------PTSVRTFKEHAYC  151 (317)
Q Consensus        84 ~i~v~~~-~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~  151 (317)
                      .|++||+ ...    ....+..  |...|.+++|+| +. ++++++.|+.|++||+++         ++.+..+. |...
T Consensus        80 ~i~~wd~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~  152 (342)
T 1yfq_A           80 EILKVDLIGSP----SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK  152 (342)
T ss_dssp             CEEEECSSSSS----SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred             eEEEEEeccCC----ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence            9999998 654    3466777  999999999999 66 999999999999999987         76666666 8889


Q ss_pred             eEEEEEecCCCCeEEEEeCCCeEEEEeCCC-CCc--eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC---
Q 021121          152 VYNATWNPRHSDVFCSASGDCTLRIWDVRE-MGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY---  225 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~---  225 (317)
                      +.+++|+|+ .  +++++.|+.|++||+++ +..  ......+...+.+++|+|.+++++++++.||.|++||++..   
T Consensus       153 v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  229 (342)
T 1yfq_A          153 IFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             EEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eEEEEecCC-c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence            999999987 4  88999999999999998 543  33445678899999999845779999999999999999876   


Q ss_pred             --CccEEEEecCCC---------ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc-cceeEeEEEEeccC
Q 021121          226 --RVPIAVLNGHGY---------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH-TEFAVGVDMSVLVE  293 (317)
Q Consensus       226 --~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  293 (317)
                        ......+..|..         .|.+++|+|+++ +|++++.||.|++||+.+++ .+..+..| ...|.+++  |+ +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~--~~-~  304 (342)
T 1yfq_A          230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDSVVKIA--CS-D  304 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE-EEEECCCCSSSEEEEEE--EC-S
T ss_pred             cccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHh-HhhhhhcccCCCceEec--CC-C
Confidence              255777777765         999999999998 79999999999999999886 56778887 99999999  87 8


Q ss_pred             CeEEEeecCCc-EEEEe
Q 021121          294 GLLASTGWDEL-VYVWQ  309 (317)
Q Consensus       294 ~~l~s~~~dg~-i~~w~  309 (317)
                      .+|++++.||. .+.|.
T Consensus       305 ~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          305 NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEEECTHHHHCSS
T ss_pred             CeEEEEecCCccccccc
Confidence            89999999998 44444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-40  Score=267.89  Aligned_cols=252  Identities=19%  Similarity=0.274  Sum_probs=206.7

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcCC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVADG   83 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg   83 (317)
                      .|...|++++|+|  ++.++++++.      |+.|+|||+....... .....+|.+.|.+++|+|+ ...+|++|+.|+
T Consensus         7 ~h~~~V~~~~~s~--~g~~las~s~------D~~v~iw~~~~~~~~~-~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            7 AHNEMIHDAVMDY--YGKRMATCSS------DKTIKIFEVEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             SCSSCEEEEEECT--TSSEEEEEET------TSCEEEEEBCSSCBCC-CEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             CCcCceEEEEECC--CCCEEEEEeC------CCEEEEEecCCCCcEE-EEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            3788999999999  5777777765      9999999997543111 1223379999999999864 236999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEEEcCCCc--eeEEeeccccceEEEEEec
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLWTVDRPT--SVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~  159 (317)
                      +|++||+..+ ....+..+..|...|.+++|+|+  +. +|++++.|+.|++||++++.  ....+..|...|.+++|+|
T Consensus        78 ~v~iWd~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           78 KVMIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             EEEEEEBSSS-CBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             EEEEEEcCCC-ceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            9999999764 22355667789999999999997  65 99999999999999998763  2456778999999999999


Q ss_pred             CC------------CCeEEEEeCCCeEEEEeCCCCC----ceeeeccCccceEEEEecCCC---CcEEEEEecCCcEEEE
Q 021121          160 RH------------SDVFCSASGDCTLRIWDVREMG----STMIIPAHEFEILACDWNKYD---DCLIASASVDKSIKIW  220 (317)
Q Consensus       160 ~~------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~v~  220 (317)
                      +.            +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+| +   +.+|++++.|++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEEEEEECCCcEEEE
Confidence            62            4689999999999999998876    4567788999999999999 6   5899999999999999


Q ss_pred             EccCCCcc--EEEE--ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          221 DVRNYRVP--IAVL--NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       221 d~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      |++.....  ...+  ..|...|.+++|+|+++ +|++++.|+.|++|+....
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTT
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECCC
Confidence            99874321  2233  46788999999999998 7999999999999997643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=277.56  Aligned_cols=293  Identities=15%  Similarity=0.231  Sum_probs=231.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee----------ecCCCCeeEEEecCCCCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA----------FDTADGVYDLAWSESHDSL   75 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~   75 (317)
                      |...|.+++|+|. ++.++++++.      ||.|++||+............          ..|...|.+++|+|++..+
T Consensus        42 h~~~v~~~~~s~~-~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           42 HGGGINTLDIEPV-EGRYMLSGGS------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             CSSCEEEEEECTT-TCCEEEEEET------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             cCCcEEEEEEecC-CCCEEEEEcC------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            7889999999994 2444555544      999999999876532221110          1388899999999955579


Q ss_pred             EEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCC--CEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR--DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      |++++.||.|++||+...   .....+. +...+.++.|+|.+.  .++++++.||.|++||+++++.+..+..|...|.
T Consensus       115 l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             EEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             EEEEeCCCeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            999999999999999865   4444444 778899999988543  2899999999999999999999999999999999


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCC-ceeee---------------ccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMG-STMII---------------PAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      +++|+|++..++++++.||.|++||+++.. ....+               ..|...|.+++|+| ++++|++++.|+.|
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  269 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeE
Confidence            999999955579999999999999998765 23332               46888999999999 99999999999999


Q ss_pred             EEEEccCCCccEEEEec-----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          218 KIWDVRNYRVPIAVLNG-----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      ++||+++.+... ....     ....+........+. .+++++.++.|++||+.+++ .+..+.+|...|++++|+|+ 
T Consensus       270 ~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~-  345 (408)
T 4a11_B          270 RLWNSSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSS-EFVFVPYGSTIAVYTVYSGE-QITMLKGHYKTVDCCVFQSN-  345 (408)
T ss_dssp             EEEETTTCCBCC-CCCCCCCCCCSSCCCCEECCSSSS-CEEEEEETTEEEEEETTTCC-EEEEECCCSSCEEEEEEETT-
T ss_pred             EEEECCCCccce-eccccccccccccceeEEecCCCc-eEEEEecCCEEEEEECcCCc-ceeeeccCCCeEEEEEEcCC-
Confidence            999999876422 2111     111222222222333 57777889999999999876 66788999999999999998 


Q ss_pred             CCeEEEeecCCcEEEEecCCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +.+|++++.||.|++|++...+
T Consensus       346 ~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          346 FQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             TTEEEEEETTSCEEEEEECC--
T ss_pred             CCEEEEECCCCeEEEEeCCCCC
Confidence            7899999999999999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-40  Score=303.88  Aligned_cols=289  Identities=21%  Similarity=0.293  Sum_probs=248.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|+|  ++.++++++.      +|.|++||+..... .  .....|...|.+++|+|++ .+|++|+.||.|
T Consensus        12 h~~~v~~i~~sp--~~~~la~~~~------~g~v~iwd~~~~~~-~--~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i   79 (814)
T 3mkq_A           12 RSDRVKGIDFHP--TEPWVLTTLY------SGRVEIWNYETQVE-V--RSIQVTETPVRAGKFIARK-NWIIVGSDDFRI   79 (814)
T ss_dssp             ECSCEEEEEECS--SSSEEEEEET------TSEEEEEETTTTEE-E--EEEECCSSCEEEEEEEGGG-TEEEEEETTSEE
T ss_pred             CCCceEEEEECC--CCCEEEEEeC------CCEEEEEECCCCce-E--EEEecCCCcEEEEEEeCCC-CEEEEEeCCCeE
Confidence            788999999999  5666666665      89999999977541 2  2223688999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++||+.++   +....+..|...|.+++|+|+++ ++++++.||.|++||++++ .....+..|...|.+++|+|.++..
T Consensus        80 ~vw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           80 RVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (814)
T ss_dssp             EEEETTTC---CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             EEEECCCC---cEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence            99999876   67778889999999999999998 8999999999999999987 6677888899999999999944889


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCc-cceEEEEecCC-CCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHE-FEILACDWNKY-DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +++++.||.|++||+++++....+..+. ..+.+++|+|. ++.++++++.|+.|++||+++.+ .+..+.+|...|.++
T Consensus       156 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEEEECCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCCCCEEEE
Confidence            9999999999999999888777776554 78999999973 67799999999999999998865 477888899999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +|+|+++ +|++++.||.|++||+.+++ ....+..|...+.+++|+|++...+++++.++.+.+|++...
T Consensus       235 ~~~~~~~-~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          235 VFHPTLP-IIISGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EECSSSS-EEEEEETTSCEEEEETTTCS-EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             EEcCCCC-EEEEEeCCCeEEEEECCCCc-EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence            9999998 79999999999999999876 667788888999999999985455455556777899998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-40  Score=271.45  Aligned_cols=246  Identities=19%  Similarity=0.287  Sum_probs=206.9

Q ss_pred             ecCCCCeeEEEe-----cC-CCCCeEEEEEcCCeEEEEEeCCCCC----CCCceeeccCCcceEEEEEecCCCCEEEEEc
Q 021121           57 FDTADGVYDLAW-----SE-SHDSLLIAAVADGSVKIYDTALPPT----ANPIRSLHEHTREVHSADYNPTRRDSFITSS  126 (317)
Q Consensus        57 ~~~~~~v~~~~~-----~~-~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  126 (317)
                      .+|...|++++|     ++ ++ .+|++|+.|++|++||+...+.    ..+...+.+|...|.+++|+|++. ++++++
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~s   95 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FAISSS   95 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT-EEEEEE
T ss_pred             ccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC-EEEEEc
Confidence            379999999999     76 65 6999999999999999975422    134556789999999999999988 999999


Q ss_pred             CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecCC
Q 021121          127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKY  203 (317)
Q Consensus       127 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~  203 (317)
                      .|+.|++||+++++.+..+.+|...|.+++|+|+ ++++++++.|+.|++||++.. .....   ..|...+.+++|+| 
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~-  172 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP-  172 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS-TTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC-
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC-CCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecc-
Confidence            9999999999999999999999999999999998 889999999999999999743 33222   26788899999999 


Q ss_pred             CC----------cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee
Q 021121          204 DD----------CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV  273 (317)
Q Consensus       204 ~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  273 (317)
                      ++          .++++++.|+.|++||.+  ......+.+|...|.+++|+|+++ +|++|+.||.|++||+.......
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCS
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccc
Confidence            54          789999999999999943  234667889999999999999998 79999999999999996544333


Q ss_pred             eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          274 GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       274 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+ .+...|.+++|+|+ +.+++ ++.|+.|++|++...
T Consensus       250 ~~~-~~~~~v~~v~~sp~-~~~la-~~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          250 REF-DAGSTINQIAFNPK-LQWVA-VGTDQGVKIFNLMTQ  286 (343)
T ss_dssp             EEE-ECSSCEEEEEECSS-SCEEE-EEESSCEEEEESSSC
T ss_pred             eee-cCCCcEEEEEECCC-CCEEE-EECCCCEEEEEeCCC
Confidence            333 34567999999998 66655 556888999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.3e-40  Score=272.49  Aligned_cols=255  Identities=19%  Similarity=0.288  Sum_probs=217.0

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-CCceeeccCCcceEEEEEec--CCCCEEEEEcCCCEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNP--TRRDSFITSSWDDTVKL  133 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~i  133 (317)
                      .+|.+.|++++|+|++ .+|++|+.||.|++||+...... .....+.+|...|.+++|+|  ++. +|++++.||.|++
T Consensus         8 ~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~v   85 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTVKL   85 (351)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCEEE
T ss_pred             cccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeEEE
Confidence            3799999999999998 69999999999999999864221 34566778999999999999  466 9999999999999


Q ss_pred             EEcCCC---------ceeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCCceeeec-------------c
Q 021121          134 WTVDRP---------TSVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMGSTMIIP-------------A  190 (317)
Q Consensus       134 wd~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~  190 (317)
                      ||++++         +.+..+..|...|.+++|+|+. +.++++++.||.|++||+++++.+..+.             .
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999887         4577788899999999999974 6789999999999999999887654432             5


Q ss_pred             CccceEEEEecCC--CCcEEEEEecCCcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCC---eeEEeeecCCeEEEE
Q 021121          191 HEFEILACDWNKY--DDCLIASASVDKSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRR---NLLASCSYDMTVCLW  264 (317)
Q Consensus       191 ~~~~v~~i~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~vw  264 (317)
                      +...+.+++|+|.  ++.++++++.++.+.+|+....+. .+..+.+|...|++++|+|++.   .+|++++.||.|++|
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence            6778999999993  389999999999998887766542 2566778999999999999982   389999999999999


Q ss_pred             eccccc---------------------------------------------ceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          265 DFMVED---------------------------------------------ALVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       265 d~~~~~---------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      |++...                                             ..+..+.+|...|++++|+|+ +.+|+++
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~  324 (351)
T 3f3f_A          246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT-GTILSSA  324 (351)
T ss_dssp             EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS-SCCEEEE
T ss_pred             eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC-CCEEEEe
Confidence            998741                                             355667889999999999998 7899999


Q ss_pred             ecCCcEEEEecCCCC
Q 021121          300 GWDELVYVWQQGMDP  314 (317)
Q Consensus       300 ~~dg~i~~w~~~~~~  314 (317)
                      +.||.|++|++....
T Consensus       325 ~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          325 GDDGKVRLWKATYSN  339 (351)
T ss_dssp             ETTSCEEEEEECTTS
T ss_pred             cCCCcEEEEecCcCc
Confidence            999999999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=276.59  Aligned_cols=251  Identities=23%  Similarity=0.373  Sum_probs=216.7

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iw  134 (317)
                      ..|...|++++|+|++ .+|++|+.||.|++|++... .......+.+|...|.+++|+++  +. +|++++.||.|++|
T Consensus         8 ~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIW   84 (379)
T ss_dssp             EECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCEEEE
T ss_pred             cCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEEEEE
Confidence            3799999999999998 69999999999999999742 33566678899999999999877  66 99999999999999


Q ss_pred             EcCCCc--eeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccceEEEEecCC------
Q 021121          135 TVDRPT--SVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMG--STMIIPAHEFEILACDWNKY------  203 (317)
Q Consensus       135 d~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~------  203 (317)
                      |+++++  ....+..|...|.+++|+|+. +.++++++.||.|++||+++..  ....+..|...+.+++|+|.      
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            999986  677778899999999999974 6789999999999999999873  34456688999999999994      


Q ss_pred             ------CCcEEEEEecCCcEEEEEccCCCc---cEEEEecCCCceeEEEecCC---CCeeEEeeecCCeEEEEeccccc-
Q 021121          204 ------DDCLIASASVDKSIKIWDVRNYRV---PIAVLNGHGYAVRKVKFSPH---RRNLLASCSYDMTVCLWDFMVED-  270 (317)
Q Consensus       204 ------~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~vwd~~~~~-  270 (317)
                            ++.++++++.|+.|++||++....   ....+.+|...|.+++|+|+   +. +|++++.||.|++||+++++ 
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~  243 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQG  243 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTS
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCc
Confidence                  489999999999999999987653   34567789999999999999   55 89999999999999998864 


Q ss_pred             ---ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          271 ---ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       271 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                         ........|...|.+++|+|+ +.+|++++.||.|++|++..
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          244 PWKKTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSS-SCCEEEEESSSSEEEEEEEE
T ss_pred             cceeeeeccccCCCcEEEEEEcCC-CCEEEEecCCCcEEEEeCCC
Confidence               222333458889999999999 78999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.2e-39  Score=276.45  Aligned_cols=278  Identities=22%  Similarity=0.335  Sum_probs=231.8

Q ss_pred             cCcc-eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFN-GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~-v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |... +.++.|++   +. +++++.      ||.|++||+.+...   ......|...|.+++|+|++  ++++|+.||.
T Consensus       120 h~~~v~~~~~~~~---~~-l~sgs~------dg~i~vwd~~~~~~---~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~  184 (464)
T 3v7d_B          120 HMTSVITCLQFED---NY-VITGAD------DKMIRVYDSINKKF---LLQLSGHDGGVWALKYAHGG--ILVSGSTDRT  184 (464)
T ss_dssp             CSSSCEEEEEEET---TE-EEEEET------TSCEEEEETTTTEE---EEEECCCSSCEEEEEECSTT--EEEEEETTSC
T ss_pred             CCCCcEEEEEECC---CE-EEEEcC------CCcEEEEECCCCcE---EEEEeCCCcCEEEEEEcCCC--EEEEEeCCCC
Confidence            4444 46666644   44 444444      99999999987641   12223699999999999875  8999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEec--CCCCEEEEEcCCCEEEEEEcCCCce---------------------
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNP--TRRDSFITSSWDDTVKLWTVDRPTS---------------------  141 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~---------------------  141 (317)
                      |++||+.++   +....+.+|...|.+++|++  ++. ++++++.||.|++||++++..                     
T Consensus       185 i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          185 VRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             EEEEETTTT---EEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             EEEEECCCC---cEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            999999876   67788889999999999985  555 899999999999999987653                     


Q ss_pred             --eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          142 --VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       142 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                        ...+.+|...+.++.  ++ ++++++++.||.|++||+++++.+..+.+|...+.+++|+| +++++++++.|+.|++
T Consensus       261 ~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRI  336 (464)
T ss_dssp             TEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred             EEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Confidence              445667888888874  55 78999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      ||+++++ ++..+.+|...|.+++|++  . +|++++.||.|++||+.+.+....  ..+...+..++|+++ +.+++++
T Consensus       337 wd~~~~~-~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~l~~~  409 (464)
T 3v7d_B          337 WDLENGE-LMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVS-DNILVSG  409 (464)
T ss_dssp             EETTTTE-EEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEE--EECTTCCCEEEEEEC-SSEEEEE
T ss_pred             EECCCCc-EEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceeee--ecCCCCccEEEEEeC-CCEEEEe
Confidence            9999866 5888899999999999984  4 799999999999999998763322  245667888899998 7888888


Q ss_pred             ecCCcEEEEecCCCC
Q 021121          300 GWDELVYVWQQGMDP  314 (317)
Q Consensus       300 ~~dg~i~~w~~~~~~  314 (317)
                      + ||.|++||+....
T Consensus       410 ~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          410 S-ENQFNIYNLRSGK  423 (464)
T ss_dssp             E-TTEEEEEETTTCC
T ss_pred             c-CCeEEEEECCCCc
Confidence            8 9999999998753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-39  Score=277.13  Aligned_cols=274  Identities=22%  Similarity=0.422  Sum_probs=229.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...|++++|.   +..+ ++++.      ||.|++||+.+...   ......|...|.+++|  ++ .+|++|+.||.|
T Consensus       132 ~~~~v~~~~~d---~~~l-~~g~~------dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i  195 (435)
T 1p22_A          132 TSKGVYCLQYD---DQKI-VSGLR------DNTIKIWDKNTLEC---KRILTGHTGSVLCLQY--DE-RVIITGSSDSTV  195 (435)
T ss_dssp             SCCCEEEEECC---SSEE-EEEES------SSCEEEEESSSCCE---EEEECCCSSCEEEEEC--CS-SEEEEEETTSCE
T ss_pred             CCCcEEEEEEC---CCEE-EEEeC------CCeEEEEeCCCCeE---EEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeE
Confidence            34567777762   2444 44444      99999999987642   1222368899999999  44 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee---EEeeccccceEEEEEecCCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV---RTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ++||+.++   +.+..+..|...|.+++|++  . .+++|+.||.|++||+++++..   ..+.+|...|.+++|.   +
T Consensus       196 ~vwd~~~~---~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~  266 (435)
T 1p22_A          196 RVWDVNTG---EMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---D  266 (435)
T ss_dssp             EEEESSSC---CEEEEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---T
T ss_pred             EEEECCCC---cEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---C
Confidence            99999876   67788889999999999974  3 8999999999999999988765   5677899999999993   7


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      +++++++.||.|++||+++++.+..+..|...+.++.++   ++++++|+.||.|++||+++++ ++..+.+|...|.++
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~  342 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCI  342 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCC-EEEEEeCCcCcEEEE
Confidence            899999999999999999999999999999999999984   5699999999999999999876 478889999999999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccc--------eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDA--------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +|  ++. +|++|+.||.|++||+.+.+.        ....+.+|.+.|.+++|  + +.+|++++.||.|++||+...+
T Consensus       343 ~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          343 RF--DNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D-EFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EC--CSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C-SSCEEECCSSSEEEEEC-----
T ss_pred             Ee--cCC-EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C-CCEEEEEeCCCEEEEEECCCCC
Confidence            99  555 799999999999999987641        56778899999999999  4 7789999999999999997754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.1e-41  Score=273.28  Aligned_cols=251  Identities=19%  Similarity=0.228  Sum_probs=202.7

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC-CCCeEEEEEcCC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES-HDSLLIAAVADG   83 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg   83 (317)
                      .|...|++++|+|  ++.++++++.      |+.|++||+..... .......+|...|.+++|+|+ ...+|++|+.|+
T Consensus        11 ~H~~~V~~v~~s~--~g~~lasgs~------D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A           11 SHEDMIHDAQMDY--YGTRLATCSS------DRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             ---CCEEEEEECG--GGCEEEEEET------TTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             cccCeEEEeeEcC--CCCEEEEEeC------CCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence            4788999999999  5677777775      99999999976531 111223479999999999863 236999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEEEcCCCce---eEEeeccccceEEEEEe
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNATWN  158 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~  158 (317)
                      +|++||++.+ .......+.+|...|.+++|+|+  +. +|++|+.|+.|++||++++..   ...+..|...+.+++|+
T Consensus        82 ~v~iWd~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           82 KVIIWREENG-TWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             CEEEECCSSS-CCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred             EEEEEECCCC-cceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence            9999998754 22345567789999999999998  55 899999999999999987632   34456788899999999


Q ss_pred             cCC----------------CCeEEEEeCCCeEEEEeCCCC---CceeeeccCccceEEEEecCCCC----cEEEEEecCC
Q 021121          159 PRH----------------SDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACDWNKYDD----CLIASASVDK  215 (317)
Q Consensus       159 ~~~----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~d~  215 (317)
                      |+.                +.+|++++.|+.|++||++..   +....+.+|...|.+++|+| ++    .+|++++.|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCSCCEEEEEETTC
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCCCceEEEEcCCC
Confidence            873                368999999999999999755   35567788999999999999 64    8999999999


Q ss_pred             cEEEEEccCC---CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          216 SIKIWDVRNY---RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       216 ~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      +|++||++..   ......+..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus       239 ~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEECT
T ss_pred             eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEECC
Confidence            9999999763   212344567889999999999998 799999999999999763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-39  Score=308.89  Aligned_cols=286  Identities=23%  Similarity=0.355  Sum_probs=249.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||+.+... .  .....|...|.+++|+|++ .+|++|+.||.|
T Consensus       614 h~~~v~~~~~s~--~~~~l~s~~~------d~~i~vw~~~~~~~-~--~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v  681 (1249)
T 3sfz_A          614 HTDAVYHACFSQ--DGQRIASCGA------DKTLQVFKAETGEK-L--LDIKAHEDEVLCCAFSSDD-SYIATCSADKKV  681 (1249)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TSCEEEEETTTCCE-E--EEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             ccccEEEEEECC--CCCEEEEEeC------CCeEEEEECCCCCE-E--EEeccCCCCEEEEEEecCC-CEEEEEeCCCeE
Confidence            778999999999  6777777765      99999999987652 2  2223689999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCC-CCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTR-RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++||+.++   +.+..+.+|...|.+++|+|++ ..++++++.||.|++||+++++....+.+|...|.+++|+|+ +.+
T Consensus       682 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~~  757 (1249)
T 3sfz_A          682 KIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DEL  757 (1249)
T ss_dssp             EEEETTTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS-TTE
T ss_pred             EEEECCCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC-CCE
Confidence            99999876   7788888999999999999953 238899999999999999999999999999999999999998 889


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeecc-------------CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPA-------------HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      +++++.||.|++||+++++....+..             ....+.+++|+| ++..+++++ ++.+.+||+.+.......
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~-~~~v~~~d~~~~~~~~~~  835 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAA-KNKVLLFDIHTSGLLAEI  835 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT-TSSEEEEEE-TTEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCceeEE
Confidence            99999999999999998866555431             233688999999 899998887 689999999988764455


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ..+|...|.+++|+|+++ ++++++.||.|++||+.++. ....+.+|...|.+++|+|+ +..|++++.||.|++|++.
T Consensus       836 ~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spd-g~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          836 HTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRL-KVADCRGHLSWVHGVMFSPD-GSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             ECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTE-EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEHH
T ss_pred             cCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc-eeeecCCCccceEEEEECCC-CCEEEEEeCCCeEEEEEcc
Confidence            558999999999999998 79999999999999999876 56788899999999999998 8899999999999999975


Q ss_pred             C
Q 021121          312 M  312 (317)
Q Consensus       312 ~  312 (317)
                      .
T Consensus       913 ~  913 (1249)
T 3sfz_A          913 K  913 (1249)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-39  Score=284.90  Aligned_cols=284  Identities=13%  Similarity=0.190  Sum_probs=220.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCC---CeeEEEecCC-CCCeEEEEEc
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD---GVYDLAWSES-HDSLLIAAVA   81 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~l~~~~~   81 (317)
                      +...|.+++|+|++.. ++++++.      ||.|++||+.....   ......|..   .|.+++|+|+ + .+|++++.
T Consensus       159 ~~~~v~~~~~~~~~~~-~l~~~~~------d~~v~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~  227 (615)
T 1pgu_A          159 HSQRINACHLKQSRPM-RSMTVGD------DGSVVFYQGPPFKF---SASDRTHHKQGSFVRDVEFSPDSG-EFVITVGS  227 (615)
T ss_dssp             CSSCEEEEEECSSSSC-EEEEEET------TTEEEEEETTTBEE---EEEECSSSCTTCCEEEEEECSTTC-CEEEEEET
T ss_pred             CCccEEEEEECCCCCc-EEEEEeC------CCcEEEEeCCCcce---eeeecccCCCCceEEEEEECCCCC-CEEEEEeC
Confidence            6678999999995222 4444444      89999999876531   112225777   8999999999 7 69999999


Q ss_pred             CCeEEEEEeCCCCCCCCceee-c---cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec----------
Q 021121           82 DGSVKIYDTALPPTANPIRSL-H---EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE----------  147 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----------  147 (317)
                      ||.|++||+..+   +.+..+ .   .|...|.+++|+ ++. ++++++.||.|++||+++++.+..+..          
T Consensus       228 dg~i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  302 (615)
T 1pgu_A          228 DRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV  302 (615)
T ss_dssp             TCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred             CCeEEEEECCCC---CEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence            999999999866   566666 5   899999999999 776 999999999999999987655444332          


Q ss_pred             -----------------------------------cccc---------------------------------eEEEEEec
Q 021121          148 -----------------------------------HAYC---------------------------------VYNATWNP  159 (317)
Q Consensus       148 -----------------------------------~~~~---------------------------------v~~~~~~~  159 (317)
                                                         |...                                 |.+++| +
T Consensus       303 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~  381 (615)
T 1pgu_A          303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S  381 (615)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-C
T ss_pred             EEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-C
Confidence                                               2222                                 333333 1


Q ss_pred             CCCCeEEEE-----------------------------------------------------------------------
Q 021121          160 RHSDVFCSA-----------------------------------------------------------------------  168 (317)
Q Consensus       160 ~~~~~l~~~-----------------------------------------------------------------------  168 (317)
                      + +..++++                                                                       
T Consensus       382 ~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  460 (615)
T 1pgu_A          382 K-AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA  460 (615)
T ss_dssp             S-TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred             C-CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEE
Confidence            1 2233333                                                                       


Q ss_pred             --eC-CCeEEEEeCCCCCce-eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEE
Q 021121          169 --SG-DCTLRIWDVREMGST-MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVK  243 (317)
Q Consensus       169 --~~-dg~i~i~d~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~  243 (317)
                        +. |+.|++||+.+++.. ..+..|...|.+++|+| ++++|++++.|+.|++||+.+.+. +..+.+ |...|++++
T Consensus       461 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~  538 (615)
T 1pgu_A          461 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAIS  538 (615)
T ss_dssp             EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEE
T ss_pred             EeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEE
Confidence              33 444444444443322 44566888999999999 999999999999999999998664 666666 999999999


Q ss_pred             ecC----------CCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          244 FSP----------HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       244 ~~~----------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |+|          +++ +|++++.||.|++||+.++...+..+.+|...|++++|+|+ +. |++++.||.|++|++..
T Consensus       539 ~sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          539 WKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-ST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ECCCC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET-TE-EEEEETTSCEEEEEEC-
T ss_pred             EcCccccccccccCCC-EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC-CC-eEEecCCceEEEEeeec
Confidence            999          888 79999999999999999885577888999999999999999 66 99999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-40  Score=300.02  Aligned_cols=293  Identities=12%  Similarity=0.086  Sum_probs=216.6

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCccee--------eeeecCCCCeeEEEecCCCCCe
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTE--------LVAFDTADGVYDLAWSESHDSL   75 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~   75 (317)
                      +.+...|++++|+|  ++.++++++.      ||.|++||+.........        .....|...|.+++|+|++...
T Consensus        95 ~~~~~~V~~v~~sp--~g~~l~sgs~------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           95 VFVPGKITSIDTDA--SLDWMLIGLQ------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             EECSSCEEEEECCT--TCSEEEEEET------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             EcCCCCEEEEEECC--CCCEEEEEcC------CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            45667899999999  5666666665      999999999865421000        1113578899999999975568


Q ss_pred             EEEEEcCCeEEEEEeCCCCCCCCceeecc------------------CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           76 LIAAVADGSVKIYDTALPPTANPIRSLHE------------------HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      +++|+.||.| +||++..   +....+..                  |...|.+++|+|++. +|++++.||.|++||++
T Consensus       167 l~~g~~dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEECSSCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred             EEEEeCCCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence            9999999999 9999865   44444443                  357899999999988 99999999999999999


Q ss_pred             CCceeEE--ee---c-------------cccceEEEEEec----CCCCeEEEEeC-------------------------
Q 021121          138 RPTSVRT--FK---E-------------HAYCVYNATWNP----RHSDVFCSASG-------------------------  170 (317)
Q Consensus       138 ~~~~~~~--~~---~-------------~~~~v~~~~~~~----~~~~~l~~~~~-------------------------  170 (317)
                      +++.+..  +.   .             +..+|.+++|++    +++.++++|+.                         
T Consensus       242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~  321 (902)
T 2oaj_A          242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY  321 (902)
T ss_dssp             TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred             CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence            8877653  21   1             244688888854    22234555533                         


Q ss_pred             ---------------------------------------------------CCeEEEEeCCCCCceee-------e----
Q 021121          171 ---------------------------------------------------DCTLRIWDVREMGSTMI-------I----  188 (317)
Q Consensus       171 ---------------------------------------------------dg~i~i~d~~~~~~~~~-------~----  188 (317)
                                                                         ||.|++||+.++.....       +    
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~  401 (902)
T 2oaj_A          322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR  401 (902)
T ss_dssp             HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred             hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence                                                               34455555443321111       1    


Q ss_pred             ------------------------------ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc---EEE--Ee
Q 021121          189 ------------------------------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP---IAV--LN  233 (317)
Q Consensus       189 ------------------------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~--~~  233 (317)
                                                    .+|...+.+++|+| ++++|++|+.|++|++||+.++...   ...  +.
T Consensus       402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence                                          11222333455677 8999999999999999999876421   111  11


Q ss_pred             -----cCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc--------------------------------------
Q 021121          234 -----GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--------------------------------------  270 (317)
Q Consensus       234 -----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~--------------------------------------  270 (317)
                           +|...|++++|+|+++ +||+|+.||+|+|||+.+++                                      
T Consensus       481 ~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (902)
T 2oaj_A          481 RTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT  559 (902)
T ss_dssp             HHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT
T ss_pred             hhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC
Confidence                 7889999999999999 79999999999999998762                                      


Q ss_pred             ------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          271 ------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       271 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                            .++..+.+|.+.|++++|+|+ + +||+|+.|++|++||+...
T Consensus       560 ~~~~g~~~~~~l~~h~~~V~svafSpd-G-~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          560 GVRQGFMPSTAVHANKGKTSAINNSNI-G-FVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             TCSEEEEEEEEECCCSCSEEEEEECBT-S-EEEEEETTSEEEEEETTTT
T ss_pred             CCCCccceeEEEEcCCCcEEEEEecCC-c-EEEEEeCCCcEEEEECCCC
Confidence                  135667789999999999999 6 9999999999999998654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.6e-39  Score=284.00  Aligned_cols=288  Identities=11%  Similarity=0.147  Sum_probs=242.6

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-ceeeeeecCCCC-eeEEEecC--CCCCeEEEEE
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LTELVAFDTADG-VYDLAWSE--SHDSLLIAAV   80 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~-v~~~~~~~--~~~~~l~~~~   80 (317)
                      .+...|.+++|+|  ++.++++++       ++.|++|++...... ........|... |++++|+|  ++ .+|++|+
T Consensus        16 ~~~~~v~~~~~sp--dg~~l~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~   85 (615)
T 1pgu_A           16 TQRNFTTHLSYDP--TTNAIAYPC-------GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGD   85 (615)
T ss_dssp             CCTTCCCCCEEET--TTTEEEEEE-------TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEE
T ss_pred             CccCceeEEEECC--CCCEEEEec-------CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-CEEEEec
Confidence            3667899999999  566666665       679999999865211 112233368889 99999999  88 6999999


Q ss_pred             cCCeEEEEEeCCCC-----CCCCceeeccCCcceEEEEEecCCCCEEEEEcCC----CEEEEEEcCCCceeEEeeccccc
Q 021121           81 ADGSVKIYDTALPP-----TANPIRSLHEHTREVHSADYNPTRRDSFITSSWD----DTVKLWTVDRPTSVRTFKEHAYC  151 (317)
Q Consensus        81 ~dg~i~v~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~  151 (317)
                      .||.|++||+..+.     .......+..|...|.+++|+|+++ ++++++.+    +.|++||  .++.+..+..|...
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~  162 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR  162 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence            99999999996321     1245566778999999999999998 88888877    7888888  56788889999999


Q ss_pred             eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc---ceEEEEecCCC-CcEEEEEecCCcEEEEEccCCCc
Q 021121          152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF---EILACDWNKYD-DCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~i~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      |.+++|+|++..++++++.|+.|++||+++++.+..+..|..   .|.+++|+| + ++++++++.|+.|++||+++++.
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCE
Confidence            999999999545899999999999999999999999999998   999999999 7 99999999999999999998764


Q ss_pred             cEEEE-e---cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc----cceeEeEEEEeccCCeEEEe
Q 021121          228 PIAVL-N---GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH----TEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       228 ~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~  299 (317)
                       +..+ .   .|...|.+++|+ +++ +|++++.|+.|++||+++++ ....+..+    ...+.++.|. + +.+++++
T Consensus       242 -~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~  315 (615)
T 1pgu_A          242 -LKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVAT-G-NGRIISL  315 (615)
T ss_dssp             -EEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEE-E-TTEEEEE
T ss_pred             -eEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcccCceeEEEeC-C-CCeEEEE
Confidence             6666 5   899999999999 887 79999999999999999876 44555555    4678888886 4 7899999


Q ss_pred             ecCCcEEEEecCC
Q 021121          300 GWDELVYVWQQGM  312 (317)
Q Consensus       300 ~~dg~i~~w~~~~  312 (317)
                      +.||.|++||+..
T Consensus       316 ~~~g~i~~~d~~~  328 (615)
T 1pgu_A          316 SLDGTLNFYELGH  328 (615)
T ss_dssp             ETTSCEEEEETTE
T ss_pred             ECCCCEEEEECCC
Confidence            9999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-40  Score=300.67  Aligned_cols=233  Identities=13%  Similarity=0.197  Sum_probs=188.2

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      +.|...|++++|+|  ++.++++++.      ||.|+||+.....    ......|...|.+++|+| + .+|++++.|+
T Consensus        14 ~gh~~~V~~lafsp--dg~~lAsgs~------Dg~I~lw~~~~~~----~~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~   79 (902)
T 2oaj_A           14 YGMSSKPIAAAFDF--TQNLLAIATV------TGEVHIYGQQQVE----VVIKLEDRSAIKEMRFVK-G-IYLVVINAKD   79 (902)
T ss_dssp             EECSSCEEEEEEET--TTTEEEEEET------TSEEEEECSTTCE----EEEECSSCCCEEEEEEET-T-TEEEEEETTC
T ss_pred             cCCCCCcEEEEECC--CCCEEEEEeC------CCEEEEEeCCCcE----EEEEcCCCCCEEEEEEcC-C-CEEEEEECcC
Confidence            45788999999999  5777777775      9999999976542    333446788999999999 6 4999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee-----------EEeeccccce
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-----------RTFKEHAYCV  152 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~~~~~~~~v  152 (317)
                      .|++||+..+   +.+..+. |...|++++|+|++. ++++|+.||.|++||+++++..           ..+.+|.++|
T Consensus        80 ~v~lWd~~~~---~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V  154 (902)
T 2oaj_A           80 TVYVLSLYSQ---KVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI  154 (902)
T ss_dssp             EEEEEETTTC---SEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred             eEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence            9999999876   5555554 678999999999998 9999999999999999987653           2235688899


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC------------------ccceEEEEecCCCCcEEEEEecC
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH------------------EFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      .+++|+|++...+++++.||.| +||+++++.+..+..|                  ...|.+++|+| ++++|++++.|
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~D  232 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHED  232 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETT
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECC
Confidence            9999999756889999999999 9999998887777654                  46799999999 89999999999


Q ss_pred             CcEEEEEccCCCccEEE--E---ec-------------CCCceeEEEec----CCCCeeEEeeecC
Q 021121          215 KSIKIWDVRNYRVPIAV--L---NG-------------HGYAVRKVKFS----PHRRNLLASCSYD  258 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~~~~~~l~~~~~d  258 (317)
                      +.|++||+++++. +..  +   ..             |..+|++++|+    |++..+|++|+.|
T Consensus       233 g~i~lWd~~~g~~-~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          233 NSLVFWDANSGHM-IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             CCEEEEETTTCCE-EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CeEEEEECCCCcE-EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            9999999988653 332  1   11             34578999995    4433456666543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.6e-38  Score=268.57  Aligned_cols=276  Identities=19%  Similarity=0.322  Sum_probs=236.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|++   +.+++++.       ||.|++||+.....   ......|...|.+++|++   ..+++|+.||.|
T Consensus       158 h~~~v~~~~~~~---~~l~s~~~-------dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i  221 (445)
T 2ovr_B          158 HTGGVWSSQMRD---NIIISGST-------DRTLKVWNAETGEC---IHTLYGHTSTVRCMHLHE---KRVVSGSRDATL  221 (445)
T ss_dssp             CSSCEEEEEEET---TEEEEEET-------TSCEEEEETTTTEE---EEEECCCSSCEEEEEEET---TEEEEEETTSEE
T ss_pred             CCCCEEEEEecC---CEEEEEeC-------CCeEEEEECCcCcE---EEEECCCCCcEEEEEecC---CEEEEEeCCCEE
Confidence            678899999986   44444444       99999999987642   122236888999999963   479999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||+..+   +....+..|...|.+++|  ++. ++++++.||.|++||+++++.+..+..|...+.++.|  + +..+
T Consensus       222 ~~wd~~~~---~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~-~~~l  292 (445)
T 2ovr_B          222 RVWDIETG---QCLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D-GIHV  292 (445)
T ss_dssp             EEEESSSC---CEEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C-SSEE
T ss_pred             EEEECCCC---cEEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C-CCEE
Confidence            99999876   677788899999999999  455 8999999999999999999999999999999999999  4 7899


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---CCCceeEE
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---HGYAVRKV  242 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~v~~~  242 (317)
                      ++++.||.|++||+++++.+..+..|...+.++.++   ++++++++.||.|++||+++++ ++..+..   |...|+++
T Consensus       293 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~  368 (445)
T 2ovr_B          293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCL  368 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEE
Confidence            999999999999999999999999999999988875   4689999999999999998866 4666665   88899999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeee-----ecccceeEeEEEEeccCCeEEEeecCCc----EEEEecCCC
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY-----DHHTEFAVGVDMSVLVEGLLASTGWDEL----VYVWQQGMD  313 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~----i~~w~~~~~  313 (317)
                      +|++  + +|++++.||.|++||+.+++ .+..+     ..|.+.|.+++|+|+ +.++++|+.||.    |.+||++.+
T Consensus       369 ~~~~--~-~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~-~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          369 QFNK--N-FVITSSDDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EECS--S-EEEEEETTSEEEEEETTTCC-EEEEEEECTTGGGTCEEEEEEECSS-EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EECC--C-EEEEEeCCCeEEEEECCCCc-eeeeeeccccCCCCceEEEEEecCC-EEEEEEcccCCCCccEEEEEECCCC
Confidence            9964  4 79999999999999999887 44444     478889999999998 789999999998    999999987


Q ss_pred             CC
Q 021121          314 PR  315 (317)
Q Consensus       314 ~~  315 (317)
                      ++
T Consensus       444 ~~  445 (445)
T 2ovr_B          444 MK  445 (445)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9e-39  Score=263.02  Aligned_cols=253  Identities=15%  Similarity=0.255  Sum_probs=212.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-ecCCCCeeEEEecC--CCCCeEEEEEcC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-FDTADGVYDLAWSE--SHDSLLIAAVAD   82 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~d   82 (317)
                      |...|++++|+|  ++.++++++.      ||.|++||+............ ..|...|.+++|+|  ++ .+|++|+.|
T Consensus        10 H~~~v~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~d   80 (351)
T 3f3f_A           10 HDDLVHDVVYDF--YGRHVATCSS------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYD   80 (351)
T ss_dssp             CSSCEEEEEECS--SSSEEEEEET------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred             cccceeEEEEcC--CCCEEEEeeC------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCC
Confidence            788999999999  5666666665      999999999876543333333 36889999999999  45 699999999


Q ss_pred             CeEEEEEeCCCCCC------CCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEEEcCCCceeEEee--------
Q 021121           83 GSVKIYDTALPPTA------NPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLWTVDRPTSVRTFK--------  146 (317)
Q Consensus        83 g~i~v~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------  146 (317)
                      |.|++||+..+...      +....+..|...|.+++|+|+  +. ++++++.||.|++||+++++.+..+.        
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence            99999999865221      335667789999999999999  77 99999999999999999886554432        


Q ss_pred             -----ccccceEEEEEecC--CCCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCC----cEEEEEec
Q 021121          147 -----EHAYCVYNATWNPR--HSDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDD----CLIASASV  213 (317)
Q Consensus       147 -----~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~  213 (317)
                           .+...+.+++|+|+  .+.++++++.++.+.+|+...++.  ...+..|...|.+++|+| ++    ++|++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCK  238 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEET
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcC
Confidence                 46778999999996  478999999999998888877664  566778999999999999 76    89999999


Q ss_pred             CCcEEEEEccCCC---------------------------------------------ccEEEEecCCCceeEEEecCCC
Q 021121          214 DKSIKIWDVRNYR---------------------------------------------VPIAVLNGHGYAVRKVKFSPHR  248 (317)
Q Consensus       214 d~~i~v~d~~~~~---------------------------------------------~~~~~~~~~~~~v~~~~~~~~~  248 (317)
                      ||.|++||++...                                             .++..+.+|...|++++|+|++
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            9999999998742                                             3456677899999999999999


Q ss_pred             CeeEEeeecCCeEEEEeccccc
Q 021121          249 RNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       249 ~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      + +|++++.||.|++||+.+++
T Consensus       319 ~-~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          319 T-ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             C-CEEEEETTSCEEEEEECTTS
T ss_pred             C-EEEEecCCCcEEEEecCcCc
Confidence            8 79999999999999998875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-40  Score=277.65  Aligned_cols=244  Identities=16%  Similarity=0.196  Sum_probs=201.7

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      +.++|++++|+|++ .+|++|+.|+.|++|++..+ ..+....+.+|...|.+++|+|+++ +|++++.||.|++||+.+
T Consensus        10 ~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C           10 LPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             CSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEEEC----
T ss_pred             CCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCC
Confidence            56789999999998 69999999999999999853 1145667788999999999999987 999999999999999998


Q ss_pred             Cc---eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC---ceeeecc-CccceEEEEecCCCCcEEEEE
Q 021121          139 PT---SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG---STMIIPA-HEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       139 ~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      ++   ....+..|...|.+++|+|+ +++|++++.|+.|++||+++++   ....+.. |...|.+++|+| ++++|+++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~  164 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAG  164 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEE
Confidence            77   66677789999999999998 8899999999999999999876   3667776 899999999999 99999999


Q ss_pred             ecCCcEEEEEccCCC-----------------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc---
Q 021121          212 SVDKSIKIWDVRNYR-----------------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA---  271 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~---  271 (317)
                      +.|+.|++||++...                 .++..+ .|...|++++|+|+++ +|++++.||.|++||+.+++.   
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcce
Confidence            999999999986321                 123344 8999999999999998 799999999999999998874   


Q ss_pred             eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          272 LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      .+..+..|...|.+++|+|+ +.+|++++.++.+ +|+..
T Consensus       243 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          243 ALITVKLSQLPLRSLLWANE-SAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECCCEECSSSCEEEEEEEET-TEEEEEESSSSEE-EECCC
T ss_pred             eeEeecCCCCceEEEEEcCC-CCEEEEEcCCcEE-EEEeC
Confidence            16778899999999999998 7888888766655 77765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.9e-39  Score=266.46  Aligned_cols=246  Identities=20%  Similarity=0.254  Sum_probs=213.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .|.++|++++|+|++ .+|++|+.|+.|++||+... .......+..|...|.+++|+|++. +|++++.||.|++||++
T Consensus         6 ~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            6 FLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             SCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEE
T ss_pred             ccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEEEEECC
Confidence            377899999999998 69999999999999999865 1126777889999999999999988 99999999999999998


Q ss_pred             CCceeEEe--eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc---e-eeeccCccceEEEEecCCCCcEEEEE
Q 021121          138 RPTSVRTF--KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS---T-MIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       138 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      +++....+  ..|...|.+++|+|+ ++++++++.|+.|++||++..+.   . .....|...+.+++|+| ++++++++
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  160 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAG  160 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEE
Confidence            88654443  568889999999998 89999999999999999998764   2 23356788999999999 99999999


Q ss_pred             ecCCcEEEEEccC-----------------CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee
Q 021121          212 SVDKSIKIWDVRN-----------------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG  274 (317)
Q Consensus       212 ~~d~~i~v~d~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  274 (317)
                      +.|+.|++||++.                 ...++..+..|...|.+++|+|+++ +|++++.|+.|++||+++++ .+.
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~  238 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKM-AVA  238 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTT-EEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCc-eeE
Confidence            9999999999641                 1235677778999999999999998 79999999999999999886 667


Q ss_pred             eeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          275 RYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       275 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .+..|...|.+++|+|+ +.+|+++ .|+.|++|++..
T Consensus       239 ~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          239 TLASETLPLLAVTFITE-SSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEECSSCCEEEEEEEET-TEEEEEE-TTSSCEEEEEET
T ss_pred             EEccCCCCeEEEEEecC-CCEEEEE-eCCeEEEEEccC
Confidence            88899999999999998 6677766 899999999976

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=264.14  Aligned_cols=285  Identities=16%  Similarity=0.190  Sum_probs=227.2

Q ss_pred             cCcceeEEEEecCC-CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFY-ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~-~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |...|++++|+|+. ++.++++++.      ||.|++||+....... ......|...|.+++|+|++ .+|++++.||.
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~------dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~  109 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSW------ANDVRCWEVQDSGQTI-PKAQQMHTGPVLDVCWSDDG-SKVFTASCDKT  109 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEET------TSEEEEEEECTTSCEE-EEEEEECSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             CCCceEEEEEcCCCCCceEEEEECC------CCcEEEEEcCCCCcee-EEEeccccCCEEEEEECcCC-CEEEEEcCCCc
Confidence            77899999999942 0467777665      9999999998743222 23334789999999999997 69999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEE--ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADY--NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      |++||+...   .. ..+..|...|.+++|  +|++. ++++++.||.|++||+++++.+..+..+. .+.++.+.   .
T Consensus       110 v~iwd~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~---~  180 (368)
T 3mmy_A          110 AKMWDLSSN---QA-IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI---Y  180 (368)
T ss_dssp             EEEEETTTT---EE-EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE---T
T ss_pred             EEEEEcCCC---Cc-eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec---C
Confidence            999999865   33 335679999999999  88877 89999999999999999999988888654 57777776   4


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCC----cEEEEEecCCcEEEEEccCCC--ccEEEEec
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDD----CLIASASVDKSIKIWDVRNYR--VPIAVLNG  234 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~  234 (317)
                      ..+++++.++.+++||++.........  .+.....++.+.+ ..    ..+++++.|+.|++||++...  .....+..
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence            478889999999999998765433222  2233445555544 33    339999999999999998763  34566677


Q ss_pred             CCC------------ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121          235 HGY------------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       235 ~~~------------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      |..            .|++++|+|+++ +|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~-g~~l~~~s~d  336 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDART-KLKTSEQLDQPISACCFNHN-GNIFAYASSY  336 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE-EEEECCCCSSCEEEEEECTT-SSCEEEEECC
T ss_pred             eecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCc-EEEEecCCCCCceEEEECCC-CCeEEEEecc
Confidence            765            799999999998 79999999999999999876 56788899999999999999 8899999988


Q ss_pred             CcEEEEecC
Q 021121          303 ELVYVWQQG  311 (317)
Q Consensus       303 g~i~~w~~~  311 (317)
                      +..+.|++-
T Consensus       337 ~~~~~~~~~  345 (368)
T 3mmy_A          337 DWSKGHEFY  345 (368)
T ss_dssp             CSTTCGGGC
T ss_pred             ccccccccc
Confidence            866666543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9e-39  Score=286.47  Aligned_cols=248  Identities=23%  Similarity=0.316  Sum_probs=212.6

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ..|.+.|++++|+|++..+|++|+.|++|++|++......  .....+.+|...|.+++|+|+++ +|++|+.||.|++|
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDGELRLW  457 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEE
Confidence            3799999999999987779999999999999999764221  23456789999999999999998 99999999999999


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecCCCC--cEEE
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKYDD--CLIA  209 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~--~~l~  209 (317)
                      |+.+++....+.+|...|.+++|+|+ +.+|++++.|++|++||..........   .+|...|.+++|+| ++  ..++
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~  535 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIV  535 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEE
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEE
Confidence            99999999999999999999999999 889999999999999998654332222   36788899999999 54  6899


Q ss_pred             EEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEE
Q 021121          210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  289 (317)
                      +++.|+.|++||+++.+ ....+.+|...|++++|+|+++ +|++++.||.|++||+++++. +..+.. ...|.+++|+
T Consensus       536 s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~s  611 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKK-LYSLEA-NSVIHALCFS  611 (694)
T ss_dssp             EEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEE-EECCBC-SSCEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce-EEEecC-CCcEEEEEEc
Confidence            99999999999999865 4778889999999999999998 799999999999999998873 344443 4679999999


Q ss_pred             eccCCeEEEeecCCcEEEEecCCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      |+ +.+|+++ .|+.|++||+...
T Consensus       612 p~-~~~l~~~-~~~~i~iwd~~~~  633 (694)
T 3dm0_A          612 PN-RYWLCAA-TEHGIKIWDLESK  633 (694)
T ss_dssp             SS-SSEEEEE-ETTEEEEEETTTT
T ss_pred             CC-CcEEEEE-cCCCEEEEECCCC
Confidence            97 6666655 4667999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.7e-38  Score=267.88  Aligned_cols=280  Identities=18%  Similarity=0.240  Sum_probs=231.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecC--CCCCeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE--SHDSLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg   83 (317)
                      |...|.+++|+|  ++.+ ++++.      ||.|++||+.....   ......|...|.+++|++  ++ .++++|+.||
T Consensus       161 h~~~V~~l~~~~--~~~l-~s~s~------dg~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~  227 (464)
T 3v7d_B          161 HDGGVWALKYAH--GGIL-VSGST------DRTVRVWDIKKGCC---THVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDN  227 (464)
T ss_dssp             CSSCEEEEEECS--TTEE-EEEET------TSCEEEEETTTTEE---EEEECCCSSCEEEEEEEESSSC-EEEEEEETTS
T ss_pred             CCcCEEEEEEcC--CCEE-EEEeC------CCCEEEEECCCCcE---EEEECCCCCccEEEEEecCCCC-CEEEEEcCCC
Confidence            788999999999  4544 44444      99999999987641   122236889999999995  54 6999999999


Q ss_pred             eEEEEEeCCCCCCC--------------------CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121           84 SVKIYDTALPPTAN--------------------PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        84 ~i~v~~~~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  143 (317)
                      .|++||+.......                    ....+.+|...+.++  ++++. ++++++.||.|++||+.+++.+.
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEE
Confidence            99999998653221                    144567888888887  45566 99999999999999999999999


Q ss_pred             EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      .+..|...|.+++|+|+ ++.+++++.||.|++||+++++.+..+..|...+.+++++   ++++++++.||.|++||++
T Consensus       305 ~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             EECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             EecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECC
Confidence            99999999999999998 8899999999999999999999999999999999999997   4689999999999999999


Q ss_pred             CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      +... .... .+...+..++|+|++. ++++++ ||.|++||+++++.+......|...|.+++|+.  +.++++++.||
T Consensus       381 ~~~~-~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g  454 (464)
T 3v7d_B          381 DYSR-KFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDG  454 (464)
T ss_dssp             TCCE-EEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET--TEEEEEEEETT
T ss_pred             CCce-eeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecC--CEEEEEEEeCC
Confidence            8664 2222 3666788899999998 688887 999999999998855445778899999999973  56777777888


Q ss_pred             cEEEEecC
Q 021121          304 LVYVWQQG  311 (317)
Q Consensus       304 ~i~~w~~~  311 (317)
                      .+.+|-++
T Consensus       455 ~~~i~~ld  462 (464)
T 3v7d_B          455 QSFLEILD  462 (464)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEee
Confidence            77666543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.3e-39  Score=264.45  Aligned_cols=251  Identities=14%  Similarity=0.246  Sum_probs=208.1

Q ss_pred             eeecCCCCeeEEEecCCCCCeEEEEEc---CCeEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCC--CCEEEEEcCC
Q 021121           55 VAFDTADGVYDLAWSESHDSLLIAAVA---DGSVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTR--RDSFITSSWD  128 (317)
Q Consensus        55 ~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~~l~~~~~d  128 (317)
                      ....|...|.+++|+|+++.++++|+.   ||.|++|++..+   +... ....|...|.+++|+|++  ..++++++.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            334699999999999998667777776   999999999865   3322 233689999999999983  2389999999


Q ss_pred             CEEEEEEcCCCc-eeEEeeccccceEEEEE------ecCCCCeEEEEeCCCeEEEEeCCCCC-ceeeeccCcc----ceE
Q 021121          129 DTVKLWTVDRPT-SVRTFKEHAYCVYNATW------NPRHSDVFCSASGDCTLRIWDVREMG-STMIIPAHEF----EIL  196 (317)
Q Consensus       129 g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~v~  196 (317)
                      |.|++||+.+++ .+..+..|...|.++.|      +|+ ++++++++.||.|++||+++++ ....+..+..    .+.
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            999999999988 88899999999999966      566 8899999999999999999886 6677765544    788


Q ss_pred             EEE----ecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecC---CCCeeEEeeecCCeEEEEecccc
Q 021121          197 ACD----WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP---HRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       197 ~i~----~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      +++    |+| +++++++++.|+.|++||+++.+.  .....|...|.+++|+|   ++. +|++++.||.|++||+++.
T Consensus       169 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          169 TVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             EEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEE
T ss_pred             EEEEEeccCC-CCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCC
Confidence            888    778 899999999999999999998663  44466888999999999   787 7999999999999999887


Q ss_pred             ccee----eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          270 DALV----GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       270 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +...    .....|...|++++|+|++..+|++++.||.|++||+...
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            6321    1234899999999999984348999999999999999754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.5e-39  Score=268.67  Aligned_cols=245  Identities=17%  Similarity=0.298  Sum_probs=214.2

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC---CCCceeeccCCcceEEEEEecC----C---CCEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT---ANPIRSLHEHTREVHSADYNPT----R---RDSFITSSW  127 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~----~---~~~l~~~~~  127 (317)
                      .|.+.|++++|+|   .+|++|+.||.|++|++...+.   ......+..|...|.+++|+|+    +   . +|++++.
T Consensus        14 ~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~   89 (397)
T 1sq9_A           14 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVATTSF   89 (397)
T ss_dssp             CSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEEEET
T ss_pred             hhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-EEEEEcC
Confidence            6899999999998   4999999999999999987621   1256777899999999999999    7   7 9999999


Q ss_pred             CCEEEEEEcCCCce-----eEEeecc-----ccceEEEEEe----cCCCCe-EEEEeCCCeEEEEeCCC------CCcee
Q 021121          128 DDTVKLWTVDRPTS-----VRTFKEH-----AYCVYNATWN----PRHSDV-FCSASGDCTLRIWDVRE------MGSTM  186 (317)
Q Consensus       128 dg~v~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~i~d~~~------~~~~~  186 (317)
                      ||.|++||+.+++.     ...+..|     ...|.+++|+    |+ +.+ +++++.||.|++||+++      ++.+.
T Consensus        90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  168 (397)
T 1sq9_A           90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHPFADESNSLTLN  168 (397)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCccccccccceee
Confidence            99999999998887     8888888     5899999999    88 788 99999999999999998      66665


Q ss_pred             -----ee-------ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec---C---CCceeEEEecCCC
Q 021121          187 -----II-------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG---H---GYAVRKVKFSPHR  248 (317)
Q Consensus       187 -----~~-------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~  248 (317)
                           .+       ..|...+.+++|+| ++ ++++++.|+.|++||+++.+ ++..+..   |   ...|.+++|+|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~  245 (397)
T 1sq9_A          169 WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQG  245 (397)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSST
T ss_pred             ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECCCC
Confidence                 66       44788899999999 88 99999999999999999865 4777887   8   9999999999999


Q ss_pred             CeeEEeeecC---CeEEEEecccccceeeeeec-------------ccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          249 RNLLASCSYD---MTVCLWDFMVEDALVGRYDH-------------HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       249 ~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      + +|++++.|   +.|++||+++++ .+..+..             |...|.+++|+|+ +.+|++++.||.|++||+..
T Consensus       246 ~-~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          246 S-LLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             T-EEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTT
T ss_pred             C-EEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCC
Confidence            8 79999999   999999999876 5567777             9999999999998 78999999999999999976


Q ss_pred             C
Q 021121          313 D  313 (317)
Q Consensus       313 ~  313 (317)
                      .
T Consensus       323 ~  323 (397)
T 1sq9_A          323 K  323 (397)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-38  Score=301.24  Aligned_cols=288  Identities=15%  Similarity=0.215  Sum_probs=244.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC-CCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH-DSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~   84 (317)
                      |...|.+++|+|  ++.++++++.      ||.|++||+.+... ..  ....|...|.+++|+|++ ..++++|+.||.
T Consensus       656 h~~~v~~~~~s~--~~~~l~s~~~------d~~v~vwd~~~~~~-~~--~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          656 HEDEVLCCAFSS--DDSYIATCSA------DKKVKIWDSATGKL-VH--TYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TSEEEEEETTTCCE-EE--EEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             CCCCEEEEEEec--CCCEEEEEeC------CCeEEEEECCCCce-EE--EEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            678999999999  5667777665      99999999987652 22  223688999999999953 358899999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-------------------
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-------------------  145 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------------  145 (317)
                      |++||+..+   .....+.+|...|.+++|+|++. ++++++.||.|++||+.+++....+                   
T Consensus       725 v~vwd~~~~---~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1249)
T 3sfz_A          725 LKLWDLNQK---ECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI  800 (1249)
T ss_dssp             EEEEETTSS---SEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred             EEEEECCCc---chhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence            999999876   67778889999999999999998 9999999999999999776443322                   


Q ss_pred             ------------------------------------eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec
Q 021121          146 ------------------------------------KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP  189 (317)
Q Consensus       146 ------------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (317)
                                                          ..|...+.+++|+|+ +.++++++.||.|++||+.++.....+.
T Consensus       801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~  879 (1249)
T 3sfz_A          801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLKVADCR  879 (1249)
T ss_dssp             BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceeeecC
Confidence                                                156678899999998 8999999999999999999999999999


Q ss_pred             cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc----------------------------cEE--------EEe
Q 021121          190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV----------------------------PIA--------VLN  233 (317)
Q Consensus       190 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----------------------------~~~--------~~~  233 (317)
                      +|...|.+++|+| +++.+++++.|+.|++||+.+...                            ...        ...
T Consensus       880 ~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  958 (1249)
T 3sfz_A          880 GHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY  958 (1249)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred             CCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence            9999999999999 999999999999999999764210                            000        011


Q ss_pred             cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+...+.+++|+|+++ ++++|+.+|.|++||+.+++ ....+.+|...|.+++|+|+ +.+|++++.||.|++|++...
T Consensus       959 ~~~~~i~~~~~sp~g~-~l~~g~~~g~i~i~d~~~~~-~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A          959 LPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNR-VFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp             ECCSCEEEEEECTTSS-EEEEEETTSCCEEEETTTTS-CEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTT
T ss_pred             cccCcEEEEEEcCCCC-EEEEEcCCCCEEEEEcCCCc-eeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCC
Confidence            2345789999999998 79999999999999999876 56778899999999999999 889999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-37  Score=264.01  Aligned_cols=273  Identities=18%  Similarity=0.339  Sum_probs=231.0

Q ss_pred             cCcce-eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNG-YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v-~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |...+ .+++++    +.++++++.      ||.|++||+.+... .  .....|...|.+++|++   .++++|+.||.
T Consensus       117 h~~~v~~~~~~~----g~~l~sg~~------dg~i~vwd~~~~~~-~--~~~~~h~~~v~~~~~~~---~~l~s~~~dg~  180 (445)
T 2ovr_B          117 HDDHVITCLQFC----GNRIVSGSD------DNTLKVWSAVTGKC-L--RTLVGHTGGVWSSQMRD---NIIISGSTDRT  180 (445)
T ss_dssp             STTSCEEEEEEE----TTEEEEEET------TSCEEEEETTTCCE-E--EECCCCSSCEEEEEEET---TEEEEEETTSC
T ss_pred             cCCCcEEEEEEc----CCEEEEEEC------CCcEEEEECCCCcE-E--EEEcCCCCCEEEEEecC---CEEEEEeCCCe
Confidence            44444 444443    344555554      99999999987652 2  22236889999999983   49999999999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      |++||+.++   +....+.+|...|.++.|++  . .+++++.||.|++||+++++.+..+..|...+.+++|  + +..
T Consensus       181 i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~-~~~  251 (445)
T 2ovr_B          181 LKVWNAETG---ECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D-GRR  251 (445)
T ss_dssp             EEEEETTTT---EEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C-SSC
T ss_pred             EEEEECCcC---cEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C-CCE
Confidence            999999876   67788889999999999973  3 8999999999999999999999999999999999999  3 778


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      +++++.||.|++||+++++.+..+..|...+.++.|   ++.++++++.|+.|++||+++++ ++..+.+|...+.++.+
T Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCC-EEEEEcCCcccEEEEEE
Confidence            999999999999999999999999999999999998   56789999999999999999876 47888899999998888


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccccceeeeeec---ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH---HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +  +. ++++++.||.|++||+++++ ....+..   |...|.+++|+   +.+|++++.||.|++||+....
T Consensus       328 ~--~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          328 K--DN-ILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             E--TT-EEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCC
T ss_pred             e--CC-EEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCc
Confidence            5  44 79999999999999998876 4556655   88899999996   5799999999999999998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=258.34  Aligned_cols=251  Identities=18%  Similarity=0.273  Sum_probs=220.4

Q ss_pred             ceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCE
Q 021121           51 LTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT  130 (317)
Q Consensus        51 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  130 (317)
                      .+.....+|...|++++|+|++ .+|++|+.||.|++||+..+   +.+..+..|...|.+++|+|+++ +|++++.||.
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~   97 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTK-YCVTGSADYS   97 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTE
T ss_pred             cccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCC-EEEEEeCCCe
Confidence            4455556899999999999998 69999999999999999866   77788889999999999999988 9999999999


Q ss_pred             EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-----CeEEEEeCCCCCc-----------eeeeccCcc-
Q 021121          131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-----CTLRIWDVREMGS-----------TMIIPAHEF-  193 (317)
Q Consensus       131 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~-----------~~~~~~~~~-  193 (317)
                      |++||+.+++.+..+. +...+.+++|+|+ +.++++++.+     |.|++||++....           ...+..+.. 
T Consensus        98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEETTTCCEEEEEE-CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEEEECCCCcEEEEee-cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            9999999999988887 8889999999998 8899999998     9999999987643           333444555 


Q ss_pred             -ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce
Q 021121          194 -EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL  272 (317)
Q Consensus       194 -~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  272 (317)
                       .+.+++|+| +++++++++.||.|++||+++....+..+..|...|.+++|+|+++ +|++++.|+.|++||+++.+ .
T Consensus       176 ~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~  252 (369)
T 3zwl_B          176 DAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQ-V  252 (369)
T ss_dssp             CCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC-E
T ss_pred             cceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCc-e
Confidence             899999999 9999999999999999999985556888889999999999999998 79999999999999999876 4


Q ss_pred             eeeeecccceeEeEEEEeccCCeEEEeecCC--------------cEEEEecCCC
Q 021121          273 VGRYDHHTEFAVGVDMSVLVEGLLASTGWDE--------------LVYVWQQGMD  313 (317)
Q Consensus       273 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--------------~i~~w~~~~~  313 (317)
                      ...+. +...+..++|+|+ +.++++++.++              .+++|++...
T Consensus       253 ~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          253 LKKYE-TDCPLNTAVITPL-KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE  305 (369)
T ss_dssp             EEEEE-CSSCEEEEEECSS-SSEEEEEECCC-------------CEEEEEETTTC
T ss_pred             eeeec-CCCCceeEEecCC-CceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence            44444 6788999999999 78999998888              8999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-38  Score=266.32  Aligned_cols=285  Identities=11%  Similarity=0.075  Sum_probs=225.0

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee------------------------------
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF------------------------------   57 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~------------------------------   57 (317)
                      .++.+++|+|  ++.+++++.       ++.|++||+..+.. ...+..+                              
T Consensus         5 ~p~~~v~~s~--dg~~l~~~~-------~~~i~v~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (450)
T 2vdu_B            5 HPLQNLLTSR--DGSLVFAII-------KNCILSFKYQSPNH-WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK   74 (450)
T ss_dssp             CCCCEEEECS--SSSEEEEEE-------TTEEEEEEEETTTE-EEEEEEEECCC--------------------------
T ss_pred             ccEEEEEecC--CCCEEEEEe-------CCeEEEEECCCCCc-ceeeeecCCccccccccccccchhhcccccccccccc
Confidence            5688999999  456776665       67999999876651 0011110                              


Q ss_pred             -------------------------cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC--CCCCCCCceeec--cCCcc
Q 021121           58 -------------------------DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA--LPPTANPIRSLH--EHTRE  108 (317)
Q Consensus        58 -------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~--~~~~~  108 (317)
                                               .|...|.+++|+|++..++++|+.||.|++||+.  .+   ..+..+.  .|...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~  151 (450)
T 2vdu_B           75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK---NVLKLRKRFCFSKR  151 (450)
T ss_dssp             -------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---SCEEEEEEEECSSC
T ss_pred             ccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---ceeeeeecccCCCC
Confidence                                     2334699999999985335899999999999998  44   5555554  56789


Q ss_pred             eEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE----EeeccccceEEEEEecC--CCCeEEEEeCCCeEEEEeCCCC
Q 021121          109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR----TFKEHAYCVYNATWNPR--HSDVFCSASGDCTLRIWDVREM  182 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~  182 (317)
                      |.+++|+|++. +|++++.+|.|++|++.+++...    .+.+|...|.+++|+|+  ++.+|++++.|+.|++||++++
T Consensus       152 v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          152 PNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             EEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             ceEEEEcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            99999999998 99999999999999998876554    67789999999999997  3568999999999999999998


Q ss_pred             Cceee-eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-------------------------cCC
Q 021121          183 GSTMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-------------------------GHG  236 (317)
Q Consensus       183 ~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------------------------~~~  236 (317)
                      +.+.. +.+|...|.+++|+  ++++|++++.|+.|++||+++++. +..+.                         ...
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             ceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccce
Confidence            88777 55899999999999  889999999999999999998764 45544                         223


Q ss_pred             CceeEEEecCCCCeeEEeee-cCCeEEEEec--cccc--ceeeeeecccceeEeEEEEeccCCeEEEeec-------CCc
Q 021121          237 YAVRKVKFSPHRRNLLASCS-YDMTVCLWDF--MVED--ALVGRYDHHTEFAVGVDMSVLVEGLLASTGW-------DEL  304 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------dg~  304 (317)
                      ..|.+++|+|+++ +|++++ .++.|++|++  .++.  ..+..+..| ..|.+++|+|+  .++++.+.       +..
T Consensus       308 ~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~--~~~v~~~~~~~~~~~~~~  383 (450)
T 2vdu_B          308 FAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND--EFQVTLDNKESSGVQKNF  383 (450)
T ss_dssp             CCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT--EEEEEECCTTCCSSCCCS
T ss_pred             EEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC--cEEEEEecccCCCCCCcc
Confidence            5789999999998 577777 8999999999  4431  345666777 78999999994  35555432       566


Q ss_pred             EEEEecCCC
Q 021121          305 VYVWQQGMD  313 (317)
Q Consensus       305 i~~w~~~~~  313 (317)
                      |.+|.+..+
T Consensus       384 i~v~~~~~~  392 (450)
T 2vdu_B          384 AKFIEYNLN  392 (450)
T ss_dssp             EEEEEEETT
T ss_pred             eEEEEEEcC
Confidence            899988654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-37  Score=255.89  Aligned_cols=249  Identities=20%  Similarity=0.291  Sum_probs=213.5

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      .+|.+.|++++|+|+++.+|++|+.|++|++||+...+..  .+...+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~  113 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLW  113 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC-EEEEEcccccceEE
Confidence            3799999999999986679999999999999999865322  34556789999999999999998 99999999999999


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce-eeeccCccceEEEEecCCC-CcEEEEEe
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST-MIIPAHEFEILACDWNKYD-DCLIASAS  212 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~i~~~~~~-~~~l~~~~  212 (317)
                      +............+...+....++++ +..+++++.|+.+++||+...... .....|...+..++|++.. ..++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          114 DLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             eecccceeeeecCCCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            99999888888888889999999998 889999999999999998765433 3445788899999998732 45788999


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      .|+.|++||+++.+ ....+.+|...|++++|+|+++ +|++|+.|+.|++||+++.+ .+..+.. ...|..++|+|+ 
T Consensus       193 ~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~~~~-  267 (340)
T 4aow_A          193 WDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGK-HLYTLDG-GDIINALCFSPN-  267 (340)
T ss_dssp             TTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE-EEEEEEC-SSCEEEEEECSS-
T ss_pred             CCCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCc-eeeeecC-CceEEeeecCCC-
Confidence            99999999999866 4778889999999999999998 79999999999999999876 4445554 457999999996 


Q ss_pred             CCeEEEeecCCcEEEEecCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       ..+++++.|+.|++||+...
T Consensus       268 -~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          268 -RYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             -SSEEEEEETTEEEEEETTTT
T ss_pred             -CceeeccCCCEEEEEECCCC
Confidence             46677778999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.5e-38  Score=266.63  Aligned_cols=259  Identities=18%  Similarity=0.357  Sum_probs=215.0

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCC-------CCcceeeeeecCCCCeeEEEecCCCCCeE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPA-------APALTELVAFDTADGVYDLAWSESHDSLL   76 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l   76 (317)
                      +.|...|.+++|+|+ ++.++++++.      +|.|++|++...       ...........|...|.+++|+|++..+|
T Consensus       125 ~~h~~~v~~l~~~p~-~~~~lat~~~------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          125 INHEGEVNRARYMPQ-NACVIATKTP------SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             EEESSCCSEEEEETT-EEEEEEEECS------SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred             EcCCCcEEEEEECCC-CCcEEEEECC------CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence            458889999999994 2556666665      899999999762       10111223337888999999999986699


Q ss_pred             EEEEcCCeEEEEEeCCCCCC----CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC---ceeEEeeccc
Q 021121           77 IAAVADGSVKIYDTALPPTA----NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP---TSVRTFKEHA  149 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~  149 (317)
                      ++|+.||.|++|++......    .....+..|...|.+++|+|++..+|++++.||.|++||++++   +.+..+..|.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            99999999999999864221    1245667899999999999966669999999999999999987   5777888899


Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCC-CCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC--
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVRE-MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--  226 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~--  226 (317)
                      ..|++++|+|++..++++|+.||.|++||+++ ..++..+..|...|.+++|+|....+|++++.|+.|++||++...  
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            99999999999666899999999999999998 466788888999999999999444689999999999999998732  


Q ss_pred             -----------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          227 -----------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       227 -----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                                 ..+..+.+|...|++++|+|+++.+|++++.||.|++|++...
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                       3466677899999999999999867999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-38  Score=265.27  Aligned_cols=263  Identities=18%  Similarity=0.215  Sum_probs=213.8

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEe----CCCCCC---CCceeecc------
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDT----ALPPTA---NPIRSLHE------  104 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~----~~~~~~---~~~~~~~~------  104 (317)
                      .+.+|+++..   ...+....|...|++++|+|++..+|++|+.||.|++|++    ..+...   .....+..      
T Consensus        26 ~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (425)
T 1r5m_A           26 IDSSDDLDGF---VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA  102 (425)
T ss_dssp             --------CC---CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred             ccccccchhh---hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence            4567776544   3445555677899999999998449999999999999999    655210   02222222      


Q ss_pred             ----CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          105 ----HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       105 ----~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                          |...|.+++|+|++. +|++++.||.|++|| .+++.+..+..|...|.+++|+|+ ++++++++.||.|++||++
T Consensus       103 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          103 SSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             -----CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETT
T ss_pred             cccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECC
Confidence                678999999999988 999999999999999 677888889999999999999998 8899999999999999997


Q ss_pred             CCCcee--------------------------------------------------------eeccCccceEEEEecCCC
Q 021121          181 EMGSTM--------------------------------------------------------IIPAHEFEILACDWNKYD  204 (317)
Q Consensus       181 ~~~~~~--------------------------------------------------------~~~~~~~~v~~i~~~~~~  204 (317)
                      +++.+.                                                        .+..|...+.+++|+| +
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~  258 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-T  258 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-T
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-C
Confidence            654332                                                        2335677899999999 8


Q ss_pred             CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV  284 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~  284 (317)
                      +++|++++.|+.|++||+++.+ ....+..|...|.+++|+|++  ++++++.|+.|++||+++++ .+..+..|...|.
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~  334 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIF  334 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc-EeEecccCCccEE
Confidence            9999999999999999999865 467778899999999999998  69999999999999998876 6677888999999


Q ss_pred             eEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          285 GVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       285 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +++|+|+ +.+|++++.||.|++|++..
T Consensus       335 ~~~~s~~-~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          335 AGRISQD-GQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             EEEECTT-SSEEEEEETTSCEEEEECHH
T ss_pred             EEEEcCC-CCEEEEEECCCeEEEEECCC
Confidence            9999998 88999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.3e-38  Score=287.82  Aligned_cols=248  Identities=17%  Similarity=0.334  Sum_probs=224.5

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      ..|.+.|.+++|+|++ .+|++|+.+|.|++||+.++   .....+..|..+|.+++|+|+++ +|++++.||.|++||+
T Consensus        10 ~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             EEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEET
T ss_pred             ecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCCeEEEEEC
Confidence            3788999999999998 69999999999999999766   67778889999999999999998 9999999999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      .+++.+..+..|...|.+++|+|+ +..+++++.||.|++||++++ .....+..|...+.+++|+|.+++.+++++.||
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           85 NTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCcEEEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            999999999999999999999999 889999999999999999987 566777889999999999996788999999999


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecC--CCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccC
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP--HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE  293 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  293 (317)
                      .|++||+++..........+...+.+++|+|  +++ +|++++.||.|++||+.+++ ....+.+|...|.+++|+|+ +
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~  240 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPT-L  240 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSS-S
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCC-C
Confidence            9999999887654444445558999999999  887 79999999999999998876 56788889999999999998 7


Q ss_pred             CeEEEeecCCcEEEEecCCC
Q 021121          294 GLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       294 ~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+|++++.||.|++||+...
T Consensus       241 ~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          241 PIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             SEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEEECCCC
Confidence            89999999999999999764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-38  Score=261.33  Aligned_cols=249  Identities=18%  Similarity=0.272  Sum_probs=207.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee-eeecCCCCeeEEEecCC--CCCeEEEEEcC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL-VAFDTADGVYDLAWSES--HDSLLIAAVAD   82 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~--~~~~l~~~~~d   82 (317)
                      |...|++++|+|  ++.++++++.      ||.|++|++....  .... ....|...|++++|+|+  + .+|++|+.|
T Consensus        10 h~~~v~~~~~s~--~~~~l~~~~~------dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d   78 (379)
T 3jrp_A           10 HNELIHDAVLDY--YGKRLATCSS------DKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD   78 (379)
T ss_dssp             CCCCEEEEEECS--SSSEEEEEET------TSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred             CcccEEEEEEcC--CCCEEEEEEC------CCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccC
Confidence            889999999999  5666666665      9999999997543  2222 22368899999999976  5 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEEEcCCCc--eeEEeeccccceEEEEEe
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLWTVDRPT--SVRTFKEHAYCVYNATWN  158 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~  158 (317)
                      |.|++||+..+ .......+..|...|.+++|+|+  +. ++++++.||.|++||++++.  ....+..|...|.+++|+
T Consensus        79 g~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           79 GKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             SCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             CEEEEEEcCCC-ceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            99999999865 12256677789999999999999  76 99999999999999998873  344567889999999999


Q ss_pred             cC------------CCCeEEEEeCCCeEEEEeCCCCCc----eeeeccCccceEEEEecCCC---CcEEEEEecCCcEEE
Q 021121          159 PR------------HSDVFCSASGDCTLRIWDVREMGS----TMIIPAHEFEILACDWNKYD---DCLIASASVDKSIKI  219 (317)
Q Consensus       159 ~~------------~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~v  219 (317)
                      |.            ++.++++++.||.|++||+++++.    ...+..|...|.+++|+| +   +++|++++.||.|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEEeCCCEEEE
Confidence            94            389999999999999999987753    346678999999999999 7   899999999999999


Q ss_pred             EEccCCCccE--EE--EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          220 WDVRNYRVPI--AV--LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       220 ~d~~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ||++....+.  ..  ...|...|++++|+|+++ +|++++.||.|++|++...
T Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEET
T ss_pred             EeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCCC
Confidence            9999864322  22  234788999999999999 6999999999999999854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.8e-39  Score=272.34  Aligned_cols=250  Identities=18%  Similarity=0.345  Sum_probs=204.1

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC--------CCCceeeccCC------------cceEEEEEecC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--------ANPIRSLHEHT------------REVHSADYNPT  117 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~~~~  117 (317)
                      .+.+.|++++|+|++ .+|++|+.||.|++|++.....        .+....+.+|.            ..|.+++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            467889999999998 6999999999999999986521        11356778898            88999999999


Q ss_pred             CC-CEEEEEcCCCEEEEEEcCCCcee---------------------------------------EE-eeccccceEEEE
Q 021121          118 RR-DSFITSSWDDTVKLWTVDRPTSV---------------------------------------RT-FKEHAYCVYNAT  156 (317)
Q Consensus       118 ~~-~~l~~~~~dg~v~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~  156 (317)
                      +. ..+++++.|+.|++||+.+++..                                       .. ..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            73 38999999999999999764331                                       12 357899999999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCC-Ccee-------eeccCccceEEEEecCCCC-cEEEEEecCCcEEEEEccCCCc
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREM-GSTM-------IIPAHEFEILACDWNKYDD-CLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~-------~~~~~~~~v~~i~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      |+|+ +++|+++ .|+.|++||+++. +...       .+..|...|.+++|+| ++ ++|++++.|+.|++||+++.+.
T Consensus       185 ~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          185 INSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             ECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9998 8899998 7999999999843 3333       2557889999999999 76 9999999999999999998663


Q ss_pred             ---cEEEEecCCC------------ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccce----------
Q 021121          228 ---PIAVLNGHGY------------AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF----------  282 (317)
Q Consensus       228 ---~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----------  282 (317)
                         ....+..|..            .|.+++|+|+++ +|++++. +.|++||+++....+..+..|...          
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence               1567777775            899999999998 6888888 999999999744466777777642          


Q ss_pred             -----eEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          283 -----AVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       283 -----v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                           +..++|+|+ +.+|++++.||.|++||+....
T Consensus       340 ~~i~~~~~~~~s~~-~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          340 DCIFDKFECCWNGS-DSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             SGGGCCCCEEECTT-SSEEEEECSTTEEEEEETTTCC
T ss_pred             cccccceEEEECCC-CCEEEEeccCCEEEEEEcCCCc
Confidence                 234999999 7899999999999999997653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-37  Score=259.94  Aligned_cols=245  Identities=14%  Similarity=0.201  Sum_probs=201.1

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee--ccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL--HEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ..|...|++++|+|+++.+|++|+.||.|++||+...   .....+  .+|...|.+++|+|++..+|++++.|+.|++|
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ---NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST---TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc---ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            3688999999999998569999999999999999865   344443  36999999999999433399999999999999


Q ss_pred             EcCCCceeEEeecc---ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc-EEEE
Q 021121          135 TVDRPTSVRTFKEH---AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-LIAS  210 (317)
Q Consensus       135 d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~~  210 (317)
                      |+++ .....+..+   ...|.+++|+|+ +.++++++.|+.|++||+ +++.+..+..|...|.+++|+| +++ ++++
T Consensus       147 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s  222 (383)
T 3ei3_B          147 DFSG-SVIQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMAT  222 (383)
T ss_dssp             ETTS-CEEEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEE
T ss_pred             ECCC-CceEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEE
Confidence            9985 555555443   478999999998 889999999999999999 5678888889999999999999 777 9999


Q ss_pred             EecCCcEEEEEccCCC---ccEEEEecCCCceeEEEecC-CCCeeEEeeecCCeEEEEecccccceeeeeeccc------
Q 021121          211 ASVDKSIKIWDVRNYR---VPIAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT------  280 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------  280 (317)
                      ++.|+.|++||+++.+   ..+..+ +|...|++++|+| ++. +|++++.|+.|++||+++.+.. ..+..|.      
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~  299 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQH  299 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTT
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccc-ccccccccccccc
Confidence            9999999999999733   223444 6999999999999 888 7999999999999999987633 3444332      


Q ss_pred             -----------ceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          281 -----------EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       281 -----------~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                                 ..+..++|+|+ +.+  +++.||.|++||+....
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~d-g~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPD-DQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCC-TTT--CTTCCCCEEEEETTTCC
T ss_pred             ccceEEeccCCCCceEEEecCC-ccc--ccCCCCeEEEEecCCCc
Confidence                       23444666776 444  77899999999997653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-38  Score=263.35  Aligned_cols=248  Identities=19%  Similarity=0.337  Sum_probs=212.6

Q ss_pred             cCCCCeeEEEecCC---CCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-----cCCcceEEEEEecC----CCCEEEEE
Q 021121           58 DTADGVYDLAWSES---HDSLLIAAVADGSVKIYDTALPPTANPIRSLH-----EHTREVHSADYNPT----RRDSFITS  125 (317)
Q Consensus        58 ~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~~l~~~  125 (317)
                      +|...|++++|+|+   +...+++++.++.|++|++..+   ..+..+.     .|...|.+++|+|+    +. +|++|
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~   91 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ---GEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVA   91 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG---GCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC---cEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEe
Confidence            68999999999984   4467777888889999999865   3333333     26688999999999    44 89999


Q ss_pred             cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecC
Q 021121          126 SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNK  202 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~  202 (317)
                      +.||.|++||+.+++.+..+..|...|.+++|+|+++.++++++.||.|++||+++++.+..+   ..|...|.+++|+|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            999999999999999999999999999999999944899999999999999999999888887   67999999999999


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCcc---------------------------EEEEecCCCceeEEEecCCCCeeEEee
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVP---------------------------IAVLNGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                       ++++|++++.|+.|++||+++.+..                           ......|...|.+++|+  ++ +|+++
T Consensus       172 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~  247 (366)
T 3k26_A          172 -LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSK  247 (366)
T ss_dssp             -TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEE
T ss_pred             -CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEE
Confidence             9999999999999999999864321                           22333489999999998  55 79999


Q ss_pred             ecCCeEEEEecccccc-------------eeeeeecccceeEeEEEEecc-CCeEEEeecCCcEEEEecCCC
Q 021121          256 SYDMTVCLWDFMVEDA-------------LVGRYDHHTEFAVGVDMSVLV-EGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       256 ~~d~~i~vwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.|+.|++||+.+.+.             .+..+..|...|.+++|+|+. +.+|++++.||.|++||+...
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            9999999999987642             356778889999999999973 579999999999999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-37  Score=261.57  Aligned_cols=261  Identities=18%  Similarity=0.292  Sum_probs=209.2

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...|.+++|+|  ++.++++++.      +|.|++||+..... ..  ....|...|.+++|++   .++++|+.||.|
T Consensus       133 ~~~~v~~v~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~-~~--~~~~~~~~v~~~~~~~---~~l~~~~~dg~i  198 (401)
T 4aez_A          133 ESTYVASVKWSH--DGSFLSVGLG------NGLVDIYDVESQTK-LR--TMAGHQARVGCLSWNR---HVLSSGSRSGAI  198 (401)
T ss_dssp             TTCCEEEEEECT--TSSEEEEEET------TSCEEEEETTTCCE-EE--EECCCSSCEEEEEEET---TEEEEEETTSEE
T ss_pred             CCCCEEEEEECC--CCCEEEEECC------CCeEEEEECcCCeE-EE--EecCCCCceEEEEECC---CEEEEEcCCCCE
Confidence            578899999999  5666666665      99999999987652 22  2227889999999953   599999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++||+...  ......+..|...|.+++|+|++. +|++++.||.|++||+++++....+..|...|.+++|+|++..++
T Consensus       199 ~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll  275 (401)
T 4aez_A          199 HHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL  275 (401)
T ss_dssp             EEEETTSS--SCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred             EEEecccC--cceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence            99999743  255677888999999999999987 999999999999999999999999999999999999999877888


Q ss_pred             EEEe--CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE--ecCCcEEEEEccCCCc-cEEEEecCCCcee
Q 021121          166 CSAS--GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA--SVDKSIKIWDVRNYRV-PIAVLNGHGYAVR  240 (317)
Q Consensus       166 ~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~-~~~~~~~~~~~v~  240 (317)
                      ++++  .|+.|++||+++++.+..+. +...+.+++|+| ++++++++  +.|+.|++||+++.+. ....+.+|...|.
T Consensus       276 ~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~  353 (401)
T 4aez_A          276 ATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL  353 (401)
T ss_dssp             EEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence            8876  79999999999998888886 667899999999 88888884  4899999999998543 2334678999999


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeE
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV  286 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  286 (317)
                      +++|+|+++ +|++++.||.|++||+.+++.+......+......+
T Consensus       354 ~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i  398 (401)
T 4aez_A          354 YSALSPDGR-ILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSI  398 (401)
T ss_dssp             EEEECTTSS-EEEEECTTSEEEEEECCC------------------
T ss_pred             EEEECCCCC-EEEEEeCCCcEEEEECCCCccccccccccCCCccce
Confidence            999999998 799999999999999998875443333333333333

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-39  Score=276.73  Aligned_cols=250  Identities=10%  Similarity=0.098  Sum_probs=198.9

Q ss_pred             eecCCCCeeEEEecCCC-C-------CeEEE-------------------EEcCCeEEEEEeCCCCCCC-CceeeccCCc
Q 021121           56 AFDTADGVYDLAWSESH-D-------SLLIA-------------------AVADGSVKIYDTALPPTAN-PIRSLHEHTR  107 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~-~-------~~l~~-------------------~~~dg~i~v~~~~~~~~~~-~~~~~~~~~~  107 (317)
                      .+.+.+.|.+|+|+|++ .       .+||+                   ++.|++|+||++..++... ....+..|.+
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~  208 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG  208 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence            34567889999999875 1       35655                   4567899999997652111 1133566788


Q ss_pred             ceEEEEEecCC-----CCEEEEEcCCCEEEEEEcCCCce-----------eEEeeccccceEEEEEecCCCCeEEEEeCC
Q 021121          108 EVHSADYNPTR-----RDSFITSSWDDTVKLWTVDRPTS-----------VRTFKEHAYCVYNATWNPRHSDVFCSASGD  171 (317)
Q Consensus       108 ~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (317)
                      .|.+++|+|++     ..+|++++.||+|++||+.++..           ...+.+|...|++++|+|+  ..|++|+.|
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~D  286 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKN  286 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETT
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCC
Confidence            99999999972     23899999999999999987642           2467788999999999985  479999999


Q ss_pred             CeEEEEeCCCCC-ceeeeccCccceEEE--EecCCCC-cEEEEEecCCcEEEEEccCCCccEEEEecCCC--ceeEEEec
Q 021121          172 CTLRIWDVREMG-STMIIPAHEFEILAC--DWNKYDD-CLIASASVDKSIKIWDVRNYRVPIAVLNGHGY--AVRKVKFS  245 (317)
Q Consensus       172 g~i~i~d~~~~~-~~~~~~~~~~~v~~i--~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~  245 (317)
                      |+|++||+++++ +...+..|...|.++  .|+| ++ ++|++++.|++|++||+++.+. ...+.+|..  .|.+++|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fs  364 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYC  364 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEE
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeC
Confidence            999999999764 445678899999999  5677 76 8999999999999999998654 444555543  58899999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      |+++ .+++++.|++|++||++++. ....+.+|.+.|++++|+|+ +.+|++|+.||+|++|++..
T Consensus       365 p~~~-~l~s~~~d~tv~lwd~~~~~-~~~~l~gH~~~V~sva~Sp~-g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          365 PQIY-SYIYSDGASSLRAVPSRAAF-AVHPLVSRETTITAIGVSRL-HPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             TTTT-EEEEECSSSEEEEEETTCTT-CCEEEEECSSCEEEEECCSS-CCBCEEEETTTEEECCBSCS
T ss_pred             CCcC-eEEEeCCCCcEEEEECcccc-cceeeecCCCceEEEEeCCC-CCeEEEEECCCEEEEEechH
Confidence            9998 58999999999999999876 44567789999999999998 78999999999999999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=287.27  Aligned_cols=252  Identities=23%  Similarity=0.382  Sum_probs=217.5

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEE
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLW  134 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iw  134 (317)
                      .+|.+.|++++|+|++ .+|++|+.||.|++||+..+ .......+.+|..+|.+++|+|+  +. ++++|+.||.|++|
T Consensus         6 ~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            6 NAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIW   82 (753)
T ss_dssp             --CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSCEEEE
T ss_pred             ccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCeEEEE
Confidence            3789999999999998 59999999999999999743 33566778899999999999987  66 99999999999999


Q ss_pred             EcCCCc--eeEEeeccccceEEEEEecCC-CCeEEEEeCCCeEEEEeCCCCC--ceeeeccCccceEEEEecCC------
Q 021121          135 TVDRPT--SVRTFKEHAYCVYNATWNPRH-SDVFCSASGDCTLRIWDVREMG--STMIIPAHEFEILACDWNKY------  203 (317)
Q Consensus       135 d~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~------  203 (317)
                      |+.+++  ....+..|...|.+++|+|+. +.++++++.||.|++||++++.  ....+..|...|.+++|+|.      
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  677778899999999999974 6899999999999999998873  34556788999999999994      


Q ss_pred             ------CCcEEEEEecCCcEEEEEccCCC---ccEEEEecCCCceeEEEecCC---CCeeEEeeecCCeEEEEecccccc
Q 021121          204 ------DDCLIASASVDKSIKIWDVRNYR---VPIAVLNGHGYAVRKVKFSPH---RRNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       204 ------~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                            ++.++++|+.||.|++||+++..   .+...+.+|...|++++|+|+   +. +|++++.||.|++||+.+++.
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCC
Confidence                  48899999999999999999865   334567789999999999999   66 799999999999999988641


Q ss_pred             ----eeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          272 ----LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       272 ----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                          .......|...|++++|+|+ +.+|++++.||.|++|++...
T Consensus       242 ~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          242 PWKKTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CCBCCBSSSSCCSSCCCCEEECTT-TCCEEEECSSSCEECCBCCSS
T ss_pred             cceeEEeccCCCCCceEEEEEcCC-CCEEEEEcCCCEEEEEecCCC
Confidence                23344568889999999998 789999999999999999853

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-38  Score=266.99  Aligned_cols=294  Identities=13%  Similarity=0.068  Sum_probs=208.9

Q ss_pred             cCcceeEEEEe---cCCCCeEEEEEecccccccCceEEEEecCCCCC------cceeeeeecCCCCeeEEEecCC-----
Q 021121            6 TPFNGYSVKFS---PFYESRLAVATAQNFGILGNGRVHVLDLSPAAP------ALTELVAFDTADGVYDLAWSES-----   71 (317)
Q Consensus         6 ~~~~v~~~~~~---p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-----   71 (317)
                      .+...+++.|.   |. ...+++++.       ++.|.+|+......      ....+....+...+..+.|++.     
T Consensus        14 l~~~p~~~~w~~~~~~-~~~l~a~g~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (393)
T 4gq1_A           14 LNVRPYTTTWCSQSPS-CSNLLAIGH-------DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE   85 (393)
T ss_dssp             TTCCEEEEEECTTSGG-GTTEEEEEE-------SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC
T ss_pred             CCCCCeEEEEeCCCCC-CCCEEEEEC-------CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc
Confidence            34566777885   43 234555554       77899998754321      1223333455556666666532     


Q ss_pred             --------------CCCeEEEEEcCCeEEEEEeCCCCCC--CCceeeccCCcceEEEEEec--------CCCCEEEEEcC
Q 021121           72 --------------HDSLLIAAVADGSVKIYDTALPPTA--NPIRSLHEHTREVHSADYNP--------TRRDSFITSSW  127 (317)
Q Consensus        72 --------------~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~--------~~~~~l~~~~~  127 (317)
                                    ...+|++++.|++|++||...++..  ..+..+.+|.+.|++++|+|        +++ +|++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~  164 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGD  164 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEET
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEEC
Confidence                          1247999999999999999865211  23345779999999999998        666 9999999


Q ss_pred             CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-------------------
Q 021121          128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-------------------  188 (317)
Q Consensus       128 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------  188 (317)
                      |++|++||++++..+..+..|..++.+++|+|++..+|++++.||.|++||+++++.....                   
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            9999999999988888888899999999999986678999999999999999876543221                   


Q ss_pred             ------ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee-------------------EEE
Q 021121          189 ------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR-------------------KVK  243 (317)
Q Consensus       189 ------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~-------------------~~~  243 (317)
                            .+|...+.++.|++.+++.+++++.|+.+++||+...+. ...+..|...+.                   .+.
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEE
Confidence                  246667889998754999999999999999999986543 333333332222                   223


Q ss_pred             ecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          244 FSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       244 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +.+.+..++++|+.||.|++||+.+++. ......|..+|.+++|+|+ +++||+++.+| +.+|++..
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspd-G~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQD-GSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTT-SSEEEEEESSE-EEEEEEGG
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCC-CCEEEEEeCCC-eEEEEEeC
Confidence            3333444678888999999999998874 4566778889999999999 89999998776 66776643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.8e-38  Score=265.76  Aligned_cols=248  Identities=19%  Similarity=0.244  Sum_probs=209.5

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-CCCceeeccCCcceEEEEEec-CCCCEEEEEcCCCEEEEEEcCCC
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-ANPIRSLHEHTREVHSADYNP-TRRDSFITSSWDDTVKLWTVDRP  139 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~  139 (317)
                      ....++++|+...++++++.+|.|++|++..... ......+.+|.+.|.+++|+| ++. +|++|+.||.|++||+.++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEEEccCC
Confidence            4556889988654555688899999999865322 234556788999999999999 665 9999999999999999987


Q ss_pred             -------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee--ccCccceEEEEecCCCCcEEEE
Q 021121          140 -------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII--PAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       140 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                             +.+..+.+|...|.+++|+|++.+++++++.||.|++||+++++.+..+  ..|...|.+++|+| ++++|++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  193 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICT  193 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEE
Confidence                   6678888999999999999995579999999999999999999988888  78999999999999 9999999


Q ss_pred             EecCCcEEEEEccCCCccEEEE-ecCCCc-eeEEEecCCCCeeEEee---ecCCeEEEEecccccceeeee-ecccceeE
Q 021121          211 ASVDKSIKIWDVRNYRVPIAVL-NGHGYA-VRKVKFSPHRRNLLASC---SYDMTVCLWDFMVEDALVGRY-DHHTEFAV  284 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~-~~~~~~v~  284 (317)
                      ++.|+.|++||+++.+. +..+ ..|... +.+++|+|++. +|++|   +.|+.|++||+++.+...... ..|...+.
T Consensus       194 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  271 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL  271 (402)
T ss_dssp             EETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred             EecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence            99999999999998764 5555 678765 89999999987 78888   789999999999876433333 35677899


Q ss_pred             eEEEEeccCCeEE-EeecCCcEEEEecCCCC
Q 021121          285 GVDMSVLVEGLLA-STGWDELVYVWQQGMDP  314 (317)
Q Consensus       285 ~~~~~~~~~~~l~-s~~~dg~i~~w~~~~~~  314 (317)
                      .++|+|+ +.+|+ +++.||.|++|++....
T Consensus       272 ~~~~s~~-~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          272 LPFFDPD-TNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEETT-TTEEEEEETTCSCEEEEEECSST
T ss_pred             EEEEcCC-CCEEEEEEcCCCeEEEEEecCCC
Confidence            9999999 56665 66689999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-38  Score=268.56  Aligned_cols=247  Identities=14%  Similarity=0.216  Sum_probs=202.1

Q ss_pred             cCCCCeeEEEecC-CCCCeEEEEEcCCeEEEEEeCC---CCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           58 DTADGVYDLAWSE-SHDSLLIAAVADGSVKIYDTAL---PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        58 ~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~v~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      .|.+.|++++|+| ++ .+|++|+.||.|++||+..   +........+ .|...|.+++|+|++. +|++++.||.|++
T Consensus        61 ~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~v  137 (437)
T 3gre_A           61 NEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIV  137 (437)
T ss_dssp             TTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred             CCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEE
Confidence            6789999999999 77 6999999999999999876   3212223333 5899999999999887 9999999999999


Q ss_pred             EEcC---CCceeEEeec------------cccceEEEE--EecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--Cccc
Q 021121          134 WTVD---RPTSVRTFKE------------HAYCVYNAT--WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HEFE  194 (317)
Q Consensus       134 wd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~  194 (317)
                      ||++   +++....+..            +...+.++.  ++++ +.++++++.||.|++||+++++.+..+..  |...
T Consensus       138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~  216 (437)
T 3gre_A          138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA  216 (437)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC
T ss_pred             EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc
Confidence            9995   5555544432            334455555  4466 78999999999999999999999998887  8899


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-cCCCceeEEEecC----CCCeeEEeeecCCeEEEEecccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSP----HRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      |.+++|+| ++++|++|+.||.|++||+++.+ ++..+. .|..+|++++|+|    ++. +|++++.||.|++||++++
T Consensus       217 v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          217 VSSICIDE-ECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             EEEEEECT-TSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTT
T ss_pred             eEEEEECC-CCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCC
Confidence            99999999 89999999999999999999855 466654 7888999996665    555 7999999999999999887


Q ss_pred             cceeeeeec--------------------------ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          270 DALVGRYDH--------------------------HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       270 ~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +. ...+.+                          |...|++++|+ + +.+|++++.||.|++||+....
T Consensus       294 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          294 HC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N-DKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             EE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T-TEEEEEEGGGTEEEEEETTCGG
T ss_pred             cE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C-ceEEEecCCCCeEEEEECCCcc
Confidence            62 233322                          66778999999 5 6899999999999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.6e-38  Score=268.52  Aligned_cols=251  Identities=15%  Similarity=0.161  Sum_probs=197.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .|...|++|+|+|.++.+||+|+.||.|+|||+..+ .......+.+|.+.|++++|+|.+..+|++++.||+|++||++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            577889999999977689999999999999999865 2233445668999999999998544499999999999999998


Q ss_pred             CCceeEEeec--cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC
Q 021121          138 RPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       138 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      ++........  +...+.+++|+|+ +.+|++|+.||.|++||++. +.+..+..|...|.+++|+|....++++++.|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             CCceeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence            7644333332  3346789999998 89999999999999999874 566778889999999999995556899999999


Q ss_pred             cEEEEEccCCCcc--EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc------eeEeEE
Q 021121          216 SIKIWDVRNYRVP--IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE------FAVGVD  287 (317)
Q Consensus       216 ~i~v~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~v~~~~  287 (317)
                      .|++||+++.+..  .....+|...|++++|+|++. +|++++.||.|++||+.+++.. ..+..|..      .+....
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~  351 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCP-LGLIPHPHRHFQHLTPIKAA  351 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSE-EEECCCCCCCCSSSCCCBCE
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccc-eEEecccccccccceeEEEE
Confidence            9999999876532  233457999999999999998 7999999999999999987633 33333321      233456


Q ss_pred             EEeccCCeEEEee------------cCCcEEEEecCCCC
Q 021121          288 MSVLVEGLLASTG------------WDELVYVWQQGMDP  314 (317)
Q Consensus       288 ~~~~~~~~l~s~~------------~dg~i~~w~~~~~~  314 (317)
                      |+|+ +.++++++            .++.|++||...++
T Consensus       352 ~~~~-~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~  389 (435)
T 4e54_B          352 WHPR-YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK  389 (435)
T ss_dssp             ECSS-SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred             EcCC-CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence            6665 44444443            34689999987653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.6e-38  Score=257.01  Aligned_cols=246  Identities=15%  Similarity=0.147  Sum_probs=210.8

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc-
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-  136 (317)
                      .|.+.|++++|+|++ .+|++++.||.|++|++..............|...|.+++|+|++..++++++.||.|++||+ 
T Consensus         9 ~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            688899999999998 699999999999999998763222355566899999999999986327899999999999999 


Q ss_pred             CCCceeEEeec--cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC---------CCceeeeccCccceEEEEecCCCC
Q 021121          137 DRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE---------MGSTMIIPAHEFEILACDWNKYDD  205 (317)
Q Consensus       137 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~i~~~~~~~  205 (317)
                      ++++. ..+..  |...|.+++|+|  +.++++++.|+.|++||+++         ++.+..+. +...+.+++|+| ++
T Consensus        88 ~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~  162 (342)
T 1yfq_A           88 GSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS-SR  162 (342)
T ss_dssp             SSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS-SE
T ss_pred             cCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC-Cc
Confidence            77654 67778  999999999999  78899999999999999988         77676666 888999999998 55


Q ss_pred             cEEEEEecCCcEEEEEccC-CCcc-EEEEecCCCceeEEEecC-CCCeeEEeeecCCeEEEEecccc-----cceeeeee
Q 021121          206 CLIASASVDKSIKIWDVRN-YRVP-IAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVE-----DALVGRYD  277 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~-~~~~-~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~  277 (317)
                        +++++.|+.|++||+++ .... ......|...+.+++|+| +++ ++++++.||.|++|+++..     ......+.
T Consensus       163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence              89999999999999998 5532 344556888999999999 988 7999999999999999876     24556777


Q ss_pred             cccc---------eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          278 HHTE---------FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       278 ~~~~---------~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .|..         .|.+++|+|+ +.+|++++.||.|++||+...
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTT-TCCEEEEETTSCEEEEETTTT
T ss_pred             cccccccccccceeEEEEEEcCC-CCEEEEecCCceEEEEcCccH
Confidence            7755         9999999998 789999999999999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.3e-37  Score=253.05  Aligned_cols=276  Identities=11%  Similarity=0.152  Sum_probs=211.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|+|  ++.+++++.       +..+++|++++..    ......+ ..+..+++.++++.++++++.|+.|
T Consensus        18 h~~~V~~v~fs~--dg~~la~g~-------~~~~~iw~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           18 VSNPVTDYEFNQ--DQSCLILST-------LKSFEIYNVHPVA----HIMSQEM-RHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             -CCCCCEEEECT--TSSEEEEEC-------SSEEEEEEETTEE----EEEEEEC-SCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             CCCceEEEEECC--CCCEEEEEc-------CCEEEEEecCCcc----eeeeeec-CCeEEEEEcCCCCEEEEEECCccEE
Confidence            778999999999  677777776       3468899987543    2222222 3588888988875455678888999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++||+.++   +.+..+. +...|.+++|+++   .++++. |+.|++||+.++ +.+..+..   +...+++++   .+
T Consensus        84 ~iWd~~~~---~~~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~---~~  149 (355)
T 3vu4_A           84 HIWDDVKK---QDVSRIK-VDAPVKDLFLSRE---FIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN---GL  149 (355)
T ss_dssp             EEEETTTT---EEEEEEE-CSSCEEEEEECSS---EEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET---TE
T ss_pred             EEEECCCC---cEEEEEE-CCCceEEEEEcCC---EEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc---cE
Confidence            99998866   5565555 6779999999876   344443 789999999988 66666654   444556666   45


Q ss_pred             EEE--EeCCCeEEEEeCCCCC----------------ceeeeccCccceEEEEecCCCCcEEEEEecCCc-EEEEEccCC
Q 021121          165 FCS--ASGDCTLRIWDVREMG----------------STMIIPAHEFEILACDWNKYDDCLIASASVDKS-IKIWDVRNY  225 (317)
Q Consensus       165 l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~v~d~~~~  225 (317)
                      ++.  |+.+|.|++||+++++                ....+.+|..+|.+++|+| ++++|++++.|++ |++||++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCC
Confidence            555  6899999999999765                2677889999999999999 9999999999998 999999987


Q ss_pred             CccEEEEe-c-CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-eee---------------------ecccc
Q 021121          226 RVPIAVLN-G-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-GRY---------------------DHHTE  281 (317)
Q Consensus       226 ~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~---------------------~~~~~  281 (317)
                      +. +..+. + |...|++++|+|+++ +|++++.|++|++||++...... ..+                     ..+..
T Consensus       229 ~~-~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (355)
T 3vu4_A          229 VL-VREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV  306 (355)
T ss_dssp             CE-EEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred             cE-EEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence            64 66666 5 999999999999998 79999999999999997653110 010                     01122


Q ss_pred             eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          282 FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ....++|+++ ++.|++++.||.+++|++...
T Consensus       307 ~~~~~a~~~d-~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          307 RGCKIAWISE-SSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCEEEESSS-SEEEEEETTTTEEEEEEEEEE
T ss_pred             CceEEEEeCC-CCEEEEEeCCCeEEEEEEEcC
Confidence            3467899998 789999999999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=246.81  Aligned_cols=239  Identities=20%  Similarity=0.271  Sum_probs=210.0

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      ..|.+.|++++| |++ .+|++|+.||.|++||+...   .....+..|...|.+++|+|++. ++++++.||.|++|++
T Consensus        15 ~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMINGVPL   88 (313)
T ss_dssp             CCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTT-EEEEEETTSCEEEEET
T ss_pred             hCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCC-EEEEecCCCeEEEEEe
Confidence            378999999999 887 58999999999999999765   66677788999999999999988 9999999999999998


Q ss_pred             CCC---ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          137 DRP---TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       137 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      ...   +....+..|...|.++.|.   ++++++++.||.|++||  .++....+..|...+.++.+.|.+++++++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             eecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            765   5567788899999999994   67899999999999999  567777888899999999998878899999999


Q ss_pred             CCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEecc
Q 021121          214 DKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV  292 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  292 (317)
                      |+.|++||..   .....+.. |...+.+++|+|++.  +++++.||.|++||+++++ .+..+..|...|++++|+|+ 
T Consensus       164 d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~-  236 (313)
T 3odt_A          164 DKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGD-VLRTYEGHESFVYCIKLLPN-  236 (313)
T ss_dssp             TSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTT-
T ss_pred             CCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchh-hhhhhhcCCceEEEEEEecC-
Confidence            9999999943   23556665 899999999999986  8889999999999999876 66788899999999999998 


Q ss_pred             CCeEEEeecCCcEEEEecCCCC
Q 021121          293 EGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       293 ~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      + .|++++.||.|++||+....
T Consensus       237 ~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          237 G-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             S-CEEEEETTSEEEEECTTTCC
T ss_pred             C-CEEEEecCCEEEEEECCCCc
Confidence            4 69999999999999997653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-38  Score=263.53  Aligned_cols=263  Identities=10%  Similarity=0.039  Sum_probs=210.4

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +....|.+++|+|  +++++++++.      |++|+  |.....    .+  .+|...|.+++|+|+|        .++.
T Consensus        13 ~~~~~v~sv~~Sp--DG~~iASas~------D~TV~--d~~~~~----~l--~gh~~~v~~V~FsPdg--------~~~~   68 (588)
T 2j04_A           13 EFEDWKNNLTWAR--DGTLYLTTFP------DISIG--QPKYAK----DI--NCNSKNLFHVKEFPLE--------FENK   68 (588)
T ss_dssp             CCSSSSCCEEECT--TSCEEEECSS------SEEEE--EECCCS----CC--SSBGGGTEEEEEECCC--------CCCT
T ss_pred             HhhccEEEEEECC--CCCEEEEEcC------Cceee--cccccc----ee--cCCCccEEEEEECCCC--------Ccce
Confidence            4567899999999  7888888886      99999  633322    22  3789999999999987        4555


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-----ceEEEEEec
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-----CVYNATWNP  159 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~  159 (317)
                      +.+|+.+.    .....+ .|...|.+++|+|+|. .|++++.||.|++||.++  ++..+. |..     .+.+++|+|
T Consensus        69 ~~~~~~~~----~~~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP  139 (588)
T 2j04_A           69 LDFELAQQ----NGLLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP  139 (588)
T ss_dssp             TTTSCCCS----SCSSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS
T ss_pred             EEEEeCCC----ceEeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC
Confidence            55555321    122222 4578999999999998 999999999999999654  555666 554     499999999


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCc-------eeee----ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGS-------TMII----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-  227 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-  227 (317)
                      + +++|++|+.||+|++||+++++.       +..+    .+|...|.+++|+| ++  +++++.|+.|++||+..... 
T Consensus       140 D-G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          140 I-ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             S-SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSC
T ss_pred             C-CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccc
Confidence            9 99999999999999999998753       4555    56778999999999 77  88888999999999987663 


Q ss_pred             -cEEEE-ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEE--EeccCCeEEEeecCC
Q 021121          228 -PIAVL-NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM--SVLVEGLLASTGWDE  303 (317)
Q Consensus       228 -~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg  303 (317)
                       ....+ .+|...|.+++|+  +. .|++++ ++.|++||+.+++.... ..+|...+.+++|  +|+ +..|++++.||
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~-~~gh~~~V~~va~~~s~d-~~~La~a~edG  289 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSL-KTGSLENFHIIPLNHEKE-STILLMSNKTS  289 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEE-ECSCCSCCCEEEETTCSS-CEEEEECSSCE
T ss_pred             cceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEE-EcCCCceEEEEEeeeCCC-CCEEEEEcCCC
Confidence             23455 4788899999999  45 688887 69999999998763233 3379999999999  998 78999999999


Q ss_pred             cEEEEecC
Q 021121          304 LVYVWQQG  311 (317)
Q Consensus       304 ~i~~w~~~  311 (317)
                      . ++|..+
T Consensus       290 ~-klw~~d  296 (588)
T 2j04_A          290 Y-KVLLED  296 (588)
T ss_dssp             E-EEEESS
T ss_pred             C-EEEeec
Confidence            9 999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-37  Score=253.33  Aligned_cols=265  Identities=9%  Similarity=0.082  Sum_probs=203.2

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC------
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP------   93 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~------   93 (317)
                      ++.++++++.      ||.|++||+..... ...+.    ...|.++.|+|+    +++++.|+.|++|+....      
T Consensus        47 d~~~l~sg~~------Dg~v~iwd~~~~~~-~~~~~----~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           47 DKWVCMCRCE------DGALHFTQLKDSKT-ITTIT----TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             EEEEEEEEEE------TTEEEEEEESSSSC-EEEEE----EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEET
T ss_pred             CCCEEEEECC------CCcEEEEECCCCcE-EEEEe----cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeec
Confidence            4666676665      99999999987653 22222    356888889986    999999999999986532      


Q ss_pred             CCCCCceee-ccCCcceEEEEEec--CCCCEEEEEcCCCEEEEEEcCCCceeEEee-ccccceEEEEEecCCCCeEEEEe
Q 021121           94 PTANPIRSL-HEHTREVHSADYNP--TRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus        94 ~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~  169 (317)
                      ...+.+... ..|..+|.+++|+|  ++. ++++++.||.|++||+++++...... .+...+.+++|+|+ +.++++|+
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~  189 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYS  189 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEEC
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEEc
Confidence            111223333 36778999999999  887 99999999999999999998876663 34557999999998 89999999


Q ss_pred             CCCeEEEEeCCCCCce-eeecc-CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe---cCCCcee--EE
Q 021121          170 GDCTLRIWDVREMGST-MIIPA-HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN---GHGYAVR--KV  242 (317)
Q Consensus       170 ~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~v~--~~  242 (317)
                      .||.|++||+++++.. ..+.. |..+|.+++|+| ++.+|++++ ++.|++||+++.+. ...+.   .|...+.  ++
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVG-TLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTT-CBSSCCCBC-----CCEEE
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCc-ceeecccccccccccceEE
Confidence            9999999999999887 77777 999999999999 999999999 55999999998764 22222   2434444  69


Q ss_pred             EecCCCCeeEEeeec-CCeEEEEecccccceeeeeecccceeEeEEEEe---ccCCeEEEeecCCcEEEEecC
Q 021121          243 KFSPHRRNLLASCSY-DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV---LVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +|+|+++ +|++++. |+.+++|++.........     .++..++|.+   + ...+++++.||.+.++-..
T Consensus       267 ~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          267 DIDDSGK-NMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTAD-FTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EECTTSS-EEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CC-CCEEEEEEETTEEEEEEEC
T ss_pred             EECCCCC-EEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccc-cceeEEEecCCceEEEEec
Confidence            9999999 6888887 999999999766533222     5677888887   5 5688888888888887544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.4e-36  Score=251.74  Aligned_cols=250  Identities=14%  Similarity=0.132  Sum_probs=191.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecc----cccccCceEEEEecCCCCCcceeeeee------cCCCCeeEEEecCCCCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQN----FGILGNGRVHVLDLSPAAPALTELVAF------DTADGVYDLAWSESHDSL   75 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~----~~~~~~g~i~i~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~   75 (317)
                      +...|.++++++   ..++++....    .....++.+++|++.............      .+...+.+++|+|||. +
T Consensus        72 ~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~  147 (365)
T 4h5i_A           72 NDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-V  147 (365)
T ss_dssp             TSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-C
T ss_pred             CCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-E
Confidence            345677777665   4444443321    112247889999998765433333222      2344588999999984 6


Q ss_pred             EEEE--EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE--eeccccc
Q 021121           76 LIAA--VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT--FKEHAYC  151 (317)
Q Consensus        76 l~~~--~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~  151 (317)
                      ++++  +.|++|++||+.+.   +.+..+. |...|.+++|+|+++ ++++++. +.+.+|+..+++.+..  ...|...
T Consensus       148 la~as~~~d~~i~iwd~~~~---~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDL---TEKFEIE-TRGEVKDLHFSTDGK-VVAYITG-SSLEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSS-EEEEECS-SCEEEEETTTCCEEEEECCCCTTEE
T ss_pred             EEEEECCCCCEEEEeECCCC---cEEEEeC-CCCceEEEEEccCCc-eEEeccc-eeEEEEEeccCcceeeeecCCCCCC
Confidence            6544  46899999999865   5555554 778899999999998 8888885 4566777777765543  3467889


Q ss_pred             eEEEEEecCCCCeEEEEeCCC----eEEEEeCCCCCc----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          152 VYNATWNPRHSDVFCSASGDC----TLRIWDVREMGS----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      +.+++|+|+ +..+++++.|+    .+++||+.....    ...+..|..+|++++|+| ++++||+|+.|+.|++||++
T Consensus       222 v~~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          222 LSKINFIAD-DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             EEEEEEEET-TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETT
T ss_pred             EEEEEEcCC-CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECC
Confidence            999999999 88888888877    688999876643    345667889999999999 99999999999999999999


Q ss_pred             CCCccEEE-EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          224 NYRVPIAV-LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       224 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      +++. +.. +.+|..+|++++|+|+++ +|++|+.|++|+|||+...
T Consensus       300 ~~~~-~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          300 DLSM-SKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTEE-EEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred             CCcE-EEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence            8764 554 578999999999999999 7999999999999999654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.7e-36  Score=250.97  Aligned_cols=286  Identities=17%  Similarity=0.213  Sum_probs=199.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC--CeEEEEEcCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD--SLLIAAVADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg   83 (317)
                      +...|.+++|+|+....++++ +.      ||.|++||+....    ....+.+...+.++.|+|.+.  .++++++.+|
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~-~~------d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSS-SF------DKTLKVWDTNTLQ----TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP  166 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEE-ET------TSEEEEEETTTTE----EEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred             CCCcEEEEEEccCCCcEEEEE-eC------CCeEEEeeCCCCc----cceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence            788999999999634455544 43      8999999998754    344456788899999998642  4899999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEe---------------ec
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTF---------------KE  147 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~---------------~~  147 (317)
                      .|++||+..+   .....+..|...|.+++|+|++..++++++.||.|++||++++. ....+               ..
T Consensus       167 ~v~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
T 4a11_B          167 KVQLCDLKSG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA  243 (408)
T ss_dssp             SEEEEESSSS---CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred             eEEEEeCCCc---ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence            9999999866   67778889999999999999998679999999999999998765 33333               46


Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc----ceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF----EILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      |...|.+++|+|+ ++++++++.||.|++||+++++.......+..    ......+.......+++++.++.|++||+.
T Consensus       244 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~  322 (408)
T 4a11_B          244 HNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY  322 (408)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred             ccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence            8889999999998 89999999999999999998876554432211    111122222245567777889999999999


Q ss_pred             CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      +.+ ++..+.+|...|++++|+|+++ +|++++.||.|++||+.+.+.+ .....+.   ....+.+.....+.+.+.++
T Consensus       323 ~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~  396 (408)
T 4a11_B          323 SGE-QITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPV-PDDDETT---TKSQLNPAFEDAWSSSDEEG  396 (408)
T ss_dssp             TCC-EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC-----------------------------------
T ss_pred             CCc-ceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCcc-CCCCceE---eccccccccceeecccCccC
Confidence            876 4888899999999999999998 7999999999999999987643 2222222   22344554355677788899


Q ss_pred             cEEEEecCC
Q 021121          304 LVYVWQQGM  312 (317)
Q Consensus       304 ~i~~w~~~~  312 (317)
                      .+++|+...
T Consensus       397 ~~~~W~~~~  405 (408)
T 4a11_B          397 GTSAWSHPQ  405 (408)
T ss_dssp             ---------
T ss_pred             ceeecCCcc
Confidence            999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-35  Score=249.03  Aligned_cols=257  Identities=21%  Similarity=0.354  Sum_probs=207.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...|++|+|+|  ++.++++++.      ||.|++||+.....   ......|...+.+++|++   .+|++|+.|+.+
T Consensus       146 ~~~~V~sv~fsp--dg~~lasgs~------Dg~v~iWd~~~~~~---~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i  211 (420)
T 4gga_A          146 PGEYISSVAWIK--EGNYLAVGTS------SAEVQLWDVQQQKR---LRNMTSHSARVGSLSWNS---YILSSGSRSGHI  211 (420)
T ss_dssp             TTCCEEEEEECT--TSSEEEEEET------TSCEEEEETTTTEE---EEEECCCSSCEEEEEEET---TEEEEEETTSEE
T ss_pred             CCCcEEEEEECC--CCCEEEEEEC------CCeEEEEEcCCCcE---EEEEeCCCCceEEEeeCC---CEEEEEeCCCce
Confidence            566799999999  6777777765      99999999987642   222336888899988863   589999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc----eeEEeeccccceEEEEEecCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ++||....  ...+..+.+|...+..+.|+|++. ++++++.|+.+++|+..+++    .+.....|...|.+++|+|.+
T Consensus       212 ~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~  288 (420)
T 4gga_A          212 HHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ  288 (420)
T ss_dssp             EEEETTSS--SCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC
T ss_pred             eEeeeccc--ceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc
Confidence            99998753  345667889999999999999998 99999999999999998764    355667789999999999997


Q ss_pred             CCeEEEE--eCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe--cCCcEEEEEccCCCccEEEEecCCC
Q 021121          162 SDVFCSA--SGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS--VDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       162 ~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      ..+++++  +.|+.|++||+++++....+..+ ..+.++.|+| +++.+++++  .|+.|++||+++++ ++..+.+|..
T Consensus       289 ~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~-~v~~l~gH~~  365 (420)
T 4gga_A          289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTS  365 (420)
T ss_dssp             TTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCC-EEEEECCCSS
T ss_pred             ccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCc-EEEEEcCCCC
Confidence            8888764  47999999999999888887754 5788999999 777776654  78999999999876 5888999999


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV  284 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~  284 (317)
                      .|++++|+|+++ +|++|+.|++|++||+....+ ....+.+...+.
T Consensus       366 ~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~~~-~~~~~~~~~~~~  410 (420)
T 4gga_A          366 RVLSLTMSPDGA-TVASAAADETLRLWRCFELDP-ARRREREKASAA  410 (420)
T ss_dssp             CEEEEEECTTSS-CEEEEETTTEEEEECCSCSSC-C-----------
T ss_pred             CEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCc-cchhhhccCCcc
Confidence            999999999998 799999999999999987653 334444444333

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=272.43  Aligned_cols=252  Identities=18%  Similarity=0.247  Sum_probs=209.3

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCC--CCCeEEEEEcC
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES--HDSLLIAAVAD   82 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d   82 (317)
                      .|...|++++|+|  ++.++++++.      ||.|++||+..... ........|...|++++|+|+  + .+|++|+.|
T Consensus         7 gH~~~V~~l~~s~--dg~~latg~~------dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~D   76 (753)
T 3jro_A            7 AHNELIHDAVLDY--YGKRLATCSS------DKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD   76 (753)
T ss_dssp             -CCCCEEEECCCS--SSCCEEEEET------TTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETT
T ss_pred             cCcceeEEEEECC--CCCeEEEEEC------CCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCC-CEEEEEeCC
Confidence            3789999999999  5666666665      99999999975431 112223368999999999987  6 699999999


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC--CCCEEEEEcCCCEEEEEEcCCC--ceeEEeeccccceEEEEEe
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT--RRDSFITSSWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWN  158 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~  158 (317)
                      |.|++||+..+ .......+..|...|.+++|+|+  +. .+++|+.||.|++||++++  .....+..|...|.+++|+
T Consensus        77 g~I~vwd~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           77 GKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  154 (753)
T ss_dssp             SCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred             CeEEEEECCCC-cccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence            99999999865 22256677889999999999999  76 9999999999999999887  3445667889999999999


Q ss_pred             cC------------CCCeEEEEeCCCeEEEEeCCCCC----ceeeeccCccceEEEEecCCC---CcEEEEEecCCcEEE
Q 021121          159 PR------------HSDVFCSASGDCTLRIWDVREMG----STMIIPAHEFEILACDWNKYD---DCLIASASVDKSIKI  219 (317)
Q Consensus       159 ~~------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~v  219 (317)
                      |.            ++.++++|+.||.|++||++++.    ....+..|..+|.+++|+| +   +.++++++.||.|++
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEESSSCEEE
T ss_pred             CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCEEEEEecCCEEEE
Confidence            94            37899999999999999999873    4456778999999999999 7   899999999999999


Q ss_pred             EEccCCCc----cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          220 WDVRNYRV----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       220 ~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ||+++...    .......|...|++++|+|+++ +|++++.||.|++||+....
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCSSS
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCCCC
Confidence            99988642    2233345888999999999998 69999999999999998644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.4e-35  Score=246.84  Aligned_cols=285  Identities=14%  Similarity=0.139  Sum_probs=226.4

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee---eeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL---VAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      .....+.+++|+|  ++.+++++..      ++.|++||+...... ...   ....|...|.+++|+|++ .++++++.
T Consensus       120 ~~~~~~~~~~~s~--~~~~~~~~~~------~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~  189 (433)
T 3bws_A          120 KTGFQPKSVRFID--NTRLAIPLLE------DEGMDVLDINSGQTV-RLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQ  189 (433)
T ss_dssp             ECSSCBCCCEESS--SSEEEEEBTT------SSSEEEEETTTCCEE-EECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGG
T ss_pred             cCCCCceEEEEeC--CCeEEEEeCC------CCeEEEEECCCCeEe-eecCcccccccCCceeEEEEcCCC-EEEEEECC
Confidence            3455677899999  6788887765      889999999876521 111   112577789999999987 69999999


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      |+.|++||++..   +....+..|...+.+++|+|+++.++++++.|+.|++||+++++.+..+..+ ..+.+++|+|+ 
T Consensus       190 d~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-  264 (433)
T 3bws_A          190 ANAVHVFDLKTL---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKD-  264 (433)
T ss_dssp             GTEEEEEETTTC---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTT-
T ss_pred             CCEEEEEECCCc---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCC-
Confidence            999999999765   6667777889999999999999844466668999999999999888777654 45999999999 


Q ss_pred             CCeEEEEe--------CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc-EEEEEecCCcEEEEEccCCCccEEEE
Q 021121          162 SDVFCSAS--------GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-LIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       162 ~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      ++.+++++        .||.|++||+++++....+. +...+.+++|+| +++ ++++++.++.|++||+++.+. ...+
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~  341 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKV-QKSI  341 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcE-EEEe
Confidence            77777777        58899999999887766553 556789999999 664 667778999999999997653 4444


Q ss_pred             ecCCCceeEEEecCCCCeeEEeeec---------------CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          233 NGHGYAVRKVKFSPHRRNLLASCSY---------------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~l~~~~~---------------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      . +...+.+++|+|+++ ++++++.               ||.|++||+.+++ ....+.. ...+.+++|+|+ +++|+
T Consensus       342 ~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-~~~~~~~-~~~~~~~~~s~d-g~~l~  416 (433)
T 3bws_A          342 P-VFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-VKEFWEA-GNQPTGLDVSPD-NRYLV  416 (433)
T ss_dssp             E-CSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-EEEEEEC-SSSEEEEEECTT-SCEEE
T ss_pred             c-CCCCCCeEEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECCCCc-EEEEecC-CCCCceEEEcCC-CCEEE
Confidence            4 677899999999998 4666654               5799999998876 4455554 456899999999 67777


Q ss_pred             Eee-cCCcEEEEecCC
Q 021121          298 STG-WDELVYVWQQGM  312 (317)
Q Consensus       298 s~~-~dg~i~~w~~~~  312 (317)
                      +++ .|+.|++|+++.
T Consensus       417 ~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          417 ISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEETTTTEEEEEEETT
T ss_pred             EEECCCCeEEEEEecC
Confidence            666 599999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.2e-34  Score=241.11  Aligned_cols=268  Identities=14%  Similarity=0.147  Sum_probs=210.9

Q ss_pred             eEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee
Q 021121           22 RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS  101 (317)
Q Consensus        22 ~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  101 (317)
                      .++++++.      ++.|++||+....    .+..+.+...+.+++|+|++..++++++.++.|++||+.++   +....
T Consensus         3 ~l~vs~~~------d~~v~v~d~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~   69 (391)
T 1l0q_A            3 FAYIANSE------SDNISVIDVTSNK----VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIAT   69 (391)
T ss_dssp             EEEEEETT------TTEEEEEETTTTE----EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEE
T ss_pred             EEEEEcCC------CCEEEEEECCCCe----EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEE
Confidence            45555554      8999999998654    33334455679999999998645577778999999999765   55555


Q ss_pred             eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE-EEEeCCCeEEEEeCC
Q 021121          102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF-CSASGDCTLRIWDVR  180 (317)
Q Consensus       102 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~  180 (317)
                      +..+. .+.+++|+|+++.++++++.++.|++||+.+++.+..+..+ ..+.+++|+|+ ++.+ ++++.++.|++||++
T Consensus        70 ~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           70 VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD-GKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT-SSEEEEEETTTTEEEEEETT
T ss_pred             EECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECC
Confidence            55444 89999999999844466677899999999999888877754 46899999999 5544 788889999999999


Q ss_pred             CCCceeeeccCccceEEEEecCCCCcEE-EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee---
Q 021121          181 EMGSTMIIPAHEFEILACDWNKYDDCLI-ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS---  256 (317)
Q Consensus       181 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---  256 (317)
                      +++....+..+ ..+.+++|+| +++.+ ++++.++.|++||+++.+. ...+. +...+.+++|+|+++. |++++   
T Consensus       147 ~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~-l~~~~~~~  221 (391)
T 1l0q_A          147 TKAVINTVSVG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTK-AYVTNVDK  221 (391)
T ss_dssp             TTEEEEEEECC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSE-EEEEEECS
T ss_pred             CCcEEEEEecC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECCCCCE-EEEEecCc
Confidence            98888777755 4568999999 77666 6778889999999988653 44444 5668899999999985 65555   


Q ss_pred             cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe-EEEeecCCcEEEEecCCC
Q 021121          257 YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL-LASTGWDELVYVWQQGMD  313 (317)
Q Consensus       257 ~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~i~~w~~~~~  313 (317)
                      .++.|++||+.+++ .+..+..|. .+.+++|+|+ ++. +++++.|+.|++||+...
T Consensus       222 ~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~d-g~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          222 YFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPD-GKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             SCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTT-SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcEEEEECCCCe-EEEEEecCC-CccEEEEccC-CCEEEEEcCCCCEEEEEECCCC
Confidence            68999999998876 455666654 4789999999 554 478889999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=248.75  Aligned_cols=242  Identities=14%  Similarity=0.067  Sum_probs=198.9

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-------------------------------------
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-------------------------------------  103 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-------------------------------------  103 (317)
                      .++.+++|+|+|. +|+++ .++.|++||+.+++....+..+.                                     
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4689999999984 65555 57899999998763110222211                                     


Q ss_pred             -----------------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC--CCceeEEee--ccccceEEEEEecCCC
Q 021121          104 -----------------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFK--EHAYCVYNATWNPRHS  162 (317)
Q Consensus       104 -----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~  162 (317)
                                       .|...|.+++|+|+++.++++++.||.|++||+.  +++.+..+.  .+...|.+++|+|+ +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED-D  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT-S
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC-C
Confidence                             3445799999999998335899999999999999  888888776  46688999999998 8


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCcee----eeccCccceEEEEecCCC---CcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTM----IIPAHEFEILACDWNKYD---DCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      .+|++++.+|.+++|++.+++...    .+.+|...|.+++|+| +   +++|++++.|+.|++||+++.+.....+.+|
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            999999999999999998876554    6778999999999999 8   8999999999999999999876533346689


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-------------------------ccceeEeEEEEe
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-------------------------HTEFAVGVDMSV  290 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~  290 (317)
                      ...|++++|+ +++ +|++++.|+.|++||+.+++ .+..+..                         ....|.+++|+|
T Consensus       241 ~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          241 KHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             SSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            9999999999 888 79999999999999999876 3344432                         235689999999


Q ss_pred             ccCCeEEEee-cCCcEEEEec
Q 021121          291 LVEGLLASTG-WDELVYVWQQ  310 (317)
Q Consensus       291 ~~~~~l~s~~-~dg~i~~w~~  310 (317)
                      + +.+|++++ .|+.|++|++
T Consensus       318 ~-~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          318 N-LPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             S-SSEEEEEETTCSEEEEEEE
T ss_pred             C-CCEEEEEECCCCeEEEEEe
Confidence            8 77888888 8999999999

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.9e-35  Score=246.88  Aligned_cols=232  Identities=27%  Similarity=0.474  Sum_probs=206.4

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ++...|.+++|  ++ .++++|+.||.|++||+.++   +....+.+|...|.+++|  ++. ++++|+.||.|++||++
T Consensus       131 ~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          131 ETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             SSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEESS
T ss_pred             CCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECC
Confidence            46677999888  45 69999999999999999766   677788899999999999  455 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce---eeeccCccceEEEEecCCCCcEEEEEecC
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST---MIIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      +++.+..+..|...|.+++|+   +..+++++.||.|++||+++++..   ..+.+|...|.++++   +++++++++.|
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~d  275 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGD  275 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETT
T ss_pred             CCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCC
Confidence            999999999999999999997   458999999999999999988765   567789999999998   56799999999


Q ss_pred             CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC
Q 021121          215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  294 (317)
                      +.|++||+++.+ .+..+.+|...|.++.|+  +. ++++|+.||.|++||+++++ .+..+.+|...|.+++|  + +.
T Consensus       276 g~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~--~-~~  347 (435)
T 1p22_A          276 RTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRF--D-NK  347 (435)
T ss_dssp             SEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEC--C-SS
T ss_pred             CeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCCC-EEEEEeCCcCcEEEEEe--c-CC
Confidence            999999999876 478888999999999995  44 79999999999999999876 66788899999999999  3 78


Q ss_pred             eEEEeecCCcEEEEecCC
Q 021121          295 LLASTGWDELVYVWQQGM  312 (317)
Q Consensus       295 ~l~s~~~dg~i~~w~~~~  312 (317)
                      +|++|+.||.|++||+..
T Consensus       348 ~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          348 RIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             EEEEEETTSCEEEEEHHH
T ss_pred             EEEEEeCCCcEEEEECCC
Confidence            999999999999999854

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=243.13  Aligned_cols=233  Identities=12%  Similarity=0.110  Sum_probs=185.5

Q ss_pred             EecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC---------
Q 021121           67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD---------  137 (317)
Q Consensus        67 ~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~---------  137 (317)
                      .+.+++ .++++|+.||.|++||+..+   +.+..+.  ...|.++.|+|.    +++++.|+.|++|+..         
T Consensus        43 ~~~~d~-~~l~sg~~Dg~v~iwd~~~~---~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           43 SMYYDK-WVCMCRCEDGALHFTQLKDS---KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSEEE-EEEEEEEETTEEEEEEESSS---SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhcCCC-CEEEEECCCCcEEEEECCCC---cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC
Confidence            344555 69999999999999999876   5555554  466778888876    8999999999999765         


Q ss_pred             CCceeEEee-ccccceEEEEEec--CCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEec
Q 021121          138 RPTSVRTFK-EHAYCVYNATWNP--RHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       138 ~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      +++.+..+. .|..+|.+++|+|  + ++++++++.||.|++||+++++...... .+...+.+++|+| ++.+|++|+.
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~  190 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSP  190 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECT
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcC
Confidence            444444443 5668899999999  8 8999999999999999999988866553 3555799999999 9999999999


Q ss_pred             CCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--eeeeecccceeE--eEEE
Q 021121          214 DKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--VGRYDHHTEFAV--GVDM  288 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~--~~~~  288 (317)
                      |+.|++||+++++.....+.. |..+|++++|+|++. +|++++ |+.|++||+++.+..  +..+..|...+.  +++|
T Consensus       191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T 3lrv_A          191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI  268 (343)
T ss_dssp             TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred             CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence            999999999998764367777 999999999999998 688888 559999999987633  222223444444  5999


Q ss_pred             EeccCCeEEEeec-CCcEEEEecCCCC
Q 021121          289 SVLVEGLLASTGW-DELVYVWQQGMDP  314 (317)
Q Consensus       289 ~~~~~~~l~s~~~-dg~i~~w~~~~~~  314 (317)
                      +|+ +.+|++++. |+.+++|++....
T Consensus       269 ~~~-g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          269 DDS-GKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CTT-SSEEEEEETTTTEEEEEEECTTT
T ss_pred             CCC-CCEEEEecCCCCcEEEEEEcccc
Confidence            998 889999888 9999999996643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=236.89  Aligned_cols=247  Identities=18%  Similarity=0.267  Sum_probs=202.2

Q ss_pred             cCCCCeeEEEecCCC--CCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           58 DTADGVYDLAWSESH--DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                      .|.+.|++++|+|++  ..+|++|+.||.|++||+... .......+..|...|.+++|+|++. +|++++.||.|++||
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCDKTAKMWD  114 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCC-EEEEEcCCCcEEEEE
Confidence            789999999999984  369999999999999999862 1223366788999999999999988 999999999999999


Q ss_pred             cCCCceeEEeeccccceEEEEE--ecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          136 VDRPTSVRTFKEHAYCVYNATW--NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      +++++... +..|...|.+++|  +|+ +.++++++.||.|++||+++++.+..+..+. .+.++.+.+   ..+++++.
T Consensus       115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~  188 (368)
T 3mmy_A          115 LSSNQAIQ-IAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY---PMAVVATA  188 (368)
T ss_dssp             TTTTEEEE-EEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET---TEEEEEEG
T ss_pred             cCCCCcee-eccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC---CeeEEEeC
Confidence            99887766 4569999999999  777 7889999999999999999999888887654 566666654   47888889


Q ss_pred             CCcEEEEEccCCCccEEEEe-cCCCceeEEEecCCCC---eeEEeeecCCeEEEEeccccc--ceeeeeecccc------
Q 021121          214 DKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSPHRR---NLLASCSYDMTVCLWDFMVED--ALVGRYDHHTE------  281 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~------  281 (317)
                      ++.+++||++.......... .+...+.++.+.++..   ..+++++.||.|++||++...  .....+..|..      
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence            99999999987654333332 2344566666665544   139999999999999998763  24456666665      


Q ss_pred             ------eeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          282 ------FAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       282 ------~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                            .|++++|+|+ +.+|++++.||.|++||+...
T Consensus       269 ~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             CCEEECCEEEEEECTT-TCCEEEEETTSCEEEEETTTT
T ss_pred             ccccccceEEEEEecC-CCEEEEEccCCeEEEEECCCC
Confidence                  7999999998 789999999999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-35  Score=246.78  Aligned_cols=256  Identities=13%  Similarity=0.122  Sum_probs=199.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |+..|++++|+|+  +       .      ++.+.+|+.+...     +....+...|.+++|+|+| .+||+++.||.|
T Consensus        51 h~~~v~~V~FsPd--g-------~------~~~~~~~~~~~~~-----~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V  109 (588)
T 2j04_A           51 NSKNLFHVKEFPL--E-------F------ENKLDFELAQQNG-----LLNSQPVCYPRVCKPSPID-DWMAVLSNNGNV  109 (588)
T ss_dssp             BGGGTEEEEEECC--C-------C------CCTTTTSCCCSSC-----SSTTSCSCCEEEEEECSSS-SCEEEEETTSCE
T ss_pred             CCccEEEEEECCC--C-------C------cceEEEEeCCCce-----EeecCCCCcEEEEEECCCC-CEEEEEeCCCcE
Confidence            6788999999994  4       2      5566666644222     2222457789999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCc-----ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-------eEEe----eccc
Q 021121           86 KIYDTALPPTANPIRSLHEHTR-----EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-------VRTF----KEHA  149 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~----~~~~  149 (317)
                      ++||.+     ..+..+. |..     .+.+++|+|+|+ +|++|+.||+|++||+.++..       +..+    .+|.
T Consensus       110 ~iwd~~-----~~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~  182 (588)
T 2j04_A          110 SVFKDN-----KMLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK  182 (588)
T ss_dssp             EEEETT-----EEEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC
T ss_pred             EEEeCC-----ceeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc
Confidence            999943     2444555 555     599999999998 999999999999999998753       5665    5677


Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce---eee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST---MII-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY  225 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~  225 (317)
                      ..|.+++|+|+ +  +++++.|+.|++||+.+++..   ..+ ..|...|.+++|+   ++.+++++ +++|++||+.+.
T Consensus       183 ~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          183 DWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             CCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTT
T ss_pred             ccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCC
Confidence            89999999998 5  778999999999999887642   455 4788899999998   47888887 699999999876


Q ss_pred             CccEEEEecCCCceeEEEe--cCCCCeeEEeeecCCeEEEEeccc-----cc-----------------ceeeeeecccc
Q 021121          226 RVPIAVLNGHGYAVRKVKF--SPHRRNLLASCSYDMTVCLWDFMV-----ED-----------------ALVGRYDHHTE  281 (317)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~vwd~~~-----~~-----------------~~~~~~~~~~~  281 (317)
                      +. .....+|...|..++|  +|++. .|++++.||+ ++|....     ..                 .....+.+ ..
T Consensus       256 ~~-~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~  331 (588)
T 2j04_A          256 SI-SSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TL  331 (588)
T ss_dssp             EE-EEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EE
T ss_pred             eE-EEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ce
Confidence            53 2333389999999999  99997 6999999999 9998631     10                 11223333 56


Q ss_pred             eeEeEEEEeccCCeEEEeec
Q 021121          282 FAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~~~  301 (317)
                      .|++++|+|+ ++.+|+++.
T Consensus       332 ~I~~va~SPd-G~~lA~~~~  350 (588)
T 2j04_A          332 VIHGISLSPD-GYSIAIVYD  350 (588)
T ss_dssp             EEEEEEECTT-SSEEEEEEE
T ss_pred             EEEEEEECCC-CCEEEEEEe
Confidence            7999999999 788988873

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.6e-34  Score=235.39  Aligned_cols=236  Identities=14%  Similarity=0.127  Sum_probs=186.4

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      ..|...|++++|+|++ .+|++|+.++ +++|++...   ......  +...+..+++.++++.++++++.|+.|++||+
T Consensus        16 ~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ---CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            3688999999999998 5888888765 789998753   332222  22357778888887744477888999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC-CceeeeccCccceEEEEecCCCCcEEEE--Eec
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMIIPAHEFEILACDWNKYDDCLIAS--ASV  213 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~--~~~  213 (317)
                      .+++.+..+. +...|.+++++++   .++++ .++.|++||++++ +.+..+..   +...+++++   .++++  |+.
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~sg~~  157 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN---GLLVYSNEFN  157 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET---TEEEEEESSC
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc---cEEEEeCCCc
Confidence            9999988887 6678999999875   34343 4789999999988 66666554   444556665   45555  689


Q ss_pred             CCcEEEEEccCCC--------------cc-EEEEecCCCceeEEEecCCCCeeEEeeecCCe-EEEEecccccceeeeee
Q 021121          214 DKSIKIWDVRNYR--------------VP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT-VCLWDFMVEDALVGRYD  277 (317)
Q Consensus       214 d~~i~v~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~  277 (317)
                      +|.|++||+++.+              .+ +..+.+|...|++++|+|+++ +|++++.|++ |++||+++++ .+..+.
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~-~~~~~~  235 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGV-LVREFR  235 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCC-EEEEEE
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCc-EEEEEE
Confidence            9999999998754              12 677889999999999999998 7999999998 9999999887 455666


Q ss_pred             -c-ccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          278 -H-HTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       278 -~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       + |...|.+++|+|+ +.+|++++.|+.|++||+...
T Consensus       236 ~g~h~~~v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          236 RGLDRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CTTCCSCEEEEEECTT-SCEEEEEETTCEEEEEESSCC
T ss_pred             cCCCCCcEEEEEECCC-CCEEEEEECCCEEEEEEccCC
Confidence             5 9999999999999 889999999999999999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.4e-33  Score=239.42  Aligned_cols=293  Identities=11%  Similarity=0.050  Sum_probs=223.5

Q ss_pred             CcceeEEE---EecCCCCeEEEEEeccc-------ccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeE
Q 021121            7 PFNGYSVK---FSPFYESRLAVATAQNF-------GILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLL   76 (317)
Q Consensus         7 ~~~v~~~~---~~p~~~~~~~~~~~~~~-------~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l   76 (317)
                      ...++.++   |+|+ ...++++....+       ....++.+.+|.++........+..+.....+.+++|+|+ ..++
T Consensus        60 ~~g~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~  137 (433)
T 3bws_A           60 NIALVEMAIPVYKDE-KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDN-TRLA  137 (433)
T ss_dssp             TEEEEEEEEECCCTT-CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSS-SEEE
T ss_pred             CCccEEEEEeeccCC-CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCC-CeEE
Confidence            34567788   8885 333333332221       1122444455655543323445555556667889999995 4688


Q ss_pred             EEEEcCCeEEEEEeCCCCCCCCce-----eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccc
Q 021121           77 IAAVADGSVKIYDTALPPTANPIR-----SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC  151 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  151 (317)
                      ++++.++.|++||+..+   +...     .+..|...|.+++|++++. ++++++.|+.|++||+++++.+..+..|...
T Consensus       138 ~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSG---QTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             EEBTTSSSEEEEETTTC---CEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred             EEeCCCCeEEEEECCCC---eEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence            88888899999998865   3333     3457889999999999887 9999999999999999999999999888899


Q ss_pred             eEEEEEecCCCCeE-EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe--------cCCcEEEEEc
Q 021121          152 VYNATWNPRHSDVF-CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS--------VDKSIKIWDV  222 (317)
Q Consensus       152 v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--------~d~~i~v~d~  222 (317)
                      +.+++|+|+ +..+ ++++.++.|++||+++++.+..+.. ...+.+++|+| +++.+++++        .|+.|++||+
T Consensus       214 ~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          214 SKILLYDPI-RDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             EEEEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             eeEEEEcCC-CCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEEC
Confidence            999999999 5555 5666899999999999888777765 44589999999 888888887        4889999999


Q ss_pred             cCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec-
Q 021121          223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW-  301 (317)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-  301 (317)
                      ++.+. ... ..|...+.+++|+|+++.++++++.|+.|++||+.+++ ....+. +...+.+++|+|+ +++|++++. 
T Consensus       291 ~~~~~-~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-~~~~~~-~~~~~~~~~~s~d-g~~l~~~~~~  365 (433)
T 3bws_A          291 DKEKL-IDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-VQKSIP-VFDKPNTIALSPD-GKYLYVSCRG  365 (433)
T ss_dssp             TTTEE-EEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTT-SSEEEEEECC
T ss_pred             CCCcE-Eee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-EEEEec-CCCCCCeEEEcCC-CCEEEEEecC
Confidence            87653 333 34556889999999998777888999999999999776 444444 5677999999999 677777665 


Q ss_pred             --------------CCcEEEEecCCC
Q 021121          302 --------------DELVYVWQQGMD  313 (317)
Q Consensus       302 --------------dg~i~~w~~~~~  313 (317)
                                    ||.|++||+...
T Consensus       366 ~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          366 PNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             CCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             CCccccccccccccceEEEEEECCCC
Confidence                          579999998764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.4e-32  Score=230.08  Aligned_cols=288  Identities=12%  Similarity=0.144  Sum_probs=217.5

Q ss_pred             eecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            4 FKTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      +.....+.+++|+|  ++. +++++..      ++.|++||+....    .+..+.+...+.+++|+|+++.++++++.+
T Consensus        28 ~~~~~~~~~~~~s~--dg~~l~~~~~~------d~~i~v~d~~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~~~~~   95 (391)
T 1l0q_A           28 IPVGSNPMGAVISP--DGTKVYVANAH------SNDVSIIDTATNN----VIATVPAGSSPQGVAVSPDGKQVYVTNMAS   95 (391)
T ss_dssp             EECSSSEEEEEECT--TSSEEEEEEGG------GTEEEEEETTTTE----EEEEEECSSSEEEEEECTTSSEEEEEETTT
T ss_pred             eecCCCcceEEECC--CCCEEEEECCC------CCeEEEEECCCCe----EEEEEECCCCccceEECCCCCEEEEEECCC
Confidence            44566789999999  454 4455544      8999999997654    233445555899999999985444566677


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      +.|++||+..+   +....+.. ...+.+++|+|+++.++++++.++.|++||+.+++.+..+..+ ..+.+++|+|++.
T Consensus        96 ~~v~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~  170 (391)
T 1l0q_A           96 STLSVIDTTSN---TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT  170 (391)
T ss_dssp             TEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS
T ss_pred             CEEEEEECCCC---eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCC
Confidence            99999999865   45555544 4578999999999844478888999999999999888888755 4579999999944


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCccEEEEecCCCce
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      .++++++.++.|++||+++++....+. +...+.+++|+| +++++++++   .++.|++||+++.+ .+..+..+. .+
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~  246 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPVGP-DP  246 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTE-EEEEEECCS-SE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCe-EEEEEecCC-Cc
Confidence            444778889999999999987777665 456789999999 888888877   68999999998865 366666655 57


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccccee---------------EeEEEEecc-------C--Ce
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFA---------------VGVDMSVLV-------E--GL  295 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~-------~--~~  295 (317)
                      .+++|+|+++.++++++.|+.|++||+.+++ +...+..|..+.               ....|+.+.       .  ..
T Consensus       247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~  325 (391)
T 1l0q_A          247 AGIAVTPDGKKVYVALSFXNTVSVIDTATNT-ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ  325 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred             cEEEEccCCCEEEEEcCCCCEEEEEECCCCc-EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence            8999999999666788899999999999876 445555443332               112233321       1  34


Q ss_pred             EEEeecCCcEEEEecCCC
Q 021121          296 LASTGWDELVYVWQQGMD  313 (317)
Q Consensus       296 l~s~~~dg~i~~w~~~~~  313 (317)
                      +...+.|..+++|++..+
T Consensus       326 ~~~~~~~~~~~~W~~~~g  343 (391)
T 1l0q_A          326 FTDLSKDATEWKWDFGDG  343 (391)
T ss_dssp             EEECCBSCSEEEEECSSS
T ss_pred             EEeCCCCceEEEEECCCC
Confidence            667778999999999654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.6e-33  Score=219.72  Aligned_cols=264  Identities=11%  Similarity=0.071  Sum_probs=189.3

Q ss_pred             CceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeEE-EEEeCCCCC---CCCceeeccCCcceE
Q 021121           36 NGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSVK-IYDTALPPT---ANPIRSLHEHTREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~-v~~~~~~~~---~~~~~~~~~~~~~v~  110 (317)
                      ...|++|+..... ..+.+..+ .|..+|..+.+.|+..+++.++-.+=.+. ++-+.-...   ........+|...|.
T Consensus        62 ~~~v~lw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~  140 (356)
T 2w18_A           62 EDVVSLWKALDAW-QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL  140 (356)
T ss_dssp             SSEEEEEEESSSS-BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCc-cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence            6799999998863 34455554 46668999999998766766665443222 222222111   112222234555555


Q ss_pred             EEEEecCCCCEEEEEc--CCCEEEEEEc-CCCceeEEeeccccceEEEEEec--CCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121          111 SADYNPTRRDSFITSS--WDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNP--RHSDVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~--~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      .+   ++++ ++.+++  .|+.|++|++ .+++.+..+..|...+..++|+|  .++.+|++++.|++|++||+++++.+
T Consensus       141 ~l---~~g~-lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l  216 (356)
T 2w18_A          141 GL---TKRR-LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL  216 (356)
T ss_dssp             EE---TTTE-EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ec---CCCc-EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence            54   4554 555533  5999999999 45888888889999999999998  22789999999999999999999999


Q ss_pred             eeeccCcc---ceEEEEecCCCCcEE------------EEEecCCcEEEEEccCCCccEEEE-----ecCCCceeEEEec
Q 021121          186 MIIPAHEF---EILACDWNKYDDCLI------------ASASVDKSIKIWDVRNYRVPIAVL-----NGHGYAVRKVKFS  245 (317)
Q Consensus       186 ~~~~~~~~---~v~~i~~~~~~~~~l------------~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~v~~~~~~  245 (317)
                      ..+.+|..   .+.+++|+| ++.++            ++|+.|++|++||..+++. +..+     .+|...+.+..++
T Consensus       217 ~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s  294 (356)
T 2w18_A          217 KKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK  294 (356)
T ss_dssp             EEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE
T ss_pred             EEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC
Confidence            99976543   567779999 88876            5678899999999988653 3333     3565555444444


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE-eEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV-GVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                        +. ++++++.|++|+|||+.+++ ++..+.+|...+. .++|+|+ +++|++|+.|++|+|||+.
T Consensus       295 --g~-~lASgS~DgTIkIWDl~tGk-~l~tL~gH~~~vvs~vafSPD-G~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          295 --DH-CAAAILTSGTIAIWDLLLGQ-CTALLPPVSDQHWSFVKWSGT-DSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             --TT-EEEEEETTSCEEEEETTTCS-EEEEECCC--CCCCEEEECSS-SSEEEEECTTSCEEEEEEC
T ss_pred             --CC-EEEEEcCCCcEEEEECCCCc-EEEEecCCCCCeEEEEEECCC-CCEEEEEECCCcEEEecCC
Confidence              55 79999999999999999987 6678888877665 5899999 8999999999999999963

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=223.37  Aligned_cols=244  Identities=21%  Similarity=0.360  Sum_probs=199.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|+|  ++.++++++.      ||.|++|++..... .  .....|...+.++.+.  + .++++++.++.+
T Consensus        66 ~~~~V~~v~~~~--~~~~l~sgs~------Dg~v~iw~~~~~~~-~--~~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~  131 (318)
T 4ggc_A           66 PGEYISSVAWIK--EGNYLAVGTS------SAEVQLWDVQQQKR-L--RNMTSHSARVGSLSWN--S-YILSSGSRSGHI  131 (318)
T ss_dssp             TTCCEEEEEECT--TSSEEEEEET------TSEEEEEETTTTEE-E--EEEECCSSCEEEEEEE--T-TEEEEEETTSEE
T ss_pred             CCCeEEEEEECC--CCCEEEEEEC------CCcEEEeecCCcee-E--EEecCccceEEEeecC--C-CEEEEEecCCce
Confidence            567799999999  6677777775      99999999987642 1  2223677777766655  3 589999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce----eEEeeccccceEEEEEecCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ++|+....  ......+.+|...+..+.+.+++. ++++++.||.|++||+++++.    ......+.+.|.++.++|.+
T Consensus       132 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  208 (318)
T 4ggc_A          132 HHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ  208 (318)
T ss_dssp             EEEETTSS--SCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS
T ss_pred             EeeecCCC--ceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC
Confidence            99998754  345567788999999999999998 999999999999999987653    34555678889999999986


Q ss_pred             CCeEE--EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe--cCCcEEEEEccCCCccEEEEecCCC
Q 021121          162 SDVFC--SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS--VDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       162 ~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      ..++.  +++.++.|++||.+......... +...+..+.|+| .+..+++++  .|+.|++||+++++ ++..+.+|..
T Consensus       209 ~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~gH~~  285 (318)
T 4ggc_A          209 SNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTS  285 (318)
T ss_dssp             TTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCC-EEEEECCCSS
T ss_pred             CcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCc-EEEEEcCCCC
Confidence            66654  56678999999998877666554 667899999999 666666544  78999999999876 5888999999


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .|++++|+|+++ +|++|+.||+|+|||+.+..
T Consensus       286 ~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          286 RVLSLTMSPDGA-TVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CEEEEEECTTSS-CEEEEETTTEEEEECCSCCC
T ss_pred             CEEEEEEcCCCC-EEEEEecCCeEEEEECCCCC
Confidence            999999999998 79999999999999987643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.1e-34  Score=239.45  Aligned_cols=235  Identities=12%  Similarity=0.104  Sum_probs=168.9

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcce-eee-eecCCCCeeEEEecC--------CCCCeEEEEEcCCeEEEEE
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELV-AFDTADGVYDLAWSE--------SHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~i~v~~   89 (317)
                      .+.++++++.      |++|+|||......... .+. ..+|.+.|++++|+|        ++ ++|++|+.|++|+|||
T Consensus       100 ~~~~las~~~------d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A          100 YSLFLACVCQ------DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWR  172 (393)
T ss_dssp             EEEEEEEEET------TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEeC------CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEE
Confidence            3456666665      99999999987642111 111 236899999999997        55 6999999999999999


Q ss_pred             eCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe------------------------
Q 021121           90 TALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF------------------------  145 (317)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~------------------------  145 (317)
                      +...   .+...+..|..+|.+++|+|++..+|++++.||.|++||+++++.....                        
T Consensus       173 ~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          173 LTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             EETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             CCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            9765   5666777899999999999998668999999999999999887543322                        


Q ss_pred             -eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEE------------------EecC-CCC
Q 021121          146 -KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC------------------DWNK-YDD  205 (317)
Q Consensus       146 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i------------------~~~~-~~~  205 (317)
                       .+|...+.++.|.+.++..+++++.|+.+++||+..++....+..+...+..+                  .++| .++
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD  329 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence             24667788999985448999999999999999998776655554443333322                  2332 244


Q ss_pred             cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          206 CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      .++++|+.||.|++||..+++. ......|..+|++++|+|+|+ +||+++.+| +.+|.+.
T Consensus       330 ~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          330 YFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEEG
T ss_pred             EEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEEe
Confidence            5677888999999999998765 566667888999999999999 699888665 6666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=7.5e-31  Score=208.62  Aligned_cols=244  Identities=14%  Similarity=0.133  Sum_probs=174.3

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc-ceeeeeecCCCCeeEEEecCCCCCeEEEEE--cC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA-LTELVAFDTADGVYDLAWSESHDSLLIAAV--AD   82 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d   82 (317)
                      +..+|..+.|.|+..+.+.++.++.    ..+.|+..-+.+.... .+.+..-++...|..+   +++ +++.+++  .|
T Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d  156 (356)
T 2w18_A           85 AEVPVLQIVPVPDVYNLVCVALGNL----EIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSD  156 (356)
T ss_dssp             CSSCEEEECCCTTCCSCEEEEECSS----SEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTT
T ss_pred             cCceeEEEEEcCcccceeeeeeccc----cccceEEEEECCCccccccEEEeCCCeEEEEec---CCC-cEEEecccCCC
Confidence            4568999999998888888887753    1223333333333111 1222222344445444   444 4555533  49


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEec---CCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc---cceEEEE
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNP---TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA---YCVYNAT  156 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~  156 (317)
                      +.|++|++...  .+.+..+..|...+..++|++   ++. +|++++.|++|++||++++++++++.+|.   ..+.+++
T Consensus       157 ~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va  233 (356)
T 2w18_A          157 QQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA  233 (356)
T ss_dssp             CEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred             CcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence            99999999642  356667778999999999998   556 99999999999999999999999998643   3677889


Q ss_pred             EecCCCCeE------------EEEeCCCeEEEEeCCCCCceeee-----ccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          157 WNPRHSDVF------------CSASGDCTLRIWDVREMGSTMII-----PAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       157 ~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      |+|+ +.++            ++|+.|++|++||..+++.+..+     .+|...+.+..+   ++.++++++.|++|++
T Consensus       234 fSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkI  309 (356)
T 2w18_A          234 YSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAI  309 (356)
T ss_dssp             EEET-TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEE
T ss_pred             ECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEE
Confidence            9998 6665            56889999999999988776554     245444443333   3678999999999999


Q ss_pred             EEccCCCccEEEEecCCCcee-EEEecCCCCeeEEeeecCCeEEEEec
Q 021121          220 WDVRNYRVPIAVLNGHGYAVR-KVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      ||+++++ .+..+.+|...+. +++|+|+++ +|++|+.|++|+|||+
T Consensus       310 WDl~tGk-~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          310 WDLLLGQ-CTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTTCS-EEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             EECCCCc-EEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence            9999977 4788888877655 589999999 7999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=9.4e-30  Score=214.22  Aligned_cols=285  Identities=8%  Similarity=0.048  Sum_probs=210.4

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCc----eEEEEec--CCCCCcceeeeeecCCCCeeEEEecC-----------
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNG----RVHVLDL--SPAAPALTELVAFDTADGVYDLAWSE-----------   70 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g----~i~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~-----------   70 (317)
                      ..+...+|++.+...++.+.-.   ...+|    .+++||+  .++. .+.......|...+..+++++           
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~---~~~~G~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~  138 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVT---PNPDGSYNVAYQLVDTGGAPGT-VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGI  138 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEE---ECTTSCEEEEEEEEECSSSTTC-EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred             cCcCHHHHHhcCCCEEEEEEEE---ECCCCeEEEEEEEEeCCCCCCC-EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence            3567788888643344343311   01267    8999999  6655 222233346777788777765           


Q ss_pred             ---CCCCeEEEEEcC------CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC---EEEEEEcCC
Q 021121           71 ---SHDSLLIAAVAD------GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD---TVKLWTVDR  138 (317)
Q Consensus        71 ---~~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~  138 (317)
                         .+ ..++.++.+      +.|++||++.    .....+..|...+.+++|+|+++ .|++++.++   .|++||+++
T Consensus       139 ~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g----~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~t  212 (415)
T 2hqs_A          139 KGAFR-TRIAYVVQTNGGQFPYELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLAN  212 (415)
T ss_dssp             CCCTT-CEEEEEEECSSSSCCEEEEEEETTS----CSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTT
T ss_pred             CCcCC-CEEEEEEecCCCCccceEEEEcCCC----CCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCC
Confidence               14 355555554      7999999863    34566778899999999999998 888888775   999999998


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEE-EEeCCCe--EEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-C
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCT--LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-D  214 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d  214 (317)
                      ++.. .+..+...+.+++|+|+ ++.|+ +++.++.  |++||+++++. ..+..+...+.+++|+| +++.|++++. +
T Consensus       213 g~~~-~l~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~  288 (415)
T 2hqs_A          213 GAVR-QVASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNLAFTSDQA  288 (415)
T ss_dssp             CCEE-EEECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEEEEEECTT
T ss_pred             CcEE-EeecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEEEEEECCC
Confidence            8775 45667888999999999 66555 6766654  99999988765 56667888899999999 8988888775 4


Q ss_pred             C--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC---CeEEEEecccccceeeeeecccceeEeEEEE
Q 021121          215 K--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD---MTVCLWDFMVEDALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       215 ~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  289 (317)
                      +  .|++||+.+.+  ...+..+...+.+++|+|+++ +|++++.+   ..|.+||+.+++.  ..+..+. .+.+++|+
T Consensus       289 g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~s  362 (415)
T 2hqs_A          289 GRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLA  362 (415)
T ss_dssp             SSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEEC
T ss_pred             CCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEc
Confidence            4  67778888755  345556777899999999999 46666553   5899999988763  3444554 78999999


Q ss_pred             eccCCeEEEeecCC---cEEEEecCCC
Q 021121          290 VLVEGLLASTGWDE---LVYVWQQGMD  313 (317)
Q Consensus       290 ~~~~~~l~s~~~dg---~i~~w~~~~~  313 (317)
                      |+ +++|++++.++   .|++||+...
T Consensus       363 pd-g~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          363 PN-GTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             TT-SSEEEEEEEETTEEEEEEEETTSC
T ss_pred             CC-CCEEEEEEcCCCccEEEEEECCCC
Confidence            99 77888777766   7999998754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.7e-28  Score=212.65  Aligned_cols=287  Identities=13%  Similarity=0.118  Sum_probs=215.3

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecC----CCCCeEEEEE-c
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE----SHDSLLIAAV-A   81 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~   81 (317)
                      ...+..++|+|  +++++++++.      ++.|.+||+....  ...+..+.+...+..++|+|    +++ ++++++ .
T Consensus       178 g~~~~~v~~sp--dg~~l~v~~~------d~~V~v~D~~~~t--~~~~~~i~~g~~p~~va~sp~~~~dg~-~l~v~~~~  246 (543)
T 1nir_A          178 GYAVHISRMSA--SGRYLLVIGR------DARIDMIDLWAKE--PTKVAEIKIGIEARSVESSKFKGYEDR-YTIAGAYW  246 (543)
T ss_dssp             STTEEEEEECT--TSCEEEEEET------TSEEEEEETTSSS--CEEEEEEECCSEEEEEEECCSTTCTTT-EEEEEEEE
T ss_pred             CcccceEEECC--CCCEEEEECC------CCeEEEEECcCCC--CcEEEEEecCCCcceEEeCCCcCCCCC-EEEEEEcc
Confidence            34588999999  6777777765      8999999993211  23344445667789999999    984 676666 5


Q ss_pred             CCeEEEEEeCCCCCCCCceeecc----------CC-cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE--Eeecc
Q 021121           82 DGSVKIYDTALPPTANPIRSLHE----------HT-REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR--TFKEH  148 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~  148 (317)
                      +++|.+||..+.   +++..+..          |. ..+..+.++|+++.++++...++.|.+||+.+.+.+.  .+. +
T Consensus       247 ~~~v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~  322 (543)
T 1nir_A          247 PPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A  322 (543)
T ss_dssp             SSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C
T ss_pred             CCeEEEEecccc---ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c
Confidence            899999998765   45544433          22 3789999999888788888999999999998876544  333 4


Q ss_pred             ccceEEEEEecCCCCeE-EEEeCCCeEEEEeCCCCCceeeecc----CccceEEEEecCCCCcEEEEEe-cCCcEEEEEc
Q 021121          149 AYCVYNATWNPRHSDVF-CSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDCLIASAS-VDKSIKIWDV  222 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~  222 (317)
                      ...+..+.|+|+ ++++ +++..+++|.+||+.+++.+..+..    |......+ ++|..+.+++++. .|++|.+||+
T Consensus       323 ~~~~~~~~~spd-g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          323 APFLHDGGWDSS-HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CSSCCCEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CcCccCceECCC-CCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            566889999999 6655 4555689999999999988777763    43333333 4673477777775 5799999999


Q ss_pred             cC-------CCccEEEEecCCCceeEEEecCCCCeeEEeee-------cCCeEEEEecccccceeeee--------eccc
Q 021121          223 RN-------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-------YDMTVCLWDFMVEDALVGRY--------DHHT  280 (317)
Q Consensus       223 ~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~vwd~~~~~~~~~~~--------~~~~  280 (317)
                      .+       .+ .+..+..|...+..++++|+++ .|++++       .+++|.+||+.+.+.....+        ..+.
T Consensus       401 ~~~~~~~~~~~-~v~~l~~~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~  478 (543)
T 1nir_A          401 DPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA  478 (543)
T ss_dssp             CTTTCTTTBTS-EEEEEECSCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred             CCCCCchhcCe-EEEEEEcCCCCceEEEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence            87       44 5788888988889999999999 577766       37799999999887543333        3456


Q ss_pred             ceeEeEEEEeccCCeEEEe-----ecCCcEEEEecCCC
Q 021121          281 EFAVGVDMSVLVEGLLAST-----GWDELVYVWQQGMD  313 (317)
Q Consensus       281 ~~v~~~~~~~~~~~~l~s~-----~~dg~i~~w~~~~~  313 (317)
                      ..+..+.|+|+ ++.++.+     +.|+.|.|||..+.
T Consensus       479 ~~~~~~~~~~~-g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          479 KRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             CEEEEEEECSS-SSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CceEeccCCCC-CCEEEEEeecCCCCCCeEEEEECCCc
Confidence            78999999999 5555543     24799999998875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.5e-28  Score=211.66  Aligned_cols=278  Identities=12%  Similarity=0.110  Sum_probs=214.4

Q ss_pred             EEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEe--C
Q 021121           14 KFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDT--A   91 (317)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~--~   91 (317)
                      .|+|  ++.++++...      ++.|.+||.....    .+..+.....+..++|+|++ ++|++++.++.|++||+  .
T Consensus       144 ~~~p--~~~~~vs~~~------d~~V~v~D~~t~~----~~~~i~~g~~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~  210 (543)
T 1nir_A          144 DLDL--PNLFSVTLRD------AGQIALVDGDSKK----IVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAK  210 (543)
T ss_dssp             CCCG--GGEEEEEEGG------GTEEEEEETTTCC----EEEEEECSTTEEEEEECTTS-CEEEEEETTSEEEEEETTSS
T ss_pred             ccCC--CCEEEEEEcC------CCeEEEEECCCce----EEEEEecCcccceEEECCCC-CEEEEECCCCeEEEEECcCC
Confidence            4888  6788888775      8999999988765    22333322338999999998 59999999999999999  4


Q ss_pred             CCCCCCCceeeccCCcceEEEEEec----CCCCEEEEEc-CCCEEEEEEcCCCceeEEeecc-----------ccceEEE
Q 021121           92 LPPTANPIRSLHEHTREVHSADYNP----TRRDSFITSS-WDDTVKLWTVDRPTSVRTFKEH-----------AYCVYNA  155 (317)
Q Consensus        92 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-----------~~~v~~~  155 (317)
                      +.   +.+..+. +...+..++|+|    +++ ++++++ .+++|.+||..+++++..+..+           ...+..+
T Consensus       211 t~---~~~~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i  285 (543)
T 1nir_A          211 EP---TKVAEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  285 (543)
T ss_dssp             SC---EEEEEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             CC---cEEEEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence            43   5555555 455679999999    998 777776 5899999999999988887642           2268999


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEE-ecCCcEEEEEccCCCccEEEE
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASA-SVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      .++|++..++++...++.|.+||..+.+.+.  .+. +...+..+.|+| ++++++++ ..+++|.+||..+++. +..+
T Consensus       286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l-~~~i  362 (543)
T 1nir_A          286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRL-SALV  362 (543)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEE-EEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeE-EEee
Confidence            9999877788888899999999998876544  333 456678899999 88866554 5688999999998763 5555


Q ss_pred             ec----CCCceeEEEecCCCCeeEEeee-cCCeEEEEecccc------cceeeeeecccceeEeEEEEeccCCeEEEee-
Q 021121          233 NG----HGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVE------DALVGRYDHHTEFAVGVDMSVLVEGLLASTG-  300 (317)
Q Consensus       233 ~~----~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-  300 (317)
                      ..    |......+ ++|++..+++++. .|++|.+||+.+.      -.+++.+..|...+..+.++|+ ++.|++++ 
T Consensus       363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd-g~~l~v~~~  440 (543)
T 1nir_A          363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK-SSHLYVDTT  440 (543)
T ss_dssp             ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT-CCEEEECCT
T ss_pred             ccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC-CCcEEEecC
Confidence            53    54333333 4787555777775 6899999999872      2477888899888899999999 78888887 


Q ss_pred             ------cCCcEEEEecCCCC
Q 021121          301 ------WDELVYVWQQGMDP  314 (317)
Q Consensus       301 ------~dg~i~~w~~~~~~  314 (317)
                            .+++|.+||+.+..
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTT
T ss_pred             CCCCcccCceEEEEECCCCC
Confidence                  37899999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.97  E-value=4.6e-28  Score=198.90  Aligned_cols=269  Identities=13%  Similarity=0.121  Sum_probs=186.1

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-CeEEEEEeCCC-CCCCCceeeccCCcceEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-GSVKIYDTALP-PTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~v~~~~~~-~~~~~~~~~~~~~~~v~~~~  113 (317)
                      ++.|++|+++... ....+....+...+.+++|+|++ .+|++++.+ +.|.+|++... .....+..+..+. .+..++
T Consensus        14 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   90 (343)
T 1ri6_A           14 SQQIHVWNLNHEG-ALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS   90 (343)
T ss_dssp             GTEEEEEEECTTS-CEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred             CCeEEEEEECCCC-cEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence            8999999997532 24445556778889999999998 467777765 99999999722 1222333444333 788999


Q ss_pred             EecCCCCEEEEEcCCCEEEEEEcC---CCceeEEeeccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCC-CCcee--
Q 021121          114 YNPTRRDSFITSSWDDTVKLWTVD---RPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVRE-MGSTM--  186 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~--  186 (317)
                      |+|+++.+++++..++.|.+||+.   ..+....+.. ...+.+++|+|+ ++.+++++ .++.|.+||+.+ ++...  
T Consensus        91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~  168 (343)
T 1ri6_A           91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQD  168 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeec
Confidence            999998333445568999999994   3334444443 345889999999 66666665 899999999987 44322  


Q ss_pred             --eec-cCccceEEEEecCCCCcEEE-EEecCCcEEEEEccC--CCcc-EEEEec---C---CCceeEEEecCCCCeeEE
Q 021121          187 --IIP-AHEFEILACDWNKYDDCLIA-SASVDKSIKIWDVRN--YRVP-IAVLNG---H---GYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       187 --~~~-~~~~~v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~--~~~~-~~~~~~---~---~~~v~~~~~~~~~~~~l~  253 (317)
                        ... .....+..++|+| ++++++ ++..++.|.+||+..  ++.. ......   .   ...+..++|+|+++.+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          169 PAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             EEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             ccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence              222 2334678899999 787655 445789999999964  2211 122221   1   235668999999986555


Q ss_pred             eeecCCeEEEEeccc--cc-ceeeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCC
Q 021121          254 SCSYDMTVCLWDFMV--ED-ALVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGM  312 (317)
Q Consensus       254 ~~~~d~~i~vwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~  312 (317)
                      +...++.|.+||+..  +. ..+..+..+.. +..++|+|+ +++|++++ .++.|.+|+++.
T Consensus       248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d-g~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS-GKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT-SSEEEEECTTTCEEEEEEEET
T ss_pred             EecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC-CCEEEEecCCCCeEEEEEEcC
Confidence            666899999999983  22 23334444444 889999999 66666665 689999997753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=1.7e-27  Score=194.83  Aligned_cols=281  Identities=12%  Similarity=0.123  Sum_probs=193.7

Q ss_pred             EEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC
Q 021121           14 KFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALP   93 (317)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~   93 (317)
                      .|.++ .+.++++...      ++.|.+||.....  ...... .+...+ .++|+|+++.+++++..++.|.+||+..+
T Consensus         4 ~~~~~-~~~~~v~~~~------~~~v~~~d~~~~~--~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~   72 (331)
T 3u4y_A            4 MFQTT-SNFGIVVEQH------LRRISFFSTDTLE--ILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE   72 (331)
T ss_dssp             ---CC-CCEEEEEEGG------GTEEEEEETTTCC--EEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred             eEcCC-CCEEEEEecC------CCeEEEEeCcccc--eeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence            45554 4555565554      8999999998765  222222 234455 99999998544445555899999999865


Q ss_pred             CCCCC-ceeeccCCcceEEEEEecCCCCEEEEEcCCC---EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe
Q 021121           94 PTANP-IRSLHEHTREVHSADYNPTRRDSFITSSWDD---TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus        94 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (317)
                         +. ...+..+..+..+++|+|+++ +++++..++   .|.+||+++++.+..+..+ ..+.+++|+|++..++++..
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           73 ---PPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             ---SCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEE
T ss_pred             ---ceeEEecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEec
Confidence               44 555555666666699999998 777555553   9999999999888877644 45799999999445666666


Q ss_pred             CCCe-EEEEeCCCCCcee----eeccCccceEEEEecCCCCcEE-EEEecCCcEEEEEccCCCcc--EEEEecCCCceeE
Q 021121          170 GDCT-LRIWDVREMGSTM----IIPAHEFEILACDWNKYDDCLI-ASASVDKSIKIWDVRNYRVP--IAVLNGHGYAVRK  241 (317)
Q Consensus       170 ~dg~-i~i~d~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~v~~  241 (317)
                      .++. |.+|++.....+.    ........+..++|+| +++++ +++..++.|++||+.+++..  +..+. ....+..
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~  225 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGT  225 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCC
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCce
Confidence            7688 9999988654332    1112345578999999 88754 55556889999999876631  44444 3456789


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccc-eeeeeecc----cc---eeEeEEEEeccCCeE-EEeecCCcEEEEecCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDA-LVGRYDHH----TE---FAVGVDMSVLVEGLL-ASTGWDELVYVWQQGM  312 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~----~~---~v~~~~~~~~~~~~l-~s~~~dg~i~~w~~~~  312 (317)
                      ++|+|+++.++++...++.|.+||+.+++. .+..+..+    ..   ....++|+|+ +++| +++..++.|.+|++..
T Consensus       226 ~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          226 IVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT-ETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT-SSEEEEEETTTTEEEEEETTS
T ss_pred             EEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC-CCEEEEecCCCCcEEEEEecC
Confidence            999999996555555678899999988762 12222211    22   2255899999 5555 5566678999999976


Q ss_pred             C
Q 021121          313 D  313 (317)
Q Consensus       313 ~  313 (317)
                      .
T Consensus       305 ~  305 (331)
T 3u4y_A          305 K  305 (331)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=3.2e-27  Score=198.76  Aligned_cols=235  Identities=14%  Similarity=0.078  Sum_probs=184.2

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC---eEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG---SVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      +.|++||++...  ...+  ..|...+.+++|+|++ ..|++++.++   .|++||+.++   +. ..+..|...+.+++
T Consensus       159 ~~i~i~d~~g~~--~~~l--~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg---~~-~~l~~~~~~~~~~~  229 (415)
T 2hqs_A          159 YELRVSDYDGYN--QFVV--HRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANG---AV-RQVASFPRHNGAPA  229 (415)
T ss_dssp             EEEEEEETTSCS--CEEE--EEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTC---CE-EEEECCSSCEEEEE
T ss_pred             ceEEEEcCCCCC--CEEE--eCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCC---cE-EEeecCCCcccCEE
Confidence            799999997543  2223  3577889999999998 5888888775   9999999865   32 34667888999999


Q ss_pred             EecCCCCEEE-EEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC-CC--eEEEEeCCCCCceee
Q 021121          114 YNPTRRDSFI-TSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DC--TLRIWDVREMGSTMI  187 (317)
Q Consensus       114 ~~~~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~  187 (317)
                      |+|+++ .|+ +++.++  .|++||+.+++. ..+..+...+.+++|+|+ ++.|++++. ++  .|++||+.+++. ..
T Consensus       230 ~spdg~-~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~-~~  305 (415)
T 2hqs_A          230 FSPDGS-KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAP-QR  305 (415)
T ss_dssp             ECTTSS-EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCC-EE
T ss_pred             EcCCCC-EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCE-EE
Confidence            999998 555 776655  499999988765 566678888999999999 777776665 45  688889887764 34


Q ss_pred             eccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC---eE
Q 021121          188 IPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM---TV  261 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i  261 (317)
                      +..+...+.+++|+| ++++|++++.+   ..|++||+.+++.  ..+..+. .+.+++|+|+++ +|++++.++   .|
T Consensus       306 l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          306 ITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGT-MVIYSSSQGMGSVL  380 (415)
T ss_dssp             CCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSS-EEEEEEEETTEEEE
T ss_pred             EecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCC-EEEEEEcCCCccEE
Confidence            455667889999999 89988888764   5899999988653  4555554 889999999999 566666665   79


Q ss_pred             EEEecccccceeeeeecccceeEeEEEEec
Q 021121          262 CLWDFMVEDALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       262 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .+||+...  ....+..|.+.|.+++|+|.
T Consensus       381 ~~~d~~g~--~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          381 NLVSTDGR--FKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             EEEETTSC--CEEECCCSSSEEEEEEECCC
T ss_pred             EEEECCCC--cEEEeeCCCCCCcCCccccc
Confidence            99998754  35678889999999999996

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.97  E-value=4.7e-27  Score=193.75  Aligned_cols=280  Identities=13%  Similarity=0.073  Sum_probs=202.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ....+..++|+|+ .+.++++.........++.|.+||.....    ....+.....+..++|+|++..++++...++.|
T Consensus        39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLE----VTQAIHNDLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCC----EEEEEEESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCe----EEEEEecCCCcceEEECCCCCEEEEEecCCCEE
Confidence            4456789999995 34455544321111126799999998764    223333445688999999986456666668999


Q ss_pred             EEEEeCCCCCCCCceeeccCCc---------ceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCCceeEEeeccccceEE
Q 021121           86 KIYDTALPPTANPIRSLHEHTR---------EVHSADYNPTRRDSFITSS--WDDTVKLWTVDRPTSVRTFKEHAYCVYN  154 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~  154 (317)
                      .+||..++   +....+..+..         .+.+++|+|+++ .+++++  .++.|.+||+++++....+..+...+.+
T Consensus       114 ~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          114 TAIDAKTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             EEEETTTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             EEEeCCCC---eeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            99998766   44444443322         278899999998 555544  5889999999999888888756666899


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc----CccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccE
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPI  229 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~  229 (317)
                      ++|+|+ ++.+++++.++.|.+||+.+++....+..    +...+..++|+| +++.+++++ .++.|.+||..+++. +
T Consensus       190 ~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~-~  266 (353)
T 3vgz_A          190 LALDSE-GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNI-L  266 (353)
T ss_dssp             CEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCE-E
T ss_pred             EEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcE-E
Confidence            999999 78888888999999999999887776653    445678899999 777665555 458999999988764 4


Q ss_pred             EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121          230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      ..+....  ...++|+|+++.++++...++.|.+||..+++ ....+.. ...+.+++|+|+ +++|+.+..+
T Consensus       267 ~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~-~~~~~~~~~s~d-g~~l~v~~~~  334 (353)
T 3vgz_A          267 AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK-VVKTFDT-PTHPNSLALSAD-GKTLYVSVKQ  334 (353)
T ss_dssp             EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEEEEC-CSEEEEEEECTT-SCEEEEEEEC
T ss_pred             EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCe-EEEEEec-CCCCCeEEEcCC-CCEEEEEEcc
Confidence            5554333  25799999999656666679999999998876 4444444 346799999999 6655554444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=9.3e-28  Score=216.86  Aligned_cols=286  Identities=11%  Similarity=0.103  Sum_probs=205.8

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCc-----eEEEEecCCCCCcceeeeee-cCC--------------------
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNG-----RVHVLDLSPAAPALTELVAF-DTA--------------------   60 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g-----~i~i~~~~~~~~~~~~~~~~-~~~--------------------   60 (317)
                      ...+.+++|||  +++.++..+..     +|     .|++||+....  ...+... .+.                    
T Consensus        36 ~~~~~~~~~Sp--dG~~la~~~~~-----d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (741)
T 2ecf_A           36 GPTLMKPKVAP--DGSRVTFLRGK-----DSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRERQRIA  106 (741)
T ss_dssp             CCCCEEEEECT--TSSEEEEEECC-----SSCTTEEEEEEEETTTCC--EEEEECGGGTC--------------------
T ss_pred             CCCCCCceEec--CCCEEEEEecc-----CCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhhhhhhc
Confidence            45689999999  56655554421     55     89999998765  2222211 111                    


Q ss_pred             --CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           61 --DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        61 --~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                        ..+.+++|+||| ++|++++. +.|.+||+..+.. .....+..|...+..++|+|+|+ .|+.++ ++.|++||+.+
T Consensus       107 ~~~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          107 AMTGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             CCEESCCCEECTTS-SEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTT
T ss_pred             cccCcceeEECCCC-CEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCC
Confidence              238899999998 57877775 8999999976410 03445666788899999999998 777776 56999999998


Q ss_pred             CceeEEeeccccc----------------eEEEEEecCCCCeEEEEeCCC------------------------------
Q 021121          139 PTSVRTFKEHAYC----------------VYNATWNPRHSDVFCSASGDC------------------------------  172 (317)
Q Consensus       139 ~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~dg------------------------------  172 (317)
                      ++.......+...                +..++|+|+ ++.|++++.|+                              
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            7665444333322                478999999 77777776655                              


Q ss_pred             ---eEEEEeCCC-CCceeeec--cCccceEEEEecCCCCcEEEEEec-----CCcEEEEEccCCCccEEEEecCCC----
Q 021121          173 ---TLRIWDVRE-MGSTMIIP--AHEFEILACDWNKYDDCLIASASV-----DKSIKIWDVRNYRVPIAVLNGHGY----  237 (317)
Q Consensus       173 ---~i~i~d~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~----  237 (317)
                         .|++||+.+ ++......  .+...+..++| | +++.|++++.     +..|++||+.+++. ...+..+..    
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~  337 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVP  337 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCC
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCC
Confidence               889999988 76554432  36778999999 9 8988887654     56799999998763 444443332    


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeE-EEEeccCCeEEEeecCC--cEEEEecCC
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV-DMSVLVEGLLASTGWDE--LVYVWQQGM  312 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg--~i~~w~~~~  312 (317)
                      .+..++|+|+++ ++++++.||.++||.+..... ...+..|...+..+ .|+|++..++++++.++  .+++|++..
T Consensus       338 ~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          338 LHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             cCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            456899999999 789999999888887763333 56677777778887 59999433445666666  899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=2.1e-27  Score=190.76  Aligned_cols=252  Identities=17%  Similarity=0.155  Sum_probs=185.7

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC-CCCCCCceeeccC-CcceEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL-PPTANPIRSLHEH-TREVHSAD  113 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~-~~~v~~~~  113 (317)
                      ++.|++||+....    ......+...|.+++|+|++ .+|++++ ++.|.+||+.. +   +.......+ ...+.+++
T Consensus        21 ~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           21 RSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDP---SPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             CEEEEEEETTTTE----EEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCC---SCEECCCTTCCCBCSCCE
T ss_pred             ceeEEEEeCCCCc----eeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCC---CceEeccccccccccceE
Confidence            7899999998654    22334678889999999998 5777776 78999999986 4   344444444 46788999


Q ss_pred             EecCCCCEEEEEc--CC--CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE-EEEeCCCeEEEEeCCC-CCceee
Q 021121          114 YNPTRRDSFITSS--WD--DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF-CSASGDCTLRIWDVRE-MGSTMI  187 (317)
Q Consensus       114 ~~~~~~~~l~~~~--~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~  187 (317)
                      |+|+++ .+++++  .+  ..|..+++.+++ ...+..+ ..+..++|+|+ ++.+ +++..++.+++|+++. ......
T Consensus        92 ~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPDGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTTSS-EEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTT-SSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ECCCCC-EEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCC-CCEEEEEECCCCceEEEEEECCCCcceE
Confidence            999998 788777  33  445555555544 3444433 34899999999 5554 4788899999998643 234455


Q ss_pred             eccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC--------
Q 021121          188 IPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD--------  258 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------  258 (317)
                      +..+...+.+++|+| +++.++.++ .++.+++|++.........+..|...+..++|+|+++. |++++.+        
T Consensus       168 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK-VVFVSYDADVFDHPR  245 (297)
T ss_dssp             CCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSE-EEEEEEETTCCSCCS
T ss_pred             cccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCE-EEEEEcCCCCCcccc
Confidence            666778899999999 888777665 58999999987434446777778888999999999994 6666554        


Q ss_pred             ---CeEEEEecccccc-eeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          259 ---MTVCLWDFMVEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       259 ---~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                         +.|.+||+.+++. .+....+|...+..++|+|+ ++.|++++.+.
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  293 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD-GDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT-SSEEEEEEECC
T ss_pred             cCceEEEEEecCCCCceeeeccCCCCcccccceECCC-CCEEEEEEecc
Confidence               5699999988752 23344577888999999999 67777666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=1.3e-27  Score=215.25  Aligned_cols=286  Identities=9%  Similarity=0.050  Sum_probs=196.8

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCC---CeeEEEecCCCCCeEEEEEcC--
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD---GVYDLAWSESHDSLLIAAVAD--   82 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d--   82 (317)
                      ..+.+++|+|  ++.++++ +.      +|.|++||......  ..+. ..+..   .|.+++|+||| ++|++++.+  
T Consensus        17 ~~~~~~~~sp--dg~~~~~-~~------dg~i~~~d~~~g~~--~~~~-~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~   83 (723)
T 1xfd_A           17 IHDPEAKWIS--DTEFIYR-EQ------KGTVRLWNVETNTS--TVLI-EGKKIESLRAIRYEISPDR-EYALFSYNVEP   83 (723)
T ss_dssp             CCCCCCCBSS--SSCBCCC-CS------SSCEEEBCGGGCCC--EEEE-CTTTTTTTTCSEEEECTTS-SEEEEEESCCC
T ss_pred             ccccccEEcC--CCcEEEE-eC------CCCEEEEECCCCcE--EEEe-ccccccccccceEEECCCC-CEEEEEecCcc
Confidence            3467899999  5666665 33      89999999987652  2221 12332   49999999998 588888764  


Q ss_pred             -------CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce---
Q 021121           83 -------GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV---  152 (317)
Q Consensus        83 -------g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v---  152 (317)
                             +.+.+||+..++. ..+.....|...+..++|+|+|+ .|+.++. +.|++||+.+++.......+...+   
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~  160 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             ceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceEC
Confidence                   7888999987622 22333334555688999999998 7777775 799999999887766555443333   


Q ss_pred             ---------------EEEEEecCCCCeEEEEeCCC----------------------------------eEEEEeCCCCC
Q 021121          153 ---------------YNATWNPRHSDVFCSASGDC----------------------------------TLRIWDVREMG  183 (317)
Q Consensus       153 ---------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~  183 (317)
                                     .+++|+|+ ++.|++++.++                                  .|++||+.+++
T Consensus       161 g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          161 GLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             cccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                           78999999 78777776542                                  79999999887


Q ss_pred             ceeeeccC------ccceEEEEecCCCCcEEEEEec----CCcEEEEEccCCCccEEEEe-cCCCce----eEEEecCCC
Q 021121          184 STMIIPAH------EFEILACDWNKYDDCLIASASV----DKSIKIWDVRNYRVPIAVLN-GHGYAV----RKVKFSPHR  248 (317)
Q Consensus       184 ~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~-~~~~~v----~~~~~~~~~  248 (317)
                      ....+..+      ...+.+++|+| +++++++...    +..|++||+.+++. ...+. .+...+    ..++|+|+|
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          240 HDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             CCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCCCEECTTS
T ss_pred             eeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCCCceEcCCC
Confidence            65555543      56789999999 9998877653    35799999988764 33332 334444    378999999


Q ss_pred             CeeEEe-eecCC------eEEEEecccccc--eeeeeecccceeEe-EEEEeccCCeEEEee-cC--CcEEEEecCCC
Q 021121          249 RNLLAS-CSYDM------TVCLWDFMVEDA--LVGRYDHHTEFAVG-VDMSVLVEGLLASTG-WD--ELVYVWQQGMD  313 (317)
Q Consensus       249 ~~~l~~-~~~d~------~i~vwd~~~~~~--~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~-~d--g~i~~w~~~~~  313 (317)
                      +.+++. +..++      .|.+||+..+..  ....+..+...+.. ++|+|+ ++.|+..+ .+  +.+++|+++..
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK-GNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT-TTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC-CCEEEEEEcCCCCcceEEEEEeCC
Confidence            965444 55677      466677323322  12334333333444 699999 66665544 44  88999998653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.96  E-value=5.4e-26  Score=187.15  Aligned_cols=271  Identities=10%  Similarity=0.115  Sum_probs=187.1

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc--CCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA--DGSVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      ++.|.+|+++.....+..+....+...+..++|+|++. +++++..  ++.|.+|++..+ ..+.+..+..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEE
Confidence            56799999886554455545555667788999999984 5444443  689999999654 2234444455677888999


Q ss_pred             EecCCCCEEEEEc-CCCEEEEEEcCCC-c--eeEEeec---------cccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          114 YNPTRRDSFITSS-WDDTVKLWTVDRP-T--SVRTFKE---------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       114 ~~~~~~~~l~~~~-~dg~v~iwd~~~~-~--~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      |+|+++ +|++++ .++.|.+|++... .  .+..+..         ....+.+++|+|+ ++++++...++.|++||+.
T Consensus        93 ~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd-g~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           93 VDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD-NRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT-SCEEEEETTTTEEEEEEEC
T ss_pred             ECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC-CcEEEEeCCCCEEEEEEEC
Confidence            999998 666665 7899999999633 2  2222221         1124889999999 5577777778999999998


Q ss_pred             -CCCcee--eecc-CccceEEEEecCCCCcEEEE-EecCCcEEEEEccC--CCc-cEEEEecCC------CceeEEEecC
Q 021121          181 -EMGSTM--IIPA-HEFEILACDWNKYDDCLIAS-ASVDKSIKIWDVRN--YRV-PIAVLNGHG------YAVRKVKFSP  246 (317)
Q Consensus       181 -~~~~~~--~~~~-~~~~v~~i~~~~~~~~~l~~-~~~d~~i~v~d~~~--~~~-~~~~~~~~~------~~v~~~~~~~  246 (317)
                       +++...  .+.. ....+..++|+| +++++++ ...++.|.+|++..  ++. .........      ..+..++|+|
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence             443221  1122 233577899999 8885554 56788999999885  221 122222222      3588899999


Q ss_pred             CCCeeEEeeecCCeEEEEeccccc--ceeeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCC
Q 021121          247 HRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGM  312 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~  312 (317)
                      +|+.++++...++.|.+|++....  ..+..+..+...+..++|+|+ +++|++++ .++.|.+|+++.
T Consensus       250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT-EAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT-SSEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC-CCEEEEEEcCCCcEEEEEEeC
Confidence            999655677778999999987432  234455555667889999999 67666666 458999997754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=1.6e-26  Score=189.27  Aligned_cols=259  Identities=9%  Similarity=0.025  Sum_probs=188.4

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCC---CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-----CCc
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTAD---GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-----HTR  107 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-----~~~  107 (317)
                      ++.|.+||.....    .+..+....   .+..++|+|++..+++++..++.|.+||+.++   +....+..     |..
T Consensus        10 ~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B           10 PDKLVVIDTEKMA----VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPEERVK   82 (337)
T ss_dssp             TTEEEEEETTTTE----EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTTEEEE
T ss_pred             CCeEEEEECCCCc----EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCcccccc
Confidence            8999999997654    233333333   58899999998655566667899999998765   44433332     122


Q ss_pred             ceEEEEEecCCCCEEEEEc------------CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEE
Q 021121          108 EVHSADYNPTRRDSFITSS------------WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLR  175 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  175 (317)
                      .+..++|+|+++ .+++++            .++.|.+||+.+++....+.. ...+.+++|+|+ ++.++++  ++.|.
T Consensus        83 ~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d-g~~l~~~--~~~i~  157 (337)
T 1pby_B           83 SLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD-GSKLYGL--GRDLH  157 (337)
T ss_dssp             CTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT-SSCEEEE--SSSEE
T ss_pred             cccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC-CCEEEEe--CCeEE
Confidence            577899999998 677765            579999999998888777764 456888999999 6666666  68899


Q ss_pred             EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-C-----------------------cEEEEEccCCCccEEE
Q 021121          176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-K-----------------------SIKIWDVRNYRVPIAV  231 (317)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~-----------------------~i~v~d~~~~~~~~~~  231 (317)
                      +||+.+++....+..+.. ...+.|+| ++..++..+.. +                       .|.+||+.+.+.....
T Consensus       158 ~~d~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          158 VMDPEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEETTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             EEECCCCcEeeeeecccc-CCCceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence            999998887766654331 11347788 66655444322 2                       4689999987653334


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +..+...+.+++|+|+++ +++++  ++.|.+||+.+++ ....+.. ...+.+++|+|+ +++|++++.++.|++||+.
T Consensus       236 ~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~~-~~~~~~~-~~~~~~~~~s~d-g~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKNA-SIKRVPL-PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTTE-EEEEEEC-SSCCCEEEECTT-SCEEEEESBSSEEEEEETT
T ss_pred             cCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCCc-CcceecC-CCceeeEEECCC-CCEEEEEcCCCcEEEEECc
Confidence            455667788999999998 46666  6899999998876 3344443 345789999999 6778888889999999997


Q ss_pred             CCC
Q 021121          312 MDP  314 (317)
Q Consensus       312 ~~~  314 (317)
                      +..
T Consensus       310 ~~~  312 (337)
T 1pby_B          310 TLE  312 (337)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.96  E-value=3.2e-26  Score=205.76  Aligned_cols=281  Identities=12%  Similarity=0.095  Sum_probs=200.6

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      ..|.+++|||  ++.++++.        ++.|++||+....  .  .....+...+.+++|+|+| +.|+.+ .++.|.+
T Consensus        82 ~~v~~~~~sp--d~~~~~~~--------~~~i~~~d~~~~~--~--~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v  145 (706)
T 2z3z_A           82 FPSFRTLDAG--RGLVVLFT--------QGGLVGFDMLARK--V--TYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYI  145 (706)
T ss_dssp             CCCEEEEETT--TTEEEEEE--------TTEEEEEETTTTE--E--EEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEE
T ss_pred             cCceeEEECC--CCeEEEEE--------CCEEEEEECCCCc--e--EEccCCcccccCCcCCCCC-CEEEEE-ECCeEEE
Confidence            5699999999  46666653        6799999997653  2  2233566779999999998 477774 6899999


Q ss_pred             EEeCC-----CCCCCCceeeccCCcc--------------eEEEEEecCCCCEEEEEc----------------------
Q 021121           88 YDTAL-----PPTANPIRSLHEHTRE--------------VHSADYNPTRRDSFITSS----------------------  126 (317)
Q Consensus        88 ~~~~~-----~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~----------------------  126 (317)
                      |++..     +   +.......+...              +.++.|+|||+ .|++++                      
T Consensus       146 ~~~~~~~~~~g---~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          146 ARGGKLGEGMS---RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             EECBCTTSCCC---CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             EecCcccccCC---CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceE
Confidence            99986     4   233222222222              57899999998 777776                      


Q ss_pred             -----------CCCEEEEEEcCCCceeEEee--ccccceEEEEEecCCCCeEEEEeCCC-----eEEEEeCCCCCceeee
Q 021121          127 -----------WDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDC-----TLRIWDVREMGSTMII  188 (317)
Q Consensus       127 -----------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~  188 (317)
                                 .+..|.+||+.+++......  .+...+.+++|+|+ ++.+++++.++     .|++||+.+++....+
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                       45789999999887544332  45677999999999 78777776665     8999999988443333


Q ss_pred             c--cCcc---ceEEEEecC-CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeE-EEecCCCCeeEEeeecCC--
Q 021121          189 P--AHEF---EILACDWNK-YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK-VKFSPHRRNLLASCSYDM--  259 (317)
Q Consensus       189 ~--~~~~---~v~~i~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~--  259 (317)
                      .  .+..   .+.+++|+| .++++++++..++.+++|++.........+..+...+.. ++|+|+++.++++++.++  
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~  380 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL  380 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred             EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence            2  1221   246789998 256788899899999999887333346677777777876 799999996666666655  


Q ss_pred             --eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe-ecC---CcEEEEecCCC
Q 021121          260 --TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWD---ELVYVWQQGMD  313 (317)
Q Consensus       260 --~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d---g~i~~w~~~~~  313 (317)
                        .|..||+.+++  ...+. +...+..++|+|+ +++|+.. +.+   +.|++||+...
T Consensus       381 ~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~spd-g~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          381 ERHFYCIDIKGGK--TKDLT-PESGMHRTQLSPD-GSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             CBEEEEEETTCCC--CEESC-CSSSEEEEEECTT-SSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             eEEEEEEEcCCCC--ceecc-CCCceEEEEECCC-CCEEEEEecCCCCCcEEEEEECCCC
Confidence              66667766654  22333 5667899999999 5666554 333   56999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=6.8e-26  Score=185.94  Aligned_cols=274  Identities=13%  Similarity=0.163  Sum_probs=180.5

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE-cC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV-AD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d   82 (317)
                      +.+...+.+++|+|  ++..++++...     ++.|.+|+++........+........+..++|+|++. ++++++ .+
T Consensus        34 ~~~~~~~~~~~~sp--dg~~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~  105 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP--DKRYLYVGVRP-----EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ-FVFVGSYNA  105 (343)
T ss_dssp             EECSSCCCCEEECT--TSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS-EEEEEETTT
T ss_pred             EecCCCCceEEECC--CCCEEEEeecC-----CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCC-EEEEEecCC
Confidence            34566788999999  55544444431     48999999984332344444444445889999999985 555544 58


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc-CCCEEEEEEcCC-CceeE----Eeec-cccceEEE
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS-WDDTVKLWTVDR-PTSVR----TFKE-HAYCVYNA  155 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~-~~~~~----~~~~-~~~~v~~~  155 (317)
                      +.|.+||+..+........+.. ...+.+++|+|+++ .+++++ .++.|.+||+.+ ++...    .+.. ....+..+
T Consensus       106 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          106 GNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             TEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             CeEEEEECCCCccccccccccC-CCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence            8999999952211233333333 34688999999998 566555 899999999987 54432    2222 33478899


Q ss_pred             EEecCCCCe-EEEEeCCCeEEEEeCCC--CCc--eeeec---cC---ccceEEEEecCCCCcEEE-EEecCCcEEEEEcc
Q 021121          156 TWNPRHSDV-FCSASGDCTLRIWDVRE--MGS--TMIIP---AH---EFEILACDWNKYDDCLIA-SASVDKSIKIWDVR  223 (317)
Q Consensus       156 ~~~~~~~~~-l~~~~~dg~i~i~d~~~--~~~--~~~~~---~~---~~~v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~  223 (317)
                      +|+|+ ++. ++++..++.|.+||++.  ++.  ...+.   ..   ...+..++|+| ++++++ ++..++.|.+||+.
T Consensus       184 ~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          184 VFHPN-EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EECTT-SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEc
Confidence            99999 664 45555899999999964  332  12221   11   23466899999 777666 55578999999998


Q ss_pred             C--CC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc--ccc-ceeeeeecccceeEeEEEEec
Q 021121          224 N--YR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM--VED-ALVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       224 ~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~--~~~-~~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .  .. ..+..+..+.. +..++|+|+++.+++++..++.|.+|++.  +++ ..+..+.. .....+++|.|+
T Consensus       262 ~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~  333 (343)
T 1ri6_A          262 EDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAH  333 (343)
T ss_dssp             TTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEE
T ss_pred             CCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcc
Confidence            3  22 22334444444 88999999999544444478999999654  433 22333333 245677888886

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3.6e-26  Score=206.48  Aligned_cols=281  Identities=7%  Similarity=0.056  Sum_probs=201.0

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC-cceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP-ALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      .+.+++|||  +++.++.+.       ++.|++||+..... ....  ...+...+..++|+||| +.|+.++ ++.|.+
T Consensus       110 ~v~~~~~Sp--Dg~~l~~~~-------~~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~  176 (741)
T 2ecf_A          110 GIVDYQWSP--DAQRLLFPL-------GGELYLYDLKQEGKAAVRQ--LTHGEGFATDAKLSPKG-GFVSFIR-GRNLWV  176 (741)
T ss_dssp             ESCCCEECT--TSSEEEEEE-------TTEEEEEESSSCSTTSCCB--CCCSSSCEEEEEECTTS-SEEEEEE-TTEEEE
T ss_pred             CcceeEECC--CCCEEEEEe-------CCcEEEEECCCCCcceEEE--cccCCcccccccCCCCC-CEEEEEe-CCcEEE
Confidence            478999999  666666665       47999999987610 1222  22566789999999998 5777776 568999


Q ss_pred             EEeCCCCCCCCceeeccCCc----------------ceEEEEEecCCCCEEEEEcCCC----------------------
Q 021121           88 YDTALPPTANPIRSLHEHTR----------------EVHSADYNPTRRDSFITSSWDD----------------------  129 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg----------------------  129 (317)
                      ||+..+   +.......+..                .+..+.|+|||+ .|++++.|+                      
T Consensus       177 ~d~~~g---~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          177 IDLASG---RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EETTTT---EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             EecCCC---CEEEeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            998764   22222222222                147799999998 777776554                      


Q ss_pred             -----------EEEEEEcCC-CceeEEee--ccccceEEEEEecCCCCeEEEEeC-----CCeEEEEeCCCCCceeeecc
Q 021121          130 -----------TVKLWTVDR-PTSVRTFK--EHAYCVYNATWNPRHSDVFCSASG-----DCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       130 -----------~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~  190 (317)
                                 .|.+||+.+ ++......  .+...+..++| |+ ++.|++++.     +..|++||+.+++....+..
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  330 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE  330 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence                       889999988 76554432  36778999999 99 777665543     57899999999887666654


Q ss_pred             Ccc----ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE-EecCCCCeeEEeeecCC--eEEE
Q 021121          191 HEF----EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV-KFSPHRRNLLASCSYDM--TVCL  263 (317)
Q Consensus       191 ~~~----~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~d~--~i~v  263 (317)
                      +..    .+..++|+| +++++++++.++.+++|.+..... ...+..+...+..+ .|+|+++.++++++.++  .++|
T Consensus       331 ~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l  408 (741)
T 2ecf_A          331 TSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI  408 (741)
T ss_dssp             ECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred             CCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence            433    356899999 888999999999888887763333 66777777788887 59999986566666666  8999


Q ss_pred             EecccccceeeeeecccceeEeEEEEeccCCeEEEe-ecC---CcEEEEecCC
Q 021121          264 WDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWD---ELVYVWQQGM  312 (317)
Q Consensus       264 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d---g~i~~w~~~~  312 (317)
                      |++.........+.. ...+..++|+|+ ++.|+.. +..   ..+.+|+...
T Consensus       409 ~~~~~~g~~~~~l~~-~~~~~~~~~spd-g~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          409 YAVPLQGGQPQRLSK-APGMHSASFARN-ASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             EEEETTCCCCEECCC-SCSEEEEEECTT-SSEEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEEcCCCCeeeccc-CCCceEEEECCC-CCEEEEEecCCCCCCeEEEEEcCC
Confidence            998753333344444 556789999999 5555443 332   4688888643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.95  E-value=1.1e-25  Score=190.15  Aligned_cols=246  Identities=12%  Similarity=0.092  Sum_probs=167.9

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC---------Cc---ceeeeeecCCCCeeEEEecCCCCCe
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA---------PA---LTELVAFDTADGVYDLAWSESHDSL   75 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~---------~~---~~~~~~~~~~~~v~~~~~~~~~~~~   75 (317)
                      ..+..++++|.  +.++++++.      +| +++|+.....         ..   ........+...|.+++|+|++ .+
T Consensus        37 ~~~n~lavs~~--~~~l~~~~~------dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~  106 (434)
T 2oit_A           37 ERSSLLAVSNK--YGLVFAGGA------SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LT  106 (434)
T ss_dssp             SCCBCEEEETT--TTEEEEEET------TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CE
T ss_pred             CCccEEEEecC--CCEEEEECC------CE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CE
Confidence            35788999994  444444443      55 8888764210         00   0111223566789999999998 57


Q ss_pred             EE----EEEcCCeEEEEEeCCC-----CCCC---CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121           76 LI----AAVADGSVKIYDTALP-----PTAN---PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        76 l~----~~~~dg~i~v~~~~~~-----~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  143 (317)
                      |+    +|+.|+.|++||+...     ...+   ....+.+|...|.+++|+|+...+|++++.||.|++||++++....
T Consensus       107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~  186 (434)
T 2oit_A          107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC  186 (434)
T ss_dssp             EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred             EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence            77    7788999999998653     1111   2345667999999999999855599999999999999999987776


Q ss_pred             EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-------ccceEEEEecCCCCcEEEEE-ecCC
Q 021121          144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-------EFEILACDWNKYDDCLIASA-SVDK  215 (317)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~~~-~~d~  215 (317)
                      ....|...|.+++|+|+ +++|++|+.||.|++||++ ++....+..+       ...+.+++|++ +..++++. ..+|
T Consensus       187 ~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg  263 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADG  263 (434)
T ss_dssp             EEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTC
T ss_pred             eccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCC
Confidence            67778899999999999 8999999999999999998 5555444332       33799999998 77666543 3343


Q ss_pred             ------cEEEEEccCCCc----cEEEEe-------cCCCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          216 ------SIKIWDVRNYRV----PIAVLN-------GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       216 ------~i~v~d~~~~~~----~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                            .+++|++++.+.    ....+.       +...+-..+.+-++.+.++++.+..+.|.+...
T Consensus       264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence                  389999986531    111111       111222233444666644555545555555553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=8.5e-26  Score=198.57  Aligned_cols=274  Identities=11%  Similarity=0.053  Sum_probs=197.1

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC-CCeeEEEecCCCCCeEEEEEc---C
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA-DGVYDLAWSESHDSLLIAAVA---D   82 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---d   82 (317)
                      ..+|++++|+|  +++.++..+.     .+|.++||+++.+.  .  .....+. ..+..++|+|+  .++++++.   +
T Consensus        21 ~~~~~~~~~~~--DG~~la~~s~-----~~g~~~lw~~~~g~--~--~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~   87 (582)
T 3o4h_A           21 AVEKYSLQGVV--DGDKLLVVGF-----SEGSVNAYLYDGGE--T--VKLNREPINSVLDPHYGVG--RVILVRDVSKGA   87 (582)
T ss_dssp             HSCEEEEEEEE--TTTEEEEEEE-----ETTEEEEEEEETTE--E--EECCSSCCSEECEECTTCS--EEEEEEECSTTS
T ss_pred             ccchheeecCC--CCCeEEEEEc-----cCCceeEEEEcCCC--c--EeeecccccccccccCCCC--eEEEEeccCCCC
Confidence            45799999999  4554444432     18999999985432  2  2222444 57999999998  47777765   4


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ...++|.+......... .+.. ...+...+|+|+++..+++.+.++.+.+||+++++.......+ .  .+++|+|+ +
T Consensus        88 ~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spD-G  161 (582)
T 3o4h_A           88 EQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIR-G  161 (582)
T ss_dssp             CCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEE-T
T ss_pred             cceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCC-C
Confidence            56777776541111222 2222 2234466889988755555555556669999988765544433 2  88999999 8


Q ss_pred             CeEEEEeCC----CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC--cEEEEEccCCCccEEEEecCC
Q 021121          163 DVFCSASGD----CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK--SIKIWDVRNYRVPIAVLNGHG  236 (317)
Q Consensus       163 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~  236 (317)
                      +.+++++.+    +.|++||+.+++.. .+..+...+..++|+| +++.|+++..++  .|++||+.+++. . .+..|.
T Consensus       162 ~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~-~-~~~~~~  237 (582)
T 3o4h_A          162 DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSV-E-DLELPS  237 (582)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCE-E-ECCCSC
T ss_pred             CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcE-E-EccCCC
Confidence            888877776    78999999887654 5667888899999999 999999888888  899999988664 3 666777


Q ss_pred             CceeEEE--------ecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCC---cE
Q 021121          237 YAVRKVK--------FSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE---LV  305 (317)
Q Consensus       237 ~~v~~~~--------~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i  305 (317)
                      ..+..++        |+|+|. ++++++.++.+++|++  ++ ...   ...+.+.+++|+ + +.++++++.+.   .+
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~--g~-~~~---~~~~~v~~~~~s-d-g~~l~~~s~~~~p~~l  308 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID--GE-RVE---APQGNHGRVVLW-R-GKLVTSHTSLSTPPRI  308 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET--TE-EEC---CCSSEEEEEEEE-T-TEEEEEEEETTEEEEE
T ss_pred             cChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE--CC-eec---cCCCceEEEEec-C-CEEEEEEcCCCCCCeE
Confidence            7777777        999995 8999999999999999  43 222   334678899999 6 78888877764   46


Q ss_pred             EEEecCC
Q 021121          306 YVWQQGM  312 (317)
Q Consensus       306 ~~w~~~~  312 (317)
                      .+|+...
T Consensus       309 ~~~d~~~  315 (582)
T 3o4h_A          309 VSLPSGE  315 (582)
T ss_dssp             EEETTCC
T ss_pred             EEEcCCC
Confidence            6666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.95  E-value=1.4e-25  Score=189.40  Aligned_cols=203  Identities=15%  Similarity=0.143  Sum_probs=155.6

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-----C--CCce-----eeccCCcceEEEEEecCCCCEEE----E
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-----A--NPIR-----SLHEHTREVHSADYNPTRRDSFI----T  124 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-----~--~~~~-----~~~~~~~~v~~~~~~~~~~~~l~----~  124 (317)
                      ..++.+++++++ .++++++.++ +++|+......     .  ....     ....+...|.+++|+|+++ +|+    +
T Consensus        37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~s  113 (434)
T 2oit_A           37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMS  113 (434)
T ss_dssp             SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEE
T ss_pred             CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEec
Confidence            357899999987 5888888887 89987542100     0  0111     1123567899999999998 777    7


Q ss_pred             EcCCCEEEEEEcCCC--------ce---eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc
Q 021121          125 SSWDDTVKLWTVDRP--------TS---VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF  193 (317)
Q Consensus       125 ~~~dg~v~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (317)
                      ++.|+.|++||++++        +.   ...+.+|...|.+++|+|+++++|++++.||+|++||++++........|..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            889999999998764        22   3445568999999999998788999999999999999998866666667888


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC-------CCceeEEEecCCCCeeEEeeecCC------e
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH-------GYAVRKVKFSPHRRNLLASCSYDM------T  260 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d~------~  260 (317)
                      .+.+++|+| ++++|++|+.||.|++||.+ .+ ....+..|       ...|.+++|++++..+++....+|      .
T Consensus       194 ~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          194 AVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             ceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            999999999 89999999999999999998 33 23444333       338999999998874333444443      3


Q ss_pred             EEEEecccc
Q 021121          261 VCLWDFMVE  269 (317)
Q Consensus       261 i~vwd~~~~  269 (317)
                      +++|+++..
T Consensus       271 v~i~~l~~~  279 (434)
T 2oit_A          271 VVMALLPKK  279 (434)
T ss_dssp             EEEEECCCT
T ss_pred             eEEEEeccC
Confidence            899999865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.4e-24  Score=178.88  Aligned_cols=245  Identities=10%  Similarity=0.080  Sum_probs=185.1

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEc-------CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCE
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVA-------DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT  130 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~-------dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  130 (317)
                      .....+..++|+|+++ .+++++.       ++.|.+||..+.   +....+.. ...+..++|+|+++.++++...++.
T Consensus        38 ~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTL---EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             EEESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTC---CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             hhccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCC---eEEEEEec-CCCcceEEECCCCCEEEEEecCCCE
Confidence            4456788999999985 5666553       568999998765   44444443 3457789999999855666677899


Q ss_pred             EEEEEcCCCceeEEeecccc---------ceEEEEEecCCCCeEEEEe--CCCeEEEEeCCCCCceeeeccCccceEEEE
Q 021121          131 VKLWTVDRPTSVRTFKEHAY---------CVYNATWNPRHSDVFCSAS--GDCTLRIWDVREMGSTMIIPAHEFEILACD  199 (317)
Q Consensus       131 v~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~  199 (317)
                      |.+||+++++.+..+..+..         .+.+++|+|+ ++.+++++  .++.|.+||+++++....+..+...+..++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            99999999998887765432         2789999999 56555554  578999999999888887775566688999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121          200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      |+| +++.+++++.++.|.+||..+.+. ...+..    +...+..++|+|+++.++++...++.|.+||..+++ ....
T Consensus       192 ~s~-dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~  268 (353)
T 3vgz_A          192 LDS-EGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-ILAK  268 (353)
T ss_dssp             EET-TTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-EEEE
T ss_pred             ECC-CCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEE
Confidence            999 899999999999999999988664 444432    455678899999999655555566999999998876 3444


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +....  ...++|+|++..++++...++.|.+||+...
T Consensus       269 ~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          269 VAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            44332  2679999994335556667999999998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=7e-25  Score=204.64  Aligned_cols=277  Identities=10%  Similarity=0.012  Sum_probs=210.4

Q ss_pred             CcceeEEEEe-cCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCC-CeeEEEecCCCCCeEEEEEcCCe
Q 021121            7 PFNGYSVKFS-PFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD-GVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         7 ~~~v~~~~~~-p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      ...+.+++|| |  ++..++...       ++.|.+|+.....  .  .....+.. .+..++|+ ++ ..|+.++.++.
T Consensus       295 ~~~v~~~~~S~p--dG~~la~~~-------~~~i~~~~~~~~~--~--~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~  359 (1045)
T 1k32_A          295 IPSKFAEDFSPL--DGDLIAFVS-------RGQAFIQDVSGTY--V--LKVPEPLRIRYVRRGGD-TK-VAFIHGTREGD  359 (1045)
T ss_dssp             CGGGGEEEEEEC--GGGCEEEEE-------TTEEEEECTTSSB--E--EECSCCSCEEEEEECSS-SE-EEEEEEETTEE
T ss_pred             ccccceeeecCC--CCCEEEEEE-------cCEEEEEcCCCCc--e--EEccCCCcceEEeeeEc-CC-CeEEEEECCCc
Confidence            3468999999 9  566565555       6799999987653  1  22234556 79999999 87 57888888888


Q ss_pred             EE-EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCC
Q 021121           85 VK-IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~-v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (317)
                      +. +|++..+   . ...+..|...+..++|+|+++ .|++++.++.|++||+.+++.......|...+.+++|+|+ ++
T Consensus       360 l~~~~d~~~~---~-~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD-G~  433 (1045)
T 1k32_A          360 FLGIYDYRTG---K-AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN-SR  433 (1045)
T ss_dssp             EEEEEETTTC---C-EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT-SC
T ss_pred             eEEEEECCCC---C-ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCC-CC
Confidence            88 8887654   2 233447788999999999998 8999999999999999999888777788888999999999 77


Q ss_pred             eEEEEeCC----------CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC-------
Q 021121          164 VFCSASGD----------CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR-------  226 (317)
Q Consensus       164 ~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~-------  226 (317)
                      .+++++.+          +.|++||+.+++ ...+..+...+..++|+| +++.|+.++.++...+|+.....       
T Consensus       434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~  511 (1045)
T 1k32_A          434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVS  511 (1045)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred             eEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCc
Confidence            77777654          489999998876 666777888889999999 99999998887766666532211       


Q ss_pred             -----------------------------------ccEEEEecCCCceeEEEecCCCCeeEEe-------------eecC
Q 021121          227 -----------------------------------VPIAVLNGHGYAVRKVKFSPHRRNLLAS-------------CSYD  258 (317)
Q Consensus       227 -----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~-------------~~~d  258 (317)
                                                         ..+..+..|...+..++++|++. ++++             ....
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~-~~~~~~~~g~~~~~~~~~~~~  590 (1045)
T 1k32_A          512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI-LIYSVPVHGEFAAYYQGAPEK  590 (1045)
T ss_dssp             EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE-EEEECCCCCSHHHHHHCCCCC
T ss_pred             eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCe-EEEEecccCcccccccccCCC
Confidence                                               11233344667789999999997 4553             1234


Q ss_pred             CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          259 MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       259 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ..|.+||+.+++.  ..+.   ..+..++|+|+ ++.|++++.+ .+++||+...+
T Consensus       591 ~~l~~~d~~~~~~--~~l~---~~v~~~~~S~D-G~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          591 GVLLKYDVKTRKV--TEVK---NNLTDLRLSAD-RKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEEEETTTCCE--EEEE---EEEEEEEECTT-SCEEEEEETT-SCEEEEESSCT
T ss_pred             ceEEEEECCCCcE--EEee---cCcceEEECCC-CCEEEEEcCC-cEEEEeCccCc
Confidence            5788889887762  2222   56889999999 7888888766 79999998765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=4.9e-25  Score=205.73  Aligned_cols=276  Identities=10%  Similarity=0.043  Sum_probs=211.5

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...+.++.|+|  + .++++...      +|.+.||.++........+.  .+ ..+...+|+|+| ..|+.+ .++.|
T Consensus       202 ~~~~v~~~~~s~--d-~l~~~~~~------dg~~~l~~~~~~g~~~~~l~--~~-~~~~~~~~SpDG-~~la~~-~~~~i  267 (1045)
T 1k32_A          202 MSTHVSSPVIVG--H-RIYFITDI------DGFGQIYSTDLDGKDLRKHT--SF-TDYYPRHLNTDG-RRILFS-KGGSI  267 (1045)
T ss_dssp             CSSCCEEEEEET--T-EEEEEECT------TSSCEEEEEETTSCSCEECC--CC-CSSCEEEEEESS-SCEEEE-ETTEE
T ss_pred             CCCcccceEEeC--C-EEEEEEec------cCceEEEEEeCCCCcceEec--CC-CCcceeeEcCCC-CEEEEE-eCCEE
Confidence            567788999999  4 66666654      78889998765432233322  22 356778999998 467666 48999


Q ss_pred             EEEEeCCCCCCCCceeecc-----------CCcceEEEEEe-cCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-ce
Q 021121           86 KIYDTALPPTANPIRSLHE-----------HTREVHSADYN-PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-CV  152 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v  152 (317)
                      .+|++..    ..+..+..           |...+.+++|+ |+|+ .+++++ ++.|.+|++.+++.. .+..+.. .+
T Consensus       268 ~~~d~~~----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~  340 (1045)
T 1k32_A          268 YIFNPDT----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRY  340 (1045)
T ss_dssp             EEECTTT----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEE
T ss_pred             EEecCCc----eEeeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCceE-EccCCCcceE
Confidence            9999832    22223333           44578999999 9998 677666 789999999877644 3555666 89


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEE-EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121          153 YNATWNPRHSDVFCSASGDCTLR-IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      ..++|+ + ++.++.++.++.+. +||+.+++.. .+..+...+..++|+| +++.|++++.++.|++||+.+++. ...
T Consensus       341 ~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~-~~~  415 (1045)
T 1k32_A          341 VRRGGD-T-KVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP-TVI  415 (1045)
T ss_dssp             EEECSS-S-EEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EEE
T ss_pred             EeeeEc-C-CCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCce-EEe
Confidence            999999 7 78888888888899 9999876544 3446778899999999 999999999999999999988663 555


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecC----------CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYD----------MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                      ...|...+..++|+|+|+ +|++++.+          +.|++||+.+++  ...+..|...+..++|+|+ ++.|+.++.
T Consensus       416 ~~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spd-G~~l~~~s~  491 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDAD-SKNLYYLSY  491 (1045)
T ss_dssp             EECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTT-SCEEEEEES
T ss_pred             ccCCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCC-CCEEEEEec
Confidence            557888999999999999 46666554          489999998875  4566777888899999999 788888888


Q ss_pred             CCcEEEEecC
Q 021121          302 DELVYVWQQG  311 (317)
Q Consensus       302 dg~i~~w~~~  311 (317)
                      ++...+|+..
T Consensus       492 ~~~~~~~~~~  501 (1045)
T 1k32_A          492 RSLDPSPDRV  501 (1045)
T ss_dssp             CCCCCEECSS
T ss_pred             ccCCcCcchh
Confidence            8877777653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=6.6e-24  Score=175.63  Aligned_cols=269  Identities=7%  Similarity=0.032  Sum_probs=180.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC----CeEEEEEeCCC-CCCCCceeeccCCcceE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD----GSVKIYDTALP-PTANPIRSLHEHTREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~v~~~~~~-~~~~~~~~~~~~~~~v~  110 (317)
                      ++.|++|+++.....+..+... +...+..++|+|++ ++|++++.+    +.|.+|++... .....+.....+.....
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~  103 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC  103 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred             CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence            6789999997655445555555 66778889999998 577777775    79999998753 12233334444556677


Q ss_pred             EEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe----e--c--------cccceEEEEEecCCCC-eEEEEeCCCeEE
Q 021121          111 SADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF----K--E--------HAYCVYNATWNPRHSD-VFCSASGDCTLR  175 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~--~--------~~~~v~~~~~~~~~~~-~l~~~~~dg~i~  175 (317)
                      .+++  +++.++++...++.|.+|++.....+..+    .  +        +...+.+++|+|+ ++ ++++...++.|.
T Consensus       104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~  180 (361)
T 3scy_A          104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-GKYLLADDLGTDQIH  180 (361)
T ss_dssp             EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred             EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-CCEEEEEeCCCCEEE
Confidence            7777  66634444457899999999754332211    1  1        1223588999999 66 555555689999


Q ss_pred             EEeCCCCCc------e-------eeeccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCc-cEEEEe---cCCC
Q 021121          176 IWDVREMGS------T-------MIIPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRV-PIAVLN---GHGY  237 (317)
Q Consensus       176 i~d~~~~~~------~-------~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~-~~~~~~---~~~~  237 (317)
                      +|++.....      +       .........+..++|+| +++++++++ .++.|.+||+.+++. .+..+.   .+..
T Consensus       181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~  259 (361)
T 3scy_A          181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ  259 (361)
T ss_dssp             EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC
T ss_pred             EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC
Confidence            999875442      1       11223345678999999 888777666 689999999986532 122222   2334


Q ss_pred             ceeEEEecCCCCeeEEeeec-CCeEEEEecc--ccc-ceeeeeecccceeEeEEEEeccCCeEEEee-cCCcEEEEecCC
Q 021121          238 AVRKVKFSPHRRNLLASCSY-DMTVCLWDFM--VED-ALVGRYDHHTEFAVGVDMSVLVEGLLASTG-WDELVYVWQQGM  312 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~-d~~i~vwd~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~  312 (317)
                      ....++|+|+++.++++... ++.|.+|++.  +++ ..+..+.. ...+..++|+|+ +++|++++ .++.|.+|+++.
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPN-GKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTT-SCEEEEEETTTTEEEEEEECT
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCC-CCEEEEEECCCCCEEEEEEEC
Confidence            56799999999953344444 5899999986  233 12333333 456789999999 67666666 789999987764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=4.9e-25  Score=176.85  Aligned_cols=225  Identities=11%  Similarity=0.126  Sum_probs=170.1

Q ss_pred             EEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-CceeEEeecc-ccceEEEE
Q 021121           79 AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRTFKEH-AYCVYNAT  156 (317)
Q Consensus        79 ~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-~~~v~~~~  156 (317)
                      ++.++.|++||+..+   + ...+..|...+.+++|+|+++ ++++++ ++.|++||+.+ ++.......+ ...+.+++
T Consensus        18 ~~~~~~i~~~d~~~~---~-~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR---K-MRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             CCCCEEEEEEETTTT---E-EEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             CCcceeEEEEeCCCC---c-eeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            456889999998765   3 334556889999999999998 787776 78999999998 7766655554 36789999


Q ss_pred             EecCCCCeEEEEe--CCC--eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEE-EEecCCcEEEEEccCCCccEEE
Q 021121          157 WNPRHSDVFCSAS--GDC--TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIA-SASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       157 ~~~~~~~~l~~~~--~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      |+|+ ++.+++++  .++  .|..++..+++ ...+..+ ..+..++|+| +++.++ ++..++.+++|++.........
T Consensus        92 ~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            9999 78888887  334  45555555444 3344433 3488999999 777666 7888999999997644334566


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC---------
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD---------  302 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------  302 (317)
                      +..+...+.+++|+|+++.+++++..++.+++|++.........+..|...+..++|+|+ +++|+.++.+         
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS-GDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT-SSEEEEEEEETTCCSCCSS
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC-CCEEEEEEcCCCCCccccc
Confidence            777888999999999999544455568999999987433355677778888999999999 7777777665         


Q ss_pred             --CcEEEEecCCCC
Q 021121          303 --ELVYVWQQGMDP  314 (317)
Q Consensus       303 --g~i~~w~~~~~~  314 (317)
                        +.|++||+...+
T Consensus       247 ~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          247 LDVRVQLMDMDGGN  260 (297)
T ss_dssp             EEEEEEEEETTSCS
T ss_pred             CceEEEEEecCCCC
Confidence              569999997653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=3.5e-25  Score=198.99  Aligned_cols=280  Identities=11%  Similarity=0.140  Sum_probs=190.1

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec---------------CCCCeeEEEecCCCC
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD---------------TADGVYDLAWSESHD   73 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~   73 (317)
                      .+..+.|.   ++.++.+..       +| | +||+.++......+....               +...|.+++|+|+ .
T Consensus        27 ~~~~~~w~---g~~~~~~~~-------~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~   93 (706)
T 2z3z_A           27 YVVGLQWM---GDNYVFIEG-------DD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G   93 (706)
T ss_dssp             -CTTCEEE---TTEEEEEET-------TE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-T
T ss_pred             cCCCCcCc---CCeEEEEeC-------Cc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-C
Confidence            34557787   355665554       55 8 999987653102222111               0156999999999 4


Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-----CceeEEeecc
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-----PTSVRTFKEH  148 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~  148 (317)
                       .++.+ .++.|++||+..+   + ...+..+...+.+++|+|+|+ .|+.+ .++.|++||+.+     ++.......+
T Consensus        94 -~~~~~-~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~  165 (706)
T 2z3z_A           94 -LVVLF-TQGGLVGFDMLAR---K-VTYLFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG  165 (706)
T ss_dssp             -EEEEE-ETTEEEEEETTTT---E-EEEEECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred             -eEEEE-ECCEEEEEECCCC---c-eEEccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCC
Confidence             44444 3599999998764   2 233445667788899999998 77775 679999999998     7665444333


Q ss_pred             ccc--------------eEEEEEecCCCCeEEEEe---------------------------------CCCeEEEEeCCC
Q 021121          149 AYC--------------VYNATWNPRHSDVFCSAS---------------------------------GDCTLRIWDVRE  181 (317)
Q Consensus       149 ~~~--------------v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~  181 (317)
                      ...              +.++.|+|+ ++.|++++                                 .+..|++||+.+
T Consensus       166 ~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          166 TETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             BTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            332              489999999 78888876                                 457899999988


Q ss_pred             CCceeeec--cCccceEEEEecCCCCcEEEEEecCC-----cEEEEEccCCCccEEEEe-cCCC---ceeEEEecC--CC
Q 021121          182 MGSTMIIP--AHEFEILACDWNKYDDCLIASASVDK-----SIKIWDVRNYRVPIAVLN-GHGY---AVRKVKFSP--HR  248 (317)
Q Consensus       182 ~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~-~~~~---~v~~~~~~~--~~  248 (317)
                      ++......  .+...+.+++|+| +++.|++++.++     .|++||+.+++....... .+..   .+..++|+|  ++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          245 GKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             TEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             CceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence            76544332  4567799999999 999888877775     899999988733222222 2222   346789999  99


Q ss_pred             CeeEEeeecCCeEEEEecccccceeeeeecccceeEe-EEEEeccCCeEEEeecCC----cEEEEecCC
Q 021121          249 RNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG-VDMSVLVEGLLASTGWDE----LVYVWQQGM  312 (317)
Q Consensus       249 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg----~i~~w~~~~  312 (317)
                      + ++++++.|+.++||++.........+..+...+.. ++|+|++..++++++.++    .|..|++..
T Consensus       324 ~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          324 Q-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             E-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             E-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            8 78889999999999887333345666677777776 799999433445555555    566666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=4.5e-24  Score=174.46  Aligned_cols=239  Identities=9%  Similarity=0.090  Sum_probs=174.3

Q ss_pred             EEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEE
Q 021121           66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRT  144 (317)
Q Consensus        66 ~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~  144 (317)
                      ..|.+++...+++++.++.|.+||..++   +....+..+...+ .++|+|+++.+++++..++.|.+||+.+++. ...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTL---EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTC---CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccc---ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            3466666667888888999999998866   4555555555666 9999999984444455589999999999887 667


Q ss_pred             eeccccceEEEEEecCCCCeEEEEeCCC---eEEEEeCCCCCceeeeccCccceEEEEecCCCCc-EEEEEecCCc-EEE
Q 021121          145 FKEHAYCVYNATWNPRHSDVFCSASGDC---TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-LIASASVDKS-IKI  219 (317)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~~~~~d~~-i~v  219 (317)
                      +..+..+..+++|+|+ +++++++..++   .|.+||+.+++.+..+.. .....+++|+| +++ ++++...++. |.+
T Consensus        79 ~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~  155 (331)
T 3u4y_A           79 IQEGQSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP-NGNGLILIDRSSANTVRR  155 (331)
T ss_dssp             EEECSSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT-TSSCEEEEEETTTTEEEE
T ss_pred             cccCCCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC-CCCEEEEEecCCCceEEE
Confidence            7666666555999999 77777555553   899999999888777664 34568999999 776 5555566688 999


Q ss_pred             EEccCCCccE---EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--eeeeecccceeEeEEEEeccCC
Q 021121          220 WDVRNYRVPI---AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--VGRYDHHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       220 ~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  294 (317)
                      |++.......   ............++|+|+++.+++++..++.|.+||+.+++..  +..+.. ...+..++|+|+ ++
T Consensus       156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spd-g~  233 (331)
T 3u4y_A          156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRD-GS  233 (331)
T ss_dssp             EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTT-SS
T ss_pred             EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCC-CC
Confidence            9987644321   1222344567899999999966666667899999999887630  444443 356789999999 56


Q ss_pred             eE-EEeecCCcEEEEecCCC
Q 021121          295 LL-ASTGWDELVYVWQQGMD  313 (317)
Q Consensus       295 ~l-~s~~~dg~i~~w~~~~~  313 (317)
                      +| ++...++.|.+||+...
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTT
T ss_pred             EEEEEEcCCCEEEEEECCCC
Confidence            44 55556889999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=4.9e-24  Score=175.32  Aligned_cols=274  Identities=13%  Similarity=0.059  Sum_probs=180.2

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCC--CeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD--GVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      .+++++  ++.++++...      ++.|++||.....    .+..+....  .+..++|+|++..+++++..++.|.+||
T Consensus         4 g~~~~~--~~~~~v~~~~------~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d   71 (349)
T 1jmx_B            4 GPALKA--GHEYMIVTNY------PNNLHVVDVASDT----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   71 (349)
T ss_dssp             CCCCCT--TCEEEEEEET------TTEEEEEETTTTE----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cccccC--CCEEEEEeCC------CCeEEEEECCCCc----EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe
Confidence            456777  6777777765      8999999997654    222223333  6889999999854555666789999999


Q ss_pred             eCCCCCCCCceeeccC------CcceEEEEEecCCCCEEEEEcCC------------CEEEEEEcCCCce---eEEeecc
Q 021121           90 TALPPTANPIRSLHEH------TREVHSADYNPTRRDSFITSSWD------------DTVKLWTVDRPTS---VRTFKEH  148 (317)
Q Consensus        90 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d------------g~v~iwd~~~~~~---~~~~~~~  148 (317)
                      +.++   +....+...      ...+..++|+|+++ ++++++.+            +.|.+||+.+++.   +..+. +
T Consensus        72 ~~t~---~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~  146 (349)
T 1jmx_B           72 LDTC---KNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M  146 (349)
T ss_dssp             TTTT---EEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred             CCCC---cEEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence            8765   444433322      23377899999998 77777754            8999999988543   33443 3


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc------------------------ceEEEEecCCC
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF------------------------EILACDWNKYD  204 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~i~~~~~~  204 (317)
                      ...+.+++|+|+ ++ +++++.  .|.+||+.+++....+.....                        ....+++++ +
T Consensus       147 ~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d  221 (349)
T 1jmx_B          147 PRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK-D  221 (349)
T ss_dssp             CSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC-C
Confidence            346889999999 56 444443  499999998887766543320                        233455554 2


Q ss_pred             CcEEEE-EecCCcEEEEEccCCCccEEEEecCCCceeEEEecC-CCCeeEEeeecCCeEEEEecccccceeeeeecccce
Q 021121          205 DCLIAS-ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF  282 (317)
Q Consensus       205 ~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  282 (317)
                      +..... ......+..+|..+.+........+...+..++|+| +++ +++++  ++.|.+||+.+++ ....+.. ...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~-~~~~~~~-~~~  296 (349)
T 1jmx_B          222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRK-LIKAANL-DHT  296 (349)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTTE-EEEEEEC-SSC
T ss_pred             CcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccCe-EEEEEcC-CCC
Confidence            211100 001111223555554433333344566788999999 998 46666  8899999998876 3344432 345


Q ss_pred             eEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          283 AVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       283 v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +.+++|+|+ +++|++++.++.|++||+.+.
T Consensus       297 ~~~~~~s~d-g~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          297 YYCVAFDKK-GDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             CCEEEECSS-SSCEEEESBSSEEEEEETTTT
T ss_pred             ccceEECCC-CCEEEEecCCCeEEEEecccc
Confidence            789999999 667777888999999999764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.7e-24  Score=192.83  Aligned_cols=282  Identities=12%  Similarity=0.075  Sum_probs=183.0

Q ss_pred             ceeEEEEecCCCCeEEEEEeccccc---ccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGI---LGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~---~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .|.+++|||  +++.++........   ..++.+++||+.....  ..+... .+...+..++|+||| +.|+.++. +.
T Consensus        62 ~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~  135 (723)
T 1xfd_A           62 RAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NN  135 (723)
T ss_dssp             TCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TE
T ss_pred             ccceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCce--EeccCCccccccccccEECCCC-CEEEEEEC-Ce
Confidence            489999999  56655554431100   1137899999987652  222211 234458899999998 57777765 78


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcc------------------eEEEEEecCCCCEEEEEcCCC-----------------
Q 021121           85 VKIYDTALPPTANPIRSLHEHTRE------------------VHSADYNPTRRDSFITSSWDD-----------------  129 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~l~~~~~dg-----------------  129 (317)
                      |++|++..+   +.......+...                  +.+++|+|||+ .|++++.++                 
T Consensus       136 i~~~~~~~g---~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~  211 (723)
T 1xfd_A          136 IYYCAHVGK---QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYP  211 (723)
T ss_dssp             EEEESSSSS---CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             EEEEECCCC---ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCC
Confidence            999998765   333333333332                  37899999998 777776442                 


Q ss_pred             -----------------EEEEEEcCCCceeEEeecc------ccceEEEEEecCCCCeEEEEeC----CCeEEEEeCCCC
Q 021121          130 -----------------TVKLWTVDRPTSVRTFKEH------AYCVYNATWNPRHSDVFCSASG----DCTLRIWDVREM  182 (317)
Q Consensus       130 -----------------~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~  182 (317)
                                       .|++||+.+++....+..+      ...+..++|+|+ ++++++...    +..|++||+.++
T Consensus       212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCC
Confidence                             8999999988765666543      567999999999 677766543    357999999988


Q ss_pred             Cceeeecc-Cccce----EEEEecCCCCcEEEE--EecCC------cEEEEEc-cCCCc-cEEEEecCCCceeE-EEecC
Q 021121          183 GSTMIIPA-HEFEI----LACDWNKYDDCLIAS--ASVDK------SIKIWDV-RNYRV-PIAVLNGHGYAVRK-VKFSP  246 (317)
Q Consensus       183 ~~~~~~~~-~~~~v----~~i~~~~~~~~~l~~--~~~d~------~i~v~d~-~~~~~-~~~~~~~~~~~v~~-~~~~~  246 (317)
                      +....+.. +...+    ..++|+| +++.|+.  +..++      .|.+||. ..... ....+..+...+.. ++|+|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp  369 (723)
T 1xfd_A          291 VCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (723)
T ss_dssp             CEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             cceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence            76655433 23333    3789999 8876654  45666      5677773 33220 02333333334544 69999


Q ss_pred             CCCeeEEeeecC--CeEEEEecccccc-eeeeeec---ccceeEeEEEEeccCCeEEEeecC
Q 021121          247 HRRNLLASCSYD--MTVCLWDFMVEDA-LVGRYDH---HTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       247 ~~~~~l~~~~~d--~~i~vwd~~~~~~-~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      +++.+++++..+  +.+++|++..... ....+..   |...+..++|+|++..++++.+..
T Consensus       370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            999544455554  7899999875431 2223332   566788999999943344444433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=1.8e-22  Score=167.00  Aligned_cols=272  Identities=10%  Similarity=0.058  Sum_probs=173.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-CCCCeeEEEecCCCCCeEEEEE-cCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-TADGVYDLAWSESHDSLLIAAV-ADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-~dg   83 (317)
                      +...+..++|+|  +++++++.+..-  ..++.|.+|+++.....+..+.... +......+++  ++. +|++++ .++
T Consensus        48 ~~~~p~~l~~sp--dg~~l~~~~~~~--~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~  120 (361)
T 3scy_A           48 EVANPSYLIPSA--DGKFVYSVNEFS--KDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGG  120 (361)
T ss_dssp             ECSCCCSEEECT--TSSEEEEEECCS--STTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTT
T ss_pred             cCCCCceEEECC--CCCEEEEEEccC--CCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCC
Confidence            345667799999  566555554310  0147999999987533344444333 4456777888  664 555554 688


Q ss_pred             eEEEEEeCCCCCCCCceeec-----------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce------e----
Q 021121           84 SVKIYDTALPPTANPIRSLH-----------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS------V----  142 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~----  142 (317)
                      .|.+|++.............           .+...+.+++|+|+++.++++...++.|.+|++.....      +    
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            99999997543222221111           12334688999999984455556689999999875432      1    


Q ss_pred             ---EEeeccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCCc--eeeec---cCccceEEEEecCCCCcEEEEEec
Q 021121          143 ---RTFKEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMGS--TMIIP---AHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       143 ---~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                         .........+..++|+|+ ++++++++ .++.|.+||+++++.  +..+.   .+......++|+| ++++|+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~  278 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNR  278 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEEC
T ss_pred             cccceecCCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECC
Confidence               111233456789999999 66665555 689999999986643  22222   2234467999999 8988866665


Q ss_pred             C--CcEEEEEcc--CCCc-cEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecc--cccceeeee-ecccceeE
Q 021121          214 D--KSIKIWDVR--NYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFM--VEDALVGRY-DHHTEFAV  284 (317)
Q Consensus       214 d--~~i~v~d~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~--~~~~~~~~~-~~~~~~v~  284 (317)
                      +  +.|.+|++.  +++. .+..+.. ...+..++|+|+++. |++++ .++.|.+|++.  +++ +.... ..+...+.
T Consensus       279 ~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~-l~~~~~~~~~v~v~~~d~~~g~-~~~~~~~~~~~~p~  355 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKY-LLVACRDTNVIQIFERDQATGL-LTDIKKDIKVDKPV  355 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCE-EEEEETTTTEEEEEEECTTTCC-EEECSCCEECSSEE
T ss_pred             CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCE-EEEEECCCCCEEEEEEECCCCc-EeecceeeeCCCCe
Confidence            4  889999996  2231 2333343 557889999999995 55555 77999997554  444 22221 22344678


Q ss_pred             eEEEE
Q 021121          285 GVDMS  289 (317)
Q Consensus       285 ~~~~~  289 (317)
                      ++.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.5e-22  Score=166.51  Aligned_cols=249  Identities=12%  Similarity=0.137  Sum_probs=169.6

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-ecCCCCeeEEEecCCCCCeEEEEE-cCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-FDTADGVYDLAWSESHDSLLIAAV-ADG   83 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~dg   83 (317)
                      +...+..++|+|  +++++++....    .++.|.+|++....  ...+.. ..+...+..++|+|++. +|++++ .++
T Consensus        38 ~~~~p~~~a~sp--dg~l~~~~~~~----~~~~v~~~~~~~g~--~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~  108 (347)
T 3hfq_A           38 ATQNPTYLALSA--KDCLYSVDKED----DEGGIAAWQIDGQT--AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKG  108 (347)
T ss_dssp             ECSCCCCEEECT--TCEEEEEEEET----TEEEEEEEEEETTE--EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTT
T ss_pred             ccCCcceEEEcc--CCeEEEEEecC----CCceEEEEEecCCc--EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCC
Confidence            445677899999  56555444310    15799999996543  233332 24566789999999984 666666 789


Q ss_pred             eEEEEEeCCCCCCCCceeecc---------CCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-CCceeE--Eeec-ccc
Q 021121           84 SVKIYDTALPPTANPIRSLHE---------HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVR--TFKE-HAY  150 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~--~~~~-~~~  150 (317)
                      .|.+|++........+..+..         +...+.+++|+|+++ ++++...++.|.+|++. +++...  .+.. ...
T Consensus       109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            999999964322233332221         123488999999999 88888889999999998 444322  2222 233


Q ss_pred             ceEEEEEecCCCC-eEEEEeCCCeEEEEeCCC--CCc--eeeeccCc------cceEEEEecCCCCcEE-EEEecCCcEE
Q 021121          151 CVYNATWNPRHSD-VFCSASGDCTLRIWDVRE--MGS--TMIIPAHE------FEILACDWNKYDDCLI-ASASVDKSIK  218 (317)
Q Consensus       151 ~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~v~~i~~~~~~~~~l-~~~~~d~~i~  218 (317)
                      .+..++|+|+ ++ ++++...++.+.+|++..  ++.  ...+....      ..+..++|+| ++++| ++...++.|.
T Consensus       188 ~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          188 GPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             CEEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEE
T ss_pred             CCceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEE
Confidence            6788999999 66 555567789999999875  332  12222222      3578899999 88866 5566689999


Q ss_pred             EEEccCCC--ccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecc
Q 021121          219 IWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFM  267 (317)
Q Consensus       219 v~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~  267 (317)
                      +||+....  ..+..+..+...+..++|+|+++. |++++ .++.|.+|++.
T Consensus       266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~-l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF-VVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE-EEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE-EEEEEcCCCcEEEEEEe
Confidence            99987322  234455556667899999999995 55555 55899999543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.93  E-value=2.3e-22  Score=166.55  Aligned_cols=267  Identities=6%  Similarity=-0.001  Sum_probs=177.4

Q ss_pred             ceEEEEecCCCCCcceeeeee--cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC-CCCCCCCceeecc-CCcceEEE
Q 021121           37 GRVHVLDLSPAAPALTELVAF--DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA-LPPTANPIRSLHE-HTREVHSA  112 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~-~~~~~~~~~~~~~-~~~~v~~~  112 (317)
                      +.|.+|+++.....+..+...  .....+..++|+|++ ++|++++.+ .|.+|++. .+   +....... ..+....+
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g---~~~~~~~~~~~g~~~~~   88 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPT---EIVHEASHPIGGHPRAN   88 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETT---EEEEEEEEECCSSGGGG
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCC---CEEEeeEeecCCCCccE
Confidence            578888886544334444332  233468899999998 578888877 89999986 43   22221110 01234568


Q ss_pred             EEecCCCC-EEEEEc-------------CCCEEEEEEcC-CCceeEEee----ccccceEEEEEecCCCCeEEEEe-CCC
Q 021121          113 DYNPTRRD-SFITSS-------------WDDTVKLWTVD-RPTSVRTFK----EHAYCVYNATWNPRHSDVFCSAS-GDC  172 (317)
Q Consensus       113 ~~~~~~~~-~l~~~~-------------~dg~v~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~-~dg  172 (317)
                      +|+|+++. +++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|+ ++.++++. .++
T Consensus        89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~  167 (365)
T 1jof_A           89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTAN  167 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTT
T ss_pred             EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCC
Confidence            89999973 244553             68999999997 455544443    24567999999999 67666655 468


Q ss_pred             eEEEEeCC-CCCce--eeec--cCccceEEEEecCCCCcEEEEEec-CCcEEEEEccC--CCcc--EEEEe-------cC
Q 021121          173 TLRIWDVR-EMGST--MIIP--AHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRN--YRVP--IAVLN-------GH  235 (317)
Q Consensus       173 ~i~i~d~~-~~~~~--~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~--~~~~--~~~~~-------~~  235 (317)
                      .|++||+. +++..  ..+.  .+...+..++|+| +++++++++. ++.|.+|++..  ++..  ...+.       +|
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            99999998 66543  2232  2355689999999 8888877664 68999998753  3321  11121       11


Q ss_pred             CC------ceeEEE-ecCCCCeeEEeeec-CC-----eEEEEecc-cccceee---eeecccceeEeEEEEe---ccCCe
Q 021121          236 GY------AVRKVK-FSPHRRNLLASCSY-DM-----TVCLWDFM-VEDALVG---RYDHHTEFAVGVDMSV---LVEGL  295 (317)
Q Consensus       236 ~~------~v~~~~-~~~~~~~~l~~~~~-d~-----~i~vwd~~-~~~~~~~---~~~~~~~~v~~~~~~~---~~~~~  295 (317)
                      ..      .+..++ |+|+|+. |+++.. ++     .|.+|++. +++ +..   ....+...+..++|+|   + +++
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~-l~v~~~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~d-g~~  323 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKY-MFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWS-DEW  323 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSE-EEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTC-TTE
T ss_pred             ccccccccccccEEEECCCCCE-EEEECCCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcC-CCE
Confidence            22      478999 9999995 555543 33     89999996 443 322   2333445577899999   7 778


Q ss_pred             EEEeec-CCcEEEEecCCC
Q 021121          296 LASTGW-DELVYVWQQGMD  313 (317)
Q Consensus       296 l~s~~~-dg~i~~w~~~~~  313 (317)
                      |++++. ++.|.+|+++.+
T Consensus       324 l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          324 MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSSCEEEEEEEETT
T ss_pred             EEEEEcCCCeEEEEEEchh
Confidence            887775 589999998654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.92  E-value=7e-24  Score=190.91  Aligned_cols=277  Identities=10%  Similarity=0.093  Sum_probs=186.7

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC---CCeeEEEecCCCCCeEEEEEc------
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA---DGVYDLAWSESHDSLLIAAVA------   81 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~------   81 (317)
                      .+++|+|  ++.++++..       +|.|++||+..+..  ..+.. .+.   ..+.+++|+||| ++|+.++.      
T Consensus        19 ~~~~~s~--dg~~~~~~~-------d~~i~~~~~~~g~~--~~~~~-~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~   85 (719)
T 1z68_A           19 FFPNWIS--GQEYLHQSA-------DNNIVLYNIETGQS--YTILS-NRTMKSVNASNYGLSPDR-QFVYLESDYSKLWR   85 (719)
T ss_dssp             CCCEESS--SSEEEEECT-------TSCEEEEESSSCCE--EEEEC-HHHHHTTTCSEEEECTTS-SEEEEEEEEEECSS
T ss_pred             CccEECC--CCeEEEEcC-------CCCEEEEEcCCCcE--EEEEc-cccccccceeeEEECCCC-CeEEEEecCceeEE
Confidence            4789999  567776654       88999999987652  22211 121   148999999999 57777765      


Q ss_pred             ---CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccccce-----
Q 021121           82 ---DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHAYCV-----  152 (317)
Q Consensus        82 ---dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v-----  152 (317)
                         ++.|++||+..++... ...+   ...+..++|+|||+ .|+.+. ++.|++||+.+++..... .++...+     
T Consensus        86 ~s~~~~i~~~d~~~g~~~~-~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~  159 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVR-GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIP  159 (719)
T ss_dssp             SCEEEEEEEEETTTTEECC-SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSC
T ss_pred             eecceEEEEEECCCCcccc-ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccc
Confidence               6899999998652100 0112   24688899999998 677765 789999999887664432 1222212     


Q ss_pred             ------------EEEEEecCCCCeEEEEeCCC----------------------------------eEEEEeCCCCCce-
Q 021121          153 ------------YNATWNPRHSDVFCSASGDC----------------------------------TLRIWDVREMGST-  185 (317)
Q Consensus       153 ------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~-  185 (317)
                                  .+++|+|+ ++.|++++.|.                                  .|++||+.+++.. 
T Consensus       160 ~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~  238 (719)
T 1z68_A          160 DWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG  238 (719)
T ss_dssp             CHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred             cceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence                        48999999 78888876542                                  7889999887642 


Q ss_pred             -------eeeccCccceEEEEecCCCCcEEEEEecCC----cEEEEE----ccCCCccEEEE----ecCCCcee-----E
Q 021121          186 -------MIIPAHEFEILACDWNKYDDCLIASASVDK----SIKIWD----VRNYRVPIAVL----NGHGYAVR-----K  241 (317)
Q Consensus       186 -------~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~v~d----~~~~~~~~~~~----~~~~~~v~-----~  241 (317)
                             ..+..+...+.+++|+| +++++++....+    .|.+||    ..+++. ....    ..|...+.     .
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~  316 (719)
T 1z68_A          239 PQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEHIEESRTGWAGGFFVST  316 (719)
T ss_dssp             CEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEEEEECSSSCSSSSSCCC
T ss_pred             eeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEecccccCCceEccccCCc
Confidence                   12235777899999999 788777754332    488899    665442 2222    45666676     8


Q ss_pred             EEecCCCCeeEE-eeecCC--eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec----CCcEEEEecCC
Q 021121          242 VKFSPHRRNLLA-SCSYDM--TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW----DELVYVWQQGM  312 (317)
Q Consensus       242 ~~~~~~~~~~l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~~w~~~~  312 (317)
                      +.|+|+|+.+++ +...+|  .|.+||+.+++  ...+..+...+..+.++ +++.+++++..    ++..++|.+..
T Consensus       317 ~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             CEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             cEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            899999986444 344555  57777876654  33455555567777777 63444444444    48899998865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=6.2e-24  Score=186.74  Aligned_cols=233  Identities=12%  Similarity=0.038  Sum_probs=173.7

Q ss_pred             CCCeeEEEecCCCCCeEEEEEc-CCeEEEEEeCCCCCCCCceeeccCC-cceEEEEEecCCCCEEEEEcC---CCEEEEE
Q 021121           60 ADGVYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTANPIRSLHEHT-REVHSADYNPTRRDSFITSSW---DDTVKLW  134 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~v~iw  134 (317)
                      ..+|.+++|+||| +.|+.++. +|+++||+++.+   . ...+..|. ..+..+.|+|+ + ++++++.   +....+|
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g---~-~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGG---E-TVKLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETT---E-EEECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCC---C-cEeeecccccccccccCCCC-e-EEEEeccCCCCcceEEE
Confidence            4569999999999 47777666 999999998543   3 33344444 68999999998 5 7777764   4555565


Q ss_pred             EcCC--CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          135 TVDR--PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       135 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      .+..  ......+.... .+...+|+|++..++++.+.++.+.+||+.+++....... ..  .+++|+| +++.+++++
T Consensus        94 ~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~sp-DG~~la~~~  168 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDI-RGDLIAGLG  168 (582)
T ss_dssp             EEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEE-ETTEEEEEE
T ss_pred             EEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECC-CCCEEEEEE
Confidence            5433  22222333222 3446788998555555655566666999988765544432 22  7899999 999999887


Q ss_pred             cC----CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC--eEEEEecccccceeeeeecccceeEeE
Q 021121          213 VD----KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM--TVCLWDFMVEDALVGRYDHHTEFAVGV  286 (317)
Q Consensus       213 ~d----~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~  286 (317)
                      .+    +.|++||+.+++  ...+..|...+..++|+|||+ .|+++..++  .|++||+.+++..  .+..|...+..+
T Consensus       169 ~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~  243 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSY  243 (582)
T ss_dssp             EEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHH
T ss_pred             EcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhh
Confidence            77    789999998766  346778888899999999999 577888888  8999999887633  666777777777


Q ss_pred             E--------EEeccCCeEEEeecCCcEEEEec
Q 021121          287 D--------MSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       287 ~--------~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +        |+|+ +.++++++.|+.+++|++
T Consensus       244 ~~~~~~~~~~spd-g~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          244 RPTAITWLGYLPD-GRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCSEEEEEEECTT-SCEEEEEEETTEEEEEET
T ss_pred             hhccccceeEcCC-CcEEEEEEcCCcEEEEEE
Confidence            7        9999 589999999999999998

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.7e-22  Score=165.21  Aligned_cols=246  Identities=11%  Similarity=0.057  Sum_probs=171.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecC----CCCeeEEEecCCCCCeEEEEE----
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDT----ADGVYDLAWSESHDSLLIAAV----   80 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~----   80 (317)
                      .+..++|+|+ ...++++...      ++.|.+||+..... ...+. ..+    ...+..++|+|+++ .++++.    
T Consensus        35 ~~~~~~~s~d-g~~l~v~~~~------~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~  104 (337)
T 1pby_B           35 TPMVPMVAPG-GRIAYATVNK------SESLVKIDLVTGET-LGRID-LSTPEERVKSLFGAALSPDGK-TLAIYESPVR  104 (337)
T ss_dssp             CCCCEEECTT-SSEEEEEETT------TTEEEEEETTTCCE-EEEEE-CCBTTEEEECTTCEEECTTSS-EEEEEEEEEE
T ss_pred             CccceEEcCC-CCEEEEEeCC------CCeEEEEECCCCCe-EeeEE-cCCcccccccccceEECCCCC-EEEEEecccc
Confidence            5889999994 2245555543      78999999987642 11111 111    12678899999984 677665    


Q ss_pred             --------cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce
Q 021121           81 --------ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV  152 (317)
Q Consensus        81 --------~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  152 (317)
                              .++.|.+||+..+   +....+.. ...+.+++|+|+++ .++++  ++.|.+||+.+++....+..+.. .
T Consensus       105 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~  176 (337)
T 1pby_B          105 LELTHFEVQPTRVALYDAETL---SRRKAFEA-PRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW-E  176 (337)
T ss_dssp             ECSSCEEECCCEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT-T
T ss_pred             cccccccccCceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc-C
Confidence                    5799999998755   44444443 45678899999998 56666  58899999999988777664431 1


Q ss_pred             EEEEEecCCCCeEEEEeCCC-----------------------eEEEEeCCCCCce-eeeccCccceEEEEecCCCCcEE
Q 021121          153 YNATWNPRHSDVFCSASGDC-----------------------TLRIWDVREMGST-MIIPAHEFEILACDWNKYDDCLI  208 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l  208 (317)
                      ..+.|+|++..+++++..++                       .|.+||+++++.. ..+..+...+.+++|+| +++++
T Consensus       177 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l  255 (337)
T 1pby_B          177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRA  255 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEE
T ss_pred             CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEE
Confidence            12378888443443333333                       4689999988764 22334556678999999 88888


Q ss_pred             EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      +++  ++.|++||+.+.+. +..+.. ...+.+++|+|+++ +|++++.++.|.+||+.+++ .+..+..+
T Consensus       256 ~~~--~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~i~v~d~~~~~-~~~~~~~~  320 (337)
T 1pby_B          256 FGA--YNVLESFDLEKNAS-IKRVPL-PHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLE-KKGQVDLP  320 (337)
T ss_dssp             EEE--ESEEEEEETTTTEE-EEEEEC-SSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCC-EEEEEECG
T ss_pred             EEe--CCeEEEEECCCCcC-cceecC-CCceeeEEECCCCC-EEEEEcCCCcEEEEECcCCc-EEEEEEcC
Confidence            887  68999999988653 444443 34678999999999 56667889999999999876 44454443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.8e-21  Score=175.30  Aligned_cols=287  Identities=11%  Similarity=0.058  Sum_probs=186.4

Q ss_pred             ceeEEEEecCCCCeEEEEEecc---cccccCceEEEEecCCCCCcc-eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            9 NGYSVKFSPFYESRLAVATAQN---FGILGNGRVHVLDLSPAAPAL-TELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~---~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .+.+++|||  +++.++.+...   +-...++.|++||+..+.... ..     ....+..++|+|||. .|+.+. ++.
T Consensus        61 ~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-----l~~~~~~~~~SPDG~-~la~~~-~~~  131 (719)
T 1z68_A           61 NASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-----LPRPIQYLCWSPVGS-KLAYVY-QNN  131 (719)
T ss_dssp             TCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----CCSSBCCEEECSSTT-CEEEEE-TTE
T ss_pred             ceeeEEECC--CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-----cCcccccceECCCCC-EEEEEE-CCe
Confidence            388999999  55555444321   000125799999998764200 11     135688999999994 777765 789


Q ss_pred             EEEEEeCCCCCCCCceee-ccCCcce-----------------EEEEEecCCCCEEEEEcCCC-----------------
Q 021121           85 VKIYDTALPPTANPIRSL-HEHTREV-----------------HSADYNPTRRDSFITSSWDD-----------------  129 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg-----------------  129 (317)
                      |++|++..++   ..... .++...+                 .+++|+|||+ .|++++.|.                 
T Consensus       132 i~~~~~~~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~  207 (719)
T 1z68_A          132 IYLKQRPGDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYP  207 (719)
T ss_dssp             EEEESSTTSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred             EEEEeCCCCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCc
Confidence            9999987652   22211 2222222                 4899999998 788776542                 


Q ss_pred             -----------------EEEEEEcCCCcee--EE------eeccccceEEEEEecCCCCeEEEEeCC----CeEEEEe--
Q 021121          130 -----------------TVKLWTVDRPTSV--RT------FKEHAYCVYNATWNPRHSDVFCSASGD----CTLRIWD--  178 (317)
Q Consensus       130 -----------------~v~iwd~~~~~~~--~~------~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d--  178 (317)
                                       .|++||+.+++..  ..      +..+...+..++|+|+ ++++++....    ..|.+||  
T Consensus       208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~  286 (719)
T 1z68_A          208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFR  286 (719)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEEC
T ss_pred             cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEccc
Confidence                             7899999887643  12      2357778999999999 7777764432    3488999  


Q ss_pred             --CCCCCceeee----ccCccceE-----EEEecCCCCcEEEE--EecCC--cEEEEEccCCCccEEEEecCCCceeEEE
Q 021121          179 --VREMGSTMII----PAHEFEIL-----ACDWNKYDDCLIAS--ASVDK--SIKIWDVRNYRVPIAVLNGHGYAVRKVK  243 (317)
Q Consensus       179 --~~~~~~~~~~----~~~~~~v~-----~i~~~~~~~~~l~~--~~~d~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~  243 (317)
                        +.+++....+    ..+...+.     .+.|+| +++.++.  ...++  .|.+||+.+.+  ...+..+...+..+.
T Consensus       287 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~  363 (719)
T 1z68_A          287 EDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIF  363 (719)
T ss_dssp             SSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEE
T ss_pred             CCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEE
Confidence              7776655444    35566665     789999 8775443  44555  57777776654  455555666678887


Q ss_pred             ecCCCCeeEEeeec----CCeEEEEeccc--ccceeeeee----cccceeEeEEEEeccCCeEEEeecC--CcEEEEecC
Q 021121          244 FSPHRRNLLASCSY----DMTVCLWDFMV--EDALVGRYD----HHTEFAVGVDMSVLVEGLLASTGWD--ELVYVWQQG  311 (317)
Q Consensus       244 ~~~~~~~~l~~~~~----d~~i~vwd~~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~~w~~~  311 (317)
                      ++ +++.+++++..    ++..++|.+..  +......+.    +|...+..+.|+|++..++++++.+  ..+.+|++.
T Consensus       364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR  442 (719)
T ss_dssp             EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred             EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence            77 77765555554    58889998765  211112222    2556788899999954455555543  467888876


Q ss_pred             CC
Q 021121          312 MD  313 (317)
Q Consensus       312 ~~  313 (317)
                      .+
T Consensus       443 ~g  444 (719)
T 1z68_A          443 TD  444 (719)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=4.7e-21  Score=159.93  Aligned_cols=280  Identities=10%  Similarity=0.031  Sum_probs=178.6

Q ss_pred             EEEecCCCCe-EEEEEecccccccCc--eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           13 VKFSPFYESR-LAVATAQNFGILGNG--RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        13 ~~~~p~~~~~-~~~~~~~~~~~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      .+|||  +++ ++.+...      +|  .|.+||+....  ...+. ..+...+..+.|+|++ ..|+.++.++.|.+||
T Consensus        41 ~~~Sp--Dg~~l~~~~~~------~g~~~l~~~d~~~g~--~~~lt-~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d  108 (388)
T 3pe7_A           41 KCFTR--DGSKLLFGGAF------DGPWNYYLLDLNTQV--ATQLT-EGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVD  108 (388)
T ss_dssp             CCBCT--TSCEEEEEECT------TSSCEEEEEETTTCE--EEECC-CSSCBCSSSCEECTTS-SEEEEEETTTEEEEEE
T ss_pred             ccCCC--CCCEEEEEEcC------CCCceEEEEeCCCCc--eEEee-eCCCCCccceEEcCCC-CEEEEEeCCCeEEEEE
Confidence            78999  455 4444432      44  58888887654  22221 1333344567899998 5888888889999999


Q ss_pred             eCCCCCCCCceeeccCCcceEEEE--EecCCCCEEEE----------------------EcCCCEEEEEEcCCCceeEEe
Q 021121           90 TALPPTANPIRSLHEHTREVHSAD--YNPTRRDSFIT----------------------SSWDDTVKLWTVDRPTSVRTF  145 (317)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~----------------------~~~dg~v~iwd~~~~~~~~~~  145 (317)
                      +..+   +.......+...+....  ++|++. .++.                      ...+..|.+||+.+++... +
T Consensus       109 ~~~g---~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l  183 (388)
T 3pe7_A          109 LATL---EENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-I  183 (388)
T ss_dssp             TTTC---CEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-E
T ss_pred             CCCC---cceeeeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-e
Confidence            9875   33333444455454444  478887 5553                      2345789999999886544 4


Q ss_pred             eccccceEEEEEec-CCCCeEEEEeCC------CeEEEEeCCCCCceeeeccCc--cceEEEEecCCCCcEEEEEec-CC
Q 021121          146 KEHAYCVYNATWNP-RHSDVFCSASGD------CTLRIWDVREMGSTMIIPAHE--FEILACDWNKYDDCLIASASV-DK  215 (317)
Q Consensus       146 ~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~-d~  215 (317)
                      ..+...+..+.|+| + ++.++....+      ..|.++|...++.. .+..+.  ..+..++|+| +++.|+..+. ++
T Consensus       184 ~~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~  260 (388)
T 3pe7_A          184 LQENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVP-DGSALVYVSYLKG  260 (388)
T ss_dssp             EEESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred             ecCCccccccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECC-CCCEEEEEecCCC
Confidence            44666789999999 8 6766665543      37888887765443 333333  3577899999 8886655443 22


Q ss_pred             ----cEEEEEccCCCcc-EEEEecCCC---ceeEEEecCCCCeeEEee--------ecCCeEEEEecccccceeeeeecc
Q 021121          216 ----SIKIWDVRNYRVP-IAVLNGHGY---AVRKVKFSPHRRNLLASC--------SYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       216 ----~i~v~d~~~~~~~-~~~~~~~~~---~v~~~~~~~~~~~~l~~~--------~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                          .|++||+.+++.. +..+.++..   ....++|+|+|+.++++.        ..+..|.+||+.+++  ...+..+
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~~  338 (388)
T 3pe7_A          261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT--QHRVARH  338 (388)
T ss_dssp             CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE--EEEEEEC
T ss_pred             CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc--eEEeccc
Confidence                3999999887631 222222100   022347999999644433        456789999998865  2344445


Q ss_pred             cc-----------eeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          280 TE-----------FAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       280 ~~-----------~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ..           .+..++|+|++..+++++..+|...+|.++..+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence            44           578899999943444455568888888876543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=5.7e-20  Score=152.20  Aligned_cols=243  Identities=8%  Similarity=0.035  Sum_probs=161.4

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecC-CCCCcceeeeeecCCCCeeEEEecCCCCC-eEEEEE------
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLS-PAAPALTELVAFDTADGVYDLAWSESHDS-LLIAAV------   80 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~------   80 (317)
                      .+..++|+|  +++++++.+.      + .|.+|++. ...  +..+......+.+.+++|+|++.. +++++.      
T Consensus        41 ~~~~~a~sp--dg~~l~~~~~------~-~v~~~~~~~~g~--~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~  109 (365)
T 1jof_A           41 PISWMTFDH--ERKNIYGAAM------K-KWSSFAVKSPTE--IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAV  109 (365)
T ss_dssp             CCSEEEECT--TSSEEEEEEB------T-EEEEEEEEETTE--EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred             CCcEEEECC--CCCEEEEEcc------c-eEEEEEECCCCC--EEEeeEeecCCCCccEEECCCCCEEEEEEecCCccee
Confidence            577899999  5666666553      4 89999997 432  222222222234667999999843 344542      


Q ss_pred             -------cCCeEEEEEeCCCCCCCCceeec----cCCcceEEEEEecCCCCEEEEEc-CCCEEEEEEcC-CCcee--EEe
Q 021121           81 -------ADGSVKIYDTALPPTANPIRSLH----EHTREVHSADYNPTRRDSFITSS-WDDTVKLWTVD-RPTSV--RTF  145 (317)
Q Consensus        81 -------~dg~i~v~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~-~~~~~--~~~  145 (317)
                             .+|.+.+|++....  +....+.    .+...+.+++|+|+|+ +++++. .++.|.+|+++ +++..  ..+
T Consensus       110 ~~~~~~~~~g~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~  186 (365)
T 1jof_A          110 YANPFYKFAGYGNVFSVSETG--KLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             EEEEESSSCCEEEEEEECTTC--CEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             ccceeecCCceEEEEccCCCC--cCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence                   68999999997421  2222222    2456799999999998 666554 46899999998 66543  233


Q ss_pred             e--ccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCC--CCCce---eeec---c----Ccc------ceEEEE-ecCC
Q 021121          146 K--EHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVR--EMGST---MIIP---A----HEF------EILACD-WNKY  203 (317)
Q Consensus       146 ~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~---~~~~---~----~~~------~v~~i~-~~~~  203 (317)
                      .  .+...+..++|+|+ ++.+++++ .++.|.+|++.  +++..   ..+.   .    +..      .+..++ |+| 
T Consensus       187 ~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-  264 (365)
T 1jof_A          187 DAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-  264 (365)
T ss_dssp             ECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-
T ss_pred             ecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-
Confidence            3  23556899999999 77766665 47899999865  44432   1121   1    121      478999 999 


Q ss_pred             CCcEEEEEecCC------cEEEEEcc-CCCccEE---EEecCCCceeEEEecC---CCCeeEEeeec-CCeEEEEecccc
Q 021121          204 DDCLIASASVDK------SIKIWDVR-NYRVPIA---VLNGHGYAVRKVKFSP---HRRNLLASCSY-DMTVCLWDFMVE  269 (317)
Q Consensus       204 ~~~~l~~~~~d~------~i~v~d~~-~~~~~~~---~~~~~~~~v~~~~~~~---~~~~~l~~~~~-d~~i~vwd~~~~  269 (317)
                      ++++|+++..+.      .|.+|++. +++ ...   ....+...+..++|+|   +++ +|++++. ++.|++|++...
T Consensus       265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          265 SGKYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEECCCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCeEEEEEEchh
Confidence            888877765432      89999996 333 222   2333555677899999   788 4666664 589999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=5.2e-20  Score=164.26  Aligned_cols=282  Identities=13%  Similarity=0.018  Sum_probs=179.9

Q ss_pred             cCcceeEEEEecCCCCeEEEEEe-cccccccCceEEEEecCCCCCcceeeeeecCCCCee---------EEEec--CCCC
Q 021121            6 TPFNGYSVKFSPFYESRLAVATA-QNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVY---------DLAWS--ESHD   73 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~-~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~   73 (317)
                      +...+..++|++  +..+.+... .     .++...||...... ....+  ..+...+.         ...|+  ||++
T Consensus        22 ~~~~~~~~~~s~--~~~~~~~~~~~-----~~~~~~l~~~~~~~-~~~~l--~~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           22 RSGRPACVGAVG--DEVWWVAPRPA-----EAGRATLVRRRADG-AEESA--LPAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             TCSCCEEEEEET--TEEEEEEEETT-----TTTEEEEEEECTTS-CEEES--SCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             cCCccceeEEcC--CeEEEEecCcc-----cCCcEEEEEECCCC-Cccee--CCCCccccccccccCCccceeeeecCCC
Confidence            456788999998  555555551 1     16788999874333 12222  23444444         55565  9985


Q ss_pred             CeEEEEEc-CCeEEEEEeC--C-CCCCCCceeecc-----CCcceEEEEEecCCCCEEEEEcCC----------CEEEEE
Q 021121           74 SLLIAAVA-DGSVKIYDTA--L-PPTANPIRSLHE-----HTREVHSADYNPTRRDSFITSSWD----------DTVKLW  134 (317)
Q Consensus        74 ~~l~~~~~-dg~i~v~~~~--~-~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~v~iw  134 (317)
                      .+|+.++. +..|.++++.  . +    ....+..     |...+..++|+|+|+ .|+.++.+          ..|++|
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~----~~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGA----VPRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCC----CCEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCC----CCEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEE
Confidence            41554443 4455555543  1 2    2223333     667889999999998 78777766          589999


Q ss_pred             EcCC------CceeEEee-ccccceEEEEEecCCCCeEEEEeCC--------CeEEEEeCC-CC---CceeeeccCccce
Q 021121          135 TVDR------PTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGD--------CTLRIWDVR-EM---GSTMIIPAHEFEI  195 (317)
Q Consensus       135 d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v  195 (317)
                      |+.+      ++ ...+. .+...+..++|+|+ ++.|+.++.+        ..|++||+. ++   +.......+...+
T Consensus       167 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          167 PLDGSAAADRSA-VRELSDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             ETTSTTTTCGGG-SEESSCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             ECCCCccccCCc-eeEEEecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence            9987      44 34555 55667888999999 7777766644        479999998 45   3333334456788


Q ss_pred             EEEEecCCCCcEEEEEecCC--cEEEEEccCCCccEEEEecCCCc---------eeEEEecCCCCeeEEeeecCCeEEEE
Q 021121          196 LACDWNKYDDCLIASASVDK--SIKIWDVRNYRVPIAVLNGHGYA---------VRKVKFSPHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~d~~i~vw  264 (317)
                      ..+.|+| ++++++++..++  .|.+||..+++  ...+..+...         +..++|+|+++ +++++.. +.++||
T Consensus       245 ~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~  319 (662)
T 3azo_A          245 AQAEWAP-DGSLIVATDRTGWWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLG  319 (662)
T ss_dssp             EEEEECT-TSCEEEEECTTSSCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEE
T ss_pred             cceEECC-CCeEEEEECCCCCeEEEEEECCCCc--eeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEE
Confidence            9999999 888888888888  56666665543  2333322221         56789999988 7888888 999999


Q ss_pred             ecccccceeeeeecccceeEeEEEEeccCCeE-EEeecCCcEEEEec
Q 021121          265 DFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL-ASTGWDELVYVWQQ  310 (317)
Q Consensus       265 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~~w~~  310 (317)
                      .+.........+..|...+..+ ++++++.++ ++++.+....+|.+
T Consensus       320 ~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          320 ILDPESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             EEETTTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEE
Confidence            5443222245667777777766 155534444 44455544444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.88  E-value=1.2e-19  Score=147.97  Aligned_cols=244  Identities=10%  Similarity=0.072  Sum_probs=179.9

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcC------------------------CeEEEEEeCCCCCCCCceeec-cCCcceEEEEE
Q 021121           60 ADGVYDLAWSESHDSLLIAAVAD------------------------GSVKIYDTALPPTANPIRSLH-EHTREVHSADY  114 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~  114 (317)
                      -..+.+++++|+| +++++...+                        +.|.+||..++   +...... .+-.....+++
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEE
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEE
Confidence            3569999999998 577777666                        46999997655   3333332 34457889999


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCc-eeEEee---------ccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCC
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFK---------EHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMG  183 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  183 (317)
                      +|++. ++++...++.|++||..... .+..+.         .+-..+..++++|+++.++++.+ .++.|++|| .+++
T Consensus        99 d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A           99 DTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             CTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             CCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence            99998 88888889999999986542 455552         23346899999995488888886 699999999 4566


Q ss_pred             ceeeeccC----------ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE--ecCCCceeEEEecC-----
Q 021121          184 STMIIPAH----------EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL--NGHGYAVRKVKFSP-----  246 (317)
Q Consensus       184 ~~~~~~~~----------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~~-----  246 (317)
                      .+..+...          -.....++++|..+.++++...++.|++||..+++. +..+  ..+...+..++|+|     
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~pg~~~~  255 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIPGFLFA  255 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEETTEEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecCCEEEE
Confidence            66655322          223789999993388888888899999999986553 5554  34566788999999     


Q ss_pred             -CCCeeEEeeecCCeEEEEecccccceeeee---ecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          247 -HRRNLLASCSYDMTVCLWDFMVEDALVGRY---DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       247 -~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                       ++. ++++...+..|++||..+++ ++..+   ..+...+.+++++|+ +.++++...++.|++|++...
T Consensus       256 ~~g~-~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          256 VNGK-PYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EECC-CCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEEC
T ss_pred             eCCC-EEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCcc
Confidence             332 22233345589999998876 44554   356667899999998 688888889999999998754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=1.4e-19  Score=163.34  Aligned_cols=278  Identities=10%  Similarity=0.115  Sum_probs=179.0

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCC-----CeeEEEecCCCCCeEEEEEcC-
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTAD-----GVYDLAWSESHDSLLIAAVAD-   82 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d-   82 (317)
                      ...+++|+|  ++.++++.        +|.|++||+.++..  ..+. ..+..     ....++||||| +.|+.++.+ 
T Consensus        18 ~~~~~~w~~--dg~~~~~~--------~~~i~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~   83 (740)
T 4a5s_A           18 KLYSLRWIS--DHEYLYKQ--------ENNILVFNAEYGNS--SVFL-ENSTFDEFGHSINDYSISPDG-QFILLEYNYV   83 (740)
T ss_dssp             CCCCEEECS--SSEEEEEE--------TTEEEEEETTTCCE--EEEE-CTTTTTTCCSCCCEEEECTTS-SEEEEEEEEE
T ss_pred             cccccEECC--CCcEEEEc--------CCcEEEEECCCCce--EEEE-echhhhhhcccccceEECCCC-CEEEEEECCe
Confidence            467899999  67777764        67999999987752  1221 12221     22447899998 577777765 


Q ss_pred             --------CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccccce-
Q 021121           83 --------GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHAYCV-  152 (317)
Q Consensus        83 --------g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v-  152 (317)
                              +.+.+||+.++   + ...+..|...+...+|+|||+ .|+.+. ++.|++|++.+++..+.. .++...+ 
T Consensus        84 ~~~r~~~~~~~~~~d~~~~---~-~~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~  157 (740)
T 4a5s_A           84 KQWRHSYTASYDIYDLNKR---Q-LITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY  157 (740)
T ss_dssp             ECSSSCEEEEEEEEETTTT---E-ECCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             eeEEEccceEEEEEECCCC---c-EEEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCceEEEcCCCCcccee
Confidence                    56779999875   2 234556778899999999998 666664 689999999887654321 1222212 


Q ss_pred             ----------------EEEEEecCCCCeEEEEeCC------------------------------------CeEEEEeCC
Q 021121          153 ----------------YNATWNPRHSDVFCSASGD------------------------------------CTLRIWDVR  180 (317)
Q Consensus       153 ----------------~~~~~~~~~~~~l~~~~~d------------------------------------g~i~i~d~~  180 (317)
                                      ..+.|+|+ ++.|+.++.|                                    ..|++||+.
T Consensus       158 ~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~  236 (740)
T 4a5s_A          158 NGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD  236 (740)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred             cCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence                            34899999 7777766422                                    158889998


Q ss_pred             C---CC--ceeeec------cCccceEEEEecCCCCcEEEEEec----CCcEEEEEccCCC-------ccEEEEecCCCc
Q 021121          181 E---MG--STMIIP------AHEFEILACDWNKYDDCLIASASV----DKSIKIWDVRNYR-------VPIAVLNGHGYA  238 (317)
Q Consensus       181 ~---~~--~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~v~d~~~~~-------~~~~~~~~~~~~  238 (317)
                      +   ++  ....+.      .+...+..++|+| +++.++....    +..|++||+.+++       ........|...
T Consensus       237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~  315 (740)
T 4a5s_A          237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW  315 (740)
T ss_dssp             SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred             CCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence            8   63  233333      2677799999999 8887666543    2369999998876       111112446555


Q ss_pred             ee-----EEEecCCCCeeEEeee-cCC--eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec----CCcEE
Q 021121          239 VR-----KVKFSPHRRNLLASCS-YDM--TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW----DELVY  306 (317)
Q Consensus       239 v~-----~~~~~~~~~~~l~~~~-~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~  306 (317)
                      +.     ...|+|+|+.+++..+ .+|  .|.+||..+++ . ..+......+..+. .++++.+++++..    .+...
T Consensus       316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~-~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~  392 (740)
T 4a5s_A          316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-C-TFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRN  392 (740)
T ss_dssp             SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-C-EESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred             EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-e-EecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence            54     7899999996442444 444  58888887654 2 23333344455543 3553445555544    34455


Q ss_pred             EEecC
Q 021121          307 VWQQG  311 (317)
Q Consensus       307 ~w~~~  311 (317)
                      +|.++
T Consensus       393 ly~v~  397 (740)
T 4a5s_A          393 LYKIQ  397 (740)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.87  E-value=7.2e-19  Score=140.58  Aligned_cols=237  Identities=9%  Similarity=0.074  Sum_probs=171.6

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec------cCCcceEEEEEe-cCCCCEEEEEcC-CCEE
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH------EHTREVHSADYN-PTRRDSFITSSW-DDTV  131 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~~l~~~~~-dg~v  131 (317)
                      -..+.++++++++ .++++...++.|.+||...    .....+.      .+...+..+++. +++. ++++... ++.|
T Consensus        29 ~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i  102 (286)
T 1q7f_A           29 FTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQI  102 (286)
T ss_dssp             BSCEEEEEECTTC-CEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEE
T ss_pred             cCCCceEEECCCC-CEEEEECCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEE
Confidence            3568899999998 5777778889999999652    2333332      244578899995 5654 5555533 8899


Q ss_pred             EEEEcCCCceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEE
Q 021121          132 KLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLI  208 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l  208 (317)
                      .+|| .+++.+..+.. +...+..++++|+ ++++++...++.|.+||.. ++....+.  .+...+..++++| +++++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~  178 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIF  178 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEE
Confidence            9999 56666666643 3356899999998 7788887788999999964 45555543  3344688999999 88888


Q ss_pred             EEEecCCcEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeeecCC-eEEEEecccccceeeeeeccc--cee
Q 021121          209 ASASVDKSIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDM-TVCLWDFMVEDALVGRYDHHT--EFA  283 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~--~~v  283 (317)
                      ++...++.|++||... + .+..+..+  ...+..++++|++. ++++...++ .|.+||.. ++ .+..+..+.  ..+
T Consensus       179 v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQ-LISALESKVKHAQC  253 (286)
T ss_dssp             EEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SC-EEEEEEESSCCSCE
T ss_pred             EEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC-CC-EEEEEcccCCCCcc
Confidence            8888889999999754 3 24445433  35788999999997 677776675 99999954 33 344444433  247


Q ss_pred             EeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          284 VGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       284 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+++++|+ ++++++ +.|+.|++|++...
T Consensus       254 ~~i~~~~~-g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          254 FDVALMDD-GSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEETT-TEEEEE-ETTTEEEEEECSCC
T ss_pred             eeEEECCC-CcEEEE-CCCCeEEEEEcccc
Confidence            79999998 666666 57999999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.86  E-value=5.8e-20  Score=153.64  Aligned_cols=278  Identities=9%  Similarity=-0.007  Sum_probs=173.2

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCC-eeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG-VYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      +.+++|||  +++.++.....   .++..|.+|++....  ...+  ...... ...+.|+|++ +.|+.++.++.|.+|
T Consensus        38 ~~~~~~Sp--dG~~l~~~~~~---~g~~~l~~~d~~~~~--~~~l--~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           38 FYQKCFTQ--DGKKLLFAGDF---DGNRNYYLLNLETQQ--AVQL--TEGKGDNTFGGFISTDE-RAFFYVKNELNLMKV  107 (396)
T ss_dssp             TTSCCBCT--TSCEEEEEECT---TSSCEEEEEETTTTE--EEEC--CCSSCBCTTTCEECTTS-SEEEEEETTTEEEEE
T ss_pred             eecCcCCC--CCCEEEEEEec---CCCceEEEEECCCCc--EEEe--ecCCCCccccceECCCC-CEEEEEEcCCcEEEE
Confidence            67789999  45544433321   014478888887653  2222  122333 3347899998 588888888899999


Q ss_pred             EeCCCCCCCCceeeccCCcceEE-------------------EEEecCCCCEEEEE-----cCCCEEEEEEcCCCceeEE
Q 021121           89 DTALPPTANPIRSLHEHTREVHS-------------------ADYNPTRRDSFITS-----SWDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~  144 (317)
                      ++..+   +.......+......                   +.|+|+++ .++..     ..+..|.+||+.+++....
T Consensus       108 d~~~~---~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          108 DLETL---EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             ETTTC---CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             ECCCC---CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEee
Confidence            98765   222222223222222                   34567766 44433     4567899999998876544


Q ss_pred             eeccccceEEEEEec-CCCCeEEEEeCC------CeEEEEeCCCCCceeeeccC-ccceEEEEecCCCCcEEEEEecC--
Q 021121          145 FKEHAYCVYNATWNP-RHSDVFCSASGD------CTLRIWDVREMGSTMIIPAH-EFEILACDWNKYDDCLIASASVD--  214 (317)
Q Consensus       145 ~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d--  214 (317)
                      . .+...+..+.|+| + +..++..+.+      ..|.+||+..++........ ...+..++|+| +++.|+.++.+  
T Consensus       184 ~-~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~  260 (396)
T 3c5m_A          184 H-QDTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKG  260 (396)
T ss_dssp             E-EESSCEEEEEEETTE-EEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred             c-cCCcccccceECCCC-CCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCC
Confidence            4 4566789999999 5 6655554443      46889998765433332211 33578899999 88877666543  


Q ss_pred             ---CcEEEEEccCCCccEEEEecCCCceeEEEecC-CCCeeEEeee----------------cCCeEEEEecccccceee
Q 021121          215 ---KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLASCS----------------YDMTVCLWDFMVEDALVG  274 (317)
Q Consensus       215 ---~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~----------------~d~~i~vwd~~~~~~~~~  274 (317)
                         +.|++||+.+++.  ..+..... .. +.|+| +++ +++.++                .++.|.+||+.+++.  .
T Consensus       261 ~~~~~l~~~d~~~g~~--~~l~~~~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~  333 (396)
T 3c5m_A          261 QTDRVIYKANPETLEN--EEVMVMPP-CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--Q  333 (396)
T ss_dssp             TCCEEEEEECTTTCCE--EEEEECCS-EE-EEEECSSSS-EEEEEECCC----------CCCCCCEEEEEETTTTBC--C
T ss_pred             CccceEEEEECCCCCe--EEeeeCCC-CC-CCccCCCCc-eEEEecCCcceeeccccccccCCCCcEEEEecccCce--E
Confidence               4499999987653  22222222 33 89999 998 566543                347899999987652  2


Q ss_pred             eeecccc-----------eeEeEEEEeccCCeEEEe-ecCCcEEEEecCC
Q 021121          275 RYDHHTE-----------FAVGVDMSVLVEGLLAST-GWDELVYVWQQGM  312 (317)
Q Consensus       275 ~~~~~~~-----------~v~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~  312 (317)
                      .+..+..           .+..++|+|+ ++.|+.+ ..++...+|.++.
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          334 KLCKHSTSWDVLDGDRQITHPHPSFTPN-DDGVLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTSSCEEEEEEC
T ss_pred             EccCCCCccccccccccCCCCCceEccC-CCeEEEEecCCCCceEEEEEE
Confidence            3444443           2567899999 5555544 4566666666653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=1.9e-18  Score=142.60  Aligned_cols=260  Identities=12%  Similarity=0.044  Sum_probs=174.2

Q ss_pred             cCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----------cCCeEEEEEeCCCCCCCCceeecc
Q 021121           35 GNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----------ADGSVKIYDTALPPTANPIRSLHE  104 (317)
Q Consensus        35 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~~  104 (317)
                      .++.|++||..+...    +........- .++|+|++ ++++++.          .++.|.+||..+.   +.+..+..
T Consensus        29 ~d~~v~v~D~~t~~~----~~~i~~g~~p-~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---~~~~~i~~   99 (361)
T 2oiz_A           29 TESRVHVYDYTNGKF----LGMVPTAFNG-HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKL---TFEKEISL   99 (361)
T ss_dssp             GGCEEEEEETTTCCE----EEEEECCEEE-EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTC---CEEEEEEE
T ss_pred             ccCeEEEEECCCCeE----EEEecCCCCC-ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCC---cEEEEEEc
Confidence            478999999876542    2222222233 89999998 4676665          3577999998754   44444332


Q ss_pred             ------CCcceEEEEEecCCCCEEEEEcC--CCEEEEEEcCCCceeEE-eeccccceEEEEEecCCCCeEEEEeCCCeEE
Q 021121          105 ------HTREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPRHSDVFCSASGDCTLR  175 (317)
Q Consensus       105 ------~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  175 (317)
                            +......++++|+|+ +|+++..  ++.|.+||+.+++.+.. +.. .. ...+.+.|++...+++.+.||.+.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~  176 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLL  176 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEE
T ss_pred             CccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEE
Confidence                  224466789999998 7776653  68999999999988776 542 22 233667887667888999999999


Q ss_pred             EEeCCC-CCcee------eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE-EEecC----------CC
Q 021121          176 IWDVRE-MGSTM------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA-VLNGH----------GY  237 (317)
Q Consensus       176 i~d~~~-~~~~~------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~----------~~  237 (317)
                      +|++.. ++...      .+.....+ ..+.++| ++..++..+.++.+.++|+......+. .+...          ..
T Consensus       177 ~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  254 (361)
T 2oiz_A          177 TINLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG  254 (361)
T ss_dssp             EEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred             EEEECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence            999865 33331      11112222 2333455 566666677889999999876442221 11100          01


Q ss_pred             ceeEEEecCCCCeeEEeee----------cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          238 AVRKVKFSPHRRNLLASCS----------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                      ....++|+|+++.++++..          ..+.|.+||+.+.+ .+..+..+.  +.+++|+|+ +++|++++. +.|.+
T Consensus       255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spd-g~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQ-RNLMLTLDG-GNVNV  329 (361)
T ss_dssp             CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETT-TTEEEEECS-SCEEE
T ss_pred             CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCC-CCEEEEeCC-CeEEE
Confidence            1223789999886555443          13589999999887 566777666  899999999 678888776 99999


Q ss_pred             EecCCC
Q 021121          308 WQQGMD  313 (317)
Q Consensus       308 w~~~~~  313 (317)
                      ||..+.
T Consensus       330 ~D~~t~  335 (361)
T 2oiz_A          330 YDISQP  335 (361)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            998875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=6.7e-18  Score=137.69  Aligned_cols=249  Identities=12%  Similarity=0.094  Sum_probs=177.7

Q ss_pred             cceeEEEEecCCCCeEEEEEeccc------------------ccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNF------------------GILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS   69 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~------------------~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~   69 (317)
                      ..+.+++++|  ++.++++.....                  ....++.|.+||..+..  +.......+-.....++++
T Consensus        24 ~~v~~va~d~--~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           24 GQVSGVALDS--KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             SCEEEEEECT--TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTTTCSSEEEEEEC
T ss_pred             CCceEEEECC--CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCCccCCceEEEEC
Confidence            5688999999  577777765420                  00112579999987654  2211111234578899999


Q ss_pred             CCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---------ccCCcceEEEEEec-CCCCEEEEEc-CCCEEEEEEcCC
Q 021121           70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---------HEHTREVHSADYNP-TRRDSFITSS-WDDTVKLWTVDR  138 (317)
Q Consensus        70 ~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~~l~~~~-~dg~v~iwd~~~  138 (317)
                      |++ .++++...++.|++|+....  ...+..+         ..+-.....++++| ++. ++++.+ .++.|++|+ .+
T Consensus       100 ~~g-~l~v~d~~~~~v~~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          100 TDG-NYWVTDVALHQVFKLDPHSK--EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             TTS-CEEEEETTTTEEEEECTTCS--SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TT
T ss_pred             CCC-CEEEEECCCCEEEEEeCCCC--eEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CC
Confidence            998 48888888899999997532  1133333         23445788999999 565 777776 689999999 45


Q ss_pred             CceeEEeecc----------ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCc
Q 021121          139 PTSVRTFKEH----------AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDC  206 (317)
Q Consensus       139 ~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~  206 (317)
                      ++.+..+...          -..+..++++|+++.++++...++.|++||..+++.+..+.  .+...+..++++|  +.
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~  252 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GF  252 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CE
Confidence            6666666422          23489999999867788888889999999998888877763  3455688899988  33


Q ss_pred             EEEEEe-------cCCcEEEEEccCCCccEEEE---ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          207 LIASAS-------VDKSIKIWDVRNYRVPIAVL---NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       207 ~l~~~~-------~d~~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .+.+.+       .+..|++||..+++. +..+   ..+...+..++++|+|. ++++...++.|++|++...
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCE-EEEECCSSSCCSSEEEEEECTTSE-EEEEESSSCCEEEEEEEEC
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcCCCCccCCeeEEEECCCCC-EEEEECCCCEEEEEeCCcc
Confidence            333332       344899999988764 5555   35666789999999995 8888888999999997653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.85  E-value=5.3e-17  Score=130.36  Aligned_cols=280  Identities=9%  Similarity=-0.026  Sum_probs=189.4

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      ..+.+++++|  ++.+.++...      ++.|.+||.. ..  ............+.++++.+++ .++++...++.|..
T Consensus        15 ~~~~~i~~d~--~g~l~v~~~~------~~~v~~~d~~-~~--~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           15 TGPYGITVSD--KGKVWITQHK------ANMISCINLD-GK--ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGR   82 (299)
T ss_dssp             CCEEEEEECT--TSCEEEEETT------TTEEEEECTT-CC--EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred             CCccceEECC--CCCEEEEecC------CCcEEEEcCC-CC--eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEE
Confidence            5789999999  6777777654      6789999987 33  2222212245678999999987 46666655788999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-eeccccceEEEEEecCCCCeEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      |+.. + . .....+......+.++++.+++. ++++...++.|.+||. +++.... .......+..+++.++ +.+.+
T Consensus        83 ~~~~-g-~-~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v  156 (299)
T 2z2n_A           83 ITKK-G-I-IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD-NALWF  156 (299)
T ss_dssp             ECTT-S-C-EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-SCEEE
T ss_pred             ECCC-C-c-EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC-CCEEE
Confidence            9865 2 1 11111222455788999999887 7777777889999998 5544322 2223456899999998 77777


Q ss_pred             EEeCCCeEEEEeCCCCCceee-eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEec
Q 021121          167 SASGDCTLRIWDVREMGSTMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS  245 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~  245 (317)
                      +...++.|..||. +++.... .......+..+++++ +++++++...++.|.+||. +++........+...+.+++++
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~  233 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAG  233 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEEC
Confidence            7777889999998 5554332 233345678999999 7887777767889999998 5443222223345678999999


Q ss_pred             CCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       246 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +++. ++++...++.|..||. +++........+...+.++++ ++ +.++++.. .+.+..++....
T Consensus       234 ~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~-g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          234 AGID-LWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DG-ETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             STTC-EEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CS-SCEEEEET-TTEEEEEEEC--
T ss_pred             CCCC-EEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cC-CCEEEEec-CCcEEEEEcCcc
Confidence            9987 5666556789999998 333111112344567889999 65 56555554 566777776653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.4e-19  Score=163.25  Aligned_cols=239  Identities=11%  Similarity=0.130  Sum_probs=163.7

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCc-----ceEEEEEecCCCCEEEEEcCC--------
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTR-----EVHSADYNPTRRDSFITSSWD--------  128 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d--------  128 (317)
                      ....++|+|++ .+++++  |+.|++||+.++   +....+..|..     ....+.|+|||+ .|+.++.+        
T Consensus        18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYG---NSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSS-EEEEEE--TTEEEEEETTTC---CEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCE
T ss_pred             cccccEECCCC-cEEEEc--CCcEEEEECCCC---ceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEcc
Confidence            46689999998 577775  899999999876   33444555443     234588999998 78877765        


Q ss_pred             -CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-ccCccce-----------
Q 021121          129 -DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-PAHEFEI-----------  195 (317)
Q Consensus       129 -g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------  195 (317)
                       +.+.+||+.+++.. .+..+...+...+|+|+ ++.|+.+ .++.|++||+.+++..+.. .++...+           
T Consensus        91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPd-G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             ceEEEEEECCCCcEE-EcccCCCcceeeEECCC-CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence             66789999988754 45566778999999999 7777666 4689999999887654321 1222212           


Q ss_pred             ------EEEEecCCCCcEEEEEecCC------------------------------------cEEEEEccC---CCc-cE
Q 021121          196 ------LACDWNKYDDCLIASASVDK------------------------------------SIKIWDVRN---YRV-PI  229 (317)
Q Consensus       196 ------~~i~~~~~~~~~l~~~~~d~------------------------------------~i~v~d~~~---~~~-~~  229 (317)
                            ..+.|+| +++.|+.++.|.                                    .|++||+.+   ++. ..
T Consensus       168 e~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          168 EVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             hhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                  3589999 999888875332                                    478889887   531 12


Q ss_pred             EEEe------cCCCceeEEEecCCCCeeEEeeec----CCeEEEEeccccc----ce-eeee--ecccceeE-----eEE
Q 021121          230 AVLN------GHGYAVRKVKFSPHRRNLLASCSY----DMTVCLWDFMVED----AL-VGRY--DHHTEFAV-----GVD  287 (317)
Q Consensus       230 ~~~~------~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~vwd~~~~~----~~-~~~~--~~~~~~v~-----~~~  287 (317)
                      ..+.      +|...+..++|+|+++ +++....    +..|.+||+.+++    +. ...+  ..|...+.     ...
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~  325 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH  325 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence            3333      2777899999999998 4554432    3379999998875    11 1122  44555444     789


Q ss_pred             EEeccCCeEE-Eee-cCC--cEEEEecCCC
Q 021121          288 MSVLVEGLLA-STG-WDE--LVYVWQQGMD  313 (317)
Q Consensus       288 ~~~~~~~~l~-s~~-~dg--~i~~w~~~~~  313 (317)
                      |+|+ ++.|+ ..+ .+|  .|++|++...
T Consensus       326 fspD-G~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          326 FTLD-GNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             ECTT-SSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EcCC-CCEEEEEEEcCCCceEEEEEECCCC
Confidence            9999 55544 554 444  5777777653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=2.2e-18  Score=143.79  Aligned_cols=239  Identities=12%  Similarity=0.048  Sum_probs=157.6

Q ss_pred             EEecCCCCCeEEEEEc-CCe--EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121           66 LAWSESHDSLLIAAVA-DGS--VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV  142 (317)
Q Consensus        66 ~~~~~~~~~~l~~~~~-dg~--i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  142 (317)
                      .+|+|||. .|+.++. +|.  |.+||+..+   +.......+...+..+.|+|+++ .|+.++.++.|++||+.+++..
T Consensus        41 ~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A           41 KCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEEN  115 (388)
T ss_dssp             CCBCTTSC-EEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEE
T ss_pred             ccCCCCCC-EEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcce
Confidence            78999995 6666666 674  777777654   44444445555555678999998 8888888899999999999877


Q ss_pred             EEeeccccceEEEE--EecCCCCeEEEE----------------------eCCCeEEEEeCCCCCceeeeccCccceEEE
Q 021121          143 RTFKEHAYCVYNAT--WNPRHSDVFCSA----------------------SGDCTLRIWDVREMGSTMIIPAHEFEILAC  198 (317)
Q Consensus       143 ~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i  198 (317)
                      ..+..+...+....  ++|+ +..++..                      ..+..|.+||+.+++... +..+...+..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~  193 (388)
T 3pe7_A          116 VVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHP  193 (388)
T ss_dssp             EEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEE
T ss_pred             eeeechhhcccccceeECCC-CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCcccccc
Confidence            66665555554444  4777 6666532                      245789999999876543 44456678899


Q ss_pred             EecCCCCcEEEEEecC------CcEEEEEccCCCccEEEEecCC--CceeEEEecCCCCeeEEeeecCC----eEEEEec
Q 021121          199 DWNKYDDCLIASASVD------KSIKIWDVRNYRVPIAVLNGHG--YAVRKVKFSPHRRNLLASCSYDM----TVCLWDF  266 (317)
Q Consensus       199 ~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~----~i~vwd~  266 (317)
                      +|+|.+++.|+....+      ..|.++|.....  ...+..+.  ..+..++|+|+|+.+++.+..++    .|.+||+
T Consensus       194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          194 IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence            9998556677666543      368888876543  33444343  35788999999996444444333    3999999


Q ss_pred             ccccc-eeeeeecccce---eEeEEEEeccCCeEEEe--------ecCCcEEEEecCCC
Q 021121          267 MVEDA-LVGRYDHHTEF---AVGVDMSVLVEGLLAST--------GWDELVYVWQQGMD  313 (317)
Q Consensus       267 ~~~~~-~~~~~~~~~~~---v~~~~~~~~~~~~l~s~--------~~dg~i~~w~~~~~  313 (317)
                      .+++. .+..+..+...   ...+.|+|++..++++.        ..+..|++||+...
T Consensus       272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            88762 22222221111   22347999944344332        45678999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=1.1e-17  Score=133.77  Aligned_cols=238  Identities=11%  Similarity=0.151  Sum_probs=168.1

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEec-CCCCCeEEEEEc-
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWS-ESHDSLLIAAVA-   81 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~-~~~~~~l~~~~~-   81 (317)
                      ..+.+++++|  ++.+.++...      ++.|.+||.+..  ....+...    .+...+..+++. +++ .++++... 
T Consensus        30 ~~p~~v~~~~--~g~l~v~~~~------~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~   98 (286)
T 1q7f_A           30 TEPSGVAVNA--QNDIIVADTN------NHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSP   98 (286)
T ss_dssp             SCEEEEEECT--TCCEEEEEGG------GTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGG
T ss_pred             CCCceEEECC--CCCEEEEECC------CCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCC
Confidence            4678999999  5677777654      789999997632  12222111    123468899994 665 45555533 


Q ss_pred             CCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEEEe
Q 021121           82 DGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWN  158 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~  158 (317)
                      ++.|.+|+. .+   +.+..+. .+...+.+++++|++. ++++...++.|.+||.. ++....+.  .+...+..++++
T Consensus        99 ~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~  172 (286)
T 1q7f_A           99 THQIQIYNQ-YG---QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVN  172 (286)
T ss_dssp             GCEEEEECT-TS---CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEEC
T ss_pred             CCEEEEECC-CC---cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEEC
Confidence            789999993 33   3333332 3445789999999987 88888888999999964 55555554  234568999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC--ccceEEEEecCCCCcEEEEEecCC-cEEEEEccCCCccEEEEecC
Q 021121          159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH--EFEILACDWNKYDDCLIASASVDK-SIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~  235 (317)
                      |+ ++++++...++.|++||.. ++.+..+...  ...+..+++++ +++++++...++ .|.+||... + .+..+..+
T Consensus       173 ~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g-~-~~~~~~~~  247 (286)
T 1q7f_A          173 DK-QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDG-Q-LISALESK  247 (286)
T ss_dssp             SS-SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTS-C-EEEEEEES
T ss_pred             CC-CCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCC-C-EEEEEccc
Confidence            98 7788777889999999974 4555555433  25678999999 888888887776 999999643 3 34454443


Q ss_pred             C--CceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          236 G--YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       236 ~--~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .  ..+.+++++|+++ ++++ +.++.|++|++...
T Consensus       248 ~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          248 VKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             SCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCC
T ss_pred             CCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccc
Confidence            3  3477999999996 6666 57999999997654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=5.3e-19  Score=145.20  Aligned_cols=235  Identities=11%  Similarity=0.035  Sum_probs=154.9

Q ss_pred             EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC-cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE
Q 021121           65 DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHT-REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        65 ~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  143 (317)
                      .+++++++ .++++++.++.|.+||+.++   +....+..+. ..+..++|+|+++.+++++..++.|.+||+.+++...
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            35677776 68999999999999998765   4444444332 2577899999997455666788999999999988877


Q ss_pred             Eeecc------ccceEEEEEecCCCCeEEEEeCC------------CeEEEEeCCCCCc---eeeeccCccceEEEEecC
Q 021121          144 TFKEH------AYCVYNATWNPRHSDVFCSASGD------------CTLRIWDVREMGS---TMIIPAHEFEILACDWNK  202 (317)
Q Consensus       144 ~~~~~------~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~  202 (317)
                      .+...      ...+..++|+|+ ++.+++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~  157 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD  157 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred             EEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence            66532      233788999999 7777777755            8999999987543   23333 334588899999


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecCC-C-----------------------ceeEEEecCCCCeeEEeeecC
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG-Y-----------------------AVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~-----------------------~v~~~~~~~~~~~~l~~~~~d  258 (317)
                       +++ +++++  +.|++||..+++. ...+..+. .                       ....+++++++..........
T Consensus       158 -dg~-l~~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          158 -DGS-LYVAG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             -TSC-EEEES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             -CCc-EEEcc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence             888 55443  3499999988663 44443221 0                       234466665543111111111


Q ss_pred             CeEEEEecccccceeeeeecccceeEeEEEEe-ccCCeEEEeecCCcEEEEecCCC
Q 021121          259 MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV-LVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       259 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..+..+|..+++........+...+..++|+| + +++++++  ++.|.+||+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTT
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccC
Confidence            12223555554432333334556788999999 8 6777777  889999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.84  E-value=1.6e-17  Score=135.68  Aligned_cols=269  Identities=11%  Similarity=0.058  Sum_probs=176.6

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ...+.++.|+|.  ...++....      ++.++.|.-   . ...  ....+...+.+++|+|++ .+++++..++.|.
T Consensus         5 ~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~   69 (333)
T 2dg1_A            5 QQDLPTLFYSGK--SNSAVPIIS------ESELQTITA---E-PWL--EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIF   69 (333)
T ss_dssp             -CCCCBCCSCGG--GGCSSCCCC------GGGSCEEEC---E-EEE--EEESSCCCEEEEEECTTS-CEEEEETTTCEEE
T ss_pred             ccccceeeecCC--ccceeEEee------cccCccccc---c-eeE--EEeccCccccCcEECCCC-CEEEEECCCCEEE
Confidence            345788999994  333332222      668888821   1 111  222455678999999998 4777788889999


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC----CEEEEEEcCCCceeEEee--ccccceEEEEEecC
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD----DTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPR  160 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~  160 (317)
                      +||...+   +.......+...+.+++++|++. ++++...+    +.|.+||.++++....+.  .....+..++++|+
T Consensus        70 ~~d~~~~---~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A           70 KINPETK---EIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK  145 (333)
T ss_dssp             EECTTTC---CEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred             EEeCCCC---cEEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence            9998654   32222224567899999999987 77776665    689999998776543332  23456899999998


Q ss_pred             CCCeEEEEeC------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-EEEecCCcEEEEEccCCCccEEE--
Q 021121          161 HSDVFCSASG------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-ASASVDKSIKIWDVRNYRVPIAV--  231 (317)
Q Consensus       161 ~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~--  231 (317)
                       ++++++...      .+.|..+|..+++... +......+..++|+| +++.+ ++...++.|.+||..........  
T Consensus       146 -g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~  222 (333)
T 2dg1_A          146 -GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFG  222 (333)
T ss_dssp             -SCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred             -CCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCccccc
Confidence             777766553      3567777766544332 222334578899999 87744 55556789999999642211211  


Q ss_pred             ------EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc------eeEeEEEEeccCCeEEEe
Q 021121          232 ------LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE------FAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       232 ------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~  299 (317)
                            +.++ ..+..+++++++. ++++...++.|.+||.. ++ .+..+..+..      .+.+++|+|+ +..|+.+
T Consensus       223 ~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~d-g~~L~v~  297 (333)
T 2dg1_A          223 ATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPG-TNQLIIC  297 (333)
T ss_dssp             EEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTT-SCEEEEE
T ss_pred             ceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC-CC-EEEEEEcCCCccccccCcceEEECCC-CCEEEEE
Confidence                  1122 3678899999997 66666677899999984 33 3344443332      6889999988 5555544


Q ss_pred             ecC
Q 021121          300 GWD  302 (317)
Q Consensus       300 ~~d  302 (317)
                      +.+
T Consensus       298 ~~~  300 (333)
T 2dg1_A          298 SND  300 (333)
T ss_dssp             EEC
T ss_pred             eCc
Confidence            444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=2.1e-17  Score=135.73  Aligned_cols=265  Identities=9%  Similarity=0.076  Sum_probs=169.1

Q ss_pred             cceeEEEEecCCCCeEEEEEeccc--ccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNF--GILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---   82 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~--~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---   82 (317)
                      ..+...++  + ...++.......  ....++.|.+|++....  ...+      ..+..++|+|+|. .|+..+.+   
T Consensus        15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l------~~~~~~~~SpDg~-~la~~~~~~~~   82 (347)
T 2gop_A           15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNA--RRFI------ENATMPRISPDGK-KIAFMRANEEK   82 (347)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCC--EEEE------ESCEEEEECTTSS-EEEEEEEETTT
T ss_pred             EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCc--eEEc------ccCCCeEECCCCC-EEEEEEeccCC
Confidence            44566777  3 455555432110  00125689999988754  2222      4688899999995 66665543   


Q ss_pred             Ce--EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC---------------------------CCEEEE
Q 021121           83 GS--VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW---------------------------DDTVKL  133 (317)
Q Consensus        83 g~--i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------dg~v~i  133 (317)
                      +.  |.+|++..+   +... +..+.. +..+.|+|+++ .|+.++.                           ...|.+
T Consensus        83 ~~~~l~~~~~~~g---~~~~-l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (347)
T 2gop_A           83 KVSEIWVADLETL---SSKK-ILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI  156 (347)
T ss_dssp             TEEEEEEEETTTT---EEEE-EEEESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred             CcceEEEEECCCC---ceEE-EEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence            44  666666543   3222 222334 89999999998 6666543                           257999


Q ss_pred             EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-------eEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121          134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-------TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      ||+.+++.+..+.. . .+..+.|+|+ + +++++..++       ...+|.+.+++ ...+..+ ..+..+  +| +++
T Consensus       157 ~d~~~~~~~~~l~~-~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--sp-dg~  227 (347)
T 2gop_A          157 FDTESEEVIEEFEK-P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DS-DGE  227 (347)
T ss_dssp             EETTTTEEEEEEEE-E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EE-CSS
T ss_pred             EECCCCeEEeeecC-C-CcccccCCCC-e-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CC-CCC
Confidence            99998876455554 4 7889999999 5 777775542       33444443433 3344334 444444  88 888


Q ss_pred             EEEEEecC--------CcEEEEEccCCCccEEEEecCCCceeE-EEecCCCCeeEEeeecCCeEEEEecccccceeeeee
Q 021121          207 LIASASVD--------KSIKIWDVRNYRVPIAVLNGHGYAVRK-VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD  277 (317)
Q Consensus       207 ~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  277 (317)
                      .|+.++.+        ..|.+||  +++ .......+...+.. +.|+ ++  ++++++.++.++|| +.+++ . ..+.
T Consensus       228 ~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~-~-~~~~  298 (347)
T 2gop_A          228 RILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE-I-KPIA  298 (347)
T ss_dssp             CEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS-E-EEEE
T ss_pred             EEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc-e-EEEe
Confidence            87776644        3688888  333 23333455677886 8999 76  78889999999999 88443 3 3344


Q ss_pred             cccceeEeEEEEeccCCeEEEeecCCcE-EEEecC
Q 021121          278 HHTEFAVGVDMSVLVEGLLASTGWDELV-YVWQQG  311 (317)
Q Consensus       278 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i-~~w~~~  311 (317)
                      .+...|.+++|+|   .++++++.++.. .+|.++
T Consensus       299 ~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          299 KGRHWIMGFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             cCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence            4577899999987   577777766654 777664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=2.9e-18  Score=152.95  Aligned_cols=243  Identities=10%  Similarity=-0.008  Sum_probs=169.5

Q ss_pred             cCCCCeeEEEecCCCCCeEEEE--EcCCeEEEEEeCCCCCCCCceeeccCCcceE---------EEEEe--cCCCC-EEE
Q 021121           58 DTADGVYDLAWSESHDSLLIAA--VADGSVKIYDTALPPTANPIRSLHEHTREVH---------SADYN--PTRRD-SFI  123 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~l~  123 (317)
                      .|...+..++|+++. .+++..  +.++...||....+   .....+..+...+.         ...|+  ||++. +++
T Consensus        21 ~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           21 SRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRAD---GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTT---SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             hcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCC---CCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            577889999999874 345555  44788999997433   33444555555555         56666  99984 344


Q ss_pred             EEcCCCEEEEEEcC--CCceeEEeec-----cccceEEEEEecCCCCeEEEEeCC----------CeEEEEeCCC-----
Q 021121          124 TSSWDDTVKLWTVD--RPTSVRTFKE-----HAYCVYNATWNPRHSDVFCSASGD----------CTLRIWDVRE-----  181 (317)
Q Consensus       124 ~~~~dg~v~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~-----  181 (317)
                      +...+..|.++++.  .......+..     +...+..++|+|+ ++.|+.++.+          ..|++||+.+     
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            44446778888776  2033445554     5677899999999 7888777766          5899999987     


Q ss_pred             -CCceeeec-cCccceEEEEecCCCCcEEEEEecC--------CcEEEEEcc-CCC--ccEEEEecCCCceeEEEecCCC
Q 021121          182 -MGSTMIIP-AHEFEILACDWNKYDDCLIASASVD--------KSIKIWDVR-NYR--VPIAVLNGHGYAVRKVKFSPHR  248 (317)
Q Consensus       182 -~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d--------~~i~v~d~~-~~~--~~~~~~~~~~~~v~~~~~~~~~  248 (317)
                       ++. ..+. .+...+..++|+| +++.|+.++.+        ..|++||+. ++.  ........+...+..+.|+|+|
T Consensus       176 ~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          176 RSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             GGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             CCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence             443 4444 4556788899999 99999887755        379999998 441  2233444556789999999999


Q ss_pred             CeeEEeeecCC--eEEEEecccccceeeeeecccce--------eEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          249 RNLLASCSYDM--TVCLWDFMVEDALVGRYDHHTEF--------AVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       249 ~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      + ++++++.++  .|.+||+.+++ .......+...        +..++|+|+ +.++++++. +.+++|.++
T Consensus       254 ~-l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          254 S-LIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLAN-GLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             C-EEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTT-SCEEEEEBS-SSCEEEEEE
T ss_pred             e-EEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCC-CEEEEEEEc-CccEEEEEE
Confidence            9 788888888  56666665554 22222222222        567888887 788889888 999999554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.82  E-value=7.4e-17  Score=129.52  Aligned_cols=229  Identities=8%  Similarity=-0.071  Sum_probs=163.7

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .......+++|+|+++.+++++..++.|..|+...+     ...+..+...+.++++++++. ++++...++.|.+||..
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECST
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCC
Confidence            345567899999998548888888999999997642     445556677899999999998 77777777999999998


Q ss_pred             CCceeEEeecc----ccceEEEEEecCCCCeEEEE----e-------------CCCeEEEEeCCCCCceeeeccCccceE
Q 021121          138 RPTSVRTFKEH----AYCVYNATWNPRHSDVFCSA----S-------------GDCTLRIWDVREMGSTMIIPAHEFEIL  196 (317)
Q Consensus       138 ~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~v~  196 (317)
                      +++........    ...+..++++|+ ++++++.    +             ..+.|..++.. ++ ...+..+.....
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            87754433221    124678999998 7887763    2             13466667655 33 344444556678


Q ss_pred             EEEecCCCCcEEEEEecCCcEEEEEccCCCcc---EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee
Q 021121          197 ACDWNKYDDCLIASASVDKSIKIWDVRNYRVP---IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV  273 (317)
Q Consensus       197 ~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  273 (317)
                      .++|+| +++.+++.+.++.|.+||+......   ...+..+...+..++++++|. ++++.  ++.|.+||.. ++ .+
T Consensus       176 gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~-~~  249 (296)
T 3e5z_A          176 GLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-GD-EL  249 (296)
T ss_dssp             EEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-SC-EE
T ss_pred             cEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-CC-EE
Confidence            999999 8888877777899999998732221   122233455678899999997 45544  7889999986 43 45


Q ss_pred             eeeecccceeEeEEEE-eccCCeEEEeecCC
Q 021121          274 GRYDHHTEFAVGVDMS-VLVEGLLASTGWDE  303 (317)
Q Consensus       274 ~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg  303 (317)
                      ..+..+.. +.+++|. |+ ++.|+.++.++
T Consensus       250 ~~~~~~~~-~~~~~f~~~d-~~~L~v~t~~~  278 (296)
T 3e5z_A          250 GRVLTPQT-TSNLCFGGPE-GRTLYMTVSTE  278 (296)
T ss_dssp             EEEECSSC-CCEEEEESTT-SCEEEEEETTE
T ss_pred             EEEECCCC-ceeEEEECCC-CCEEEEEcCCe
Confidence            56666666 8999995 66 66777777664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.82  E-value=1.4e-17  Score=131.91  Aligned_cols=241  Identities=5%  Similarity=-0.051  Sum_probs=168.5

Q ss_pred             CeeEEEecCCCCCeEE-EEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           62 GVYDLAWSESHDSLLI-AAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      ...++++++++ .+++ +...++.|.+|+....   ........+...+.++++.+++. ++++.. ++.|.+||.....
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGST---GTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCc---ccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCce
Confidence            67889999998 4666 4467789999986543   11111122335678899999987 666666 8899999987654


Q ss_pred             eeEEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          141 SVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       141 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      . ..+. .....+..+++.++ ++++++...++.|.+|+..+.............+..+++++ +++++++...++.|.+
T Consensus        99 ~-~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B           99 Q-TVLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             C-EECCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEE
T ss_pred             E-eeeecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEE
Confidence            3 3332 22356899999998 77887777788999998665443332222334578899999 8888877777889999


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      ||...... ......+...+..+++++++. ++++...++.|.+|+....... .....+...+.+++++++ +.++++.
T Consensus       176 ~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~-g~l~v~~  251 (270)
T 1rwi_B          176 LEAESNNQ-VVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSD-RTVYVAD  251 (270)
T ss_dssp             ECTTTCCE-EECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTT-CCEEEEE
T ss_pred             EecCCCce-EeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcce-eeccCCCCCceeEEECCC-CCEEEEE
Confidence            99876542 222222335688999999985 6777667889999998765422 222223356889999998 6788888


Q ss_pred             ecCCcEEEEecCCCCC
Q 021121          300 GWDELVYVWQQGMDPR  315 (317)
Q Consensus       300 ~~dg~i~~w~~~~~~~  315 (317)
                      ..++.|+++++..+++
T Consensus       252 ~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          252 RGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             GGGTEEEEECCCGGGS
T ss_pred             CCCCEEEEEcCCCccc
Confidence            8999999999987653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=5e-17  Score=134.08  Aligned_cols=263  Identities=12%  Similarity=0.002  Sum_probs=169.9

Q ss_pred             EEEEecCCCCeEEEEEeccccc----ccCceEEEEecCCCCCcceeeeeec----CCCCeeEEEecCCCCCeEEEEEc--
Q 021121           12 SVKFSPFYESRLAVATAQNFGI----LGNGRVHVLDLSPAAPALTELVAFD----TADGVYDLAWSESHDSLLIAAVA--   81 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~----~~~g~i~i~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~--   81 (317)
                      .++|+|  +++++.........    ..++.|.+||...... ...+....    +......++++|++ ++|+++..  
T Consensus        54 ~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-EKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASP  129 (361)
T ss_dssp             EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-EEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESS
T ss_pred             ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcE-EEEEEcCccccccCCCcceEEECCCC-CEEEEECCCC
Confidence            799999  55555554321000    0156799999875441 22222111    23457789999998 47776653  


Q ss_pred             CCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-CceeEEe------eccccceE
Q 021121           82 DGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRTF------KEHAYCVY  153 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~------~~~~~~v~  153 (317)
                      ++.|.+||+...   +.+.. +..  .....+.+.|++...+++.+.||.+.+|+++. ++.....      .....+ .
T Consensus       130 ~~~v~v~d~~~~---~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~  203 (361)
T 2oiz_A          130 ATSIGIVDVAKG---DYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-I  203 (361)
T ss_dssp             SEEEEEEETTTT---EEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-B
T ss_pred             CCeEEEEECCCC---cEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-e
Confidence            589999999865   44444 332  12233567888766888899999999999865 4443111      111121 2


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCce--eeeccC----------ccceEEEEecCCCCcEEEEEec--------
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGST--MIIPAH----------EFEILACDWNKYDDCLIASASV--------  213 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~----------~~~v~~i~~~~~~~~~l~~~~~--------  213 (317)
                      .+.+.++ +..++..+.++.+.++|+......  ..+...          ......++++| +++.++++..        
T Consensus       204 ~~~~~~~-g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~  281 (361)
T 2oiz_A          204 FIAPALD-KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTH  281 (361)
T ss_dssp             CSCCEEC-SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCT
T ss_pred             EEEeccc-CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccc
Confidence            3334566 556666778899999998755422  111100          01122378899 6666555432        


Q ss_pred             ---CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc--cceeeeeecccceeEeEEE
Q 021121          214 ---DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE--DALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       214 ---d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~  288 (317)
                         .+.|.+||+.+.+ .+..+..+.  +.+++|+|+++ +|++++. +.|.+||..++  + ++..+..+......+++
T Consensus       282 ~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~l~-~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          282 KFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPEPK-LLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             TCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSSSCE-EEEEETTSCSSEEEEEE
T ss_pred             cCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCcce-eeEEeccCCCCcEEEEe
Confidence               3479999999876 477777666  89999999999 5776666 99999999998  6 55665566677788999


Q ss_pred             Eecc
Q 021121          289 SVLV  292 (317)
Q Consensus       289 ~~~~  292 (317)
                      +|++
T Consensus       356 ~p~G  359 (361)
T 2oiz_A          356 HPVG  359 (361)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            9983

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=2e-17  Score=135.05  Aligned_cols=237  Identities=8%  Similarity=0.064  Sum_probs=168.3

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      ..|.++.|++++ ..++..+.++.++.|.   .   .....+..+...+.+++|++++. +++++..++.|.+||.++++
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKS-NSAVPIISESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGG-GCSSCCCCGGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCc-cceeEEeecccCcccc---c---ceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCc
Confidence            347788899886 4555556778888883   1   34455566667789999999987 77788889999999998887


Q ss_pred             eeEEeeccccceEEEEEecCCCCeEEEEeCC----CeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEec-
Q 021121          141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGD----CTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASV-  213 (317)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-  213 (317)
                      .......+...+.+++++|+ ++++++...+    +.|.+||.++++....+.  .....+..++++| +++++++... 
T Consensus        78 ~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~  155 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRG  155 (333)
T ss_dssp             EEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCC
T ss_pred             EEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccc
Confidence            65544345677999999998 7777776666    689999998776543332  2345688999999 8887776653 


Q ss_pred             -----CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceee--------eeeccc
Q 021121          214 -----DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVG--------RYDHHT  280 (317)
Q Consensus       214 -----d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--------~~~~~~  280 (317)
                           .+.|..+|..+.+  ...+......+..++|+|+++.++++.+.++.|.+||+.+......        .+.++ 
T Consensus       156 ~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-  232 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-  232 (333)
T ss_dssp             BTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred             cccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence                 3556666665433  2333233345789999999985556666688999999864221111        11122 


Q ss_pred             ceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          281 EFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       281 ~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ..+..++++++ +.++++...++.|.+|+.+
T Consensus       233 ~~~~~i~~d~~-G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          233 EGPDSCCIDSD-DNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             SEEEEEEEBTT-CCEEEEEETTTEEEEECTT
T ss_pred             CCCCceEECCC-CCEEEEEcCCCEEEEECCC
Confidence            36788999998 6777777778899999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.80  E-value=1.4e-16  Score=129.78  Aligned_cols=261  Identities=9%  Similarity=0.022  Sum_probs=179.6

Q ss_pred             CceEEEEecCCCCCcceee---eeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121           36 NGRVHVLDLSPAAPALTEL---VAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSA  112 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~  112 (317)
                      ++.|.++|.++........   ...........+.+..  ..+.++...++.|.+||..+.   +.+..+. .......+
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~---~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTF---KEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTC---CEEEEEE-CCSSEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECccc---EEEEEcC-CCCCCcEE
Confidence            7899999998764211000   0001223456777753  356666667899999999866   5555553 34678899


Q ss_pred             EEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc-----cceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCCcee
Q 021121          113 DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMGSTM  186 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  186 (317)
                      ++++++. ++++...++.|.+||+.+++....+....     ..+..+++  +++.++++.. .++.|.++|+++++...
T Consensus        90 ~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~  166 (328)
T 3dsm_A           90 HFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD  166 (328)
T ss_dssp             EEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred             EEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence            9988874 55555578999999999998877766433     14567777  3255555544 48899999999988777


Q ss_pred             eeccCccceEEEEecCCCCcEEEEEecC----------CcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEee
Q 021121          187 IIPAHEFEILACDWNKYDDCLIASASVD----------KSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       187 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      .+... .....++++| ++++++++..+          +.|.++|..+.+. ...+.. .......++++|+++. |+.+
T Consensus       167 ~i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~-lyv~  242 (328)
T 3dsm_A          167 ELTIG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDT-LYWI  242 (328)
T ss_dssp             EEECS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCE-EEEE
T ss_pred             EEEcC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCE-EEEE
Confidence            76643 3457889999 88887777654          7899999987653 334432 2346789999999985 5554


Q ss_pred             ecCCeEEEEecccccceeee-eecccceeEeEEEEeccCCeEEEe----ecCCcEEEEecC
Q 021121          256 SYDMTVCLWDFMVEDALVGR-YDHHTEFAVGVDMSVLVEGLLAST----GWDELVYVWQQG  311 (317)
Q Consensus       256 ~~d~~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~~w~~~  311 (317)
                      ..  .|.+||..+++..... .........+++++|+++.++++.    ..++.|.+|+..
T Consensus       243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            33  8999999877632111 222245688999999756777776    678999999987

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.80  E-value=1.8e-15  Score=121.39  Aligned_cols=278  Identities=8%  Similarity=-0.030  Sum_probs=185.9

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ...+.++.+.+  ++.+.++...      ++.|.+|+.. ..  ............+..+++.+++ .+.++...++.|.
T Consensus        19 ~~~p~~i~~d~--~g~l~v~~~~------~~~v~~~~~~-~~--~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~   86 (300)
T 2qc5_A           19 DSGPYGITSSE--DGKVWFTQHK------ANKISSLDQS-GR--IKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIG   86 (300)
T ss_dssp             TCCEEEEEECT--TSCEEEEETT------TTEEEEECTT-SC--EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             CCCcceeeECC--CCCEEEEcCC------CCeEEEECCC-Cc--eEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEE
Confidence            34778999999  5777777654      7899999977 33  2222211234678999999987 4666655578899


Q ss_pred             EEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE-eeccccceEEEEEecCCCCeE
Q 021121           87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      .+|.. + .. ...........+.++++.+++. ++++...++.|..+|.. ++.... +......+..+++.++ +++.
T Consensus        87 ~~d~~-g-~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~-g~l~  160 (300)
T 2qc5_A           87 KLSKK-G-GF-TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD-NALW  160 (300)
T ss_dssp             EECTT-S-CE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-SSEE
T ss_pred             EECCC-C-Ce-EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-CCEE
Confidence            99866 3 11 1112222346788999999887 77777768899999987 554422 2223456899999998 6777


Q ss_pred             EEEeCCCeEEEEeCCCCCceee-eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          166 CSASGDCTLRIWDVREMGSTMI-IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      ++...++.|..+|. +++.... .......+..+++++ +++++++....+.|.+||. +++........+...+.++++
T Consensus       161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  237 (300)
T 2qc5_A          161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA  237 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence            66666889999998 4443332 223345678999998 8888777766778999998 333222223334566889999


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      ++++. +.++...++.|..||. +++............+.+++++++ +.++++.. . .|..++.
T Consensus       238 d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          238 GKNSE-IWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKD-GSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CSTTC-EEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTT-SCEEEECS-S-EEEEEEE
T ss_pred             CCCCC-EEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCC-CCEEEEcc-C-ceEEeCC
Confidence            99987 5666556789999998 343221222323456888999987 66555554 4 6666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=1.2e-16  Score=126.48  Aligned_cols=240  Identities=8%  Similarity=0.001  Sum_probs=166.2

Q ss_pred             ceeEEEEecCCCCeEEE-EEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            9 NGYSVKFSPFYESRLAV-ATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~-~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      .+.+++++|  ++.+.+ +...      ++.|.+|+......  . .........+.++++.+++. ++++.. ++.|.+
T Consensus        25 ~p~~i~~~~--~g~l~v~~~~~------~~~i~~~~~~~~~~--~-~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~   91 (270)
T 1rwi_B           25 SPSGVAVDS--AGNVYVTSEGM------YGRVVKLATGSTGT--T-VLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVT   91 (270)
T ss_dssp             CEEEEEECT--TCCEEEEECSS------SCEEEEECC-------E-ECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEE
T ss_pred             CccceEECC--CCCEEEEccCC------CCcEEEecCCCccc--c-eEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEE
Confidence            678899999  566666 5343      78999998754431  1 11122335678899999874 555544 889999


Q ss_pred             EEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121           88 YDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      |+....    ....+. .....+..+++.+++. ++++...++.|.+|+..+.............+.+++++++ +++++
T Consensus        92 ~d~~~~----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v  165 (270)
T 1rwi_B           92 LAAGSN----NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYV  165 (270)
T ss_dssp             ECTTCS----CCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT-CCEEE
T ss_pred             EeCCCc----eEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC-CCEEE
Confidence            997643    222222 2235788999999987 7777777899999986654433222223346789999998 67777


Q ss_pred             EEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121          167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP  246 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~  246 (317)
                      +...++.|.+||................+..+++++ ++.++++...++.|.+||...... ......+...+.+++++|
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~  243 (270)
T 1rwi_B          166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDS  243 (270)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECT
T ss_pred             EECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECC
Confidence            777788999999876654433333335678999999 888888877788999999876432 222222335688999999


Q ss_pred             CCCeeEEeeecCCeEEEEeccccc
Q 021121          247 HRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ++. ++++...++.|++++....+
T Consensus       244 ~g~-l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          244 DRT-VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCC-EEEEEGGGTEEEEECCCGGG
T ss_pred             CCC-EEEEECCCCEEEEEcCCCcc
Confidence            997 78888889999999987655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=3.4e-15  Score=129.38  Aligned_cols=295  Identities=13%  Similarity=0.058  Sum_probs=192.8

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEec----CCCCCeEEEE
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS----ESHDSLLIAA   79 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~   79 (317)
                      +.....+..+.|+|  +++++..++.      ++.|.+||+....  .+.+...........++|+    |+|..++++.
T Consensus       193 i~~g~~p~~v~~Sp--DGr~lyv~~~------dg~V~viD~~~~t--~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          193 LDTGYAVHISRLSA--SGRYLFVIGR------DGKVNMIDLWMKE--PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             EECSSCEEEEEECT--TSCEEEEEET------TSEEEEEETTSSS--CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             EeCCCCccceEECC--CCCEEEEEcC------CCeEEEEECCCCC--CcEeEEEecCCCCceeEEccccCCCCCEEEEEE
Confidence            44555678999999  5666666664      8899999995211  1223334445567899999    6986555555


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeecc----------CCc-ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-c
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHE----------HTR-EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-E  147 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~  147 (317)
                      ..++.|.++|..+.   +.+..+..          |.. .+..+..++++...++....+|.|.++|..+.+...... .
T Consensus       263 ~~~~~v~ViD~~t~---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          263 YWPPQYVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             EETTEEEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred             ccCCeEEEEECCCC---cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee
Confidence            66799999997655   44443321          222 678888898887677777788999999998764332211 2


Q ss_pred             cccceEEEEEecCCCCeE-EEEeCCCeEEEEeCCCCCceeeecc-Cccc--eEEEE-ecCCCCcEEEEEe-cCCcEEEEE
Q 021121          148 HAYCVYNATWNPRHSDVF-CSASGDCTLRIWDVREMGSTMIIPA-HEFE--ILACD-WNKYDDCLIASAS-VDKSIKIWD  221 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~--v~~i~-~~~~~~~~l~~~~-~d~~i~v~d  221 (317)
                      .......+.|+|+ ++++ ++...++.|.++|+.+++....+.. ...+  -.... ++|..+..++++. .++.|.++|
T Consensus       340 ~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          340 AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             ccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEec
Confidence            3345778899999 5555 4555688999999999877665543 1111  11222 5772355555554 468999999


Q ss_pred             ccCCC------ccEEEEecCCCceeEEEecCCCCeeEEeeec-------CCeEEEEecccc-----cceeeeee------
Q 021121          222 VRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSY-------DMTVCLWDFMVE-----DALVGRYD------  277 (317)
Q Consensus       222 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------d~~i~vwd~~~~-----~~~~~~~~------  277 (317)
                      ....+      ..+..+......-..+..+|++++ +.+...       .++|.++|+.+.     ......+.      
T Consensus       419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~  497 (567)
T 1qks_A          419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY-LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG  497 (567)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE-EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred             CCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe-EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc
Confidence            88621      235666654434345889999996 444332       358999999877     32222221      


Q ss_pred             --cccceeEeEEEEeccCCeEEEee----cCCcEEEEecCCC
Q 021121          278 --HHTEFAVGVDMSVLVEGLLASTG----WDELVYVWQQGMD  313 (317)
Q Consensus       278 --~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~~w~~~~~  313 (317)
                        .....+..+.|+|++..++++..    .++.|.++|..+.
T Consensus       498 ~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          498 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence              12457899999999555555532    3799999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=2.3e-16  Score=141.78  Aligned_cols=242  Identities=9%  Similarity=0.020  Sum_probs=162.6

Q ss_pred             CeeEEEecCCCCCeEEEEEcC-C----eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCE------
Q 021121           62 GVYDLAWSESHDSLLIAAVAD-G----SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT------  130 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~d-g----~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------  130 (317)
                      .+..++|||||. +|+.+..+ |    .|++||+.++   +...... ....+..++|+||++ .|+.++.++.      
T Consensus       126 ~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~~-~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          126 ALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGA---KELPDVL-ERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             EEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTT---EEEEEEE-EEECSCCEEECTTSS-EEEEEECCCCSSCCSS
T ss_pred             EEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCC---CCCcccc-cCcccceEEEEeCCC-EEEEEEECCccccccc
Confidence            588999999995 66655443 3    8999999876   3332211 122367799999998 7777766655      


Q ss_pred             ----------EEEEEcCCCcee--EEeec--cccceEEEEEecCCCCeEEEEeC-----CCeEEEEeCCC------CC-c
Q 021121          131 ----------VKLWTVDRPTSV--RTFKE--HAYCVYNATWNPRHSDVFCSASG-----DCTLRIWDVRE------MG-S  184 (317)
Q Consensus       131 ----------v~iwd~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~  184 (317)
                                |++|++.+++..  ..+..  +...+..+.|+|+ ++.|+..+.     +..|++||+.+      +. .
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                      999999887632  22232  3455789999999 666666553     56899999986      43 3


Q ss_pred             eeeeccCccceEEEEecCCCCcEEEEEecC----CcEEEEEccCCCc-cEEEEecCCC--ceeEEEecCCCCeeEEeeec
Q 021121          185 TMIIPAHEFEILACDWNKYDDCLIASASVD----KSIKIWDVRNYRV-PIAVLNGHGY--AVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       185 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~  257 (317)
                      ...+..+...+.. .|+| ++..|+..+..    +.|.+||+.+... ....+..|..  .+..++|++++. ++++...
T Consensus       279 ~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~  355 (710)
T 2xdw_A          279 WVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLH  355 (710)
T ss_dssp             CEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEE
T ss_pred             eEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEE
Confidence            5555555555544 4777 66666655543    3699999987642 1344444543  688899986655 7888888


Q ss_pred             CCe--EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee---cCCcEEEEecCCCC
Q 021121          258 DMT--VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG---WDELVYVWQQGMDP  314 (317)
Q Consensus       258 d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~  314 (317)
                      ++.  |.+|++.+++ ....+..+.+.+..++++|++..++++.+   ..+.|+.||+.++.
T Consensus       356 ~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          356 DVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            886  4556665554 34556666778889999998434444433   35789999987654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=1.8e-15  Score=131.14  Aligned_cols=281  Identities=12%  Similarity=0.078  Sum_probs=190.8

Q ss_pred             EecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC
Q 021121           15 FSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPP   94 (317)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~   94 (317)
                      |..+..+.++++...      ++.|.++|..+..    .+..+.....+..+.|+|++ +++++++.++.|.+||+... 
T Consensus       161 ~~~d~~~~~~V~~~~------~~~V~viD~~t~~----v~~~i~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~-  228 (567)
T 1qks_A          161 NDWDLENLFSVTLRD------AGQIALIDGSTYE----IKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMK-  228 (567)
T ss_dssp             SCCCGGGEEEEEETT------TTEEEEEETTTCC----EEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSS-
T ss_pred             cccCCCceEEEEeCC------CCeEEEEECCCCe----EEEEEeCCCCccceEECCCC-CEEEEEcCCCeEEEEECCCC-
Confidence            444335667776664      8999999998765    23334455567899999998 58888889999999998511 


Q ss_pred             CCCCceeeccCCcceEEEEEe----cCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-----------ccceEEEEEec
Q 021121           95 TANPIRSLHEHTREVHSADYN----PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-----------AYCVYNATWNP  159 (317)
Q Consensus        95 ~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~  159 (317)
                      ..+.+..+.. ......++|+    |+|+..+++...++.|.++|..+.+.+..+...           ...+..+..++
T Consensus       229 t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~  307 (567)
T 1qks_A          229 EPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  307 (567)
T ss_dssp             SCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             CCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence            1244455543 3345789999    699844555556799999999999888776522           12578888998


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEec---
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNG---  234 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~---  234 (317)
                      ++...++....+|.|.++|....+.+.... ........+.|+| ++++++++. .++.|.++|+.+.+. ...+..   
T Consensus       308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl-~~~i~vgg~  385 (567)
T 1qks_A          308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQ  385 (567)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSS
T ss_pred             CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcE-EEEEeccCc
Confidence            866667777778999999987654322211 2334567889999 888766554 678899999998763 444332   


Q ss_pred             --CCCceeEEE-ecCCCCeeEEeee-cCCeEEEEeccccc------ceeeeeecccceeEeEEEEeccCCeEEEeec---
Q 021121          235 --HGYAVRKVK-FSPHRRNLLASCS-YDMTVCLWDFMVED------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGW---  301 (317)
Q Consensus       235 --~~~~v~~~~-~~~~~~~~l~~~~-~d~~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---  301 (317)
                        |.+  .... ++|++..+.+++. .++.|.++|..+.+      ..++.+......-..+..+|+ +..|.....   
T Consensus       386 ~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~-~~~l~v~~~~~~  462 (567)
T 1qks_A          386 TPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN-SQYLYVDATLNP  462 (567)
T ss_dssp             SBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT-CSEEEEECTTCS
T ss_pred             CCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC-CCeEEEecCCCC
Confidence              322  2223 5787554555553 46899999988722      245555544333355778998 566665442   


Q ss_pred             ----CCcEEEEecCCC
Q 021121          302 ----DELVYVWQQGMD  313 (317)
Q Consensus       302 ----dg~i~~w~~~~~  313 (317)
                          .+.|.++|+.+.
T Consensus       463 ~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          463 EAEISGSVAVFDIKAM  478 (567)
T ss_dssp             SHHHHTCEEEEEGGGC
T ss_pred             CcccCceEEEEECCcc
Confidence                468999998754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=3.8e-16  Score=140.30  Aligned_cols=245  Identities=9%  Similarity=0.027  Sum_probs=162.9

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCc----eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNG----RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .+..++|||  +++.++.....     .|    .|++||+..+..  ..... .. ..+..++|+||+ ..|+.++.++.
T Consensus       126 ~~~~~~~SP--Dg~~la~~~~~-----~G~~~~~i~v~d~~tg~~--~~~~~-~~-~~~~~~~wspDg-~~l~~~~~~~~  193 (710)
T 2xdw_A          126 ALRGYAFSE--DGEYFAYGLSA-----SGSDWVTIKFMKVDGAKE--LPDVL-ER-VKFSCMAWTHDG-KGMFYNAYPQQ  193 (710)
T ss_dssp             EEEEEEECT--TSSEEEEEEEE-----TTCSCEEEEEEETTTTEE--EEEEE-EE-ECSCCEEECTTS-SEEEEEECCCC
T ss_pred             EEEEEEECC--CCCEEEEEEcC-----CCCceEEEEEEECCCCCC--Ccccc-cC-cccceEEEEeCC-CEEEEEEECCc
Confidence            577899999  45544443321     33    899999987652  22111 11 226789999998 47777776655


Q ss_pred             ----------------EEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcC-----CCEEEEEEcCC----
Q 021121           85 ----------------VKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSW-----DDTVKLWTVDR----  138 (317)
Q Consensus        85 ----------------i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~----  138 (317)
                                      |.+|++.++... ..+.....|...+..+.|+|+|+ +|+.++.     +..|++||+.+    
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccc
Confidence                            999998765211 11112223456688999999998 6665543     57899999986    


Q ss_pred             --Cc-eeEEeeccccceEEEEEecCCCCeEEEEeC-C---CeEEEEeCCCCCc--eeeeccCcc--ceEEEEecCCCCcE
Q 021121          139 --PT-SVRTFKEHAYCVYNATWNPRHSDVFCSASG-D---CTLRIWDVREMGS--TMIIPAHEF--EILACDWNKYDDCL  207 (317)
Q Consensus       139 --~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~--~~~~~~~~~--~v~~i~~~~~~~~~  207 (317)
                        +. ....+..+...+.. .|+|+ +..|+..+. +   +.|.+||+.+++.  ...+..+..  .+..++|++ ++.+
T Consensus       273 ~~~~~~~~~l~~~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l  349 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFL  349 (710)
T ss_dssp             SCSSCCCEEEECSSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEE
T ss_pred             cCCccceEEeeCCCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEE
Confidence              43 35566656555554 47888 555444443 3   3699999987642  344444433  678899987 7888


Q ss_pred             EEEEecCCc--EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee---cCCeEEEEeccccc
Q 021121          208 IASASVDKS--IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS---YDMTVCLWDFMVED  270 (317)
Q Consensus       208 l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~vwd~~~~~  270 (317)
                      +++...++.  |.+||+.+++ ....+..+...+..+.++|+++.++++.+   ..+.|..||+.+++
T Consensus       350 v~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888888885  5666765554 35666667778899999999876555544   34789999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=8.2e-18  Score=140.58  Aligned_cols=235  Identities=13%  Similarity=0.114  Sum_probs=151.4

Q ss_pred             eeEEEecCCCCCeEEEEEc-CC--eEEEEEeCCCCCCCCceeeccCCcc-eEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           63 VYDLAWSESHDSLLIAAVA-DG--SVKIYDTALPPTANPIRSLHEHTRE-VHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~-dg--~i~v~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      +..++|+|+|. .|+.... ++  .|.+|++..+   +.. .+..+... ...+.|+|+++ .|+.++.++.|++||+.+
T Consensus        38 ~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~---~~~-~l~~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQ---QAV-QLTEGKGDNTFGGFISTDER-AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTT---EEE-ECCCSSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCC-EEEEEEecCCCceEEEEECCCC---cEE-EeecCCCCccccceECCCCC-EEEEEEcCCcEEEEECCC
Confidence            67889999995 5555543 33  6777787654   222 22223333 33378999998 888888888999999998


Q ss_pred             CceeEEeeccccceEE-------------------EEEecCCCCeEEEE-----eCCCeEEEEeCCCCCceeeeccCccc
Q 021121          139 PTSVRTFKEHAYCVYN-------------------ATWNPRHSDVFCSA-----SGDCTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      ++.......+......                   ..|+|+ ++.++..     ..+..|++||+.+++..... .+...
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~  189 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW  189 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence            8765555433332222                   345676 4444433     45678999999887655444 45667


Q ss_pred             eEEEEecCCCCcEEEEEecC------CcEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeeecC-----CeE
Q 021121          195 ILACDWNKYDDCLIASASVD------KSIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYD-----MTV  261 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d-----~~i  261 (317)
                      +..+.|+|.++..|+..+.+      ..|.+||+...+  ...+..+  ...+..++|+|+++. |+.++.+     +.|
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSA-MAYVSYFKGQTDRVI  266 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSC-EEEEEEETTTCCEEE
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCE-EEEEecCCCCccceE
Confidence            88999998446656655543      368888886543  2333333  235788999999985 5444433     459


Q ss_pred             EEEecccccceeeeeecccceeEeEEEEe-ccCCeEEEee----------------cCCcEEEEecCCC
Q 021121          262 CLWDFMVEDALVGRYDHHTEFAVGVDMSV-LVEGLLASTG----------------WDELVYVWQQGMD  313 (317)
Q Consensus       262 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~----------------~dg~i~~w~~~~~  313 (317)
                      .+||+.+++.. . +..... .. +.|+| + +++++.++                .++.|++||+...
T Consensus       267 ~~~d~~~g~~~-~-l~~~~~-~~-~~~s~~d-g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          267 YKANPETLENE-E-VMVMPP-CS-HLMSNFD-GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             EEECTTTCCEE-E-EEECCS-EE-EEEECSS-SSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             EEEECCCCCeE-E-eeeCCC-CC-CCccCCC-CceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            99999877522 1 111112 22 89999 8 66777654                3478999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=9.3e-17  Score=143.89  Aligned_cols=245  Identities=8%  Similarity=-0.055  Sum_probs=156.9

Q ss_pred             CCCCeeEEEecCCCCCeEE-EEE----cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCE---
Q 021121           59 TADGVYDLAWSESHDSLLI-AAV----ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT---  130 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~-~~~----~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---  130 (317)
                      |...+..++|||||. +|+ +.+    .+..|++||+.+++... ...+..  .....++|+|||+ .|+.++.|..   
T Consensus       119 ~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~--~~~~~~~wspDg~-~l~~~~~d~~~~~  193 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEG--GKYATPKWTPDSK-GFYYEWLPTDPSI  193 (695)
T ss_dssp             SCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSC--CTTCCCEECTTSS-EEEEEECCCCTTS
T ss_pred             CCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcC-CcccCc--ccccceEEecCCC-EEEEEEecCCCCC
Confidence            334688999999995 555 333    33579999998763210 111111  1126789999998 7777777665   


Q ss_pred             ----------EEEEEcCCCce----eEEeeccccceEEEEEecCCCCeEEEEeCCC----eEEEEeCCCCCceeeeccCc
Q 021121          131 ----------VKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGDC----TLRIWDVREMGSTMIIPAHE  192 (317)
Q Consensus       131 ----------v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~  192 (317)
                                |++|++.+++.    +.....+...+..+.|+|+ ++.++.++.++    .|+++|..+++ ...+..+.
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~  271 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD-GKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGV  271 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT-SCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECS
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC-CCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCC
Confidence                      99999988763    2222334457889999999 56666655554    67777765544 34444445


Q ss_pred             cceEEEEecCCCCcEEEEEe---cCCcEEEEEccCCCc--cEEEEecC-CCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          193 FEILACDWNKYDDCLIASAS---VDKSIKIWDVRNYRV--PIAVLNGH-GYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       193 ~~v~~i~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      ..+....+ + ++.+++...   .++.|.+||+.++..  ....+..+ ...+..++|+ ++ .++++...|+..+||.+
T Consensus       272 ~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          272 GAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             SCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEE
T ss_pred             CceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEE
Confidence            55556666 4 455544443   257899999977542  12233333 4567888888 44 48899999999888876


Q ss_pred             ccccceeeeeecc-cceeEeEEEEeccCCeEEEee---cCCcEEEEecCCCC
Q 021121          267 MVEDALVGRYDHH-TEFAVGVDMSVLVEGLLASTG---WDELVYVWQQGMDP  314 (317)
Q Consensus       267 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~  314 (317)
                      .........+..+ .+.+..++++|++..++++.+   ..+.|++||+.++.
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            5322233444444 667888999998433443333   45789999987643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.78  E-value=5.9e-16  Score=122.59  Aligned_cols=210  Identities=11%  Similarity=0.065  Sum_probs=158.6

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC-cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc-cc
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHT-REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA-YC  151 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~  151 (317)
                      ++|++++.++.|.+||.+++   +.+..+..+. ..+.++.+.|+|+ +++  +.++.|..||. +++.+..+..+. ..
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             cEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            58999999999999998666   6677776655 4788999999997 676  34788999999 799888888653 47


Q ss_pred             eEEEEEecCCCCeEEEEeC-CCeEEEEeCCCCCceeeecc------CccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          152 VYNATWNPRHSDVFCSASG-DCTLRIWDVREMGSTMIIPA------HEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      +.++.+.|+ ++++++.+. ++.+..+|. +++.+..+..      +......++..+ +++++++...++.|..||.. 
T Consensus        79 ~~~~~~~~d-G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           79 MQTARILPD-GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEEECTT-SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-
T ss_pred             ccccEECCC-CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-
Confidence            889999998 888888777 788888886 5666655531      122345667788 89999999999999999987 


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc------ceeEeEEEEeccCCeEEE
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT------EFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s  298 (317)
                      ++. +..+... ..+.++...+++. +++++..++.|..+|..+++ .+..+..+.      ..+..++..++ +.++++
T Consensus       155 G~~-~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~l~~~~~~~~~~~-G~i~v~  229 (276)
T 3no2_A          155 GQL-LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNR-IVRRVNANDIEGVQLFFVAQLFPLQN-GGLYIC  229 (276)
T ss_dssp             SCE-EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCC-EEEEEEGGGSBSCCCSEEEEEEECTT-SCEEEE
T ss_pred             CCE-EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCc-EEEEecCCCCCCccccccccceEcCC-CCEEEE
Confidence            664 5665543 3566788889988 68888888899999998877 444443321      23677777776 666666


Q ss_pred             e
Q 021121          299 T  299 (317)
Q Consensus       299 ~  299 (317)
                      .
T Consensus       230 ~  230 (276)
T 3no2_A          230 N  230 (276)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=9.8e-16  Score=122.98  Aligned_cols=233  Identities=9%  Similarity=0.003  Sum_probs=157.2

Q ss_pred             cceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            8 FNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      ....+++|+|  ++. ++++...      ++.|..|+....   .....  .+...+.+++++|++ .++++...++.|.
T Consensus        28 ~~~eg~~~d~--~g~~l~~~~~~------~~~i~~~~~~~~---~~~~~--~~~~~~~~l~~~~dg-~l~v~~~~~~~i~   93 (296)
T 3e5z_A           28 TWTEGPVYVP--ARSAVIFSDVR------QNRTWAWSDDGQ---LSPEM--HPSHHQNGHCLNKQG-HLIACSHGLRRLE   93 (296)
T ss_dssp             SSEEEEEEEG--GGTEEEEEEGG------GTEEEEEETTSC---EEEEE--SSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred             ccccCCeEeC--CCCEEEEEeCC------CCEEEEEECCCC---eEEEE--CCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence            4567899999  454 5555554      789999998764   22222  355678999999998 4666665668899


Q ss_pred             EEEeCCCCCCCCceeec---c-CCcceEEEEEecCCCCEEEE----Ec-------------CCCEEEEEEcCCCceeEEe
Q 021121           87 IYDTALPPTANPIRSLH---E-HTREVHSADYNPTRRDSFIT----SS-------------WDDTVKLWTVDRPTSVRTF  145 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~v~iwd~~~~~~~~~~  145 (317)
                      +||..++   +......   . ....+..++++|+|. ++++    |+             ..+.|..++.. ++ ...+
T Consensus        94 ~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~  167 (296)
T 3e5z_A           94 RQREPGG---EWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP  167 (296)
T ss_dssp             EECSTTC---CEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred             EEcCCCC---cEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence            9998654   2211111   1 123467899999997 7776    33             13567767665 43 3444


Q ss_pred             eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC-CCCc---eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121          146 KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGS---TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d  221 (317)
                      ..+...+..++|+|+ ++.+++.+.++.|.+||+. +++.   ...+..+...+..+++++ +++++++.  ++.|.+||
T Consensus       168 ~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             ECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEEC
T ss_pred             ecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEEC
Confidence            455667899999999 6766777888999999987 4443   223333444567899999 88877666  78899999


Q ss_pred             ccCCCccEEEEecCCCceeEEEe-cCCCCeeEEeeecCCeEEEEecccc
Q 021121          222 VRNYRVPIAVLNGHGYAVRKVKF-SPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .. ++ .+..+..+.. +++++| .|+++. |++++.++ +.-++..+.
T Consensus       244 ~~-g~-~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          244 PD-GD-ELGRVLTPQT-TSNLCFGGPEGRT-LYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             TT-SC-EEEEEECSSC-CCEEEEESTTSCE-EEEEETTE-EEEEECSCC
T ss_pred             CC-CC-EEEEEECCCC-ceeEEEECCCCCE-EEEEcCCe-EEEEEcccc
Confidence            86 34 3566666666 899999 588884 66666553 444455444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.76  E-value=5.8e-15  Score=118.40  Aligned_cols=237  Identities=8%  Similarity=-0.012  Sum_probs=165.5

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ...+.++++.+++ .++++...++.|.+||.. +   .... ....+...+.++++.+++. ++++...++.|..||.. 
T Consensus        14 ~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           14 DTGPYGITVSDKG-KVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-   86 (299)
T ss_dssp             SCCEEEEEECTTS-CEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred             CCCccceEECCCC-CEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-
Confidence            3568999999998 466555557889999976 3   2111 1223456789999999987 77777778999999986 


Q ss_pred             CceeEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee-eccCccceEEEEecCCCCcEEEEEecCC
Q 021121          139 PTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI-IPAHEFEILACDWNKYDDCLIASASVDK  215 (317)
Q Consensus       139 ~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~  215 (317)
                      ++. ..+.  .....+..+++.++ +.++++...++.|..||. +++.... .......+..+++++ +++++++...++
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~  162 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNN  162 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTT
T ss_pred             CcE-EEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCC
Confidence            332 2332  23457899999997 778877777889999998 4443322 222345688999998 888888777778


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCe
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL  295 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  295 (317)
                      .|..||. +++............+..+++++++. ++++...++.|.+||. +++........+...+.+++++++ +.+
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l  238 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG-IDL  238 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST-TCE
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC-CCE
Confidence            9999998 54422212333445688999999987 6666656789999998 554222122334467889999998 666


Q ss_pred             EEEeecCCcEEEEecC
Q 021121          296 LASTGWDELVYVWQQG  311 (317)
Q Consensus       296 l~s~~~dg~i~~w~~~  311 (317)
                      +++...++.|..|+..
T Consensus       239 ~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          239 WFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEETTTTEEEEEETT
T ss_pred             EEeccCCceEEEECCC
Confidence            6666567889999873

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=5e-15  Score=120.57  Aligned_cols=253  Identities=8%  Similarity=-0.010  Sum_probs=169.2

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      .+..+.+..   +++.++...      ++.|.+||..+.+    .+..+........+++++++ .+.++...++.|.+|
T Consensus        45 ~~~~i~~~~---~~lyv~~~~------~~~v~viD~~t~~----~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~i  110 (328)
T 3dsm_A           45 VAQSMVIRD---GIGWIVVNN------SHVIFAIDINTFK----EVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFII  110 (328)
T ss_dssp             CEEEEEEET---TEEEEEEGG------GTEEEEEETTTCC----EEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEE
T ss_pred             cceEEEEEC---CEEEEEEcC------CCEEEEEECcccE----EEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEE
Confidence            356677754   555555554      7899999998765    22223445678999999887 455544478999999


Q ss_pred             EeCCCCCCCCceeeccCC-----cceEEEEEecCCCCEEEEEc-CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           89 DTALPPTANPIRSLHEHT-----REVHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      |..+.   +....+....     .....+++ .++. ++++.. .++.|.++|+++++....+... .....++++|+ +
T Consensus       111 D~~t~---~~~~~i~~g~~~~~~~~p~~i~~-~~~~-lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~d-G  183 (328)
T 3dsm_A          111 NPKTY---EITGYIECPDMDMESGSTEQMVQ-YGKY-VYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKY-N  183 (328)
T ss_dssp             ETTTT---EEEEEEECTTCCTTTCBCCCEEE-ETTE-EEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTT-S
T ss_pred             ECCCC---eEEEEEEcCCccccCCCcceEEE-ECCE-EEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCC-C
Confidence            98765   3333333211     14456677 3333 444443 4899999999999888777643 34678999998 6


Q ss_pred             CeEEEEeCC----------CeEEEEeCCCCCceeeeccC-ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121          163 DVFCSASGD----------CTLRIWDVREMGSTMIIPAH-EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       163 ~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      ++++++..+          +.|.++|..+++....+... ......++++| +++.+.++..  .|.+||..+.+.....
T Consensus       184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~  260 (328)
T 3dsm_A          184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRP  260 (328)
T ss_dssp             EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSC
T ss_pred             CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeee
Confidence            777666554          78999999988776665432 23578999999 7777777654  8999999876532111


Q ss_pred             -EecCCCceeEEEecCCCCeeEEee----ecCCeEEEEecccccceeeeeecccceeEeEEE
Q 021121          232 -LNGHGYAVRKVKFSPHRRNLLASC----SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       232 -~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  288 (317)
                       +.........++++|++.+++++.    ..++.|.+||.. ++ ++..+.. ......++|
T Consensus       261 ~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~-~~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          261 FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK-LIDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC-EEEEEEE-EESEEEEEE
T ss_pred             eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC-EEEEEEe-ccCcceEEE
Confidence             222245688999999665566666    568899999987 55 4444442 222345554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=9.3e-16  Score=137.43  Aligned_cols=249  Identities=8%  Similarity=-0.006  Sum_probs=159.6

Q ss_pred             cceeEEEEecCCCCeEEE-EEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe--
Q 021121            8 FNGYSVKFSPFYESRLAV-ATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS--   84 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~-~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--   84 (317)
                      ..+.+++|||+  ++.++ +....  ...+..|++||+..+... ... ... ......++|+||| ..|+.++.+..  
T Consensus       121 ~~~~~~~~SPD--G~~la~~~~~~--G~~~~~i~v~dl~tg~~~-~~~-~~~-~~~~~~~~wspDg-~~l~~~~~d~~~~  192 (695)
T 2bkl_A          121 VSLGTWAVSWD--GKKVAFAQKPN--AADEAVLHVIDVDSGEWS-KVD-VIE-GGKYATPKWTPDS-KGFYYEWLPTDPS  192 (695)
T ss_dssp             EEEEEEEECTT--SSEEEEEEEET--TCSCCEEEEEETTTCCBC-SSC-CBS-CCTTCCCEECTTS-SEEEEEECCCCTT
T ss_pred             EEEEEEEECCC--CCEEEEEECCC--CCceEEEEEEECCCCCCc-CCc-ccC-cccccceEEecCC-CEEEEEEecCCCC
Confidence            36889999994  55444 43320  001358999999887632 010 111 1112679999998 57777777665  


Q ss_pred             -----------EEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCCC----EEEEEEcCCCceeEEeecc
Q 021121           85 -----------VKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWDD----TVKLWTVDRPTSVRTFKEH  148 (317)
Q Consensus        85 -----------i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~  148 (317)
                                 |++|++.++... ..+.....+...+..+.|+|+|+ +|+.++.++    .|.+|+..+++ ...+..+
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~  270 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD-FRLLVKG  270 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS-CEEEEEC
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc-eEEeecC
Confidence                       999998765211 12223334556788999999998 555555444    67777665554 3445445


Q ss_pred             ccceEEEEEecCCCCeEEEEe---CCCeEEEEeCCCCCc---eeeeccC-ccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121          149 AYCVYNATWNPRHSDVFCSAS---GDCTLRIWDVREMGS---TMIIPAH-EFEILACDWNKYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d  221 (317)
                      ...+....+ +++. +++.+.   .++.|.+||+.+++.   ...+..+ ...+..++++  ++.++++...|+..++|.
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEE
Confidence            555666666 5534 555544   358899999987653   2333323 4457788887  677889999999888886


Q ss_pred             ccCCCccEEEEecC-CCceeEEEecCCCCeeEEeee---cCCeEEEEeccccc
Q 021121          222 VRNYRVPIAVLNGH-GYAVRKVKFSPHRRNLLASCS---YDMTVCLWDFMVED  270 (317)
Q Consensus       222 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~---~d~~i~vwd~~~~~  270 (317)
                      +.........+..+ ...+..+.++|+++.++++.+   ..+.|.+||+.+++
T Consensus       347 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          347 ATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            65222234445444 567888999999986555544   34679999998765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=2.7e-15  Score=135.41  Aligned_cols=241  Identities=17%  Similarity=0.075  Sum_probs=154.7

Q ss_pred             CCeeEEEecCCCCCeEEEEEcC-C----eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC------
Q 021121           61 DGVYDLAWSESHDSLLIAAVAD-G----SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD------  129 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~d-g----~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------  129 (317)
                      ..+..++|||||. +|+.+..+ |    .|++||+.++   +.+.. ..+...+..++|+|| + .|+.++.++      
T Consensus       163 ~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg---~~~~~-~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          163 TALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADG---KPLAD-ELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQA  235 (741)
T ss_dssp             EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTC---CEEEE-EEEEEESCCCEESTT-S-EEEEEECCCC-----
T ss_pred             EEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCC---CCCCc-cCCCceeccEEEECC-C-EEEEEEecCcccccc
Confidence            3688999999995 66655443 3    5999999876   32221 112222357899999 7 666665544      


Q ss_pred             --------EEEEEEcCCCce--eEEeec--cccceEEEEEecCCCCeEEEEeCC-----CeEEEEeCCCC--Cceeeecc
Q 021121          130 --------TVKLWTVDRPTS--VRTFKE--HAYCVYNATWNPRHSDVFCSASGD-----CTLRIWDVREM--GSTMIIPA  190 (317)
Q Consensus       130 --------~v~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~~~~  190 (317)
                              .|++|++.+++.  ...+..  +...+..+.|+|+ ++.++..+.+     ..|++||+.++  +....+..
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                    389999987753  222332  2235889999999 6766665543     38999999876  41444544


Q ss_pred             CccceEEEEecCCCCcEEEEEecC----CcEEEEEccCCC-ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          191 HEFEILACDWNKYDDCLIASASVD----KSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~~d----~~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      +........ +| +++.|+..+.+    +.|.+||+.+.. .....+..+...+..+.++  +..++++...|+..+||.
T Consensus       315 ~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          315 DLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             SSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEE
Confidence            444444443 46 67777766653    459999987742 2233444455567777887  334888999999888886


Q ss_pred             cccccceeeeeec-ccceeEeEEEEeccCCeEEEee---cCCcEEEEecCCC
Q 021121          266 FMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTG---WDELVYVWQQGMD  313 (317)
Q Consensus       266 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~  313 (317)
                      +.........+.. +.+.+..++++|++..++++.+   ..+.|++||+.++
T Consensus       391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            6522223344443 3567889999998444444433   4588999998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=7.2e-15  Score=120.57  Aligned_cols=227  Identities=11%  Similarity=0.109  Sum_probs=142.0

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc-------
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA-------   81 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------   81 (317)
                      .+..++|||+  ++.++.....-. .+...|.+|++..+.  ...+.  .... +..++|+|++. .|+.++.       
T Consensus        60 ~~~~~~~SpD--g~~la~~~~~~~-~~~~~l~~~~~~~g~--~~~l~--~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~  130 (347)
T 2gop_A           60 NATMPRISPD--GKKIAFMRANEE-KKVSEIWVADLETLS--SKKIL--EAKN-IRSLEWNEDSR-KLLIVGFKRREDED  130 (347)
T ss_dssp             SCEEEEECTT--SSEEEEEEEETT-TTEEEEEEEETTTTE--EEEEE--EESE-EEEEEECTTSS-EEEEEEECCCC---
T ss_pred             cCCCeEECCC--CCEEEEEEeccC-CCcceEEEEECCCCc--eEEEE--cCCC-ccceeECCCCC-EEEEEEccCCCcCC
Confidence            4677999994  544443332100 002247777776543  22222  2233 99999999985 6666553       


Q ss_pred             --------------------CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC------C-EEEEE
Q 021121           82 --------------------DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD------D-TVKLW  134 (317)
Q Consensus        82 --------------------dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g-~v~iw  134 (317)
                                          ...|.+|++..+   +.+..+.. . .+..+.|+|++  +++++..+      . ...+|
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~  203 (347)
T 2gop_A          131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIY  203 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEE
T ss_pred             cEEEcccceeecCcccccCccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEE
Confidence                                256888888754   33233333 3 78889999998  66666543      2 33444


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC--------CeEEEEeCCCCCceeeeccCccceEE-EEecCCCC
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD--------CTLRIWDVREMGSTMIIPAHEFEILA-CDWNKYDD  205 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~-i~~~~~~~  205 (317)
                      .+.+++ ...+..+ ..+..+  +|+ ++.++.++.+        ..|.+||  +++.......+...+.. +.|+  ++
T Consensus       204 ~~d~~~-~~~l~~~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg  274 (347)
T 2gop_A          204 IWEDGK-EEKMFEK-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK  274 (347)
T ss_dssp             EEETTE-EEEEEEE-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE
T ss_pred             EeCCCc-eEEeccC-cceeeE--CCC-CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc
Confidence            444444 3444434 555554  898 6666555533        4688888  55544444555667776 8897  56


Q ss_pred             cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeE-EEEecc
Q 021121          206 CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV-CLWDFM  267 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i-~vwd~~  267 (317)
                       ++++++.++.+++| +.+++  ...+..+...|.+++|+|  . ++++++.++.. .+|.+.
T Consensus       275 -~~~~~~~~~~~~l~-~~~g~--~~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          275 -VYFTLFEEGSVNLY-IWDGE--IKPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -EEEEEEETTEEEEE-EESSS--EEEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES
T ss_pred             -EEEEEecCCcEEEE-EcCCc--eEEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC
Confidence             88899999999999 87433  344445677899999999  4 67777766654 777765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.73  E-value=1.3e-14  Score=117.23  Aligned_cols=240  Identities=8%  Similarity=0.039  Sum_probs=161.6

Q ss_pred             CCCCeeEEEecCCCCCeEEE-------EEcCCeEEEEEeCCCCCCCCceeec-----cCCcceEEEEEecC-CCCEEEEE
Q 021121           59 TADGVYDLAWSESHDSLLIA-------AVADGSVKIYDTALPPTANPIRSLH-----EHTREVHSADYNPT-RRDSFITS  125 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~-------~~~dg~i~v~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~-~~~~l~~~  125 (317)
                      .-....+++|.+++ .++++       +..++.|.+|+...+   +. ..+.     ++...+.+++++++ +. ++++.
T Consensus        16 ~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g---~~-~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~   89 (314)
T 1pjx_A           16 DIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTG---KK-TVICKPEVNGYGGIPAGCQCDRDANQ-LFVAD   89 (314)
T ss_dssp             CCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTC---CE-EEEECCEETTEECCEEEEEECSSSSE-EEEEE
T ss_pred             cCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCC---cE-EEEEecccCCCCCCCceEEEecCCCc-EEEEE
Confidence            34457889999887 56666       567889999997654   22 2222     24567899999998 65 44444


Q ss_pred             cCCCEEEEEEcCCCceeEE-eec----cccceEEEEEecCCCCeEEEEeCC---------------CeEEEEeCCCCCce
Q 021121          126 SWDDTVKLWTVDRPTSVRT-FKE----HAYCVYNATWNPRHSDVFCSASGD---------------CTLRIWDVREMGST  185 (317)
Q Consensus       126 ~~dg~v~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~  185 (317)
                      . .+.|.+||.+ ++.... ...    ....+.++++.++ ++++++...+               +.|..+|.. ++..
T Consensus        90 ~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           90 M-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             T-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             C-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence            4 4589999988 654322 211    1235889999998 7777766554               578888765 4433


Q ss_pred             eeeccCccceEEEEec----CCCCcEE-EEEecCCcEEEEEcc-CCCc----cEEEEecCC-CceeEEEecCCCCeeEEe
Q 021121          186 MIIPAHEFEILACDWN----KYDDCLI-ASASVDKSIKIWDVR-NYRV----PIAVLNGHG-YAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~----~~~~~~l-~~~~~d~~i~v~d~~-~~~~----~~~~~~~~~-~~v~~~~~~~~~~~~l~~  254 (317)
                      . +..+......++++    | +++.+ ++...++.|.+||.. .++.    ....+..+. ..+..++++++|. ++++
T Consensus       166 ~-~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~  242 (314)
T 1pjx_A          166 Q-VDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVA  242 (314)
T ss_dssp             E-EEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEE
T ss_pred             E-eccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEE
Confidence            2 22233446788999    8 77554 444567899999986 3221    122233333 5678999999997 6776


Q ss_pred             eecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC-eEEEeecCCcEEEEecCCC
Q 021121          255 CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       255 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~  313 (317)
                      ...++.|.+||..+++ ....+..+...+.+++|+|+ ++ ++++...++.|..|++...
T Consensus       243 ~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~i~~~~d-g~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQ-TKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTT-SSEEEEEETTTTEEEEEECSSC
T ss_pred             EcCCCEEEEEcCCCCc-EeEEEeCCCCCceeEEECCC-CCEEEEEeCCCCeEEEEeCCCC
Confidence            6678899999987655 33455555577899999998 56 5556666788999998754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.72  E-value=2.1e-14  Score=116.11  Aligned_cols=242  Identities=10%  Similarity=0.110  Sum_probs=159.5

Q ss_pred             ceeEEEEecCCCCeEEEE-------EecccccccCceEEEEecCCCCCcceeeee---ecCCCCeeEEEecCC-CCCeEE
Q 021121            9 NGYSVKFSPFYESRLAVA-------TAQNFGILGNGRVHVLDLSPAAPALTELVA---FDTADGVYDLAWSES-HDSLLI   77 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~-------~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~~l~   77 (317)
                      .+.+++|+|  ++.+.++       ...      ++.|.+|+.....  ...+..   ..+...+..++++++ + . +.
T Consensus        19 ~~~~~~~~~--~g~l~~~~~~~~~~~~~------~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~~~~~g-~-l~   86 (314)
T 1pjx_A           19 GAEGPVFDK--NGDFYIVAPEVEVNGKP------AGEILRIDLKTGK--KTVICKPEVNGYGGIPAGCQCDRDAN-Q-LF   86 (314)
T ss_dssp             TCEEEEECT--TSCEEEEETTCEETTEE------CCEEEEECTTTCC--EEEEECCEETTEECCEEEEEECSSSS-E-EE
T ss_pred             CccCceECC--CCCEEEEEeccccCCCC------CCEEEEEeCCCCc--EEEEEecccCCCCCCCceEEEecCCC-c-EE
Confidence            457899998  5677766       232      7799999976654  222211   013356899999998 5 3 44


Q ss_pred             EEEcCCeEEEEEeCCCCCCCCc-ee-ec-cCCcceEEEEEecCCCCEEEEEcCC---------------CEEEEEEcCCC
Q 021121           78 AAVADGSVKIYDTALPPTANPI-RS-LH-EHTREVHSADYNPTRRDSFITSSWD---------------DTVKLWTVDRP  139 (317)
Q Consensus        78 ~~~~dg~i~v~~~~~~~~~~~~-~~-~~-~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~iwd~~~~  139 (317)
                      .+...+.|.+||.+ ++ .... .. .. .....+.++++.+++. ++++...+               +.|..+|.. +
T Consensus        87 v~~~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (314)
T 1pjx_A           87 VADMRLGLLVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EEETTTEEEEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             EEECCCCEEEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence            44445578899976 41 1111 11 01 1224588999999987 66666554               578888776 5


Q ss_pred             ceeEEeeccccceEEEEEe----cCCCCeEEEEeCCCeEEEEeCC-CCC-----ceeeeccCc-cceEEEEecCCCCcEE
Q 021121          140 TSVRTFKEHAYCVYNATWN----PRHSDVFCSASGDCTLRIWDVR-EMG-----STMIIPAHE-FEILACDWNKYDDCLI  208 (317)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~i~~~~~~~~~l  208 (317)
                      +... +..+......++++    |++..++++...++.|.+||++ +++     ....+..+. ..+..+++++ +++++
T Consensus       163 ~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~  240 (314)
T 1pjx_A          163 QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLL  240 (314)
T ss_dssp             CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEE
T ss_pred             CEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEE
Confidence            4433 32334457889999    9832445555678899999986 332     122223332 5578899999 88888


Q ss_pred             EEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          209 ASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       209 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ++...++.|.+||..+++. ...+..+...+.+++|+|+++.++++...++.|..|++...
T Consensus       241 v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8887888999999875443 44555565788999999999855555556788999998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.72  E-value=1.7e-13  Score=113.07  Aligned_cols=257  Identities=12%  Similarity=0.028  Sum_probs=165.5

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----------cCCeEEEEEeCCCCCCCCceeeccC--
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----------ADGSVKIYDTALPPTANPIRSLHEH--  105 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~~~--  105 (317)
                      .|.+||..+..    .+........- .++++||+. .++++.          .++.|.+||..+.   +.+..+...  
T Consensus        48 ~v~v~D~~t~~----~~~~i~~g~~p-~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~---~~~~~i~~~~~  118 (373)
T 2mad_H           48 QQWVLDAGSGS----ILGHVNGGFLP-NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTF---LPIADIELPDA  118 (373)
T ss_pred             EEEEEECCCCe----EEEEecCCCCC-CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCC---cEEEEEECCCc
Confidence            88999987654    22333333333 999999995 666654          3678999998754   333332211  


Q ss_pred             -----CcceEEEEEecCCCCEEEEEcC--CCEEEEEEcCCCceeEE-eeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121          106 -----TREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRT-FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW  177 (317)
Q Consensus       106 -----~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (317)
                           ......+.|+|+|+ +|+++..  ++.|.++| .+++.+.. +... .   ++.+.|++...+++.+.||.+.++
T Consensus       119 ~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~v  192 (373)
T 2mad_H          119 PRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             cccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEE
Confidence                 12345789999999 6666653  58899999 99988777 5432 2   245667766777888899999999


Q ss_pred             eCCCCCceeeec-----cCccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCCcc-EEEEec----------CCCcee
Q 021121          178 DVREMGSTMIIP-----AHEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-IAVLNG----------HGYAVR  240 (317)
Q Consensus       178 d~~~~~~~~~~~-----~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~----------~~~~v~  240 (317)
                      |. +++......     ....++ ....+.+..+.++++ +..+.+.+.|+...... ...+..          ......
T Consensus       193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  270 (373)
T 2mad_H          193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence            99 776653321     111221 234556633444444 46789999998754321 111110          112244


Q ss_pred             EEEecCCCCeeEEeee---------cCCeEEEEecccccceeeeeecccceeEeEEEEeccCC-eEEEee-cCCcEEEEe
Q 021121          241 KVKFSPHRRNLLASCS---------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTG-WDELVYVWQ  309 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~i~~w~  309 (317)
                      .+.++|+++.++++..         ..+.|.++|+.+.+ .+..+.. .....+++|+|+ ++ +++++. .++.|.++|
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~-vv~~i~~-g~~p~~i~~s~D-g~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQISL-GHDVDAISVAQD-GGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE-EEEEEEC-CCCcCeEEECCC-CCeEEEEEcCCCCeEEEEE
Confidence            5789999886444432         23579999999886 4455542 335789999999 55 777777 589999999


Q ss_pred             cCCCC
Q 021121          310 QGMDP  314 (317)
Q Consensus       310 ~~~~~  314 (317)
                      +.+.+
T Consensus       348 ~~t~~  352 (373)
T 2mad_H          348 AGAGD  352 (373)
T ss_pred             CCCCC
Confidence            98754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=1.7e-14  Score=114.15  Aligned_cols=234  Identities=8%  Similarity=0.029  Sum_probs=165.1

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCC--CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTA--DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN   97 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~   97 (317)
                      ++.++++++.      ++.|++||.++++.    +-.+...  ..+.++.+.|+| ++++  +.++.|..||. ++   +
T Consensus         4 ~~~~lv~~~~------~~~v~~~d~~tG~~----~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G---~   66 (276)
T 3no2_A            4 PQHLLVGGSG------WNKIAIINKDTKEI----VWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DG---R   66 (276)
T ss_dssp             CCEEEEECTT------CSEEEEEETTTTEE----EEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TS---C
T ss_pred             CCcEEEeeCC------CCEEEEEECCCCeE----EEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CC---C
Confidence            4677777765      89999999876652    2222222  468899999998 4776  45778999997 44   5


Q ss_pred             CceeeccC-CcceEEEEEecCCCCEEEEEcC-CCEEEEEEcCCCceeEEeec------cccceEEEEEecCCCCeEEEEe
Q 021121           98 PIRSLHEH-TREVHSADYNPTRRDSFITSSW-DDTVKLWTVDRPTSVRTFKE------HAYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus        98 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~  169 (317)
                      .+..+..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +++.+..+..      +......++..++ ++++++..
T Consensus        67 ~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~  143 (276)
T 3no2_A           67 ELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK-GNYLVPLF  143 (276)
T ss_dssp             EEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT-SCEEEEET
T ss_pred             EEEEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC-CCEEEEec
Confidence            66666654 35788899999998 7777776 788888886 6777666642      2224556677887 88999999


Q ss_pred             CCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC------CceeEEE
Q 021121          170 GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG------YAVRKVK  243 (317)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~~v~~~~  243 (317)
                      .++.|..||.+ ++.+..+... ..+.++...+ ++++++++..++.|..+|..+++. +..+..+.      ..+..++
T Consensus       144 ~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~l~~~~~~~  219 (276)
T 3no2_A          144 ATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRI-VRRVNANDIEGVQLFFVAQLF  219 (276)
T ss_dssp             TTTEEEEECTT-SCEEEEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCE-EEEEEGGGSBSCCCSEEEEEE
T ss_pred             CCCEEEEECCC-CCEEEEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcE-EEEecCCCCCCccccccccce
Confidence            99999999988 8888888754 3456677788 899999988888999999987774 55554322      2377888


Q ss_pred             ecCCCCeeEEeeecC--------CeEEEEecccccceeeeeec
Q 021121          244 FSPHRRNLLASCSYD--------MTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       244 ~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~  278 (317)
                      ..+++. ++++....        +..+++++.....++-.+..
T Consensus       220 ~~~~G~-i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          220 PLQNGG-LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             ECTTSC-EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             EcCCCC-EEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            999987 55554311        23456666433345544444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.70  E-value=4.3e-14  Score=118.28  Aligned_cols=235  Identities=8%  Similarity=0.035  Sum_probs=163.1

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC--EEEEEEcCCC
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD--TVKLWTVDRP  139 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~  139 (317)
                      ....|+|++++ .++++...++.|++||...+   ........ ..... ++|++++. .|+++..++  .|.+++..++
T Consensus       132 ~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g---~~~~~~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          132 YMWGIAAVGNN-TVLAYQRDDPRVRLISVDDN---KVTTVHPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CEEEEEECSTT-EEEEEETTTTEEEEEETTTT---EEEEEEET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGT
T ss_pred             CceEEEEeCCC-CEEEEecCCCcEEEEECCCC---EEEEeecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCC
Confidence            57789999987 47777767789999998754   22222222 22233 89999998 777777655  8999998876


Q ss_pred             ceeEEe----eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee----eccCccce-E-EEEecCCCCcEEE
Q 021121          140 TSVRTF----KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI----IPAHEFEI-L-ACDWNKYDDCLIA  209 (317)
Q Consensus       140 ~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v-~-~i~~~~~~~~~l~  209 (317)
                      .....+    ......+.+++++|+++.++ .+..++.|+.||..++.....    ..+....- . .++++|.++.+++
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~ly-v~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEE-EECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEE-EEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            554444    21445678999999635555 477788999999987653322    11121111 2 8999995577777


Q ss_pred             EEecCCcEEEEEccCCCccEEEEecCC---------------CceeEEEecCCCCeeEEeee-cCCeEEEEeccccccee
Q 021121          210 SASVDKSIKIWDVRNYRVPIAVLNGHG---------------YAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALV  273 (317)
Q Consensus       210 ~~~~d~~i~v~d~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~  273 (317)
                      +-..++.|+.|+....   ...+.++.               .....++++|++. ++++-. .++.|+.|++.++.  +
T Consensus       284 ~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~--v  357 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY--V  357 (409)
T ss_dssp             EETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE--E
T ss_pred             EeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE--E
Confidence            7777889999987643   33333322               3478999999998 777777 78999999976664  2


Q ss_pred             eeeecc---------------cceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          274 GRYDHH---------------TEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       274 ~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ..+.++               -....+++++++ +.++++-..++.|+.++++
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence            333333               235789999998 7788888888889888763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.70  E-value=1.8e-13  Score=109.63  Aligned_cols=239  Identities=8%  Similarity=-0.047  Sum_probs=164.0

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP  139 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  139 (317)
                      ...+.++++.+++ .+.++...++.|.+|+.. + .... ..+......+.++++.+++. ++++...++.|..+|.. +
T Consensus        19 ~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           19 DSGPYGITSSEDG-KVWFTQHKANKISSLDQS-G-RIKE-FEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-S-CEEE-EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeeECCCC-CEEEEcCCCCeEEEECCC-C-ceEE-EECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-C
Confidence            4568899999987 466665567899999976 3 1111 12223346789999999887 77777768899999988 5


Q ss_pred             ceeE-EeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          140 TSVR-TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       140 ~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                      +... ........+.++++.++ ++++++...++.|..+|.. ++... .+......+..+++++ +++++++...++.|
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSI  169 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEE
T ss_pred             CeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeE
Confidence            5432 22223466899999987 7777777768899999987 44432 2232345688999999 88877776667889


Q ss_pred             EEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEE
Q 021121          218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      ..||. +++........+...+..+++++++. +.++....+.|.+||. +++........+...+.+++++++ +.+++
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v  245 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN-SEIWF  245 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST-TCEEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC-CCEEE
Confidence            99998 44422222223445688999999886 5666556778999998 443222222334456889999998 66666


Q ss_pred             EeecCCcEEEEecC
Q 021121          298 STGWDELVYVWQQG  311 (317)
Q Consensus       298 s~~~dg~i~~w~~~  311 (317)
                      +...++.|..|+..
T Consensus       246 ~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          246 TEWGANQIGRITND  259 (300)
T ss_dssp             EETTTTEEEEECTT
T ss_pred             eccCCCeEEEECCC
Confidence            66567888888863

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.69  E-value=9.2e-14  Score=111.48  Aligned_cols=225  Identities=11%  Similarity=0.067  Sum_probs=150.4

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      -..+..|+|++..++++...++.|..||...+   . ...+ .....+.+++++++++ ++++ . ++.|.+||.++++.
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---~-~~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---Q-VQRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTC---C-EEEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCC---c-EEEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCcE
Confidence            34578899976667777778899999998754   2 2222 2356799999999998 5554 3 56899999987765


Q ss_pred             eEEeec----cccceEEEEEecCCCCeEEEEeC-----------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121          142 VRTFKE----HAYCVYNATWNPRHSDVFCSASG-----------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       142 ~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      ......    ....++.++++|+ ++++++...           .+.|..+|.. ++ ...+.......+.++|+| +++
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~sp-dg~  161 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSL-DHK  161 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECT-TSC
T ss_pred             EEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcC-CCC
Confidence            433221    1245889999998 676665422           2345555543 22 333333334568899999 776


Q ss_pred             EE-EEEecCCcEEEEEcc--CCCc----cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc
Q 021121          207 LI-ASASVDKSIKIWDVR--NYRV----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH  279 (317)
Q Consensus       207 ~l-~~~~~d~~i~v~d~~--~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  279 (317)
                      .+ ++.+.++.|.+||+.  ++..    ....+..+......++++++|. +.++....+.|..||..+++ ++..+..+
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~-~~~~i~~p  239 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGK-RLQTVKLP  239 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCC-EEEEEECS
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCce-EEEEEECC
Confidence            54 556667899999973  3321    1122223345678999999997 66666677889999988776 55666666


Q ss_pred             cceeEeEEEE-eccCCeEEEee
Q 021121          280 TEFAVGVDMS-VLVEGLLASTG  300 (317)
Q Consensus       280 ~~~v~~~~~~-~~~~~~l~s~~  300 (317)
                      ...+++++|. |+++.++++..
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCceEEEEeCCCCCEEEEEcC
Confidence            6779999999 77444555544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.69  E-value=1.5e-13  Score=110.23  Aligned_cols=228  Identities=10%  Similarity=0.078  Sum_probs=150.3

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      ..+..|+|+ ++.++.+...      .+.|+.||.....  .   ..+.....+.++++++++. +++ +. ++.|.+||
T Consensus        15 ~Egp~w~~~-~~~l~~~d~~------~~~i~~~d~~~~~--~---~~~~~~~~~~~i~~~~dG~-l~v-~~-~~~l~~~d   79 (297)
T 3g4e_A           15 GESPVWEEV-SNSLLFVDIP------AKKVCRWDSFTKQ--V---QRVTMDAPVSSVALRQSGG-YVA-TI-GTKFCALN   79 (297)
T ss_dssp             EEEEEEETT-TTEEEEEETT------TTEEEEEETTTCC--E---EEEECSSCEEEEEEBTTSS-EEE-EE-TTEEEEEE
T ss_pred             ccCCeEECC-CCEEEEEECC------CCEEEEEECCCCc--E---EEEeCCCceEEEEECCCCC-EEE-EE-CCeEEEEE
Confidence            457889995 4556665543      7899999987654  2   2234567899999999984 444 44 56799999


Q ss_pred             eCCCCCCCCceeec--cCCcceEEEEEecCCCCEEEEEcC-----------CCEEEEEEcCCCceeEEeeccccceEEEE
Q 021121           90 TALPPTANPIRSLH--EHTREVHSADYNPTRRDSFITSSW-----------DDTVKLWTVDRPTSVRTFKEHAYCVYNAT  156 (317)
Q Consensus        90 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~  156 (317)
                      .+++. ...+....  .....+..++++|+|. ++++...           .+.|..++.. ++. ..+.......+.++
T Consensus        80 ~~~g~-~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~  155 (297)
T 3g4e_A           80 WKEQS-AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLD  155 (297)
T ss_dssp             TTTTE-EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEE
T ss_pred             CCCCc-EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceE
Confidence            86541 11111111  1234578999999998 5554422           2345444443 333 33333445578999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeC--CCCCce-----eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDV--REMGST-----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI  229 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  229 (317)
                      |+|++..++++.+.++.|.+||+  .++...     ..+.........+++++ ++++.++...++.|.+||..+++. +
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~-~  233 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKR-L  233 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCE-E
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceE-E
Confidence            99994345566677889999987  344321     12222335678899999 888888887788899999987663 6


Q ss_pred             EEEecCCCceeEEEec-CCCCeeEEeeecC
Q 021121          230 AVLNGHGYAVRKVKFS-PHRRNLLASCSYD  258 (317)
Q Consensus       230 ~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d  258 (317)
                      ..+..+...+++++|. |+++.++++...+
T Consensus       234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          234 QTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            6666666789999998 8888666665544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.69  E-value=3.4e-14  Score=116.48  Aligned_cols=174  Identities=16%  Similarity=0.124  Sum_probs=132.4

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCC--------CCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEE
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPP--------TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKL  133 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  133 (317)
                      .++.+++++.. .++++|+.++ +.+|+++...        ..++... ..+.. |+.++|  ++. .|+++ .++.|++
T Consensus        39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGD-QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence            68999999987 5888888875 7779875331        1122222 23566 999999  666 78888 8899999


Q ss_pred             EEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec
Q 021121          134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      ||+.+.........+..++.++.+.+.   .+++++.||.|.+||+.++....    +...|.|++|+| ++  ++.|..
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp-kG--~~vg~~  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN-SQ--LAVLLK  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS-SE--EEEEET
T ss_pred             EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC-Cc--eEEEEc
Confidence            999887766667777888888887754   28889999999999999776543    446899999999 77  677889


Q ss_pred             CCcEEEEEccCCCcc-EEEE------e---cCCCceeEEEecCCCCeeEEe
Q 021121          214 DKSIKIWDVRNYRVP-IAVL------N---GHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       214 d~~i~v~d~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~~l~~  254 (317)
                      ||.+++|+....... ...+      .   +|...|.++.|.+++. ++++
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~  230 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV  230 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence            999999988765421 2334      2   3778999999999887 5555

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.68  E-value=1.7e-13  Score=114.72  Aligned_cols=234  Identities=7%  Similarity=0.020  Sum_probs=158.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC--eEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG--SVK   86 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~   86 (317)
                      .+..++|+|  ++.+.++...      ++.|++||.+...  ...+.  ....... ++|+|+++ .|+++..++  .|.
T Consensus       132 ~P~~la~d~--~g~lyv~d~~------~~~I~~id~~~g~--~~~~~--~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I~  197 (409)
T 3hrp_A          132 YMWGIAAVG--NNTVLAYQRD------DPRVRLISVDDNK--VTTVH--PGFKGGK-PAVTKDKQ-RVYSIGWEGTHTVY  197 (409)
T ss_dssp             CEEEEEECS--TTEEEEEETT------TTEEEEEETTTTE--EEEEE--ETCCBCB-CEECTTSS-EEEEEBSSTTCEEE
T ss_pred             CceEEEEeC--CCCEEEEecC------CCcEEEEECCCCE--EEEee--ccCCCCc-eeEecCCC-cEEEEecCCCceEE
Confidence            577899999  6777777654      7899999987653  22222  2223334 99999984 777776655  788


Q ss_pred             EEEeCCCCCCCCceee----ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE----eeccccce-E-EEE
Q 021121           87 IYDTALPPTANPIRSL----HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT----FKEHAYCV-Y-NAT  156 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v-~-~~~  156 (317)
                      +++....   .....+    ......+.+++++|++. .|+.+..++.|+.||..++.....    .......- . .++
T Consensus       198 ~~d~~~~---~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          198 VYMKASG---WAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             EEEGGGT---TCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred             EEEcCCC---ceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence            8887643   222222    21446678899999555 455577789999999987754322    11122211 3 999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc---------------cceEEEEecCCCCcEEEEEe-cCCcEEEE
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE---------------FEILACDWNKYDDCLIASAS-VDKSIKIW  220 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~v~~i~~~~~~~~~l~~~~-~d~~i~v~  220 (317)
                      |+|+++.++++-..++.|+.|+....  ...+.++.               .....++++| +++++++-. .++.|+.|
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEE
Confidence            99975777777778899999997643  22332221               3468899999 888888877 78999999


Q ss_pred             EccCCCccEEEEecC---------------CCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          221 DVRNYRVPIAVLNGH---------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       221 d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      |+.++.  +..+.++               -.....++++|++. ++++-..++.|+.+++
T Consensus       351 ~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          351 DILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             ECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            976654  4444443               13578999999975 7777777888887765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.68  E-value=4.2e-14  Score=115.98  Aligned_cols=174  Identities=11%  Similarity=0.075  Sum_probs=128.5

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC-------CcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA-------PALTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ++..+++++. .+.+++++.       + .+.+|+++.-.       ...........+. |+.++|  ++ .+|+++ .
T Consensus        39 ~~nlLais~~-~gll~a~~~-------~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASG-------S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEET-------T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-E
T ss_pred             cccEEEEcCC-CCEEEEeCC-------C-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-c
Confidence            5889999994 455444443       3 77779875321       0122223345666 999999  66 688888 8


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ++.|++||+...   ........|..++.++.+.+.   .+++++.||.|.+||+.++....    +...|.+++|+|+ 
T Consensus       105 ~~~l~v~dv~sl---~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk-  173 (388)
T 1xip_A          105 RNALYSLDLEEL---SEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS-  173 (388)
T ss_dssp             SSEEEEEESSST---TCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS-
T ss_pred             CCcEEEEEchhh---hccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC-
Confidence            899999999865   333445567778888877654   38888999999999999877643    4567999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCc--eeee------c---cCccceEEEEecCCCCcEEEE
Q 021121          162 SDVFCSASGDCTLRIWDVREMGS--TMII------P---AHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~--~~~~------~---~~~~~v~~i~~~~~~~~~l~~  210 (317)
                      +  ++.|..||++++|+....+.  ...+      .   +|...|.++.|.+ ++.++++
T Consensus       174 G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          174 Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            5  67899999999999887664  4445      2   3678899999999 8888776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.66  E-value=3.3e-13  Score=110.24  Aligned_cols=262  Identities=10%  Similarity=0.056  Sum_probs=166.4

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----------cCCeEEEEEeCCCCCCCCceeeccC
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----------ADGSVKIYDTALPPTANPIRSLHEH  105 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~~~  105 (317)
                      ++.|.++|..+..    .+.......... ++++|++. .++++.          .++.|.+||..+.   +....+...
T Consensus        58 ~~~V~ViD~~t~~----v~~~I~vG~~P~-va~spDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~---~v~~~I~v~  128 (386)
T 3sjl_D           58 VTQQFVIDGEAGR----VIGMIDGGFLPN-PVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTL---LPTADIELP  128 (386)
T ss_dssp             SEEEEEEETTTTE----EEEEEEECSSCE-EEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEEEEEET
T ss_pred             CCEEEEEECCCCe----EEEEEECCCCCc-EEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCC---eEEEEEECC
Confidence            5699999988754    222222222234 99999995 554443          3678999998876   444443211


Q ss_pred             -------CcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEE
Q 021121          106 -------TREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI  176 (317)
Q Consensus       106 -------~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (317)
                             ......+.|+|+|+ +++++.  .++.|.++|+.+++.+.++.....    ....|.+...+++.+.||++.+
T Consensus       129 ~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P~g~~~~~~~~~DG~~~~  203 (386)
T 3sjl_D          129 DAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFPTAPDTFFMHCRDGSLAK  203 (386)
T ss_dssp             TCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSCEEE
T ss_pred             CccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeecCCCceeEEECCCCCEEE
Confidence                   12345689999998 666554  368999999999999888864221    2233554677778889999999


Q ss_pred             EeCCC-CCceeeecc----Cccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCCcc-EEEEe----------cCCCce
Q 021121          177 WDVRE-MGSTMIIPA----HEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-IAVLN----------GHGYAV  239 (317)
Q Consensus       177 ~d~~~-~~~~~~~~~----~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~----------~~~~~v  239 (317)
                      .++.+ ++.......    ...++ ....|.+.++++++ .+.+|.+++.|..+.... ...+.          ......
T Consensus       204 v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~  282 (386)
T 3sjl_D          204 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  282 (386)
T ss_dssp             EECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             EECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence            99876 444221111    11222 12455433776555 455899999999765421 11111          012234


Q ss_pred             eEEEecCCCCeeEEeeec---------CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe-ecCCcEEEEe
Q 021121          240 RKVKFSPHRRNLLASCSY---------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST-GWDELVYVWQ  309 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~~w~  309 (317)
                      ..++++|++++++++-..         .+.|.+.|+.+.+. +..+.- ...+.++++++++..+|++. ..++.|.++|
T Consensus       283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-EEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            468889998865544321         25799999999874 444443 23688999999943366654 5689999999


Q ss_pred             cCCCC
Q 021121          310 QGMDP  314 (317)
Q Consensus       310 ~~~~~  314 (317)
                      ..+..
T Consensus       361 ~~t~k  365 (386)
T 3sjl_D          361 AESGE  365 (386)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            97653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=2.7e-13  Score=122.39  Aligned_cols=246  Identities=17%  Similarity=0.117  Sum_probs=152.7

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccC--ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC---
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGN--GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG---   83 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---   83 (317)
                      .+..++|||  +++.++......   ++  ..|++||+..+..  ....  .....+..++|+|| + .|+.++.++   
T Consensus       164 ~~~~~~~SP--DG~~la~~~~~~---G~e~~~i~v~dl~tg~~--~~~~--~~~~~~~~~~wspD-~-~l~~~~~~~~~~  232 (741)
T 1yr2_A          164 ALDAWAASD--DGRLLAYSVQDG---GSDWRTVKFVGVADGKP--LADE--LKWVKFSGLAWLGN-D-ALLYSRFAEPKE  232 (741)
T ss_dssp             EEEEEEECT--TSSEEEEEEEET---TCSEEEEEEEETTTCCE--EEEE--EEEEESCCCEESTT-S-EEEEEECCCC--
T ss_pred             EEEeEEECC--CCCEEEEEEcCC---CCceEEEEEEECCCCCC--CCcc--CCCceeccEEEECC-C-EEEEEEecCccc
Confidence            577899999  455444433210   11  4699999988763  1111  11112357899999 5 555555544   


Q ss_pred             -----------eEEEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCC--ceeEE
Q 021121           84 -----------SVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRP--TSVRT  144 (317)
Q Consensus        84 -----------~i~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~--~~~~~  144 (317)
                                 .|.+|++.++... ..+.....+...+..+.|+|+|+ +|+..+.+     ..|++||+.++  +....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                       3888887654211 11222223334588999999998 66655543     48999999877  41455


Q ss_pred             eeccccceEEEEEecCCCCeEEEEeC----CCeEEEEeCCCC--CceeeeccCccceEEEEecCCCCcEEEEEecCCcEE
Q 021121          145 FKEHAYCVYNATWNPRHSDVFCSASG----DCTLRIWDVREM--GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK  218 (317)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  218 (317)
                      +..+........ .|+ ++.|+..+.    ++.|.+||+.++  +....+..+...+..+.+.  ++.++++...|+..+
T Consensus       312 l~~~~~~~~~~~-~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          312 LIPDLKAQWDFV-DGV-GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EECSSSSCEEEE-EEE-TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEE
T ss_pred             ecCCCCceEEEE-ecc-CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEE
Confidence            554544455443 477 566666554    455999999874  2233344444456677776  567888888899877


Q ss_pred             EEEccCCCccEEEEec-CCCceeEEEecCCCCeeEEeee---cCCeEEEEeccccc
Q 021121          219 IWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRNLLASCS---YDMTVCLWDFMVED  270 (317)
Q Consensus       219 v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~---~d~~i~vwd~~~~~  270 (317)
                      +|.+.........+.. +...+..+.++|+++.++++.+   ..++|.+||+.+++
T Consensus       388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7765522223444443 3567889999999886555444   34789999998765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.66  E-value=2.9e-13  Score=112.52  Aligned_cols=260  Identities=11%  Similarity=0.059  Sum_probs=168.7

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----------cCCeEEEEEeCCCCCCCCceeeccC-
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----------ADGSVKIYDTALPPTANPIRSLHEH-  105 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~~~-  105 (317)
                      +.|.++|..+..    .+..+.....- .++++|++. .++++.          .++.|.++|..+.   +.+..+.-. 
T Consensus        99 ~~VsVID~~t~~----vv~~I~vG~~P-gia~SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~---~vv~~I~v~g  169 (426)
T 3c75_H           99 TQQFVIDGSTGR----ILGMTDGGFLP-HPVAAEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTF---LPIADIELPD  169 (426)
T ss_dssp             EEEEEEETTTTE----EEEEEEECSSC-EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEEEEEETT
T ss_pred             CeEEEEECCCCE----EEEEEECCCCC-ceEECCCCC-EEEEEeccccccccCCCCCEEEEEECCCC---cEEEEEECCC
Confidence            799999998764    22323222233 899999995 555443          4678999998765   444433211 


Q ss_pred             ------CcceEEEEEecCCCCEEEEEcC--CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEE
Q 021121          106 ------TREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW  177 (317)
Q Consensus       106 ------~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (317)
                            ......+.++|+++ +++++..  ++.|.+.|+.+++.+..+.....    ....|++...+++.+.||.+.+.
T Consensus       170 ~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          170 APRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             CCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEE
T ss_pred             ccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEE
Confidence                  12345689999998 6666553  68999999999998888764321    33445545677778888988888


Q ss_pred             eCCCCCceee----eccCccce-EEEEecCCCCcEEEEEecCCcEEEEEccCCCccE-EEEe---c-------CCCceeE
Q 021121          178 DVREMGSTMI----IPAHEFEI-LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI-AVLN---G-------HGYAVRK  241 (317)
Q Consensus       178 d~~~~~~~~~----~~~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~---~-------~~~~v~~  241 (317)
                      +..+++....    +.....++ ..+.+.+ ++..++.....+.+.+.|.......+ ..+.   .       .......
T Consensus       245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~  323 (426)
T 3c75_H          245 DFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ  323 (426)
T ss_dssp             ECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred             ECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence            8855544421    11111221 2356788 66666666778999999987543111 0010   0       0112234


Q ss_pred             EEecCCCCeeEEeeec---------CCeEEEEecccccceeeeeecccceeEeEEEEeccCC-eEEEee-cCCcEEEEec
Q 021121          242 VKFSPHRRNLLASCSY---------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTG-WDELVYVWQQ  310 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~i~~w~~  310 (317)
                      ++++|++++++++...         ++.|.+.|+.+.+ .+..+.. .....++.|+|+ ++ ++++.. .++.|.++|+
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k-vv~~I~v-g~~P~gia~spD-g~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE-RINKIEL-GHEIDSINVSQD-AEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEE-EEEECEEEECCS-SSCEEEEEETTTTEEEEEET
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe-EEEEEEC-CCCcCeEEEccC-CCEEEEEEcCCCCeEEEEEC
Confidence            7899998865554331         3579999999987 4455543 235789999999 55 777777 5999999999


Q ss_pred             CCCC
Q 021121          311 GMDP  314 (317)
Q Consensus       311 ~~~~  314 (317)
                      .+.+
T Consensus       401 ~t~k  404 (426)
T 3c75_H          401 ATGE  404 (426)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            7754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.62  E-value=3.8e-12  Score=103.41  Aligned_cols=226  Identities=12%  Similarity=0.052  Sum_probs=145.0

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      ..+..|+|+ .+.++.+...      ++.|..|+.....  .   ..+.....+.+++|+|++ .+++ ++.+ .|.+||
T Consensus        51 ~egp~~~~~-~~~l~~~d~~------~~~i~~~d~~~~~--~---~~~~~~~~v~~i~~~~dg-~l~v-~~~~-gl~~~d  115 (326)
T 2ghs_A           51 GEGPTFDPA-SGTAWWFNIL------ERELHELHLASGR--K---TVHALPFMGSALAKISDS-KQLI-ASDD-GLFLRD  115 (326)
T ss_dssp             EEEEEEETT-TTEEEEEEGG------GTEEEEEETTTTE--E---EEEECSSCEEEEEEEETT-EEEE-EETT-EEEEEE
T ss_pred             CcCCeEeCC-CCEEEEEECC------CCEEEEEECCCCc--E---EEEECCCcceEEEEeCCC-eEEE-EECC-CEEEEE
Confidence            457899995 3555555543      7899999987643  2   222345679999999997 3554 4444 488999


Q ss_pred             eCCCCCCCCceeec--cCCcceEEEEEecCCCCEEEEEcC------CCEEEEEEcCCCceeEEeeccccceEEEEEecCC
Q 021121           90 TALPPTANPIRSLH--EHTREVHSADYNPTRRDSFITSSW------DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        90 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (317)
                      ...++ ...+....  .....+.+++++|+|. ++++...      .+.|..++  +++. ..+.........++|+|+ 
T Consensus       116 ~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~d-  189 (326)
T 2ghs_A          116 TATGV-LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPD-  189 (326)
T ss_dssp             TTTCC-EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTT-
T ss_pred             CCCCc-EEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCC-
Confidence            76541 11111111  1124688999999997 5554432      25666666  4443 333333345789999999 


Q ss_pred             CCe-EEEEeCCCeEEEEeCC--CC-Cc-----eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE
Q 021121          162 SDV-FCSASGDCTLRIWDVR--EM-GS-----TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       162 ~~~-l~~~~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      ++. +++.+.++.|.+||+.  ++ +.     ...+......+..+++++ +++++++...++.|.+||.. ++ .+..+
T Consensus       190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~-~~~~i  266 (326)
T 2ghs_A          190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GN-HIARY  266 (326)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CC-EEEEE
T ss_pred             CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-CC-EEEEE
Confidence            554 4555667899999986  44 22     112222334567899998 88887777667889999983 34 35566


Q ss_pred             ecCCCceeEEEec-CCCCeeEEeeecCC
Q 021121          233 NGHGYAVRKVKFS-PHRRNLLASCSYDM  259 (317)
Q Consensus       233 ~~~~~~v~~~~~~-~~~~~~l~~~~~d~  259 (317)
                      ..+...+++++|+ |+++.++++...++
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            6666679999998 88875555554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.61  E-value=4.9e-12  Score=102.77  Aligned_cols=224  Identities=7%  Similarity=-0.072  Sum_probs=146.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV  142 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  142 (317)
                      .....|+|+++.++++...++.|..|+...+   + ...+. ....+.++.|++++. ++++ +.+ .|.+||.++++..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~-~~~~~-~~~~v~~i~~~~dg~-l~v~-~~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG---R-KTVHA-LPFMGSALAKISDSK-QLIA-SDD-GLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT---E-EEEEE-CSSCEEEEEEEETTE-EEEE-ETT-EEEEEETTTCCEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC---c-EEEEE-CCCcceEEEEeCCCe-EEEE-ECC-CEEEEECCCCcEE
Confidence            4678899986667777777899999998654   2 22222 346799999999987 5554 334 5999999887654


Q ss_pred             EEeec----cccceEEEEEecCCCCeEEEEeC------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-EEE
Q 021121          143 RTFKE----HAYCVYNATWNPRHSDVFCSASG------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-ASA  211 (317)
Q Consensus       143 ~~~~~----~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~  211 (317)
                      .....    ....+..++++|+ ++++++...      .+.|..++  +++. ..+.........++|+| +++.+ ++.
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~-dg~~lyv~~  197 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSP-DGTTGYFVD  197 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECT-TSCEEEEEE
T ss_pred             EEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcC-CCCEEEEEE
Confidence            33221    1246899999998 676655432      25566666  3432 33322333567899999 77655 444


Q ss_pred             ecCCcEEEEEcc--CC-Cc----cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeE
Q 021121          212 SVDKSIKIWDVR--NY-RV----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV  284 (317)
Q Consensus       212 ~~d~~i~v~d~~--~~-~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~  284 (317)
                      +.++.|.+||+.  ++ ..    ....+.........++++++|. +.++...++.|.+||. +++ ....+..+...++
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~-~~~~i~~~~~~~~  274 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGN-HIARYEVPGKQTT  274 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCC-EEEEEECSCSBEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCC-EEEEEECCCCCcE
Confidence            557899999985  43 21    1122222345678899999997 5665556688999998 444 4455666666799


Q ss_pred             eEEEE-eccCCeEEEeecC
Q 021121          285 GVDMS-VLVEGLLASTGWD  302 (317)
Q Consensus       285 ~~~~~-~~~~~~l~s~~~d  302 (317)
                      +++|+ ++++.++++...+
T Consensus       275 ~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          275 CPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEESTTSCEEEEEEBCT
T ss_pred             EEEEecCCCCEEEEEecCC
Confidence            99998 7733344554444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=8.6e-13  Score=108.04  Aligned_cols=244  Identities=6%  Similarity=-0.019  Sum_probs=155.2

Q ss_pred             ceeeeeecCCCCeeEEEecCCCCCeEEEEE--cCCeEEEEEeCCCCCCCCc----eeeccCCcceEEEEEecCCCCEEEE
Q 021121           51 LTELVAFDTADGVYDLAWSESHDSLLIAAV--ADGSVKIYDTALPPTANPI----RSLHEHTREVHSADYNPTRRDSFIT  124 (317)
Q Consensus        51 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~  124 (317)
                      ++.+..+.  ..+..++++|++ +++++..  .++.++||.+..+ ...+.    .....+-..+..+++++++. ++++
T Consensus         9 ~~~v~~~~--~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~   83 (343)
T 2qe8_A            9 LEVVAELS--LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWML   83 (343)
T ss_dssp             CEEEEEES--SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEE
T ss_pred             eEEEEEcC--CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCc-EEEE
Confidence            34444333  578999999998 5777653  2343666666522 11100    11123556899999999986 5554


Q ss_pred             EcC-----CCEEEEEEcCCCceeEEeecc------ccceEEEEEecCCCCeEEEEe---CCCeEEEEeCCCCCceeeecc
Q 021121          125 SSW-----DDTVKLWTVDRPTSVRTFKEH------AYCVYNATWNPRHSDVFCSAS---GDCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       125 ~~~-----dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~  190 (317)
                      -..     ++.|.+||+.+++.+..+...      ...+..++++++++.++++..   .++.|.+||+.+++..+.+..
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            433     579999999998877666432      235689999987455556655   678999999987765554422


Q ss_pred             C-----------------------------ccceEEEEecCCCCcEEEEEecCC-cEEEEEccCCCc----------cEE
Q 021121          191 H-----------------------------EFEILACDWNKYDDCLIASASVDK-SIKIWDVRNYRV----------PIA  230 (317)
Q Consensus       191 ~-----------------------------~~~v~~i~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~----------~~~  230 (317)
                      |                             ...+..++++| +++.|+.+...+ .+..++......          .+.
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE  242 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred             CCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence            1                             02357899999 888777776555 565555431100          011


Q ss_pred             EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-cccceeEeEEEEeccCCeEEEeecCCc
Q 021121          231 VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDEL  304 (317)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~  304 (317)
                       ..++......++++++|. ++++...++.|.+||..+++ ...... .+.....+++|.++ +.++++.+..+.
T Consensus       243 -~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~~  313 (343)
T 2qe8_A          243 -RYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLHH  313 (343)
T ss_dssp             -EEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTT-SCEEEEECCGGG
T ss_pred             -ecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCC-CcEEEEeCcccc
Confidence             113334567899999987 78888888999999984444 222222 22456889999987 677777664433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=4.7e-12  Score=101.92  Aligned_cols=228  Identities=11%  Similarity=0.016  Sum_probs=151.3

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ..........|+|+++.+++++..++.|..|+.. +    ....+..+...+..++++++|+ ++++...++.|.+|+.+
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g----~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G----TVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S----CEEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C----CEEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC
Confidence            3445677899999986577888788999999863 2    2344445667789999999987 66666667899999986


Q ss_pred             CCceeEEeecc----ccceEEEEEecCCCCeEEE----EeC-------------CCeEEEEeCCCCCceeeeccCccceE
Q 021121          138 RPTSVRTFKEH----AYCVYNATWNPRHSDVFCS----ASG-------------DCTLRIWDVREMGSTMIIPAHEFEIL  196 (317)
Q Consensus       138 ~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~v~  196 (317)
                       ++........    ...+..+++.|+ +++.++    |..             .+.|..+|..+++.....  ......
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence             5432222111    124678999998 777775    332             356888888766554433  334567


Q ss_pred             EEEecCCCCcEEEEEecC------CcEEEEEccCCCcc-EEE-EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          197 ACDWNKYDDCLIASASVD------KSIKIWDVRNYRVP-IAV-LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       197 ~i~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .++|+| +++.|+.+...      +.|.+||+...... ... ..........++++++|. +.++ ..+ .|.+|+.. 
T Consensus       192 gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~-gv~~~~~~-  266 (305)
T 3dr2_A          192 GLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGT-GVCVFDSD-  266 (305)
T ss_dssp             EEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSS-EEEEECTT-
T ss_pred             ceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCC-cEEEECCC-
Confidence            899999 88877666554      68999998754310 011 111234456899999998 4444 344 49999974 


Q ss_pred             ccceeeeeecccceeEeEEEEeccCCeEEEeecCC
Q 021121          269 EDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE  303 (317)
Q Consensus       269 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  303 (317)
                      ++ .+..+..+. .+..++|+++ ++.|..++.++
T Consensus       267 g~-~~~~~~~~~-~~~~~~f~~d-~~~L~it~~~~  298 (305)
T 3dr2_A          267 GQ-LLGHIPTPG-TASNCTFDQA-QQRLFITGGPC  298 (305)
T ss_dssp             SC-EEEEEECSS-CCCEEEECTT-SCEEEEEETTE
T ss_pred             CC-EEEEEECCC-ceeEEEEeCC-CCEEEEEcCCe
Confidence            33 444554444 5888999977 66666666554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=4e-11  Score=98.97  Aligned_cols=244  Identities=11%  Similarity=-0.027  Sum_probs=151.0

Q ss_pred             EEEEecCCCCeEEEEEeccccc----ccCceEEEEecCCCCCcceeeeee-----cCCCCeeEEEecCCCCCeEEEEEc-
Q 021121           12 SVKFSPFYESRLAVATAQNFGI----LGNGRVHVLDLSPAAPALTELVAF-----DTADGVYDLAWSESHDSLLIAAVA-   81 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~----~~~g~i~i~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~-   81 (317)
                      .++++|  +++.+.........    ..++.|.+||...... ...+..-     ........++|+|+|. +|+++.. 
T Consensus        70 ~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFA  145 (373)
T ss_pred             CeEECC--CCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccccCCCccceEECCCCC-EEEEEecC
Confidence            899999  45555554321000    0156899999975431 1111110     0112355899999995 6666653 


Q ss_pred             -CCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-----ccccc-eE
Q 021121           82 -DGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-----EHAYC-VY  153 (317)
Q Consensus        82 -dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~-v~  153 (317)
                       ++.|.++| .+.   +.... +.. ..   ++.+.|+++..+++.+.||.+.++|. +++......     ....+ ..
T Consensus       146 ~~~~v~viD-~t~---~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~  216 (373)
T 2mad_H          146 AGPAVGLVV-QGG---SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT  216 (373)
T ss_pred             CCCeEEEEE-CCC---CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceee
Confidence             57899999 765   44444 332 11   25566777667888889999999999 776663322     11112 13


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeecc----------CccceEEEEecCCCCcEEEEEec--------
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPA----------HEFEILACDWNKYDDCLIASASV--------  213 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~--------  213 (317)
                      ...+.++++.++++ +..+.+.+.|+.....  ...+..          .......+.++| +++.+.++..        
T Consensus       217 ~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~  294 (373)
T 2mad_H          217 QPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             cceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCccccc
Confidence            34566764444444 4678999999875532  122211          012234478888 6666666442        


Q ss_pred             --CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecccccce
Q 021121          214 --DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDAL  272 (317)
Q Consensus       214 --d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~  272 (317)
                        .+.|.++|..+.+. +..+.. ......++|+|+++.+++++. .++.|.++|+.+.+..
T Consensus       295 ~~~~~V~VID~~t~~v-v~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          295 AAAKEVTSVTGLVGQT-SSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCCeEEEEECCCCEE-EEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence              35799999988664 555543 335789999999985566665 5899999999998733

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.56  E-value=1.8e-11  Score=100.81  Aligned_cols=260  Identities=14%  Similarity=0.159  Sum_probs=163.1

Q ss_pred             CceEEEEecCCCCCcceeee-ee--cC-CCCeeEEEe-----------c--CCCCCeEEEEEcCCeEEEEEeCCC-CCCC
Q 021121           36 NGRVHVLDLSPAAPALTELV-AF--DT-ADGVYDLAW-----------S--ESHDSLLIAAVADGSVKIYDTALP-PTAN   97 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~-~~--~~-~~~v~~~~~-----------~--~~~~~~l~~~~~dg~i~v~~~~~~-~~~~   97 (317)
                      .-.|.+.|+++..+...++. ..  .. ......+.|           +  ++.+.+++.+..+++|.++|+.+. ...+
T Consensus        42 ~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~  121 (462)
T 2ece_A           42 ADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK  121 (462)
T ss_dssp             CCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE
T ss_pred             CCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCce
Confidence            34688889887554332222 11  11 113334444           6  777667777888899999998643 2223


Q ss_pred             Cceeec------c-CCcceEEEEEecCCCCEEEEEcCC------CEEEEEEcCCCceeEEeecccc---ceEEEEEecCC
Q 021121           98 PIRSLH------E-HTREVHSADYNPTRRDSFITSSWD------DTVKLWTVDRPTSVRTFKEHAY---CVYNATWNPRH  161 (317)
Q Consensus        98 ~~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~  161 (317)
                      ....++      . -...-..+...|++  +++++..+      |.|.++|.++.+.+.++.....   .-..+.|+|+ 
T Consensus       122 ~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~-  198 (462)
T 2ece_A          122 IIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLP-  198 (462)
T ss_dssp             EEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETT-
T ss_pred             eeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCC-
Confidence            333331      1 11244567888998  56666555      7899999999999988863322   2456888999 


Q ss_pred             CCeEEEEe-------------------CCCeEEEEeCCCCCceeeeccC--ccceEEEEe--cCCCCcEEEEEe------
Q 021121          162 SDVFCSAS-------------------GDCTLRIWDVREMGSTMIIPAH--EFEILACDW--NKYDDCLIASAS------  212 (317)
Q Consensus       162 ~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~--~~~~~~~l~~~~------  212 (317)
                      .+.+++..                   .+.+|.+||+.+++.+.++...  ......+.|  +| +++++.++.      
T Consensus       199 ~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~  277 (462)
T 2ece_A          199 NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKD  277 (462)
T ss_dssp             TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTT
T ss_pred             CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccC
Confidence            77777764                   3689999999988777776642  133455555  99 777766666      


Q ss_pred             cCCcEEEEEccCCCcc-EEE--EecC----------------CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc--c
Q 021121          213 VDKSIKIWDVRNYRVP-IAV--LNGH----------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--A  271 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~-~~~--~~~~----------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~  271 (317)
                      .+++|.+|....++.. .+.  +...                ......|.++|+++.+.++.-..+.|.+||+....  .
T Consensus       278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~  357 (462)
T 2ece_A          278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV  357 (462)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            4668887766542210 011  1100                23468899999999655655567899999986432  2


Q ss_pred             eeeeeeccc--------------ceeEeEEEEeccCCeEEEee
Q 021121          272 LVGRYDHHT--------------EFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       272 ~~~~~~~~~--------------~~v~~~~~~~~~~~~l~s~~  300 (317)
                      ++....-..              +.-..++++|+ +++|+++.
T Consensus       358 lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD-Gk~LyVaN  399 (462)
T 2ece_A          358 LTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD-GRRVYVTN  399 (462)
T ss_dssp             EEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT-SSEEEEEC
T ss_pred             EEEEEEeCCeeccccccccccCCCCCCEEEEcCC-CCEEEEEc
Confidence            222222110              13578999999 66666665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.55  E-value=6.1e-12  Score=102.83  Aligned_cols=262  Identities=11%  Similarity=0.063  Sum_probs=156.2

Q ss_pred             EEEEecCCCCeEEEEEecccc--c--ccCceEEEEecCCCCCcceeeeeecC------CCCeeEEEecCCCCCeEEEEEc
Q 021121           12 SVKFSPFYESRLAVATAQNFG--I--LGNGRVHVLDLSPAAPALTELVAFDT------ADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~--~--~~~g~i~i~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      .+.++|+  ++.+..++....  .  ..++.|.+||..+... ...+. ...      ......++|+|||. +++++..
T Consensus        82 ~va~spD--G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~~~I~-v~~g~r~~~g~~P~~~a~spDGk-~lyVan~  156 (386)
T 3sjl_D           82 NPVVADD--GSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIE-LPDAPRFLVGTYPWMTSLTPDGK-TLLFYQF  156 (386)
T ss_dssp             EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEE-ETTCCCCCBSCCGGGEEECTTSS-EEEEEEC
T ss_pred             cEEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCCeE-EEEEE-CCCccccccCCCCceEEEcCCCC-EEEEEEc
Confidence            3999995  443333321000  0  0156899999987652 22221 111      12466799999995 6666653


Q ss_pred             --CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-CceeEEeecc----ccce-E
Q 021121           82 --DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRTFKEH----AYCV-Y  153 (317)
Q Consensus        82 --dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~----~~~v-~  153 (317)
                        ++.|.++|+.+.   +.+..+... +   +....|.+...+++.+.||.+.+.++.+ ++.......+    ..++ .
T Consensus       157 ~~~~~VsVID~~t~---~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~  229 (386)
T 3sjl_D          157 SPAPAVGVVDLEGK---AFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN  229 (386)
T ss_dssp             SSSCEEEEEETTTT---EEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCS
T ss_pred             CCCCeEEEEECCCC---cEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccc
Confidence              689999999876   555555321 1   1223455555778888899999999876 5543221111    1122 1


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeec---------c-CccceEEEEecCCCCcEEEEEec--------
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIP---------A-HEFEILACDWNKYDDCLIASASV--------  213 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~---------~-~~~~v~~i~~~~~~~~~l~~~~~--------  213 (317)
                      ...|.+.++++++ .+.+|.|++.|+.+...  ...+.         + .......++++| +++.++....        
T Consensus       230 ~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk  307 (386)
T 3sjl_D          230 HPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHK  307 (386)
T ss_dssp             CCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTT
T ss_pred             cceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccC
Confidence            2356533255444 56689999999976542  22221         0 012334577788 6666555432        


Q ss_pred             --CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEe-eecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121          214 --DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS-CSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       214 --d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                        .+.|.++|+.+.+. +..+.. ...+.+|+++|+++.+|++ ...++.|.++|..+++ .+..+..- +.-+.|.+++
T Consensus       308 ~~~~~V~viD~~t~kv-~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k-~~~~i~~~-~~p~~l~~s~  383 (386)
T 3sjl_D          308 TASRFVVVLDAKTGER-LAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQL-GHGPQVITTA  383 (386)
T ss_dssp             SCEEEEEEEETTTCCE-EEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCC-CSSCCEEEEC
T ss_pred             CCCCEEEEEECCCCeE-EEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc-EEEEecCC-CCCceeEECC
Confidence              25799999999775 444432 2368899999999744555 4558999999999987 44555432 3345566666


Q ss_pred             c
Q 021121          291 L  291 (317)
Q Consensus       291 ~  291 (317)
                      |
T Consensus       384 d  384 (386)
T 3sjl_D          384 D  384 (386)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.55  E-value=3.3e-12  Score=114.35  Aligned_cols=248  Identities=11%  Similarity=0.049  Sum_probs=151.2

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC----
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG----   83 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----   83 (317)
                      ..+..++|||+ ..+++.+....  ......|++||+.++..  .....  .......++|+ |++ .|+.++.+.    
T Consensus       129 ~~l~~~~~SpD-g~~lAy~~~~~--G~~~~~i~v~dl~tg~~--~~~~~--~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~  199 (693)
T 3iuj_A          129 TALDQLSFSRD-GRILAYSLSLA--GSDWREIHLMDVESKQP--LETPL--KDVKFSGISWL-GNE-GFFYSSYDKPDGS  199 (693)
T ss_dssp             CEEEEEEECTT-SSEEEEEEECS--SCCEEEEEEEETTTCSE--EEEEE--EEEESCCCEEE-TTT-EEEEEESSCCC--
T ss_pred             EEEEEEEECCC-CCEEEEEEecC--CCceEEEEEEECCCCCC--Ccccc--CCceeccEEEe-CCC-EEEEEEecCcccc
Confidence            35778899994 33444444320  00125799999988762  11111  11113567899 984 666666663    


Q ss_pred             ---------eEEEEEeCCCCCC-CCceeecc-CCcceEEEEEecCCCCEEEEEcC---CCEEEEEEcCCCc-eeEEeecc
Q 021121           84 ---------SVKIYDTALPPTA-NPIRSLHE-HTREVHSADYNPTRRDSFITSSW---DDTVKLWTVDRPT-SVRTFKEH  148 (317)
Q Consensus        84 ---------~i~v~~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~-~~~~~~~~  148 (317)
                               .|.+|++.++... ..+..... |......+.|+|+++.++++.+.   +..|+++|+.++. ....+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     3888988754211 12222223 44557889999999844444432   3589999998764 44555555


Q ss_pred             ccceEEEEEecCCCCeEEEEeCC---CeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEec-CC--cEEEE
Q 021121          149 AYCVYNATWNPRHSDVFCSASGD---CTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASV-DK--SIKIW  220 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~  220 (317)
                      ....... ++++++.+++....+   +.|..+|+.++..  ...+..+...+.  .|++ +++.|+.... ++  .|++|
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEEECCeeEEEEE
Confidence            5555554 666645555555543   6799999987654  244555555554  7888 6666655544 44  68899


Q ss_pred             EccCCCccEEEEe-cCCCceeEEEecCCCCeeEEeeecC---CeEEEEeccccc
Q 021121          221 DVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYD---MTVCLWDFMVED  270 (317)
Q Consensus       221 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~vwd~~~~~  270 (317)
                      |+....  ...+. .....+..+.++|+++.++++.+..   +.+..||+.+++
T Consensus       356 d~~g~~--~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          356 DYEGKR--VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CTTSCE--EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ECCCCe--eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            887532  33332 3445677888888888655544422   789999987765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=4.7e-12  Score=113.34  Aligned_cols=243  Identities=13%  Similarity=0.073  Sum_probs=150.5

Q ss_pred             CCCCeeEEEecCCCCCeEEE-EEcC----CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC----
Q 021121           59 TADGVYDLAWSESHDSLLIA-AVAD----GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD----  129 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~-~~~d----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----  129 (317)
                      +...+..++|||||. +||. .+..    ..|++||+.++   +.+.. ..+......++|+ |++ .|+.++.+.    
T Consensus       127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg---~~~~~-~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~  199 (693)
T 3iuj_A          127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESK---QPLET-PLKDVKFSGISWL-GNE-GFFYSSYDKPDGS  199 (693)
T ss_dssp             SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTC---SEEEE-EEEEEESCCCEEE-TTT-EEEEEESSCCC--
T ss_pred             CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCC---CCCcc-ccCCceeccEEEe-CCC-EEEEEEecCcccc
Confidence            334688899999995 5553 3333    46999999876   32221 1111113567899 988 666666553    


Q ss_pred             ---------EEEEEEcCCCce--eEEee--c-cccceEEEEEecCCCCeE-EEEeC---CCeEEEEeCCCCC-ceeeecc
Q 021121          130 ---------TVKLWTVDRPTS--VRTFK--E-HAYCVYNATWNPRHSDVF-CSASG---DCTLRIWDVREMG-STMIIPA  190 (317)
Q Consensus       130 ---------~v~iwd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~~l-~~~~~---dg~i~i~d~~~~~-~~~~~~~  190 (317)
                               .|++|++.+++.  ...+.  . +......+.|+|+ ++.+ ++.+.   ...|+++|+.++. ....+..
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                     499999987653  22232  2 3345788999999 5554 44432   3589999998764 3445554


Q ss_pred             CccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCCeeEEeeecCC--eEEEE
Q 021121          191 HEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM--TVCLW  264 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~vw  264 (317)
                      +....... +++..+.+++....+   +.|..+|+.+... ....+..|...+.  .|+++++.++++...++  .|++|
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            55544444 555245555555443   5799999987542 1345555665554  89999986666666665  58888


Q ss_pred             ecccccceeeeeecccceeEeEEEEeccCCeEEEeec---CCcEEEEecCCC
Q 021121          265 DFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW---DELVYVWQQGMD  313 (317)
Q Consensus       265 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~  313 (317)
                      |+..+. .........+.+..+.++++++.++++.+.   -+.++.||+...
T Consensus       356 d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          356 DYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             CTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             ECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            887543 222222344567788888884445544432   278999988654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.54  E-value=7.9e-13  Score=108.14  Aligned_cols=269  Identities=11%  Similarity=-0.027  Sum_probs=163.9

Q ss_pred             EEecCCCCeEEEEEecccccccCc----eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE---------
Q 021121           14 KFSPFYESRLAVATAQNFGILGNG----RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV---------   80 (317)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------   80 (317)
                      ...|....++.++...      ++    +|.++|..+.+    .+..+.....- .+.++|++. .++++.         
T Consensus        25 ~~~~~~~~~~yV~~~~------~~~~~d~vsvID~~t~~----v~~~i~vG~~P-~i~~spDg~-~lyVan~~~~r~~~G   92 (368)
T 1mda_H           25 HGPGAISRRSHITLPA------YFAGTTENWVSCAGCGV----TLGHSLGAFLS-LAVAGHSGS-DFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCCTTEEEEEECT------TTCSSEEEEEEETTTTE----EEEEEEECTTC-EEEECTTSS-CEEEEEEEETTTTSS
T ss_pred             cCCCCCCCeEEEECCc------cCCccceEEEEECCCCe----EEEEEeCCCCC-ceEECCCCC-EEEEEcccccccccC
Confidence            3443334555555543      33    88899988764    22223222222 799999995 555554         


Q ss_pred             -cCCeEEEEEeCCCCCCCCceeeccC-------CcceEEEEEecCCCCEEEEEcC--CCEEEE--EEcCCCceeEEeecc
Q 021121           81 -ADGSVKIYDTALPPTANPIRSLHEH-------TREVHSADYNPTRRDSFITSSW--DDTVKL--WTVDRPTSVRTFKEH  148 (317)
Q Consensus        81 -~dg~i~v~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~--dg~v~i--wd~~~~~~~~~~~~~  148 (317)
                       .++.|.+||..+.   +.+..+...       ......+.++|+|+ +++++..  +..|.+  +|+.+   +..+...
T Consensus        93 ~~~~~VsviD~~T~---~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           93 KRTDYVEVFDPVTF---LPIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SEEEEEEEECTTTC---CEEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCEEEEEECCCC---CEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence             3688999999876   555554322       12355789999999 5665543  467888  99877   4444321


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC-----CCcee----eeccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE-----MGSTM----IIPAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~----~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                       +.   ....|++...+++.+.||.+.+.|+.+     ++...    .+.....+.   . .+ ++..++..+. +.+.+
T Consensus       166 -~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~v  235 (368)
T 1mda_H          166 -SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQ  235 (368)
T ss_dssp             -SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEE
T ss_pred             -Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEE
Confidence             11   223455566677778899988888876     32221    111122333   3 55 4445555555 89999


Q ss_pred             EEccCCCccE-EEEec-------C---CCceeEEEecCCCCeeEEeee---c-----CCeEEEEecccccceeeeeeccc
Q 021121          220 WDVRNYRVPI-AVLNG-------H---GYAVRKVKFSPHRRNLLASCS---Y-----DMTVCLWDFMVEDALVGRYDHHT  280 (317)
Q Consensus       220 ~d~~~~~~~~-~~~~~-------~---~~~v~~~~~~~~~~~~l~~~~---~-----d~~i~vwd~~~~~~~~~~~~~~~  280 (317)
                      .|.......+ ..+.-       +   ......++++|++++++++..   .     ++.+.++|+.+.+ .+..+....
T Consensus       236 iD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-vv~~i~vg~  314 (368)
T 1mda_H          236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPISNGH  314 (368)
T ss_dssp             EECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCEEEE
T ss_pred             EECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-EEEEEECCC
Confidence            9986533211 11110       1   111223789999996555433   1     2356699999987 445554333


Q ss_pred             ceeEeEEEEeccCCeEEEee-cCCcEEEEecCCC
Q 021121          281 EFAVGVDMSVLVEGLLASTG-WDELVYVWQQGMD  313 (317)
Q Consensus       281 ~~v~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~  313 (317)
                       ...+|+|+|++..++++.. .++.|.++|+.+.
T Consensus       315 -~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          315 -DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             -EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             -CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence             5889999999444777777 5999999999774

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.49  E-value=6.1e-10  Score=87.69  Aligned_cols=247  Identities=11%  Similarity=0.078  Sum_probs=151.7

Q ss_pred             CceEEEEecCCCCCcc---eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEE
Q 021121           36 NGRVHVLDLSPAAPAL---TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSA  112 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~  112 (317)
                      .+.|+.++++......   ..+.. .....+..++|++++..++++-..++.|..++....   ...............+
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~p~~i   84 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---EPTTIIRQDLGSPEGI   84 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---CCEEEECTTCCCEEEE
T ss_pred             CCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC---CcEEEEECCCCCccEE
Confidence            3488999987654211   11111 112357899999976556666666789999998643   2222222223567899


Q ss_pred             EEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC--CCeEEEEeCCCCCceeeecc
Q 021121          113 DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG--DCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~  190 (317)
                      ++.+++..++++-...+.|.+++++.................++++|+++.++++...  .+.|..+++...........
T Consensus        85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~  164 (267)
T 1npe_A           85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC
Confidence            9999766466666677899999987543322222222467899999974555555433  46888888764332222222


Q ss_pred             CccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          191 HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .-.....++++|..+.++++-...+.|.++|...... ...... ......++..  +.+++++....+.|..+|..+++
T Consensus       165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence            2345788999993345556666678999999875332 222332 2234567664  44456655567899999988776


Q ss_pred             ceeeeeeccc-ceeEeEEEEec
Q 021121          271 ALVGRYDHHT-EFAVGVDMSVL  291 (317)
Q Consensus       271 ~~~~~~~~~~-~~v~~~~~~~~  291 (317)
                       ....+.... ....++++.|+
T Consensus       241 -~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          241 -EMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             -EEEEECCSSCCCCCCEEEECS
T ss_pred             -ceEEEccccccccceeeecCc
Confidence             334443322 24678888886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=5.3e-11  Score=95.72  Aligned_cols=224  Identities=10%  Similarity=0.024  Sum_probs=140.4

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIY   88 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~   88 (317)
                      ......|+|+ .+.++.+...      ++.|..|+.. ..  .....  .....+..+++.++| +++++...++.|.+|
T Consensus        46 ~~egp~~~~~-g~~l~~~d~~------~~~i~~~~~~-g~--~~~~~--~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           46 WSEGPAWWEA-QRTLVWSDLV------GRRVLGWRED-GT--VDVLL--DATAFTNGNAVDAQQ-RLVHCEHGRRAITRS  112 (305)
T ss_dssp             SEEEEEEEGG-GTEEEEEETT------TTEEEEEETT-SC--EEEEE--ESCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             CccCCeEeCC-CCEEEEEECC------CCEEEEEeCC-CC--EEEEe--CCCCccceeeECCCC-CEEEEECCCCEEEEE
Confidence            4567899994 2335555543      7899999873 22  22222  355678999999998 465555455789999


Q ss_pred             EeCCCCCCCCce-eecc-CCcceEEEEEecCCCCEEEE----EcC-------------CCEEEEEEcCCCceeEEeeccc
Q 021121           89 DTALPPTANPIR-SLHE-HTREVHSADYNPTRRDSFIT----SSW-------------DDTVKLWTVDRPTSVRTFKEHA  149 (317)
Q Consensus        89 ~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~v~iwd~~~~~~~~~~~~~~  149 (317)
                      +.+ + ....+. .... ....+..+++.++|. ++++    |..             .+.|..+|..+++.....  ..
T Consensus       113 ~~~-g-~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          113 DAD-G-QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             CTT-S-CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             CCC-C-CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            864 2 111111 1111 123467899999997 6665    332             357888888766654433  34


Q ss_pred             cceEEEEEecCCCCeEEEEeCC------CeEEEEeCCCCCcee---ee-ccCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          150 YCVYNATWNPRHSDVFCSASGD------CTLRIWDVREMGSTM---II-PAHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~---~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      .....++|+|+ ++.++.+...      +.|.+||+.... +.   .+ .........+++++ ++++.++ ..+ .|.+
T Consensus       188 ~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~-~~~-gv~~  262 (305)
T 3dr2_A          188 DHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDR-GGWLWSS-SGT-GVCV  262 (305)
T ss_dssp             SSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECT-TSCEEEC-CSS-EEEE
T ss_pred             CCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECC-CCCEEEe-cCC-cEEE
Confidence            55788999999 6666565554      789999987543 21   11 11223345788898 8885554 444 4999


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      ||... + .+..+..+. .+.+++|+|+++. |+.++.++
T Consensus       263 ~~~~g-~-~~~~~~~~~-~~~~~~f~~d~~~-L~it~~~~  298 (305)
T 3dr2_A          263 FDSDG-Q-LLGHIPTPG-TASNCTFDQAQQR-LFITGGPC  298 (305)
T ss_dssp             ECTTS-C-EEEEEECSS-CCCEEEECTTSCE-EEEEETTE
T ss_pred             ECCCC-C-EEEEEECCC-ceeEEEEeCCCCE-EEEEcCCe
Confidence            99843 3 355555444 5889999998885 55555554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=1.4e-11  Score=100.74  Aligned_cols=242  Identities=10%  Similarity=0.041  Sum_probs=148.8

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee-----eecCCCCeeEEEecCCCCCeEEEEEc-
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-----AFDTADGVYDLAWSESHDSLLIAAVA-   81 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~-   81 (317)
                      ..+..++++|  +++++++....    .++.++||.+.. . .+....     ...+-..+..+++.+++ +++++-.. 
T Consensus        17 ~~p~~va~~~--~g~~~v~~~~~----~~~~~~l~~~~~-g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~   87 (343)
T 2qe8_A           17 LAPGNITLTP--DGRLFLSLHQF----YQPEMQVAELTQ-D-GLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGN   87 (343)
T ss_dssp             SCEEEEEECT--TSCEEEEECGG----GCCSCSEEEEET-T-EEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHH
T ss_pred             CCcceEEECC--CCCEEEEeCCC----CCCceEEEEECC-C-CeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCC
Confidence            4678999999  67777775321    033355665542 2 122111     01234578999999987 45555433 


Q ss_pred             ----CCeEEEEEeCCCCCCCCceeec------cCCcceEEEEEecCCCCEEEEEc---CCCEEEEEEcCCCceeEEeecc
Q 021121           82 ----DGSVKIYDTALPPTANPIRSLH------EHTREVHSADYNPTRRDSFITSS---WDDTVKLWTVDRPTSVRTFKEH  148 (317)
Q Consensus        82 ----dg~i~v~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~  148 (317)
                          ++.|.+||+.++   +.+..+.      .+......+++++++...+++..   .++.|.+||+.+++..+.+..|
T Consensus        88 ~~~~~~~i~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~  164 (343)
T 2qe8_A           88 QSKSVPKLVAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY  164 (343)
T ss_dssp             HHTSCCEEEEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred             CcCCCCeEEEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence                578999998765   3333322      12345688999987553555555   6789999999887765554321


Q ss_pred             -----------------------------ccceEEEEEecCCCCeEEEEeCCC-eEEEEeCC---CCCc-----ee--ee
Q 021121          149 -----------------------------AYCVYNATWNPRHSDVFCSASGDC-TLRIWDVR---EMGS-----TM--II  188 (317)
Q Consensus       149 -----------------------------~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~~-----~~--~~  188 (317)
                                                   ...+..++|+|+ ++.|+.+...+ .+..++..   .+..     ..  ..
T Consensus       165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  243 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER  243 (343)
T ss_dssp             TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred             CcccccccceeECCEEEEeccCCCceeceecccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence                                         023688999998 67666666555 56555532   1110     00  11


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-cCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      .++......+++++ +++++++...++.|.+||..+++. ..... .+...+.+++|.+++. ++++.+..+.+.+|.
T Consensus       244 ~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          244 YSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGY-LYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSC-EEEEECCGGGSGGGB
T ss_pred             cccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCc-EEEEeCccccccccc
Confidence            12233456799999 899999988899999999844432 22222 2245688999999887 666665444444343

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.43  E-value=2.3e-10  Score=101.76  Aligned_cols=195  Identities=10%  Similarity=0.017  Sum_probs=130.2

Q ss_pred             EEEEecCCCCEEEEEcCCC-------------------EEEEEEcCCCceeEEeeccc---------cceEEEEEecCCC
Q 021121          111 SADYNPTRRDSFITSSWDD-------------------TVKLWTVDRPTSVRTFKEHA---------YCVYNATWNPRHS  162 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~  162 (317)
                      .++++|++. .++.+..++                   .|..+|.++++.+..++...         ....-+....+ +
T Consensus       247 ~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d-G  324 (677)
T 1kb0_A          247 SMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA-G  324 (677)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET-T
T ss_pred             ceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC-C
Confidence            567888877 777777664                   59999999999888776321         12223333334 4


Q ss_pred             ---CeEEEEeCCCeEEEEeCCCCCceeeeccCc-----------cce------------------------EEEEecCCC
Q 021121          163 ---DVFCSASGDCTLRIWDVREMGSTMIIPAHE-----------FEI------------------------LACDWNKYD  204 (317)
Q Consensus       163 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~v------------------------~~i~~~~~~  204 (317)
                         ..++.++.+|.++++|.++++.+..+....           .++                        ..++++| +
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~  403 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-Q  403 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-T
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-C
Confidence               678899999999999999998876554211           011                        1467888 6


Q ss_pred             CcEEEEEec-------------------------------------------CCcEEEEEccCCCccEEEEecCCCceeE
Q 021121          205 DCLIASASV-------------------------------------------DKSIKIWDVRNYRVPIAVLNGHGYAVRK  241 (317)
Q Consensus       205 ~~~l~~~~~-------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~v~~  241 (317)
                      ..++++...                                           .+.|..||+.+++. +.... +..++..
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~-~~~~~~~  481 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVE-HVSPWNG  481 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEE-ESSSCCC
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecC-CCCCCcC
Confidence            666666432                                           27899999998774 44443 3334555


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec----------------CCcE
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW----------------DELV  305 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----------------dg~i  305 (317)
                      ..+...+. +++.++.||.+++||.++++.+.....++.....-+.+.+++..+++..+.                .+.+
T Consensus       482 g~~~~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l  560 (677)
T 1kb0_A          482 GTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTV  560 (677)
T ss_dssp             CEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEE
T ss_pred             cceEeCCC-EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeE
Confidence            55666776 677889999999999999985443333443334456677774445554322                4678


Q ss_pred             EEEecC
Q 021121          306 YVWQQG  311 (317)
Q Consensus       306 ~~w~~~  311 (317)
                      ..|.+.
T Consensus       561 ~~f~l~  566 (677)
T 1kb0_A          561 YTFVVG  566 (677)
T ss_dssp             EEEEET
T ss_pred             EEEecc
Confidence            888886

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=6.4e-11  Score=98.52  Aligned_cols=249  Identities=13%  Similarity=0.040  Sum_probs=150.8

Q ss_pred             EEEEecCCCCeEEEEEec-ccc--cccCceEEEEecCCCCCcceeeeeec------CCCCeeEEEecCCCCCeEEEEEc-
Q 021121           12 SVKFSPFYESRLAVATAQ-NFG--ILGNGRVHVLDLSPAAPALTELVAFD------TADGVYDLAWSESHDSLLIAAVA-   81 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~-~~~--~~~~g~i~i~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~-   81 (317)
                      .+.++|++ ..+.++... ...  ...++.|.++|..+... ...+. ..      .......+.|+||+. +++++.. 
T Consensus       122 gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-v~~I~-v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~  197 (426)
T 3c75_H          122 HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLP-IADIE-LPDAPRFLVGTYQWMNALTPDNK-NLLFYQFS  197 (426)
T ss_dssp             EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEE-ETTCCCCCBSCCGGGSEECTTSS-EEEEEECS
T ss_pred             ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcE-EEEEE-CCCccccccCCCcceEEEcCCCC-EEEEEecC
Confidence            79999953 333333310 000  00156899999987652 22222 11      123456799999994 6666653 


Q ss_pred             -CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE----eeccccce-EEE
Q 021121           82 -DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT----FKEHAYCV-YNA  155 (317)
Q Consensus        82 -dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v-~~~  155 (317)
                       ++.|.+.|+.+.   +.+..+..-.    +....|++...+++.+.||.+.+.+..+++....    +.....++ ..+
T Consensus       198 ~~~~VsVID~~t~---kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~  270 (426)
T 3c75_H          198 PAPAVGVVDLEGK---TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHP  270 (426)
T ss_dssp             SSCEEEEEETTTT---EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCC
T ss_pred             CCCeEEEEECCCC---eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEe
Confidence             578999999876   4444444211    1344555555777788889988888865554422    11111111 235


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCCcee--eecc----------CccceEEEEecCCCCcEEEEEec----------
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTM--IIPA----------HEFEILACDWNKYDDCLIASASV----------  213 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~----------~~~~v~~i~~~~~~~~~l~~~~~----------  213 (317)
                      .+.++ +..++..+..+.+.+.|+.......  .+..          .......++++| +++.+++...          
T Consensus       271 ~~~~d-g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~  348 (426)
T 3c75_H          271 AFSLR-SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAA  348 (426)
T ss_dssp             EECTT-TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSC
T ss_pred             eecCC-CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCC
Confidence            67888 5555556678999999986543211  1110          011122368898 6655555432          


Q ss_pred             CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeee
Q 021121          214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~  276 (317)
                      ++.|.++|..+.+. +..+... .....++|+|+++.++++.. .++.|.++|+.+.+ .+..+
T Consensus       349 s~~VsVID~~T~kv-v~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k-vv~tI  409 (426)
T 3c75_H          349 SRFVVVLNAETGER-INKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE-ELRSV  409 (426)
T ss_dssp             EEEEEEEETTTCCE-EEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC-EEEEE
T ss_pred             CCEEEEEECCCCeE-EEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC-EEEEe
Confidence            35799999999774 5555432 25789999999983455555 69999999999987 44454

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.42  E-value=1.8e-10  Score=102.71  Aligned_cols=252  Identities=13%  Similarity=0.068  Sum_probs=151.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecC---CCCCeEEEEE------cCCeEEEEEeCCCCCCCCceeecc--
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE---SHDSLLIAAV------ADGSVKIYDTALPPTANPIRSLHE--  104 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~------~dg~i~v~~~~~~~~~~~~~~~~~--  104 (317)
                      +|.|+.+|..+++......... .......+..+|   ++  .++++.      .+|.|..||..++   +.+..+..  
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~  203 (689)
T 1yiq_A          130 DGRLEAIDAKTGQRAWSVDTRA-DHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETG---KEAWRFYTVP  203 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS-CTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTC---CEEEEEESSC
T ss_pred             CCEEEEEECCCCCEeeeecCcC-CCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCC---cEEEEecccC
Confidence            8899999998776322211100 111111111222   33  444443      2688999998877   33322211  


Q ss_pred             -----------------------------CCcceEEEEEecCCCCEEEEEcCCCE-------------------EEEEEc
Q 021121          105 -----------------------------HTREVHSADYNPTRRDSFITSSWDDT-------------------VKLWTV  136 (317)
Q Consensus       105 -----------------------------~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------v~iwd~  136 (317)
                                                   +......+++.|+.. +++.+..++.                   |..+|.
T Consensus       204 ~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~  282 (689)
T 1yiq_A          204 GDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA  282 (689)
T ss_dssp             CCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET
T ss_pred             CCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc
Confidence                                         001112577888876 8888887764                   999999


Q ss_pred             CCCceeEEeeccc---------cceEEEEEecCCCC---eEEEEeCCCeEEEEeCCCCCceeeeccCc------------
Q 021121          137 DRPTSVRTFKEHA---------YCVYNATWNPRHSD---VFCSASGDCTLRIWDVREMGSTMIIPAHE------------  192 (317)
Q Consensus       137 ~~~~~~~~~~~~~---------~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------  192 (317)
                      ++++.+..++...         .++.......+ +.   .++.++.+|.++++|.++++.+.......            
T Consensus       283 ~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~  361 (689)
T 1yiq_A          283 DTGEYVWHYQTTPGDAWDYTATQHMILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTG  361 (689)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTT
T ss_pred             cCCceeEeeecCCcccccccCCCCcEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCC
Confidence            9999988776421         12222222223 43   78889999999999999998764322110            


Q ss_pred             ----------------c-----------ceEEEEecCCCCcEEEEEec--------------------------------
Q 021121          193 ----------------F-----------EILACDWNKYDDCLIASASV--------------------------------  213 (317)
Q Consensus       193 ----------------~-----------~v~~i~~~~~~~~~l~~~~~--------------------------------  213 (317)
                                      .           .-..++++| +..++++...                                
T Consensus       362 ~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          362 RPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             EEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                            0           011367888 5556665422                                


Q ss_pred             -------------CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc
Q 021121          214 -------------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT  280 (317)
Q Consensus       214 -------------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  280 (317)
                                   +|.|+.||+.+++. +.....+. ++..-.+...+. +++.++.||.++.||.++++.+.....++.
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~  517 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASG  517 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCe-EeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence                         37799999999874 44444333 334445555666 788899999999999999985443333333


Q ss_pred             ceeEeEEEEeccCCeEEEe
Q 021121          281 EFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       281 ~~v~~~~~~~~~~~~l~s~  299 (317)
                      ....-+.|..++..++++.
T Consensus       518 ~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          518 VMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CCSCCEEEEETTEEEEEEE
T ss_pred             cccCceEEEECCEEEEEEE
Confidence            3334577778855566544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.41  E-value=2.1e-10  Score=102.24  Aligned_cols=228  Identities=10%  Similarity=0.090  Sum_probs=145.5

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccC--C---cceEE-EEEecCCCCEEEEEc------CCCEEEEEEcCCCce
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEH--T---REVHS-ADYNPTRRDSFITSS------WDDTVKLWTVDRPTS  141 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~--~---~~v~~-~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~  141 (317)
                      ..+++++.|+.|..+|.+++   +.+..+...  .   ..+.+ ..+. ++  .++.++      .+|.|..||.++++.
T Consensus       122 g~v~v~~~dg~l~AlDa~TG---~~~W~~~~~~~~~~~~~~~~sP~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTG---QRAWSVDTRADHKRSYTITGAPRVV-NG--KVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTC---CEEEEEECCSCTTSCCBCCSCCEEE-TT--EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CEEEEEccCCEEEEEECCCC---CEeeeecCcCCCCCCccccCCcEEE-CC--EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            47888889999999999877   444333221  1   11110 0111 33  455554      378999999999998


Q ss_pred             eEEeeccc-------------------------------cceEEEEEecCCCCeEEEEeCCCe-----------------
Q 021121          142 VRTFKEHA-------------------------------YCVYNATWNPRHSDVFCSASGDCT-----------------  173 (317)
Q Consensus       142 ~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~dg~-----------------  173 (317)
                      +..+....                               .....+++.|+ ..+++.++.++.                 
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            87765210                               00125778887 678888887764                 


Q ss_pred             --EEEEeCCCCCceeeecc--Cc-------cceEEEEecCCCCc---EEEEEecCCcEEEEEccCCCccEEEEe-cCC--
Q 021121          174 --LRIWDVREMGSTMIIPA--HE-------FEILACDWNKYDDC---LIASASVDKSIKIWDVRNYRVPIAVLN-GHG--  236 (317)
Q Consensus       174 --i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~--  236 (317)
                        |..+|.++++.+..++.  |.       .+........ +++   .++.++.+|.++++|.++++. +.... ...  
T Consensus       275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w  352 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSW  352 (689)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSS
T ss_pred             eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCE-ecccccccccc
Confidence              99999999998877653  21       1111112222 343   788899999999999998874 32111 000  


Q ss_pred             ------------------------------------CceeEEEecCCCCeeEEeeec-----------------------
Q 021121          237 ------------------------------------YAVRKVKFSPHRRNLLASCSY-----------------------  257 (317)
Q Consensus       237 ------------------------------------~~v~~~~~~~~~~~~l~~~~~-----------------------  257 (317)
                                                          ..-..++++|+.. ++++...                       
T Consensus       353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred             ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccc
Confidence                                                0012378888877 4554422                       


Q ss_pred             ----------------------CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          258 ----------------------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       258 ----------------------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                                            +|.|..||+.+++.. -....+ .++..-.+... +.+++.++.||.++.||..+.+
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-W~~~~~-~~~~~g~~~ta-gglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-WEVPYV-TIFNGGTLSTA-GNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-EEEEES-SSCCCCEEEET-TTEEEEECTTSEEEEEETTTCC
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-eEccCC-CCccCccceEC-CCEEEEECCCCcEEEEECCCCc
Confidence                                  378999999998743 333333 33444466666 6789999999999999998764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.40  E-value=1.1e-09  Score=90.76  Aligned_cols=248  Identities=10%  Similarity=-0.004  Sum_probs=149.1

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeE-EEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce-----
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYD-LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV-----  109 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v-----  109 (317)
                      ++.|..+|..+++....    ......+.. .... +  ..+++++.++.|..+|..++   +.+..........     
T Consensus       112 ~g~l~a~d~~tG~~~W~----~~~~~~~~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG---~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          112 KAQVYALNTSDGTVAWQ----TKVAGEALSRPVVS-D--GLVLIHTSNGQLQALNEADG---AVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             TSEEEEEETTTCCEEEE----EECSSCCCSCCEEE-T--TEEEEECTTSEEEEEETTTC---CEEEEEECCC-----CCC
T ss_pred             CCEEEEEECCCCCEEEE----EeCCCceEcCCEEE-C--CEEEEEcCCCeEEEEECCCC---cEEEEEeCCCCceeecCC
Confidence            78999999887653211    111212211 1122 2  37888888999999998766   4443333211110     


Q ss_pred             EEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccc----eEE---EEEec--CCCCeEEEEeCCCeEEEEeCC
Q 021121          110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYC----VYN---ATWNP--RHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~---~~~~~--~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      ......  +. .++.+..++.+..+|..+++.+.........    +..   +.-.|  . +..++.++.++.+..+|.+
T Consensus       182 ~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          182 SAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTEEEEECTTSCEEEEETT
T ss_pred             CCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECC
Confidence            111222  23 6888888999999999999887766532110    000   00011  1 4567778889999999999


Q ss_pred             CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-cCCCceeEEEecCCCCeeEEeeecCC
Q 021121          181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       181 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      +++.+.....  .....+..   .+..+..++.++.+..+|..+++. +.... .....+......  +. .|+.++.+|
T Consensus       258 tG~~~w~~~~--~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g  328 (376)
T 3q7m_A          258 SGQIMWKREL--GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLY--NG-NLVVGDSEG  328 (376)
T ss_dssp             TCCEEEEECC--CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEE--TT-EEEEECTTS
T ss_pred             CCcEEeeccC--CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEE--CC-EEEEEeCCC
Confidence            9987766542  22334443   345677777899999999998774 43433 222223333332  33 477788899


Q ss_pred             eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      .+.++|..+++ .+.........+.......  +..|+.++.+|.|+.|+
T Consensus       329 ~l~~~d~~tG~-~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          329 YLHWINVEDGR-FVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEEETTTCC-EEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             eEEEEECCCCc-EEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            99999999887 3344443233333222222  56788888999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.39  E-value=6.6e-09  Score=81.72  Aligned_cols=233  Identities=6%  Similarity=-0.031  Sum_probs=143.6

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCC--ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce
Q 021121           75 LLIAAVADGSVKIYDTALPPTANP--IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV  152 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  152 (317)
                      +|+.+.. +.|+.++++.......  ...+......+..++|++++..++++-..++.|..+++................
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            4444443 4788888875421110  111222234578999999766466666678899999998665433333233568


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec--CCcEEEEEccCCCccEE
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV--DKSIKIWDVRNYRVPIA  230 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~  230 (317)
                      ..+++.|+++.++++....+.|.++++..................++++|..+.++++...  .+.|..+++..... ..
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~  160 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RI  160 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EE
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EE
Confidence            9999999756666666678899999987543322222222456899999933444444433  46888888765332 22


Q ss_pred             EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          231 VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      ...........++++|++..++++-...+.|.++|..... ....... .....+++.  +++.++++....+.|..++.
T Consensus       161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-RRKVLEG-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-EEEEEEC-CCSEEEEEE--ETTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-eEEEecC-CCCceEEEE--eCCEEEEEECCCCeEEEEeC
Confidence            2222334578999999887666666677899999987643 2222222 222355654  33455555556788988887


Q ss_pred             CCC
Q 021121          311 GMD  313 (317)
Q Consensus       311 ~~~  313 (317)
                      ...
T Consensus       237 ~~g  239 (267)
T 1npe_A          237 AIS  239 (267)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.39  E-value=8.9e-11  Score=95.36  Aligned_cols=220  Identities=10%  Similarity=-0.014  Sum_probs=145.4

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      ..+..++.++.+..+|.. +   +...........+.++...+++.  +..++.++.|..+|.+ ++....+......+.
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g---~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~  180 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-G---TEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITS  180 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-S---CEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred             CEEEEEecCCEEEEEcCC-C---CEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence            367788888989999876 3   33434444444556666666664  6777888999999998 777766665555667


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      ++...++ +.+. .++  +.|..+| .+++...........+.++...+ ++. +..++.++.+..+|. +++. +....
T Consensus       181 ~~~~d~~-g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~-~g~~-~~~~~  251 (330)
T 3hxj_A          181 AASIGKD-GTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINP-DGTE-KWRFK  251 (330)
T ss_dssp             CCEECTT-CCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECT-TSCE-EEEEE
T ss_pred             eeEEcCC-CEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECC-CCCE-eEEee
Confidence            7777665 5544 444  7899999 67776666665556677888877 654 455666788888874 3332 44444


Q ss_pred             cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .....+..+...+++.  |..++.+|.|..+|. +++ ....+......+.++...++  ..|..++.+|.+++......
T Consensus       252 ~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~-~~~~~~~~~~~~~~~~~d~~--g~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          252 TGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGT-EKWNFETGSWIIATPVIDEN--GTIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSC-EEEEEECSSCCCSCCEECTT--CCEEEECTTSCEEEEEC---
T ss_pred             CCCCccccceEcCCCe--EEEecCCCCEEEECC-CCc-EEEEEEcCCccccceEEcCC--CEEEEEcCCCeEEEEecccc
Confidence            4444455666766664  667778888999995 444 33444444455666666554  46777889999999888765


Q ss_pred             CC
Q 021121          314 PR  315 (317)
Q Consensus       314 ~~  315 (317)
                      ++
T Consensus       326 ~~  327 (330)
T 3hxj_A          326 HH  327 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.39  E-value=3.8e-09  Score=87.50  Aligned_cols=258  Identities=7%  Similarity=-0.077  Sum_probs=152.6

Q ss_pred             CceEEEEecCCCCCcceeeeeecC------CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDT------ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV  109 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v  109 (317)
                      ++.|..+|..+++...........      ...+.+.-.. ++ ..+++++.++.|..+|.+++   +.+..........
T Consensus        62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~  136 (376)
T 3q7m_A           62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SG-GHVYIGSEKAQVYALNTSDG---TVAWQTKVAGEAL  136 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ET-TEEEEEETTSEEEEEETTTC---CEEEEEECSSCCC
T ss_pred             CCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eC-CEEEEEcCCCEEEEEECCCC---CEEEEEeCCCceE
Confidence            789999998776532211110000      2223222112 23 37888889999999998876   4443333222111


Q ss_pred             EEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce-----EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc
Q 021121          110 HSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV-----YNATWNPRHSDVFCSASGDCTLRIWDVREMGS  184 (317)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (317)
                      ...... + . .++.++.++.|..+|.++++.+..........     ......   +..++.++.++.+..+|.++++.
T Consensus       137 ~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~  210 (376)
T 3q7m_A          137 SRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQM  210 (376)
T ss_dssp             SCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCE
T ss_pred             cCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcE
Confidence            111222 2 3 68888889999999999998887765432211     112222   34677888899999999999988


Q ss_pred             eeeeccCccc----eE---EEEecC-CCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee
Q 021121          185 TMIIPAHEFE----IL---ACDWNK-YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS  256 (317)
Q Consensus       185 ~~~~~~~~~~----v~---~i~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  256 (317)
                      +.........    +.   .+...| ..+..++.++.++.+..+|.++++. +.....  .....+...  +. .++.++
T Consensus       211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-~w~~~~--~~~~~~~~~--~~-~l~~~~  284 (376)
T 3q7m_A          211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-MWKREL--GSVNDFIVD--GN-RIYLVD  284 (376)
T ss_dssp             EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-EEEECC--CCEEEEEEE--TT-EEEEEE
T ss_pred             EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-EeeccC--CCCCCceEE--CC-EEEEEc
Confidence            7665422110    00   011111 0235677777899999999998774 333332  233444443  44 477777


Q ss_pred             cCCeEEEEecccccceeeeee-cccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          257 YDMTVCLWDFMVEDALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       257 ~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .++.+..+|..+++... ... .....+......   +..|+.++.+|.|.++|..+..
T Consensus       285 ~~g~l~~~d~~tG~~~w-~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          285 QNDRVMALTIDGGVTLW-TQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             TTCCEEEEETTTCCEEE-EECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCeEEEEECCCCcEEE-eecccCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCc
Confidence            89999999999887433 332 222223333333   5678888889999999987643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.38  E-value=5.3e-10  Score=99.46  Aligned_cols=229  Identities=11%  Similarity=0.079  Sum_probs=149.2

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccC-C----cceEEEEEecCCCCEEEEEcC------CCEEEEEEcCCCcee
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEH-T----REVHSADYNPTRRDSFITSSW------DDTVKLWTVDRPTSV  142 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~  142 (317)
                      ..+++++.|+.|..+|..++   +.+..+..+ .    ..+.+--...+ . .++.++.      +|.|+.+|.++++.+
T Consensus       129 ~~v~v~~~dg~l~alD~~tG---~~~W~~~~~~~~~~~~~~~~~p~v~~-~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATG---KEVWHQNTFEGQKGSLTITGAPRVFK-G-KVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTC---CEEEEEETTTTCCSSCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCC---CEEeeecCCcCcCcCcccccCcEEEC-C-EEEEEecccccCCCCEEEEEECCCCcEE
Confidence            47888889999999999877   444444332 1    11111001112 3 5555553      799999999999988


Q ss_pred             EEeeccccc--------------------------------eEEEEEecCCCCeEEEEeCCC------------------
Q 021121          143 RTFKEHAYC--------------------------------VYNATWNPRHSDVFCSASGDC------------------  172 (317)
Q Consensus       143 ~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~~~~~dg------------------  172 (317)
                      ..+......                                ...++++|+ ..+++.++.++                  
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeee
Confidence            777532111                                135678888 67777776664                  


Q ss_pred             -eEEEEeCCCCCceeeecc--Cc-------cceEEEEecCCCC---cEEEEEecCCcEEEEEccCCCccEEEEecC----
Q 021121          173 -TLRIWDVREMGSTMIIPA--HE-------FEILACDWNKYDD---CLIASASVDKSIKIWDVRNYRVPIAVLNGH----  235 (317)
Q Consensus       173 -~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----  235 (317)
                       .|..+|.++++.+..++.  |.       ....-+.... ++   ..++.++.+|.++++|.++++. +......    
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~~  360 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNFVPVNW  360 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSS
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCE-eccccccccCc
Confidence             599999999998877653  21       1122223323 55   6889999999999999998875 3333211    


Q ss_pred             -------CCce------------------------eEEEecCCCCeeEEeeec---------------------------
Q 021121          236 -------GYAV------------------------RKVKFSPHRRNLLASCSY---------------------------  257 (317)
Q Consensus       236 -------~~~v------------------------~~~~~~~~~~~~l~~~~~---------------------------  257 (317)
                             ..++                        ..++++|++. ++++...                           
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccccccccccc
Confidence                   0111                        2578899887 4555432                           


Q ss_pred             ----------------CCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          258 ----------------DMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       258 ----------------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                                      .|.|..||+.+++..- ... +..++.+..+... +.+++.++.||.+++||..+.+
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W-~~~-~~~~~~~g~~~~~-g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW-SVE-HVSPWNGGTLTTA-GNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTTEEEE-EEE-ESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccCCCCCccEEEEEeCCCCcEEe-ecC-CCCCCcCcceEeC-CCEEEEECCCCcEEEEECCCCc
Confidence                            2789999999987433 332 3344556667776 6788888999999999998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.36  E-value=5e-13  Score=110.40  Aligned_cols=181  Identities=11%  Similarity=0.029  Sum_probs=101.4

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc-ce
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY-CV  152 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v  152 (317)
                      ..+++++.||.|..||..++   +.+..+..  +.+.+..+..++. .+++++.||.|+.||.++++.+..+..+.. .+
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             CEEEEEcCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            48899999999999999877   55555544  4454445556665 677788999999999999988776653321 11


Q ss_pred             EE-EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE
Q 021121          153 YN-ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV  231 (317)
Q Consensus       153 ~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  231 (317)
                      .+ ..+. . +..+++++.++.++.||.++++.+..+..+.    ...++| ++..+++++.++.|+.||.++++. +..
T Consensus        84 ~~sp~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~-~W~  155 (369)
T 2hz6_A           84 QASPCRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTREL-RWN  155 (369)
T ss_dssp             TTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC-CCE
T ss_pred             ccCceEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCE-EEe
Confidence            00 0111 2 4467788889999999999998877766443    234567 778888889999999999998775 333


Q ss_pred             EecCCCceeEEEecCCC---CeeEEeeecCCeEEEEecccccc
Q 021121          232 LNGHGYAVRKVKFSPHR---RNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                      +..+.  .....+.++.   . .+++++.||.+..||..+++.
T Consensus       156 ~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          156 ATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCE
T ss_pred             Eeccc--ccCccccCCccccc-eEEEECCCCEEEEEECCCCcE
Confidence            22111  1233344432   3 467788899999999998874

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.35  E-value=6.7e-13  Score=109.63  Aligned_cols=180  Identities=13%  Similarity=0.025  Sum_probs=102.6

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccc-eE-EE
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE-IL-AC  198 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~-~i  198 (317)
                      .+++++.||.|+.||..+++.+.++..  +.+.+..+.++ +.++++++.||.|+.||.++++.+..+..+... +. +.
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp   87 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP   87 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence            799999999999999999999888875  44555555555 667778889999999999988876665433211 11 11


Q ss_pred             EecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec
Q 021121          199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                      ...  .+..+++++.++.++.||.++++. +..+..+.    ...++|++. .+++++.|+.|+.||.++++.+. .+..
T Consensus        88 ~~~--~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W-~~~~  158 (369)
T 2hz6_A           88 CRS--SDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRW-NATY  158 (369)
T ss_dssp             CC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCC-EEEE
T ss_pred             eEe--cCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEE-eEec
Confidence            111  345677888899999999998875 44444332    234566666 68888999999999999887432 2222


Q ss_pred             ccceeEeEEEEecc--CCeEEEeecCCcEEEEecCCCC
Q 021121          279 HTEFAVGVDMSVLV--EGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       279 ~~~~v~~~~~~~~~--~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +.  .....+.++.  +..++.++.||.|+.||..+..
T Consensus       159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             cc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            11  2233333321  1567778889999999987653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.34  E-value=1.4e-09  Score=84.39  Aligned_cols=206  Identities=6%  Similarity=-0.003  Sum_probs=140.4

Q ss_pred             eeeeecCCC--CeeEEEecCCCCCeEEEEEc--CCeEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEcC
Q 021121           53 ELVAFDTAD--GVYDLAWSESHDSLLIAAVA--DGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSW  127 (317)
Q Consensus        53 ~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~  127 (317)
                      .+..+.|..  ....++|++++ .+.++.+.  ++.|+++|+.++   +.+..+.- .......+++.  +..+.++.-.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTG---KVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCC---CEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            344445554  35789999985 34444433  579999999876   44444331 11222345555  4436666677


Q ss_pred             CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc--c---ceEEEEecC
Q 021121          128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE--F---EILACDWNK  202 (317)
Q Consensus       128 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~i~~~~  202 (317)
                      ++.+.++|..+.+.+.++......  ...++++ +..++++..++.|.++|..+.+.+..+....  .   .++.+.|. 
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATD-GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS--CCEEEEC-SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC--eEEEEEC-CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            899999999999988888643122  2335566 4444455578899999999988877766322  1   35677877 


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEecC-------------CCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH-------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                       ++.+++....++.|.+.|..+++. +..+...             ......++|+|+++.+++++...+.+.+.++...
T Consensus       161 -dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          161 -NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             566666666788999999999774 5554421             1356899999999988899989999998888764


Q ss_pred             c
Q 021121          270 D  270 (317)
Q Consensus       270 ~  270 (317)
                      .
T Consensus       239 ~  239 (266)
T 2iwa_A          239 R  239 (266)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.33  E-value=9.9e-10  Score=90.65  Aligned_cols=223  Identities=12%  Similarity=0.175  Sum_probs=138.5

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec--------CCCCeeEEEecCCCCCeEEEEEcC------CeE
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD--------TADGVYDLAWSESHDSLLIAAVAD------GSV   85 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d------g~i   85 (317)
                      +.+.+...+..     +++|+++|+.+.....+.....+        ....-..+...|++  +++++..+      |.|
T Consensus        94 ~r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           94 ERRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CSCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEE
T ss_pred             cCCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeE
Confidence            55666665543     89999999975433233333221        11134557778987  56565555      789


Q ss_pred             EEEEeCCCCCCCCceeeccC---CcceEEEEEecCCCCEEEEEc-------------------CCCEEEEEEcCCCceeE
Q 021121           86 KIYDTALPPTANPIRSLHEH---TREVHSADYNPTRRDSFITSS-------------------WDDTVKLWTVDRPTSVR  143 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~-------------------~dg~v~iwd~~~~~~~~  143 (317)
                      .++|.++.   +.+......   ..--..+.|+|+++ .+++..                   ...+|.+||+.+++.+.
T Consensus       167 ~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          167 LMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             EEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             EEEECCCC---eEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence            99998765   555554421   12244688899988 777774                   36899999999988777


Q ss_pred             Eeecc--ccceEEEEE--ecCCCCeEEEEe------CCCeEEEEeCCCCCc--eee--eccC----------------cc
Q 021121          144 TFKEH--AYCVYNATW--NPRHSDVFCSAS------GDCTLRIWDVREMGS--TMI--IPAH----------------EF  193 (317)
Q Consensus       144 ~~~~~--~~~v~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~--~~~~----------------~~  193 (317)
                      ++...  ......+.|  +|+ ++++++++      .+++|.+|....++.  ...  +...                ..
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~  321 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP  321 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred             EEecCCCCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence            77642  234566666  998 55555544      677887766554311  111  1100                13


Q ss_pred             ceEEEEecCCCCcEEEEEec-CCcEEEEEccCCCc--cEEEEecCC--------------CceeEEEecCCCCeeEEee
Q 021121          194 EILACDWNKYDDCLIASASV-DKSIKIWDVRNYRV--PIAVLNGHG--------------YAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~--~~~~~~~~~--------------~~v~~~~~~~~~~~~l~~~  255 (317)
                      ....|.++| ++++|.++.. .+.|.+||+.....  .+..+....              ..-..++++|+|++++++.
T Consensus       322 ~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          322 LVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            467899999 7777766654 67899999864322  122232210              1357899999999644443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.33  E-value=5.3e-08  Score=79.62  Aligned_cols=225  Identities=8%  Similarity=-0.009  Sum_probs=143.4

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ...|+..++....  ...+  ......+..++|.+.++.++++-...+.|..+++...   ...............+++.
T Consensus        52 ~~~I~~i~~~g~~--~~~~--~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~~~~~p~glavd  124 (349)
T 3v64_C           52 RIDIRQVLPHRSE--YTLL--LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVSTGLESPGGLAVD  124 (349)
T ss_dssp             BSCEEEECTTSCC--EEEE--ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCCCEEEEE
T ss_pred             ccceEEEeCCCCe--eEEe--ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC---CceEEEeCCCCCccEEEEe
Confidence            3467777776543  2222  2344568899999876555556566788998887654   2222222223445788898


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-CeEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-CTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      +.+..++++-...+.|.+.+++.......+...-.....+++.|.++.++++-... +.|..+++............-..
T Consensus       125 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~  204 (349)
T 3v64_C          125 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW  204 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC
T ss_pred             cCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence            76664666767788999999876543333333345689999999756666666555 88999998754333222223345


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .+.++++|..+.++++-...+.|..+|+..... .............+++. .+ .++++-...+.|..++..+++
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence            689999985666666666678899999875432 33333333455778883 33 366666677888888855554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=6.8e-10  Score=86.08  Aligned_cols=196  Identities=9%  Similarity=0.029  Sum_probs=135.1

Q ss_pred             ceEEEEEecCCCCEEEEEcC--CCEEEEEEcCCCceeEEeecccc-ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc
Q 021121          108 EVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRTFKEHAY-CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS  184 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (317)
                      ....+.|++++. ++++.+.  ++.|.++|+.+++.+..+..... ....+++.  ++.+.++.-.++.+.++|..+.+.
T Consensus        22 f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           22 FTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            357899999864 5555443  68999999999999888753222 23345555  345666666789999999999988


Q ss_pred             eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCC---ceeEEEecCCCCeeEEeeecCC
Q 021121          185 TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGY---AVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       185 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      +..+......  ...+++ +++.++++..++.|.++|..+.+. ...+.-  ...   .++.+.|. ++. +.+....++
T Consensus        99 ~~~i~~g~~~--g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~  172 (266)
T 2iwa_A           99 IKNFTHQMKD--GWGLAT-DGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTD  172 (266)
T ss_dssp             EEEEECCSSS--CCEEEE-CSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred             EEEEECCCCC--eEEEEE-CCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCE-EEEecCCCC
Confidence            8887633111  233444 555555555788999999988764 444332  111   35678888 664 566655678


Q ss_pred             eEEEEecccccceeeeeecc-------------cceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          260 TVCLWDFMVEDALVGRYDHH-------------TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .|.+.|..+++ +...+.-.             ....++|+|+|+++.+++++...+.+.+-++...
T Consensus       173 ~V~vID~~tg~-V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          173 CIARISAKDGT-LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTTCC-EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             eEEEEECCCCc-EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            99999999987 44444421             1356899999996678888888999999888654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.30  E-value=2.6e-10  Score=92.57  Aligned_cols=253  Identities=9%  Similarity=-0.012  Sum_probs=153.9

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI   99 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~   99 (317)
                      ++.+.+++.       ++.|..|| .+... .....  .....+.++...+++  .+..++.+  +..+|. .+   +..
T Consensus        30 ~g~l~v~t~-------~~~l~~~d-~~g~~-~~~~~--~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g---~~~   90 (330)
T 3hxj_A           30 NGTIYLGSS-------NKNLYAIN-TDGSV-KWFFK--SGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DG---TEK   90 (330)
T ss_dssp             TSCEECSST-------TTTTEEEC-TTSCE-EESSC--GGGEEEECCEETTTT--EECCSSCE--EEEECC-CG---GGG
T ss_pred             CCeEEEEcC-------CCEEEEEC-CCCcE-EEEEe--cCCCcccceEEecCC--cEEEecCc--EEEECC-CC---cEE
Confidence            455555543       67888888 54431 11111  122234666666665  45555544  777764 22   333


Q ss_pred             eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121          100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       100 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      ..+...........+. + . .+..++.++.|..+|.+ ++...........+.++...++ +. +..++.++.|..+|.
T Consensus        91 ~~~~~~~~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~-l~vgt~~~~l~~~d~  164 (330)
T 3hxj_A           91 WRFDTKKAIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GT-IYVGSNDNYLYAINP  164 (330)
T ss_dssp             GGSCC-----CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SC-EEEECTTSEEEEECT
T ss_pred             EEEECCCCcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CE-EEEEcCCCEEEEECC
Confidence            3322222222223333 3 3 68888889999999998 7776666555555566666655 44 556788899999999


Q ss_pred             CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       180 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      . ++....+......+.++...+ ++.+++. +  +.+..+| .+++. ..........+.++...+++.  |..++.++
T Consensus       165 ~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v~-t--~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~  235 (330)
T 3hxj_A          165 D-GTEKWRFKTNDAITSAASIGK-DGTIYFG-S--DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGT--IYVTSLDG  235 (330)
T ss_dssp             T-SCEEEEEECSSCCCSCCEECT-TCCEEEE-S--SSEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSC--EEEEETTT
T ss_pred             C-CCEeEEEecCCCceeeeEEcC-CCEEEEE-e--CEEEEEC-CCCcE-EEEEccCCcceeceEECCCCe--EEEEcCCC
Confidence            8 776666655555667777776 6665554 4  7899999 55443 444444556788889988875  55667778


Q ss_pred             eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      .+..+|. +++ ....+......+..+...+  +..|..++.+|.|..+|.
T Consensus       236 gl~~~~~-~g~-~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          236 HLYAINP-DGT-EKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             EEEEECT-TSC-EEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEECT
T ss_pred             eEEEECC-CCC-EeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEECC
Confidence            8888874 343 2333333333344455544  346777778888888885

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.30  E-value=2e-10  Score=93.99  Aligned_cols=252  Identities=9%  Similarity=-0.010  Sum_probs=147.9

Q ss_pred             EEEEecCCCCeEEEEEeccccc----ccCceEEEEecCCCCCcceeeeeec-C-----CCCeeEEEecCCCCCeEEEEEc
Q 021121           12 SVKFSPFYESRLAVATAQNFGI----LGNGRVHVLDLSPAAPALTELVAFD-T-----ADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~----~~~g~i~i~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      .+.++|+. ..+.++.. .+.-    ..++.|.+||..+... ...+. .+ .     ......++++|||. +++++..
T Consensus        69 ~i~~spDg-~~lyVan~-~~~r~~~G~~~~~VsviD~~T~~v-v~~I~-v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~  143 (368)
T 1mda_H           69 LAVAGHSG-SDFALAST-SFARSAKGKRTDYVEVFDPVTFLP-IADIE-LPDAPRFSVGPRVHIIGNCASSA-CLLFFLF  143 (368)
T ss_dssp             EEEECTTS-SCEEEEEE-EETTTTSSSEEEEEEEECTTTCCE-EEEEE-ETTSCSCCBSCCTTSEEECTTSS-CEEEEEC
T ss_pred             ceEECCCC-CEEEEEcc-cccccccCCCCCEEEEEECCCCCE-EEEEE-CCCccccccCCCcceEEEcCCCC-EEEEEcc
Confidence            79999963 23333321 0000    0167899999988762 22221 11 0     13466899999995 6666654


Q ss_pred             --CCeEEE--EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC-----CceeE----Eeecc
Q 021121           82 --DGSVKI--YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-----PTSVR----TFKEH  148 (317)
Q Consensus        82 --dg~i~v--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~----~~~~~  148 (317)
                        +..|.+  +|..+      +..+.. .+.   ....|++...+++.+.||.+.+.|+++     ++...    .+...
T Consensus       144 ~~~~~v~V~~iD~~t------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg  213 (368)
T 1mda_H          144 GSSAAAGLSVPGASD------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             SSSCEEEEEETTTEE------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             CCCCeEEEEEEchhh------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence              467888  77653      222221 111   224566666777788899998889876     33221    11112


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc--eeeecc-------C---ccceEEEEecCCCCcEEEEEec---
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPA-------H---EFEILACDWNKYDDCLIASASV---  213 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~-------~---~~~v~~i~~~~~~~~~l~~~~~---  213 (317)
                      ..+.   . .++ +..++..+. +.+.+.|......  +..+..       +   ......++++| +++.++++..   
T Consensus       214 ~~P~---~-~~~-~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~  286 (368)
T 1mda_H          214 SQAA---Q-ANY-PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHS  286 (368)
T ss_dssp             SCCE---E-ETT-TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECS
T ss_pred             CCcc---c-ccc-CCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEecccc
Confidence            2333   3 666 444445555 8999999865321  121211       0   01122278999 7666665432   


Q ss_pred             ------CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeecccceeEeE
Q 021121          214 ------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDHHTEFAVGV  286 (317)
Q Consensus       214 ------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  286 (317)
                            ++.+.++|+.+.+. +..+.... ....++|+|+++.++++.. .++.|.++|+.+.+ .+..+..... ...+
T Consensus       287 ~~~~~~~~~~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k-vv~~I~vg~~-P~~i  362 (368)
T 1mda_H          287 RSCLAAAENTSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVELDKG-PESL  362 (368)
T ss_dssp             SCTTSCEEEEEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCCCSC-CCEE
T ss_pred             CcccccCCCEEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc-EEEEEECCCC-CCEE
Confidence                  23566999998764 55544332 5789999999987777777 59999999999987 4555554332 3455


Q ss_pred             EEE
Q 021121          287 DMS  289 (317)
Q Consensus       287 ~~~  289 (317)
                      ++.
T Consensus       363 ~~~  365 (368)
T 1mda_H          363 SVQ  365 (368)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.29  E-value=3.5e-08  Score=81.83  Aligned_cols=225  Identities=8%  Similarity=-0.009  Sum_probs=144.6

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ...|+.+++....  ...+  ......+..++|.+.+..++++-...+.|..+++...   .....+.........+++.
T Consensus        95 ~~~I~~i~~~~~~--~~~~--~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~~~~~p~glavd  167 (386)
T 3v65_B           95 RIDIRQVLPHRSE--YTLL--LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVSTGLESPGGLAVD  167 (386)
T ss_dssp             BSCEEEECTTSCC--CEEE--ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEEEEECSSCSCCCCEEEE
T ss_pred             CccceeeccCCCc--EEEE--ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcEEEEeCCCCCccEEEEE
Confidence            3478888876543  2222  2344568899999876556666666788988887643   2222222223345678888


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-CeEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-CTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      +.+..++++-...+.|.+.+++.......+...-.....+++.|.++.++++-... +.|..+++............-..
T Consensus       168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~  247 (386)
T 3v65_B          168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW  247 (386)
T ss_dssp             TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence            76664666767778999999875543333333345689999999856666665555 78999998754433333333345


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .+.++++|..+.++++-...+.|..+|+..... .............+++. .+ .++++-...+.|..++..+++
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCc
Confidence            689999984666666666778899999875432 33333333456778883 33 367776677888888865554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.24  E-value=2.7e-07  Score=74.35  Aligned_cols=227  Identities=10%  Similarity=0.012  Sum_probs=140.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-CCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-ANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~  114 (317)
                      ...|+..++....  ...+  .........++|.+.++.++++-...+.|..+++..... ......+...-.....+++
T Consensus         9 ~~~I~~i~~~~~~--~~~~--~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A            9 RHEVRKMTLDRSE--YTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             BSSEEEEETTSCC--CEEE--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CCeEEEEECCCcc--eEeh--hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            3479999988754  2222  234556889999987655666666678999999864110 0111222222245578899


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-CeEEEEeCCCCCceeee-ccCc
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-CTLRIWDVREMGSTMII-PAHE  192 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~  192 (317)
                      .+.+..++++-...+.|.+.+++.......+...-.....+++.|.++.++++.... +.|...++... ....+ ...-
T Consensus        85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~  163 (316)
T 1ijq_A           85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI  163 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSC
T ss_pred             eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCC
Confidence            876553666667789999999875443333333345689999999756666555443 78988887643 33333 2233


Q ss_pred             cceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       193 ~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .....++++|..+.++++-...+.|..+|+..... ......  .......+++.. + +++++-...+.|..++..+++
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCc
Confidence            45789999984556666666677999999875332 222221  223456788853 3 466666677889988876554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.22  E-value=8.5e-09  Score=79.04  Aligned_cols=190  Identities=11%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             eeeeecCCCC--eeEEEecCCCCCeEEEEEcCC--eEEEEEeCCCCCCCCceeeccCCcce--EEEEEecCCCCEEEEEc
Q 021121           53 ELVAFDTADG--VYDLAWSESHDSLLIAAVADG--SVKIYDTALPPTANPIRSLHEHTREV--HSADYNPTRRDSFITSS  126 (317)
Q Consensus        53 ~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~  126 (317)
                      .+..+.|...  ...+.|+ ++ .+..+.+.+|  .|+++|++++   +.+...... ...  ..++..  +..+.+..-
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l~-~~~FgeGit~~--g~~ly~ltw  104 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESG---KTLQQIELG-KRYFGEGISDW--KDKIVGLTW  104 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTC---CEEEEEECC-TTCCEEEEEEE--TTEEEEEES
T ss_pred             EEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCC---cEEEEEecC-CccceeEEEEe--CCEEEEEEe
Confidence            3444455544  4788898 55 5666666666  8999999877   444444332 222  234443  443555566


Q ss_pred             CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC--c---cceEEEEec
Q 021121          127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH--E---FEILACDWN  201 (317)
Q Consensus       127 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~i~~~  201 (317)
                      .++.+.++|.++.+.+.++.... .-..++  ++ +..|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|.
T Consensus       105 ~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSS-CCCCEE--EC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             eCCEEEEEECccCcEEEEEECCC-CceEEe--cC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            78999999999999999887533 223444  55 455555556788999999998888776542  1   224557776


Q ss_pred             CCCCcEEEEEecCCcEEEEEccCCCccEEEEecC------------CCceeEEEecCCCCeeEEeeec
Q 021121          202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH------------GYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                        ++.+++..-.+..|.+.|.++++. +..+...            ....+.|+|+|+++.++++|-.
T Consensus       181 --~G~lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          181 --DGEIFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             --TTEEEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             --CCEEEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence              677777666788999999998774 4444321            2356899999999877777643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.19  E-value=6e-09  Score=79.88  Aligned_cols=181  Identities=7%  Similarity=0.085  Sum_probs=120.7

Q ss_pred             ceEEEEEecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccc-eEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc
Q 021121          108 EVHSADYNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYC-VYNATWNPRHSDVFCSASGDCTLRIWDVREMGS  184 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (317)
                      -...+.|+ ++. ++.+.+.+|  .|+++|+++++.+..+...... -..++..  +..+.+..-.++.+.+||..+.+.
T Consensus        44 ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           44 FTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred             ccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence            34788898 554 677777666  8999999999998888643322 1234443  345555666789999999999999


Q ss_pred             eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CC---CceeEEEecCCCCeeEEeeecCC
Q 021121          185 TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HG---YAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       185 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      +.++...... ..++  + ++..|+.+..++.|.++|..+.+. +..+..  ..   ..++.+.|. +|+ +.+..-.++
T Consensus       120 ~~ti~~~~eG-~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~  192 (262)
T 3nol_A          120 VRSFNYDGEG-WGLT--H-NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGE-IFANVWQTN  192 (262)
T ss_dssp             EEEEECSSCC-CCEE--E-CSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred             EEEEECCCCc-eEEe--c-CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCE-EEEEEccCC
Confidence            9888743322 3444  3 455555555678899999998764 444332  22   234557776 565 565555688


Q ss_pred             eEEEEecccccceeeeeecc------------cceeEeEEEEeccCCeEEEee
Q 021121          260 TVCLWDFMVEDALVGRYDHH------------TEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      .|.+.|..+++ +...+.-.            ....++|+++|+.+.++++|-
T Consensus       193 ~I~vIDp~tG~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          193 KIVRIDPETGK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEECTTTCB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             eEEEEECCCCc-EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999987 33333321            235689999998555555553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.18  E-value=5.4e-07  Score=73.64  Aligned_cols=237  Identities=7%  Similarity=-0.037  Sum_probs=148.9

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS  141 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  141 (317)
                      ..+|.+..++.  .|+.+. ...|+..++...    ....+.........++|.+....++.+-...+.|..+++.....
T Consensus        35 ~~~C~~~~~~~--~ll~~~-~~~I~~i~~~g~----~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           35 RRSCKALGPEP--VLLFAN-RIDIRQVLPHRS----EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             SSCEEESSSCC--EEEEEC-BSCEEEECTTSC----CEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcccccccCc--eeEeec-ccceEEEeCCCC----eeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence            34555555532  444443 345777776532    22222223445789999987664566666788999999987654


Q ss_pred             eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-CcEEEE
Q 021121          142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KSIKIW  220 (317)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~  220 (317)
                      .............+++.+.+++++++-...+.|.+.++........+...-.....++++|..+.++++-... +.|..+
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence            4444333345678999987567777777788999999875543333333334568999998556666665555 789999


Q ss_pred             EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee
Q 021121          221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      ++..... .......-.....++++|++..+.++-...+.|..+|+.... .............++++. . +.++++-.
T Consensus       188 ~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~giav~-~-~~ly~td~  263 (349)
T 3v64_C          188 SMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVF-E-DSLYWTDW  263 (349)
T ss_dssp             ETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEE-T-TEEEEEET
T ss_pred             eCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCCCCCceEEEEE-C-CEEEEecC
Confidence            8875332 222222234568999999877666666667889999987543 222222223345677773 2 55666665


Q ss_pred             cCCcEEEEe
Q 021121          301 WDELVYVWQ  309 (317)
Q Consensus       301 ~dg~i~~w~  309 (317)
                      ..+.|...+
T Consensus       264 ~~~~V~~~~  272 (349)
T 3v64_C          264 HTKSINSAN  272 (349)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEE
Confidence            677777776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.18  E-value=1.9e-07  Score=77.48  Aligned_cols=237  Identities=7%  Similarity=-0.033  Sum_probs=149.7

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV  142 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  142 (317)
                      -.|.+..+.  .+|+.+. ...|+..++...   .. ..+.........++|.+.+..++++-...+.|..++++.....
T Consensus        79 ~~C~~~~~~--~~l~~~~-~~~I~~i~~~~~---~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           79 RSCKALGPE--PVLLFAN-RIDIRQVLPHRS---EY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SCEEECSSC--CEEEEEC-BSCEEEECTTSC---CC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred             CeECCcccc--ceeEeec-CccceeeccCCC---cE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence            344444442  2444443 356777777643   22 2222234567899999876646666667889999999876544


Q ss_pred             EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-CcEEEEE
Q 021121          143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KSIKIWD  221 (317)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d  221 (317)
                      ..+.........+++.+.++.++++-...+.|.+.++........+...-.....++++|..+.++++-... +.|..++
T Consensus       152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            444333345678899987567777777788899999875443333333335578999998556566665555 7888888


Q ss_pred             ccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                      +..... .......-.....|+++|++..++++-...+.|..+|+.... .............+|++. . +.++++-..
T Consensus       232 ~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~giav~-~-~~ly~td~~  307 (386)
T 3v65_B          232 MDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVF-E-DSLYWTDWH  307 (386)
T ss_dssp             TTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEECSSCSSEEEEEEE-T-TEEEEEETT
T ss_pred             CCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEECCCCCceEEEEE-C-CEEEEeeCC
Confidence            875432 233333334578999998777666666677889999986543 222222223345677773 2 556666666


Q ss_pred             CCcEEEEec
Q 021121          302 DELVYVWQQ  310 (317)
Q Consensus       302 dg~i~~w~~  310 (317)
                      .+.|..++.
T Consensus       308 ~~~V~~~~~  316 (386)
T 3v65_B          308 TKSINSANK  316 (386)
T ss_dssp             TTEEEEEET
T ss_pred             CCeEEEEEC
Confidence            778877773

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.17  E-value=4.7e-09  Score=89.65  Aligned_cols=234  Identities=12%  Similarity=0.081  Sum_probs=149.6

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEe-c-CCCCCeEEEEE-----------------
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAW-S-ESHDSLLIAAV-----------------   80 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~~~-----------------   80 (317)
                      +++.+..+...     +++|.+.|+...+  ...+...........+++ . |+++ ++++++                 
T Consensus       100 DG~~lfVnd~~-----~~rVavIdl~t~~--~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A          100 DGRFLFMNDKA-----NTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEETT-----TTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGG
T ss_pred             CCCEEEEEcCC-----CCEEEEEECCCce--EeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCccccccc
Confidence            45666655542     7789999998764  222224455567889998 4 8885 666664                 


Q ss_pred             -cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC------------------------------
Q 021121           81 -ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD------------------------------  129 (317)
Q Consensus        81 -~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------------------------------  129 (317)
                       .++.+.+.|.++.   +....+.--. .-..++++|+|+ ++++.+.+.                              
T Consensus       172 ~~~~~vtvID~~t~---~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          172 NYVNVFTAVDADKW---EVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             GEEEEEEEEETTTT---EEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             ccCceEEEEECCCC---eEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence             3457889998754   4444443212 345577889988 565555332                              


Q ss_pred             --------EEEEEEcCC--Cce-eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCC------------cee
Q 021121          130 --------TVKLWTVDR--PTS-VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG------------STM  186 (317)
Q Consensus       130 --------~v~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~  186 (317)
                              .|.+.|..+  ++. +..+.. .....++.++|++..+++++..+.+|.++|+.+.+            ...
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~  325 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  325 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence                    366777766  444 344442 34578899999954456666678899999998642            122


Q ss_pred             eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC---------CccEEEEecCCCce-----eEEEecCCCCeeE
Q 021121          187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY---------RVPIAVLNGHGYAV-----RKVKFSPHRRNLL  252 (317)
Q Consensus       187 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~~~v-----~~~~~~~~~~~~l  252 (317)
                      .+. -......++|+| ++...++...|+.|.+||+...         ...+..+..|..+-     ..+.++|+|++ |
T Consensus       326 ~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~-l  402 (595)
T 1fwx_A          326 EPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW-L  402 (595)
T ss_dssp             CCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE-E
T ss_pred             EcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE-E
Confidence            222 334578999999 8877777788999999999762         23456666554432     23456899995 5


Q ss_pred             Eeeec---CCe----------EEEEeccccc
Q 021121          253 ASCSY---DMT----------VCLWDFMVED  270 (317)
Q Consensus       253 ~~~~~---d~~----------i~vwd~~~~~  270 (317)
                      ++...   |+.          -.++|+..++
T Consensus       403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            55442   332          2788885544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.17  E-value=2.5e-08  Score=76.44  Aligned_cols=188  Identities=9%  Similarity=0.088  Sum_probs=129.0

Q ss_pred             eeeecCCC--CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcce--EEEEEecCCCCEEEEEcCCC
Q 021121           54 LVAFDTAD--GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREV--HSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        54 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg  129 (317)
                      +..+.|..  -...+.|+.  +.+..+.+.+|.|+++|++++   +.+... - ....  ..+++  ++..+.+..-.++
T Consensus        46 v~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tg---kv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw~~~  116 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESA---QPVWME-R-LGNIFAEGLAS--DGERLYQLTWTEG  116 (268)
T ss_dssp             EEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCS---SCSEEE-E-CTTCCEEEEEE--CSSCEEEEESSSC
T ss_pred             EEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCC---cEEeEE-C-CCCcceeEEEE--eCCEEEEEEccCC
Confidence            34444543  346888874  367777788899999999887   444444 1 2222  33444  4444666677789


Q ss_pred             EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc--c---ceEEEEecCCC
Q 021121          130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE--F---EILACDWNKYD  204 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~i~~~~~~  204 (317)
                      .+.+||.++.+.+.++... ..-..++  ++ +..|+.+..++.|.++|..+.+.+..+....  .   .++.+.|.  +
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--d  190 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYS-GEGWGLC--YW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--N  190 (268)
T ss_dssp             EEEEEETTTTEEEEEEECS-SCCCCEE--EE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred             EEEEEECCcCcEEEEEeCC-CceeEEe--cC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--C
Confidence            9999999999999988753 3334555  44 5566666678999999999998887765322  1   34667776  6


Q ss_pred             CcEEEEEecCCcEEEEEccCCCccEEEEec-------------CCCceeEEEecCCCCeeEEeeec
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVPIAVLNG-------------HGYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                      +.+++....+..|.+.|.++++. +..+..             .....+.|+++|+++.+++||-.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             CEEEEEECCCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            67776666788999999998774 444331             12356899999998877877753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.16  E-value=1.3e-06  Score=72.74  Aligned_cols=228  Identities=10%  Similarity=0.012  Sum_probs=144.4

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-CCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-ANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~  114 (317)
                      ...|+..++....  ...+  ......+..++|.+.++.+.++-...+.|..+++..... ................+++
T Consensus        91 ~~~I~~i~l~~~~--~~~~--~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           91 RHEVRKMTLDRSE--YTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             TTEEEEECTTSCS--CEEE--ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             cceeEEEccCCcc--eeEe--ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            4588888887654  2222  245567899999987655555555678898888764211 1122223333456788999


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC-CCeEEEEeCCCCCceeeeccCcc
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCTLRIWDVREMGSTMIIPAHEF  193 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~  193 (317)
                      .+.+..++++-...+.|.+.+++.......+...-.....+++.|.++.++++-.. .+.|...++............-.
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~  246 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  246 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC
Confidence            88555466676778899999998665444444344568999999975555555433 47899999875444333333335


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ....|++++..+.++++-...+.|..+|+..... ......  .-.....+++.  +..++++-...+.|..+|..+++
T Consensus       247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCC
Confidence            6789999984555666656678899999876432 222222  12334567773  33467776677888888866664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.15  E-value=3e-07  Score=74.31  Aligned_cols=235  Identities=11%  Similarity=0.067  Sum_probs=142.8

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec--------------------cCCcceEEEEEec-CCCC
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH--------------------EHTREVHSADYNP-TRRD  120 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~  120 (317)
                      ...+++|.+++ .++.++..++.|..|+....    ....+.                    ........+++.+ ++. 
T Consensus        20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-   93 (322)
T 2fp8_A           20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNS----GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-   93 (322)
T ss_dssp             CCCCEECCTTC-SSEEEECTTSEEEEECCTTT----CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred             CceEEEEcCCC-CEEEEEcCCCeEEEECCCCC----ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-
Confidence            45678899987 57888888899999986543    111111                    0123578899997 554 


Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeec-----cccceEEEEEec-CCCCeEEEEeC-----------------CCeEEEE
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKE-----HAYCVYNATWNP-RHSDVFCSASG-----------------DCTLRIW  177 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~i~  177 (317)
                       |+.+...+.|..+|..+++. ..+..     ....+..+++.+ + +++.++...                 ++.|..+
T Consensus        94 -l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           94 -LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             -EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             -EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCC-CEEEEECCcccccccccceehcccCCCceEEEE
Confidence             55554455688888775532 22221     113478899999 7 676665432                 3678899


Q ss_pred             eCCCCCceeeeccCccceEEEEecCCCCcEE-EEEecCCcEEEEEccCCCc-cEEEEecCCCceeEEEecCCCCeeEEee
Q 021121          178 DVREMGSTMIIPAHEFEILACDWNKYDDCLI-ASASVDKSIKIWDVRNYRV-PIAVLNGHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       178 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      |..+++...... .-.....++++| +++.| ++-...+.|.+|++..... ....+....+ ...++++++|. +.++.
T Consensus       171 d~~~~~~~~~~~-~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~  246 (322)
T 2fp8_A          171 DPSTKETTLLLK-ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSS  246 (322)
T ss_dssp             ETTTTEEEEEEE-EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEE
T ss_pred             eCCCCEEEEecc-CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEe
Confidence            987654332222 123356799999 87755 4445668899999875321 1222211223 78899999997 45544


Q ss_pred             ec----------CCeEEEEecccccceeeeeeccc----ceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          256 SY----------DMTVCLWDFMVEDALVGRYDHHT----EFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       256 ~~----------d~~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ..          .+.|..+|.. ++ .+..+....    ..+..+++ .+ +.++++....+.|..+++...
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~-~~~~~~~~~g~~~~~~~~~~~-~~-g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GN-ILEVIPLPPPFAGEHFEQIQE-HD-GLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SC-EEEEEECCTTTTTSCCCEEEE-ET-TEEEEECSSCSEEEEEEC---
T ss_pred             cCcccccccCCCccEEEEECCC-CC-EEEEEECCCCCccccceEEEE-eC-CEEEEeecCCCceEEEecccc
Confidence            33          4668888864 33 344444322    34666666 33 566666667888999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.15  E-value=6.7e-07  Score=72.02  Aligned_cols=228  Identities=8%  Similarity=-0.014  Sum_probs=140.2

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC----CceeEEeecccc
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR----PTSVRTFKEHAY  150 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~  150 (317)
                      +|+.+.. ..|+..++...   .....+ ........++|++.+..++++-...+.|..+++..    ......+...-.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~---~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~   77 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRS---EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ   77 (316)
T ss_dssp             EEEEECB-SSEEEEETTSC---CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCc---ceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence            3444433 45888888754   222222 23456789999987664666666779999999876    222222322224


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-CcEEEEEccCCCccE
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KSIKIWDVRNYRVPI  229 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~  229 (317)
                      .+..+++.+.++++.++-...+.|.++|+........+.........++++|..+.++++.... +.|..+++..... .
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-E
Confidence            5688999876466666767788999999875433333332334578999998455555554433 6888888764321 2


Q ss_pred             EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee--cccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD--HHTEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                      ......-.....++++|++..++++-...+.|..+|+.... ......  ..-....++++. . +.++++-...+.|..
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~-~~ly~~d~~~~~V~~  233 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-E-DKVFWTDIINEAIFS  233 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-T-TEEEEEETTTTEEEE
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-C-CEEEEEECCCCeEEE
Confidence            22222334678999999887666666677899999987533 111111  112335677774 2 556666666788888


Q ss_pred             EecC
Q 021121          308 WQQG  311 (317)
Q Consensus       308 w~~~  311 (317)
                      ++..
T Consensus       234 ~~~~  237 (316)
T 1ijq_A          234 ANRL  237 (316)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            8754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.15  E-value=1.3e-08  Score=77.99  Aligned_cols=179  Identities=7%  Similarity=0.025  Sum_probs=123.8

Q ss_pred             ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce--EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121          108 EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV--YNATWNPRHSDVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      -...+.|+. + .++.+.+.+|.|+++|+++++.+..+ ... ..  ..+++  .+..+.+..-.++.+.+||.++.+.+
T Consensus        56 ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           56 FTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             ccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence            346788874 3 37888888999999999999988887 332 33  33444  44566667778999999999999998


Q ss_pred             eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCC---ceeEEEecCCCCeeEEeeecCCe
Q 021121          186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGY---AVRKVKFSPHRRNLLASCSYDMT  260 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~d~~  260 (317)
                      .++..... -..++  + +++.|+.+..++.|.++|..+.+. +..+..  +..   .++.+.|. +|+ +.+..-.++.
T Consensus       130 ~ti~~~~e-GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYSGE-GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSD  202 (268)
T ss_dssp             EEEECSSC-CCCEE--E-ETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSE
T ss_pred             EEEeCCCc-eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCe
Confidence            88874332 23444  3 455666666788999999998764 444332  222   34667777 664 5655556889


Q ss_pred             EEEEecccccceeeeeec-------------ccceeEeEEEEeccCCeEEEee
Q 021121          261 VCLWDFMVEDALVGRYDH-------------HTEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       261 i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      |.+.|..+++ +...+.-             .....++|+++|+++.+++||-
T Consensus       203 I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          203 VLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999887 3333332             1235789999998666777663

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.14  E-value=5.1e-09  Score=89.42  Aligned_cols=233  Identities=15%  Similarity=0.161  Sum_probs=153.4

Q ss_pred             CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-CCcceEEEEE-e-cCCCCEEEEEc------------------CCC
Q 021121           71 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADY-N-PTRRDSFITSS------------------WDD  129 (317)
Q Consensus        71 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~~~~------------------~dg  129 (317)
                      ||..++++...+++|.+.|++..   +....+.- .......+++ . |++. ++++++                  .++
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCc
Confidence            67544555555678999999876   44442221 2345778887 4 8888 666663                  356


Q ss_pred             EEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC-------------------------------------
Q 021121          130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC-------------------------------------  172 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------------------------  172 (317)
                      .+.+.|.++.+...++.-.. ....++++|+ ++++++++.+.                                     
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESS-CCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEECCCCeEEEEEEeCC-CccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            89999999988888776433 4677889998 66666666432                                     


Q ss_pred             -eEEEEeCCC--CCc-eeeeccCccceEEEEecCCCCcEEEEE-ecCCcEEEEEccCCCc----------cEEEEecCCC
Q 021121          173 -TLRIWDVRE--MGS-TMIIPAHEFEILACDWNKYDDCLIASA-SVDKSIKIWDVRNYRV----------PIAVLNGHGY  237 (317)
Q Consensus       173 -~i~i~d~~~--~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~----------~~~~~~~~~~  237 (317)
                       .|.+.|.++  ++. +..+.. .....++.++| ++++++++ ..+.+|.++|+.+.+.          .+.....-..
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             CcEEEEeCcccCCceeEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence             367777776  444 344442 23467899999 78765554 4678999999986421          1222222345


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccc---------cceeeeeecccce-----eEeEEEEeccCCeEEEeec--
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---------DALVGRYDHHTEF-----AVGVDMSVLVEGLLASTGW--  301 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~--  301 (317)
                      ....++|+|+| +...+.-.|+.|.+||+.+.         .+.+..+..|..+     -.++.++|| +++|++...  
T Consensus       332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D-Gk~l~~~Nk~s  409 (595)
T 1fwx_A          332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT-NDWLVCLSKFS  409 (595)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC-SSEEEEEESCC
T ss_pred             CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC-CCEEEEcCCCC
Confidence            67899999999 67777888999999999872         2355555555332     234466888 777777652  


Q ss_pred             -CCcE----------EEEecCCC
Q 021121          302 -DELV----------YVWQQGMD  313 (317)
Q Consensus       302 -dg~i----------~~w~~~~~  313 (317)
                       |+.+          .++|+..+
T Consensus       410 kdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          410 KDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             TTSSCCCCSSCCEEEEEEECSSS
T ss_pred             ccccccCCCCCCCcceEEEcCCC
Confidence             4431          77887543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.14  E-value=5.5e-07  Score=72.46  Aligned_cols=228  Identities=9%  Similarity=-0.008  Sum_probs=142.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ...|+.++++........+.  ........++|.+.++.+..+-...+.|..+++.....  ........-.....+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--~~~~~~~~l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--CCEEEEECCSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--eEEEEcCCCCCccEEEEE
Confidence            34899999987642122111  22235678999987655666666678899998765411  111222223456678888


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      +.+..++++-...+.|.+++++.................+++.|.++.++.+-. ..+.|...++............-..
T Consensus        88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~  167 (318)
T 3sov_A           88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW  167 (318)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            765546666677889999998754433333334456899999997455555542 3578999988643332222222345


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      .+.++++|..+.++++-...+.|..+|+..... .............+++..  ..++.+-...+.|..++..+++
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence            689999985566666666678899999875332 223332334556777753  3366776677889999986665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.13  E-value=6.3e-08  Score=73.62  Aligned_cols=191  Identities=12%  Similarity=0.069  Sum_probs=126.6

Q ss_pred             eeeeecCC--CCeeEEEecCCCCCeEEEEEcC--CeEEEEEeCCCCCCCCceeeccCCc-ceEEEEEecCCCCEEEEEcC
Q 021121           53 ELVAFDTA--DGVYDLAWSESHDSLLIAAVAD--GSVKIYDTALPPTANPIRSLHEHTR-EVHSADYNPTRRDSFITSSW  127 (317)
Q Consensus        53 ~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~  127 (317)
                      .+..+.|.  .-...+.|++ + .+..+.+..  ..|+.+|+.++   +.+....-... .-..++..  +..+....-.
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tg---kv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~   83 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETG---RILQRAEVPPPYFGAGIVAW--RDRLIQLTWR   83 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             EEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCC---CEEEEEeCCCCcceeEEEEe--CCEEEEEEee
Confidence            34444554  3466899986 3 455555554  48999999877   45444432221 11234444  3435666677


Q ss_pred             CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCc-----cceEEEEecC
Q 021121          128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE-----FEILACDWNK  202 (317)
Q Consensus       128 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~i~~~~  202 (317)
                      ++.+.++|.++.+.+.++.... .-..++  ++ +..|+.+..++.|.++|..+.+.+..+....     ..++.+.+. 
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-  158 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRYPG-EGWALT--SD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-  158 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEECSS-CCCEEE--EC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CCEEEEEECCcCcEEEEEeCCC-CceEEe--eC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence            8999999999999999887543 334554  45 4444455568899999999998887775422     235667765 


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCccEEEEec-------------CCCceeEEEecCCCCeeEEeeec
Q 021121          203 YDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-------------HGYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       203 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                       ++.+++..-.+..|.+.|.++++. +..+..             .....+.|+++|+++.++++|-.
T Consensus       159 -~G~lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          159 -NGELLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             -TTEEEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             -CCEEEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence             677776666788999999998774 444331             12356899999998877777754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.13  E-value=1.3e-06  Score=79.67  Aligned_cols=271  Identities=6%  Similarity=0.038  Sum_probs=167.1

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      |.++...+  ++.+.+++.       ++.|..|+.....  +...........|.++...+++  .+..|+.++-+..|+
T Consensus       175 i~~i~~d~--~g~lwigt~-------~~Gl~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g--~lwigt~~~Gl~~~~  241 (795)
T 4a2l_A          175 IASTLYRQ--GDQIYIGTS-------TDGLYTYSITQKT--FEKVIPILGTKQIQAILQQSPT--RIWVATEGAGLFLIN  241 (795)
T ss_dssp             CEEEEEEE--TTEEEEEES-------SSCEEEEETTTCC--EEECC----CCCEEEEEEEETT--EEEEEEBSSCEEEEE
T ss_pred             eEEEEECC--CCCEEEEEC-------CCCEEEEeCCCCe--EEEecCCCCCCeeEEEEEcCCC--CEEEEECCCCeEEEe
Confidence            77777777  677777664       3468888876543  2222111234568888887776  455666554488888


Q ss_pred             eCCCCCCCCceeec--------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-------cccceEE
Q 021121           90 TALPPTANPIRSLH--------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-------HAYCVYN  154 (317)
Q Consensus        90 ~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~  154 (317)
                      ....   . ...+.        -....|.++...+++.  +..|+.+ -|.+||..+++.......       ....|.+
T Consensus       242 ~~~~---~-~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~  314 (795)
T 4a2l_A          242 PKTK---E-IKNYLHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRS  314 (795)
T ss_dssp             TTTT---E-EEEECCCTTCTTSCSCSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred             CCCC---e-EEEeecCCCCccccCCCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence            6543   1 11111        1235699999888876  4555555 588899876654332211       2356999


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP  228 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  228 (317)
                      +...++ +. +..|+.++-|..|+..+........      .....|.++...+ +++ |..|+.++-|..||..+..  
T Consensus       315 i~~D~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~--  388 (795)
T 4a2l_A          315 IFMDSQ-GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQR--  388 (795)
T ss_dssp             EEECTT-SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCC--
T ss_pred             EEEeCC-cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCc--
Confidence            988876 55 4467777789999876543222111      1234588998887 665 4457777779999987654  


Q ss_pred             EEEEe---------cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-----cccceeEeEEEEeccCC
Q 021121          229 IAVLN---------GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-----HHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       229 ~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~  294 (317)
                      ...+.         .....|.++...+++. +|..|+.++-|..+|..+++ . ..+.     .....|.++...++ +.
T Consensus       389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~-~-~~~~~~~~~l~~~~v~~i~~d~~-g~  464 (795)
T 4a2l_A          389 FTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQ-V-ENFNQRNSQLVNENVYAILPDGE-GN  464 (795)
T ss_dssp             EEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCC-E-EEECTTTSCCSCSCEEEEEECSS-SC
T ss_pred             EEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCc-E-EEeecCCCCcCCCeeEEEEECCC-CC
Confidence            22221         1235788999888886 46677777789999987764 2 2222     12356888887765 44


Q ss_pred             eEEEeecCCcEEEEecCC
Q 021121          295 LLASTGWDELVYVWQQGM  312 (317)
Q Consensus       295 ~l~s~~~dg~i~~w~~~~  312 (317)
                       |..|+.+| |.+|+...
T Consensus       465 -lwigt~~G-l~~~~~~~  480 (795)
T 4a2l_A          465 -LWLGTLSA-LVRFNPEQ  480 (795)
T ss_dssp             -EEEEESSC-EEEEETTT
T ss_pred             -EEEEecCc-eeEEeCCC
Confidence             44444444 77787654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.13  E-value=2.1e-07  Score=74.61  Aligned_cols=233  Identities=9%  Similarity=-0.022  Sum_probs=134.7

Q ss_pred             eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-C-CE
Q 021121           53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-D-DT  130 (317)
Q Consensus        53 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-g~  130 (317)
                      .+..+........++|.+++ .++++-..++.|..||....    ...... .......+++.++++ ++++... + ..
T Consensus        24 ~~~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~----~~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~   96 (306)
T 2p4o_A           24 IITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGN----QQIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIP   96 (306)
T ss_dssp             EEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCC----EEEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred             EeEeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCCc----eEEEEe-CCCCceeEEEcCCCc-EEEEeccCCcce
Confidence            34444444567889999987 46666657888988886532    222222 235688999999987 5555433 2 35


Q ss_pred             EEEEEcCCCceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCc-eeee---------ccCccceEEEE
Q 021121          131 VKLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMII---------PAHEFEILACD  199 (317)
Q Consensus       131 v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~---------~~~~~~v~~i~  199 (317)
                      |..+|..+++....... .......++..+. +..+++-..++.|+.+|..+++. +...         ...-...+.+ 
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            77778777765433221 1222345555443 44455544688999999865421 1100         0111223455 


Q ss_pred             ecCCCCc-EEEEEecCCcEEEEEccC-CCc-cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce-eee
Q 021121          200 WNKYDDC-LIASASVDKSIKIWDVRN-YRV-PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-VGR  275 (317)
Q Consensus       200 ~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~  275 (317)
                       +| +++ ++++-...+.|..||+.. ++. ....+.. ......++++++|. ++++....+.|.++|.. ++.. +..
T Consensus       175 -s~-dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~-G~~~~~~~  249 (306)
T 2p4o_A          175 -KR-FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD-RSTTIIAQ  249 (306)
T ss_dssp             -EE-ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred             -Cc-CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCC-CCEEEEee
Confidence             66 554 556666678999999874 221 1112211 13457899999997 66666667889999975 4311 222


Q ss_pred             eecccceeEeEEEE---eccCCeEEEe
Q 021121          276 YDHHTEFAVGVDMS---VLVEGLLAST  299 (317)
Q Consensus       276 ~~~~~~~v~~~~~~---~~~~~~l~s~  299 (317)
                      ........++++|.   |+++.++++.
T Consensus       250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          250 AEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             cccccCCceEEEEecccCCCCEEEEEC
Confidence            22222457899998   7733344443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.13  E-value=1.4e-06  Score=79.29  Aligned_cols=272  Identities=8%  Similarity=0.016  Sum_probs=169.2

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee------cCCCCeeEEEecCCCCCeEEEEEc
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF------DTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ..|+++...+  ++.+.+++.       + -|.+|+.....  +......      -....|.++...++|  .|..|+.
T Consensus       263 ~~i~~i~~d~--~g~lWigt~-------~-Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~  328 (795)
T 4a2l_A          263 NYIRSLAMDS--QNRLWIGTF-------N-DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTY  328 (795)
T ss_dssp             SBEEEEEECT--TSCEEEEES-------S-CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEES
T ss_pred             CeEEEEEEcC--CCCEEEEeC-------C-hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEEC
Confidence            4578888777  677777764       4 57788865442  2221110      123569999988887  4677877


Q ss_pred             CCeEEEEEeCCCCCCCCceeec-------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-------
Q 021121           82 DGSVKIYDTALPPTANPIRSLH-------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-------  147 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------  147 (317)
                      ++-|..|+....    ....+.       -....|.++...+++.  |-.|+.++-|..|+..+++.......       
T Consensus       329 ~~Gl~~~~~~~~----~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          329 FGGLNYYHPIRN----RFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             SSCEEEECGGGG----SSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred             CCCeEEeCCCcc----cceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence            777888886543    111111       1245689998888775  66677777899999887654332211       


Q ss_pred             -cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec----cCccceEEEEecCCCCcEEEEEecCCcEEEEEc
Q 021121          148 -HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP----AHEFEILACDWNKYDDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       148 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~  222 (317)
                       ....|.++...++ +.+|..|+.++-|..||.++++......    .....|.++...+ ++.+.+. +. +.+.+||.
T Consensus       403 l~~~~v~~i~~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwig-t~-~Gl~~~~~  478 (795)
T 4a2l_A          403 IGSNNIKAVYVDEK-KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLG-TL-SALVRFNP  478 (795)
T ss_dssp             CSCSCEEEEEEETT-TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEE-ES-SCEEEEET
T ss_pred             CCCccEEEEEEcCC-CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEE-ec-CceeEEeC
Confidence             2356889988876 6646677877789999988765432221    1245688998887 6765554 44 45889998


Q ss_pred             cCCCccEEEEec-------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee-----eecccceeEeEEEEe
Q 021121          223 RNYRVPIAVLNG-------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-----YDHHTEFAVGVDMSV  290 (317)
Q Consensus       223 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-----~~~~~~~v~~~~~~~  290 (317)
                      .+.+  ...+..       ....|.++...+++.  |..|+. +-+..||..+.+. ...     .......|.++...+
T Consensus       479 ~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~  552 (795)
T 4a2l_A          479 EQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKR--LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEAS  552 (795)
T ss_dssp             TTTE--EEECCBCTTCCBCCCCCEEEEEECTTCC--EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECT
T ss_pred             CCCe--EEEccccccccccCCceEEEEEECCCCC--EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECC
Confidence            7643  222221       235789999998887  333444 4588888776542 100     012334688888777


Q ss_pred             ccCCeEEEeecCCcEEEEecCC
Q 021121          291 LVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       291 ~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      + +.+.+ ++..| |..|+...
T Consensus       553 ~-g~lWi-gT~~G-l~~~d~~~  571 (795)
T 4a2l_A          553 N-GIIWV-GTREG-FYCFNEKD  571 (795)
T ss_dssp             T-SCEEE-EESSC-EEEEETTT
T ss_pred             C-CCEEE-EeCCC-ceeECCCC
Confidence            6 44444 44444 67777543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.12  E-value=1.1e-07  Score=84.71  Aligned_cols=228  Identities=12%  Similarity=0.091  Sum_probs=141.7

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC----cceEE-EEEecCCCCEEEEEcC------CCEEEEEEcCCCcee
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHT----REVHS-ADYNPTRRDSFITSSW------DDTVKLWTVDRPTSV  142 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~  142 (317)
                      ..+++++.++.|..+|..++   +.+.......    ..+.+ .... ++  .++++..      +|.|..+|.++++.+
T Consensus       118 ~~v~v~~~dg~l~alD~~tG---~~~W~~~~~~~~~~~~~~~~P~v~-~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTG---KAIWSQQTTDPAKPYSITGAPRVV-KG--KVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTC---CEEEEEECSCTTSSCBCCSCCEEE-TT--EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCC---CEeeeeccCCCCCcceecCCCEEE-CC--EEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence            37788888999999998877   4443333210    11111 0111 23  4555543      589999999999988


Q ss_pred             EEeeccc---c----------------------------ceEEEEEecCCCCeEEEEeCCC-------------------
Q 021121          143 RTFKEHA---Y----------------------------CVYNATWNPRHSDVFCSASGDC-------------------  172 (317)
Q Consensus       143 ~~~~~~~---~----------------------------~v~~~~~~~~~~~~l~~~~~dg-------------------  172 (317)
                      ..+....   .                            ....+++.|. ..+++.++.++                   
T Consensus       192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            8775210   0                            0124678887 67777887766                   


Q ss_pred             eEEEEeCCCCCceeeecc--Cc-------cceEEEEecCCCCc---EEEEEecCCcEEEEEccCCCccEEEEecCC----
Q 021121          173 TLRIWDVREMGSTMIIPA--HE-------FEILACDWNKYDDC---LIASASVDKSIKIWDVRNYRVPIAVLNGHG----  236 (317)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----  236 (317)
                      .|.-+|.++++.+..++.  |.       .+.....+.. +++   .++.++.+|.++++|.++++. +.......    
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~  348 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGKVTWA  348 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCCSE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCE-eccccccccccc
Confidence            399999999998877653  21       2222222222 443   688899999999999998874 32211100    


Q ss_pred             --------Cc------------------------eeEEEecCCCCeeEEee-----------------------------
Q 021121          237 --------YA------------------------VRKVKFSPHRRNLLASC-----------------------------  255 (317)
Q Consensus       237 --------~~------------------------v~~~~~~~~~~~~l~~~-----------------------------  255 (317)
                              .+                        -..++++|+.. +++..                             
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  427 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD  427 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccccccccccCccccc
Confidence                    00                        01267777766 33321                             


Q ss_pred             -------ecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          256 -------SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       256 -------~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                             ..+|.|..||+.+++..- .... ..+.....+... +.+++.++.||.++.||..+.+
T Consensus       428 ~~~~p~~~~~g~l~A~D~~tG~~~W-~~~~-~~~~~~~~~~t~-gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          428 ATDVPAAVVSGALLAWDPVKQKAAW-KVPY-PTHWNGGTLSTA-GNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             CCCCCGGGCEEEEEEEETTTTEEEE-EEEE-SSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCC
T ss_pred             cCCCCCCCccceEEEEeCCCCcEEE-EccC-CCCCcCceeEeC-CCEEEEECCcccchhhhhhcCh
Confidence                   134889999999987443 3222 223444455555 6788889999999999988754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=1.5e-07  Score=83.74  Aligned_cols=183  Identities=11%  Similarity=0.058  Sum_probs=111.6

Q ss_pred             EEEEecCCCCEEEEEcCCC-------------------EEEEEEcCCCceeEEeecc--c-------cceEEEEEecCCC
Q 021121          111 SADYNPTRRDSFITSSWDD-------------------TVKLWTVDRPTSVRTFKEH--A-------YCVYNATWNPRHS  162 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~  162 (317)
                      .+++.|+.. +++.+..++                   .|..+|.++++.+..++..  .       .++....+..+ +
T Consensus       234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~-G  311 (668)
T 1kv9_A          234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNID-G  311 (668)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET-T
T ss_pred             ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccC-C
Confidence            467888776 788887766                   4999999999998887642  1       22332333334 4


Q ss_pred             C---eEEEEeCCCeEEEEeCCCCCceeeeccCc------------cce------------------------EEEEecCC
Q 021121          163 D---VFCSASGDCTLRIWDVREMGSTMIIPAHE------------FEI------------------------LACDWNKY  203 (317)
Q Consensus       163 ~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~v------------------------~~i~~~~~  203 (317)
                      +   .++.++.+|.++++|.++++.+...+...            .++                        ..++++| 
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-  390 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-  390 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-
Confidence            3   68889999999999999998774332111            000                        1256777 


Q ss_pred             CCcEEEEE------------------------------------ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCC
Q 021121          204 DDCLIASA------------------------------------SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH  247 (317)
Q Consensus       204 ~~~~l~~~------------------------------------~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (317)
                      +..++...                                    ..+|.|..||+.+++. +.....+ .+.....+...
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~-~W~~~~~-~~~~~~~~~t~  468 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-AWKVPYP-THWNGGTLSTA  468 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-EEEEEES-SSCCCCEEEET
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE-EEEccCC-CCCcCceeEeC
Confidence            44443331                                    1237899999998775 4343322 23333344445


Q ss_pred             CCeeEEeeecCCeEEEEecccccceeeeeecccc-eeEeEEEEeccCCeEEEee
Q 021121          248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       248 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~  300 (317)
                      +. +++.++.|+.+++||.++++.+ ..+..... .-.-+.+..++..+++.++
T Consensus       469 gg-~vf~g~~dg~l~a~d~~tG~~l-~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          469 GN-LVFQGTAAGQMHAYSADKGEAL-WQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CC-EEEEECCcccchhhhhhcChhh-eEecCCCCcccCceEEEECCEEEEEEEe
Confidence            65 6888899999999999998744 34433221 1123444455333555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.07  E-value=2.2e-07  Score=70.61  Aligned_cols=188  Identities=12%  Similarity=0.099  Sum_probs=121.4

Q ss_pred             eecCcc--eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            4 FKTPFN--GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         4 ~~~~~~--v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      |.|+..  ...+.|++   +.+..+++..    +.+.|+.+|+.+++.    +....-..........+.++.+......
T Consensus        15 ~phd~~~ftqGL~~~~---~~LyestG~~----g~S~v~~vD~~tgkv----~~~~~l~~~~fgeGi~~~~~~ly~ltw~   83 (243)
T 3mbr_X           15 YPHDTTAFTEGLFYLR---GHLYESTGET----GRSSVRKVDLETGRI----LQRAEVPPPYFGAGIVAWRDRLIQLTWR   83 (243)
T ss_dssp             EECCTTCCEEEEEEET---TEEEEEECCT----TSCEEEEEETTTCCE----EEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred             cCCCCccccccEEEEC---CEEEEECCCC----CCceEEEEECCCCCE----EEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence            444433  34788987   5666766641    245899999988762    2222333344333333334456666667


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc-----cceEEEE
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNAT  156 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~  156 (317)
                      ++.+.+||.++.   +.+..+..... -..++  +++. .|+.+..++.|.++|.++.+.+..+.-..     ..++.+.
T Consensus        84 ~~~v~v~D~~tl---~~~~ti~~~~~-Gwglt--~dg~-~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           84 NHEGFVYDLATL---TPRARFRYPGE-GWALT--SDDS-HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             SSEEEEEETTTT---EEEEEEECSSC-CCEEE--ECSS-CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             CCEEEEEECCcC---cEEEEEeCCCC-ceEEe--eCCC-EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence            899999998765   56655553222 23444  5566 45555568999999999998888776422     3456777


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC-------------ccceEEEEecCCCCcEEEEE
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH-------------EFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~i~~~~~~~~~l~~~  211 (317)
                      |. + +.+++..-.+..|.+.|.++++.+..+...             ..-.+.|+++|...+++++|
T Consensus       157 ~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          157 WV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             Ee-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            76 3 666666657889999999999887766411             12468899999555555555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.05  E-value=2.8e-07  Score=73.96  Aligned_cols=227  Identities=11%  Similarity=0.055  Sum_probs=132.0

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC--eE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG--SV   85 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i   85 (317)
                      .....++|+|  ++.+.++...      +++|..||.+..   ..  ...........+++.+++. ++++.....  .|
T Consensus        32 ~~pegia~~~--~g~lyv~d~~------~~~I~~~d~~g~---~~--~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v   97 (306)
T 2p4o_A           32 TFLENLASAP--DGTIFVTNHE------VGEIVSITPDGN---QQ--IHATVEGKVSGLAFTSNGD-LVATGWNADSIPV   97 (306)
T ss_dssp             CCEEEEEECT--TSCEEEEETT------TTEEEEECTTCC---EE--EEEECSSEEEEEEECTTSC-EEEEEECTTSCEE
T ss_pred             CCcceEEECC--CCCEEEEeCC------CCeEEEECCCCc---eE--EEEeCCCCceeEEEcCCCc-EEEEeccCCcceE
Confidence            5567899999  5667666543      788988887642   22  2223445788999999984 555543332  35


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce-eEEee---------ccccceEEE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-VRTFK---------EHAYCVYNA  155 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~---------~~~~~v~~~  155 (317)
                      ..++...++ ...+.... .......++..+++. .+++-..++.|.++|..+++. +....         ..-...+.+
T Consensus        98 ~~~d~~~g~-~~~~~~~~-~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi  174 (306)
T 2p4o_A           98 VSLVKSDGT-VETLLTLP-DAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  174 (306)
T ss_dssp             EEEECTTSC-EEEEEECT-TCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             EEEcCCCCe-EEEEEeCC-CccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence            556654431 11111111 122234455444443 455555689999999875421 11110         011234555


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCC-CCc--eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc-EEE
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVRE-MGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-IAV  231 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~  231 (317)
                        +|+++.++++-...+.|..+|+.. ++.  ...+.. ......+++++ +++++++....+.|.++|.. ++.. +..
T Consensus       175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~~~~  249 (306)
T 2p4o_A          175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTIIAQ  249 (306)
T ss_dssp             --EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred             --CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence              777445666666788999999874 221  111211 12356788998 88888887778899999975 3321 112


Q ss_pred             EecCCCceeEEEec---CCCCeeEEeee
Q 021121          232 LNGHGYAVRKVKFS---PHRRNLLASCS  256 (317)
Q Consensus       232 ~~~~~~~v~~~~~~---~~~~~~l~~~~  256 (317)
                      ....-...++++|.   |+++.++++..
T Consensus       250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          250 AEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cccccCCceEEEEecccCCCCEEEEECC
Confidence            22223467899998   88775555544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.05  E-value=3.4e-06  Score=70.21  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=143.3

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeecccc
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAY  150 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~  150 (317)
                      +|+.+. ...|+..++...   . ...+......+..++|++.+..++.+-...+.|..+++...    .....+.....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~---~-~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRS---E-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSC---S-CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCc---c-eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            444443 467888887653   2 22233345678899999876645556567789999998752    22333333445


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCCCccE
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNYRVPI  229 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~  229 (317)
                      .+..+++.+.++++.++-...+.|.+.++........+...-.....++++|..+.++++-.. .+.|...++..... .
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~  238 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y  238 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-E
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-E
Confidence            678999998657777777778899999987654444444334457899999945555555433 36899998875432 3


Q ss_pred             EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec--ccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH--HTEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                      ......-.....|+++|++..+.++=...+.|..+|+..... ......  .-....++++.  ++.++++-...+.|..
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~  315 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFS  315 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEE
Confidence            333333356789999998876556555678899999865432 112221  12234566663  2556666666778888


Q ss_pred             EecC
Q 021121          308 WQQG  311 (317)
Q Consensus       308 w~~~  311 (317)
                      ++..
T Consensus       316 ~~~~  319 (400)
T 3p5b_L          316 ANRL  319 (400)
T ss_dssp             EESS
T ss_pred             EEcC
Confidence            7743

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.04  E-value=4e-08  Score=87.43  Aligned_cols=278  Identities=7%  Similarity=0.017  Sum_probs=144.4

Q ss_pred             eEEEEecCCCCeEEEEEecccccc-----cCceEEEEecCCCCCcceeeeeec--CCCCeeEEEecCCCCCeEEEEE-cC
Q 021121           11 YSVKFSPFYESRLAVATAQNFGIL-----GNGRVHVLDLSPAAPALTELVAFD--TADGVYDLAWSESHDSLLIAAV-AD   82 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~-----~~g~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~d   82 (317)
                      .++++.|. ++++++.++......     ....+.+||......  ..+....  +.....++++.+++ .+++.|+ .+
T Consensus       189 ~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~  264 (656)
T 1k3i_A          189 AAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--SDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDA  264 (656)
T ss_dssp             SEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--CCCEEEECSCCCSSCEEEECTTS-CEEEECSSST
T ss_pred             eeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--EeCcccCCCCCCccccccCCCCC-CEEEeCCCCC
Confidence            35667763 345555544211000     012588898877652  2232222  22233456777777 5778877 45


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEc-CC-----CEEEEEEcCCCceeEEeeccc-cceE--
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS-WD-----DTVKLWTVDRPTSVRTFKEHA-YCVY--  153 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~v~iwd~~~~~~~~~~~~~~-~~v~--  153 (317)
                      ..+.+||..+. ....+..+..... -.+++..++++ +++.|+ .+     ..+.+||..+.+-.. +.... .+..  
T Consensus       265 ~~v~~yd~~t~-~W~~~~~~~~~R~-~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~  340 (656)
T 1k3i_A          265 KKTSLYDSSSD-SWIPGPDMQVARG-YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTA  340 (656)
T ss_dssp             TCEEEEEGGGT-EEEECCCCSSCCS-SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCC
T ss_pred             CceEEecCcCC-ceeECCCCCcccc-ccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccc
Confidence            68999998754 2222222222111 23445566777 777777 34     568999998764322 11000 0000  


Q ss_pred             --EEEEecCCCCeEEEEeCCC---------eEEEEeCCCCCceeeeccCc---------cceEEEEecCCCCcEEEEEec
Q 021121          154 --NATWNPRHSDVFCSASGDC---------TLRIWDVREMGSTMIIPAHE---------FEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       154 --~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~~l~~~~~  213 (317)
                        ...+..+ +.+++.++.+|         .+..||..+..-........         ..-.++.+...++++++.|+.
T Consensus       341 ~~~~~~~~~-~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~  419 (656)
T 1k3i_A          341 DKQGLYRSD-NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  419 (656)
T ss_dssp             CTTGGGTTT-CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             cccceeecC-CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence              0111123 45555555443         56788887665332222111         122344444447888888885


Q ss_pred             CC-----------cEEEEEccCCCccEEEEe---cC-CCceeEEEecCCCCeeEEeeecC-----------CeEEEEecc
Q 021121          214 DK-----------SIKIWDVRNYRVPIAVLN---GH-GYAVRKVKFSPHRRNLLASCSYD-----------MTVCLWDFM  267 (317)
Q Consensus       214 d~-----------~i~v~d~~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~~l~~~~~d-----------~~i~vwd~~  267 (317)
                      ++           .+.+||..+..-  ....   .+ ...-.+++..|+++ +++.|+.+           ..+.+||..
T Consensus       420 ~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          420 PDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             CCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCcccceEEEcCC
Confidence            43           577888776442  2221   11 12223556678888 78888754           468999987


Q ss_pred             cccc-eeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          268 VEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       268 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                      +.+- .+..+...........+.|+ +++++.||.
T Consensus       497 t~~W~~~~~~~~~R~~hs~a~ll~d-g~v~v~GG~  530 (656)
T 1k3i_A          497 QDTFYKQNPNSIVRVYHSISLLLPD-GRVFNGGGG  530 (656)
T ss_dssp             GTEEEECCCCSSCCCTTEEEEECTT-SCEEEEECC
T ss_pred             CCceeecCCCCCccccccHhhcCCC-cEEEecCCC
Confidence            7651 11111111111223344566 788888884

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.03  E-value=2.6e-06  Score=76.73  Aligned_cols=228  Identities=10%  Similarity=0.013  Sum_probs=142.5

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-CCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-ANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~  114 (317)
                      ...|+..++....  ...+  ......+..|+|.+....++++-...+.|+.+++..... ......+.........|++
T Consensus       403 ~~~Ir~i~l~~~~--~~~l--~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          403 RHEVRKMTLDRSE--YTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             BSSEEEECTTSCC--CEEE--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             ccceeEeeccCCc--ceee--ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            3478888877553  2222  234566889999986655666666678898888764211 1222233323455678899


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-CeEEEEeCCCCCceeeeccCcc
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-CTLRIWDVREMGSTMIIPAHEF  193 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~  193 (317)
                      .+.+.+++++-...+.|.+.+++.......+...-.....|++.|.++.++++-... +.|...++........+...-.
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~  558 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  558 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence            887765777777789999999986544333333445689999999855555554333 7899999875444333333335


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ....|++++..+.++++-.....|..+++..... .......  -.....|++.  +.+++++-...+.|...|..+++
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence            6789999985666666656667899999876443 3333321  1233466664  33466666667888888866654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.03  E-value=5.2e-07  Score=78.67  Aligned_cols=181  Identities=9%  Similarity=-0.014  Sum_probs=106.2

Q ss_pred             EEEecCCCCEEEEEcCC----------------CEEEEEEcCCCceeEEeeccc----------cceEEEEEecCCC---
Q 021121          112 ADYNPTRRDSFITSSWD----------------DTVKLWTVDRPTSVRTFKEHA----------YCVYNATWNPRHS---  162 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---  162 (317)
                      +++.++.. .++.+..+                +.|..+|.++++.+..++...          .++ -+...++ +   
T Consensus       240 ~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~-G~~~  316 (571)
T 2ad6_A          240 YAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVN-GKMT  316 (571)
T ss_dssp             CEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEET-TEEE
T ss_pred             EEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccC-CcEE
Confidence            45666655 56555432                369999999999887775321          222 1222234 4   


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCc-------------cce--------------------------EEEEecCC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHE-------------FEI--------------------------LACDWNKY  203 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~i~~~~~  203 (317)
                      .+++.++.+|.++++|.++++.+...+...             .++                          ..++++| 
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-  395 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-  395 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-
Confidence            467788999999999999998776553211             111                          2356777 


Q ss_pred             CCcEEEEEe-------------------------------------cCCcEEEEEccCCCccEEEEecCCCceeEEEecC
Q 021121          204 DDCLIASAS-------------------------------------VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP  246 (317)
Q Consensus       204 ~~~~l~~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~  246 (317)
                      +..++++..                                     .++.|..||..+++. +..... ...+....+..
T Consensus       396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t  473 (571)
T 2ad6_A          396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYT  473 (571)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEE
T ss_pred             CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecC-CCCccceeEEE
Confidence            444554442                                     347899999998775 444332 22233322333


Q ss_pred             CCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          247 HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      .+. +++.++.|+.++.+|.++++.+-....+....-..+.+..++..++++.
T Consensus       474 ~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          474 KGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCC-EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            344 5777899999999999998844333222221122344556633344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=3.2e-06  Score=76.91  Aligned_cols=274  Identities=10%  Similarity=0.052  Sum_probs=165.3

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeee-------------ecCCCCeeEEEecCCCCC
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA-------------FDTADGVYDLAWSESHDS   74 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~   74 (317)
                      ..|+++...+  ++.+.+++.       .+-|.+++......  .....             .-....|.++...+++  
T Consensus       258 ~~i~~i~~d~--~g~lWigt~-------~~Gl~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--  324 (781)
T 3v9f_A          258 SYIFSIKQLK--DNKLWIATE-------LNGIMILDLQQNQF--LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--  324 (781)
T ss_dssp             CCEEEEEECT--TSEEEEEES-------SSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSC--
T ss_pred             ceEEEEEECC--CCCEEEEeC-------CCCeEEECCCCCee--eeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--
Confidence            4577887777  688888775       35688888765431  11110             0123568899888876  


Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeec----------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLH----------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  144 (317)
                      .|..|+.++-|..++....    ....+.          .....|.++...+++.  |..|+.++-|..||..+++....
T Consensus       325 ~lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~  398 (781)
T 3v9f_A          325 NIWIGTWGGGINFISNAPP----TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYN  398 (781)
T ss_dssp             CEEEEEBSSCEEEECSSCC----SCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC
T ss_pred             CEEEEecCCeEEEeCCCCC----cceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEc
Confidence            4777776666888886543    111111          1235688998887775  66666666788898765432211


Q ss_pred             e---eccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          145 F---KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       145 ~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      .   ......|.++...++ +.+. .|+.++-|..+|.++++......  .....|.++...+ ++.+.+ |+. +.+..
T Consensus       399 ~~~~~~~~~~v~~i~~d~~-g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~  473 (781)
T 3v9f_A          399 KENRELLSNSVLCSLKDSE-GNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFV  473 (781)
T ss_dssp             -----CCCSBEEEEEECTT-SCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEE
T ss_pred             cCCCCCCCcceEEEEECCC-CCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEE
Confidence            1   122356888888766 5544 57777779999987654322211  1345688888887 665444 455 56889


Q ss_pred             EEccCCCccEEEEecC-----CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec----ccceeEeEEEEe
Q 021121          220 WDVRNYRVPIAVLNGH-----GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH----HTEFAVGVDMSV  290 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~  290 (317)
                      ||..+.+. .......     ...|.++...+++.  |..|+.++-+..||..+.+ . ..+..    ....|.++...+
T Consensus       474 ~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~-~-~~~~~~~~l~~~~i~~i~~d~  548 (781)
T 3v9f_A          474 IDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQL-V-RKFNQYEGFCSNTINQIYRSS  548 (781)
T ss_dssp             EESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSCEEEECTTCCE-E-EEECTTTTCSCSCEEEEEECT
T ss_pred             EeCCCCeE-EecccCcccccccceeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCe-E-EEccCCCCCCCCeeEEEEECC
Confidence            99876543 2221111     35789999998887  4445553447778876653 2 22221    134578887776


Q ss_pred             ccCCeEEEeecCCcEEEEecCC
Q 021121          291 LVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       291 ~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      + +. |..++.+|.+..|+...
T Consensus       549 ~-g~-lWi~T~~Glv~~~d~~~  568 (781)
T 3v9f_A          549 K-GQ-MWLATGEGLVCFPSARN  568 (781)
T ss_dssp             T-SC-EEEEETTEEEEESCTTT
T ss_pred             C-CC-EEEEECCCceEEECCCC
Confidence            5 44 44444467547777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.01  E-value=1.2e-06  Score=76.51  Aligned_cols=181  Identities=9%  Similarity=-0.050  Sum_probs=105.9

Q ss_pred             EEEecCCCCEEEEEcCC----------------CEEEEEEcCCCceeEEeecccc---------ceEEEEEe-cCCC---
Q 021121          112 ADYNPTRRDSFITSSWD----------------DTVKLWTVDRPTSVRTFKEHAY---------CVYNATWN-PRHS---  162 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~~~~~-~~~~---  162 (317)
                      +++.+... +++.+..+                +.|..+|.++++.+..++....         ...-+... .+ +   
T Consensus       246 ~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~-G~~~  323 (599)
T 1w6s_A          246 YAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKD-GKAR  323 (599)
T ss_dssp             CEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTT-SCEE
T ss_pred             eeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccC-CcEE
Confidence            45556655 67766654                4899999999999887764321         11112222 34 4   


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCc-------------cce--------------------------EEEEecCC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHE-------------FEI--------------------------LACDWNKY  203 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~i~~~~~  203 (317)
                      ..++.++.+|.++++|.++++.+.......             .++                          ..++++| 
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-  402 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-  402 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-
Confidence            567778999999999999998776543111             111                          2355666 


Q ss_pred             CCcEEEEE---------------------------------e------cCCcEEEEEccCCCccEEEEecCCCceeEEEe
Q 021121          204 DDCLIASA---------------------------------S------VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKF  244 (317)
Q Consensus       204 ~~~~l~~~---------------------------------~------~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  244 (317)
                      +..++++.                                 +      ..|.|..||+.+++. +..... ..+...-..
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~-~W~~~~-~~~~~~g~~  480 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY-KWEKME-RFAVWGGTM  480 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE-EEEEEE-SSCCCSBCE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCE-EeEecC-CCCccCcce
Confidence            43343332                                 1      347788999988774 333321 112221112


Q ss_pred             cCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEE
Q 021121          245 SPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       245 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  298 (317)
                      ...+. +++.++.|+.++.||.++++.+-+...+......-+.+..++..++++
T Consensus       481 ~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          481 ATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (599)
T ss_dssp             EETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EecCC-EEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence            22344 677789999999999999985443322222222335566664445544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.01  E-value=8.9e-07  Score=71.55  Aligned_cols=239  Identities=11%  Similarity=0.049  Sum_probs=140.0

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee------------------cCCCCeeEEEecC
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF------------------DTADGVYDLAWSE   70 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~------------------~~~~~v~~~~~~~   70 (317)
                      ...+++|+|  ++.++.+...      ++.|..|+.....  .......                  .....+..+++.+
T Consensus        20 ~p~~i~~d~--~g~~l~v~~~------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           20 APNSFTFDS--TNKGFYTSVQ------DGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             CCCCEECCT--TCSSEEEECT------TSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred             CceEEEEcC--CCCEEEEEcC------CCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence            467788998  5664444433      7899999876543  2221110                  0113578899997


Q ss_pred             -CCCCeEEEEEcCCeEEEEEeCCCCCCCCcee-ecc-CCcceEEEEEec-CCCCEEEEEcC-----------------CC
Q 021121           71 -SHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHE-HTREVHSADYNP-TRRDSFITSSW-----------------DD  129 (317)
Q Consensus        71 -~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg  129 (317)
                       ++  .|+++...+.|..+|...+. .+.+.. ..+ .......+++.+ +|. +.++-..                 ++
T Consensus        90 ~~g--~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           90 QNN--QLYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             TTT--EEEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             CCC--cEEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCc
Confidence             54  45555555557777754321 111111 111 123467899999 886 5555432                 37


Q ss_pred             EEEEEEcCCCceeEEeeccccceEEEEEecCCCC-eEEEEeCCCeEEEEeCCCCC--ceeeeccCccceEEEEecCCCCc
Q 021121          130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD-VFCSASGDCTLRIWDVREMG--STMIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      .|..+|..+++...... .-.....++++|+ ++ ++++-...+.|..|++....  ....+..... ...+++++ +++
T Consensus       166 ~v~~~d~~~~~~~~~~~-~~~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~  241 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLLK-ELHVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGH  241 (322)
T ss_dssp             EEEEEETTTTEEEEEEE-EESCCCEEEECTT-SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSC
T ss_pred             eEEEEeCCCCEEEEecc-CCccCcceEECCC-CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCC
Confidence            89999987665433222 2234678999998 66 44555667899999987532  1122211223 67889998 888


Q ss_pred             EEEEEec----------CCcEEEEEccCCCccEEEEecC----CCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          207 LIASASV----------DKSIKIWDVRNYRVPIAVLNGH----GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       207 ~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ++++...          .+.|..+|.. ++ .+..+...    -..++.+++. ++. ++++...++.|..+++...
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-~~~~~~~~~g~~~~~~~~~~~~-~g~-L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GN-ILEVIPLPPPFAGEHFEQIQEH-DGL-LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT-SC-EEEEEECCTTTTTSCCCEEEEE-TTE-EEEECSSCSEEEEEEC---
T ss_pred             EEEEecCcccccccCCCccEEEEECCC-CC-EEEEEECCCCCccccceEEEEe-CCE-EEEeecCCCceEEEecccc
Confidence            7776654          4668888864 33 24444332    2346677763 454 6666667888999987643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.00  E-value=2.9e-06  Score=68.27  Aligned_cols=231  Identities=6%  Similarity=-0.026  Sum_probs=143.2

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee-EEeeccccceE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-RTFKEHAYCVY  153 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~  153 (317)
                      +|+.+. ...|+..+++...  ...............++|.+.+..++.+-...+.|..+++...... ..+...-..+.
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~--~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGK--ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTT--SCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEEc-cCeEEEEECCCCc--eEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            344433 4578888887541  1111122223456789999866546666677889999998866422 22222234577


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEE
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~  232 (317)
                      .+++.+.+++++++-...+.|.++++..................++++|..+.++.+-. ..+.|..+++..... ....
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~  161 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII  161 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE
Confidence            89998865777777777889999998754433333333445689999984455555542 357888888765332 2222


Q ss_pred             ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ...-...+.++++|++..+.++=+..+.|..+|+..... ............++++..  +.++.+-...+.|..++...
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence            222345689999997776666666778899999865332 112222234456777752  55666666678888888743

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.00  E-value=1.9e-06  Score=66.41  Aligned_cols=201  Identities=12%  Similarity=0.114  Sum_probs=130.6

Q ss_pred             eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       102 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      +.+-...+..++|+|++..++++...++.|...|.. ++.++.+.- .......+++.++ +.++++.-.++.+.++++.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~-g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD-NQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST-TEEEEEETTTTEEEEEEEC
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC-CEEEEEECCCCcEEEEEcC
Confidence            334446799999999876466667889999999998 877777642 2246788899877 5666665567889999886


Q ss_pred             CCCcee---eec------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCC--CccEEEEe-------cCCCceeEE
Q 021121          181 EMGSTM---IIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY--RVPIAVLN-------GHGYAVRKV  242 (317)
Q Consensus       181 ~~~~~~---~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~-------~~~~~v~~~  242 (317)
                      ....+.   ...      ..+.....++|+| .++.|.++.+.....+|.+...  ...+....       .+-..+.++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            654321   111      1234468999999 6655555555555555555421  11122221       123457899


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeeccc---------ceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT---------EFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +++|...++++.....+.+.++|....  ++..+.-..         ..-.+|+|.++ +++.++ +..+.++.+.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCC-CCEEEE-cCCceEEEEE
Confidence            999988888888888899999996643  333332221         25688999998 564444 6666555543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.97  E-value=2e-06  Score=66.27  Aligned_cols=197  Identities=10%  Similarity=0.173  Sum_probs=127.2

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      -...+..++|+|++..++++...++.|...|.. +   +.+..+. .-......+++.+++. ++++.-.++.+.++++.
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g---~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G---DLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLT   99 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C---CEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEEC
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C---CEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcC
Confidence            345699999999876666677778888888876 3   4444432 1235678889988876 66776677899999887


Q ss_pred             CCcee---EEee------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCC---CCceeeec-------cCccceEEE
Q 021121          138 RPTSV---RTFK------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE---MGSTMIIP-------AHEFEILAC  198 (317)
Q Consensus       138 ~~~~~---~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-------~~~~~v~~i  198 (317)
                      ....+   ....      ..+.....++|+|. ++.|+++.......+|.++.   ...+..+.       .....+.++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~-~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ-DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETT-TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCC-CCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   2221      12344689999998 55555555544445554431   11122111       123356899


Q ss_pred             EecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC---------CceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG---------YAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      +++|..+.+++.......+.++|....  ++..+.-..         ...-.|+|.++|. +.++ ++-+.+..+.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEE
Confidence            999988888888888899999997753  233332111         2557899999997 4444 6666666654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.95  E-value=3.6e-06  Score=76.07  Aligned_cols=247  Identities=9%  Similarity=-0.032  Sum_probs=128.4

Q ss_pred             ceeEEEEe-cCCCCeEEEEEecccccccCceEEEEecCCC-CCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC----
Q 021121            9 NGYSVKFS-PFYESRLAVATAQNFGILGNGRVHVLDLSPA-APALTELVAFDTADGVYDLAWSESHDSLLIAAVAD----   82 (317)
Q Consensus         9 ~v~~~~~~-p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----   82 (317)
                      .+...+|| |+ ...++.+.... + .....|+++|+..+ ......+.     .....++|+||+. .|+....+    
T Consensus       175 ~~~~~~~S~PD-G~~lAy~~~~~-G-~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~WspDg~-~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPE-HDLVAFSVDMS-G-NEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGPDHT-SLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTT-TCEEEEEEESS-S-SSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECSSTT-EEEEEEECTTCC
T ss_pred             EEeeeEecCCC-CCEEEEEEeCC-C-CceEEEEEEECCCCCEeCCcccc-----CceeeEEEecCCC-EEEEEEECCCCC
Confidence            56788999 94 23444444420 0 00125999999876 42111111     1135688999985 45444444    


Q ss_pred             -CeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEc---CCCEEEEEEcCCCc-ee--EEee-ccccceE
Q 021121           83 -GSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSS---WDDTVKLWTVDRPT-SV--RTFK-EHAYCVY  153 (317)
Q Consensus        83 -g~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~-~~--~~~~-~~~~~v~  153 (317)
                       ..|.++++.++. ......+. ........+.|+|+++ +|+..+   ....|.++|+.++. ..  ..+. .......
T Consensus       246 ~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          246 ENKVWRHVMGKLQ-SEDVCLYEEHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY  323 (751)
T ss_dssp             EEEEEEEETTSCG-GGCEEEEECCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred             CCEEEEEECCCCc-hhcEEEEecCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence             246666665431 11122222 2234466789999998 554433   24578889998752 22  3332 2344556


Q ss_pred             EEEEecCCCCeEEEEeCC----CeEEEEeCCCCCceee-eccCcc--ceEEEEecCCCCcEEEEEecCCc--EEEEEc--
Q 021121          154 NATWNPRHSDVFCSASGD----CTLRIWDVREMGSTMI-IPAHEF--EILACDWNKYDDCLIASASVDKS--IKIWDV--  222 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~i~~~~~~~~~l~~~~~d~~--i~v~d~--  222 (317)
                      ++.|+.. +.+++....+    ..|..+|+.+...... +..+..  .+..+.+.  .+.++++...++.  |.++|+  
T Consensus       324 s~~~~~g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~  400 (751)
T 2xe4_A          324 DVQMHGT-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADS  400 (751)
T ss_dssp             EEEEETT-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCT
T ss_pred             EEeeeeC-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEeccc
Confidence            6666543 5555554443    3677778764322222 222332  34555554  4567777777775  455564  


Q ss_pred             -----cCCCccEEEEec-CCCceeEEEe----cCCCCeeEEeeecC---CeEEEEeccccc
Q 021121          223 -----RNYRVPIAVLNG-HGYAVRKVKF----SPHRRNLLASCSYD---MTVCLWDFMVED  270 (317)
Q Consensus       223 -----~~~~~~~~~~~~-~~~~v~~~~~----~~~~~~~l~~~~~d---~~i~vwd~~~~~  270 (317)
                           ..++ ....+.- ....+..+.+    ++++..++++.+..   ..+..+|+.+++
T Consensus       401 ~~~~~~~g~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          401 QDGVFKAGT-GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTSCCCTTT-CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccccccCCc-cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                 2222 0223221 1122334433    34666566665543   357777776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=7.7e-06  Score=74.39  Aligned_cols=276  Identities=8%  Similarity=0.059  Sum_probs=163.2

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee------cCCCCeeEEEecCCCCCeEEEEEc
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF------DTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ..|.++...+  ++.+.+++.       + -+.+||.....  +......      -....|.++...+++  .|..|+.
T Consensus       211 ~~i~~i~~d~--~g~lwigt~-------~-Gl~~~d~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~  276 (781)
T 3v9f_A          211 NDVRCIYKDT--NGNIWIGTS-------K-GLALFNANTET--FTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATE  276 (781)
T ss_dssp             SSEEEEEECT--TCCEEEEET-------T-EEEEEETTTTE--EEC-----------CCCCEEEEEECTTS--EEEEEES
T ss_pred             CceeEEEEcC--CCCEEEEeC-------C-cHheECCCCCc--EEEEEcCCCccccccCceEEEEEECCCC--CEEEEeC
Confidence            4577777666  677777764       3 68888876543  2211110      124568999888776  5777777


Q ss_pred             CCeEEEEEeCCCCCCCCcee------------eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---
Q 021121           82 DGSVKIYDTALPPTANPIRS------------LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---  146 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---  146 (317)
                      .+-|.+++.....- .....            ..-....|.++...+++.  |-.|+.++-|..++..+........   
T Consensus       277 ~~Gl~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~  353 (781)
T 3v9f_A          277 LNGIMILDLQQNQF-LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPT  353 (781)
T ss_dssp             SSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred             CCCeEEECCCCCee-eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence            45588888765411 11110            012345789998888775  6667767778889887654322111   


Q ss_pred             ------ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecCCCCcEEEEEecCCcE
Q 021121          147 ------EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKYDDCLIASASVDKSI  217 (317)
Q Consensus       147 ------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  217 (317)
                            .....|.++...++ +. +..|+.++-|..||..++......   ......|.++...+ ++.+. .|+.++.+
T Consensus       354 ~~~~~~l~~~~v~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl  429 (781)
T 3v9f_A          354 QMNESSLSNKVVSSVCDDGQ-GK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNI  429 (781)
T ss_dssp             CCCSSCCSSSCEEEEEECTT-SC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEE
T ss_pred             ccccCCCCCcceEEEEEcCC-CC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCE
Confidence                  12346888888776 44 446776667889997654222111   12235688888876 66544 46666778


Q ss_pred             EEEEccCCCccEEEEe---cCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc-----cceeEeEEEE
Q 021121          218 KIWDVRNYRVPIAVLN---GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH-----TEFAVGVDMS  289 (317)
Q Consensus       218 ~v~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~  289 (317)
                      ..+|.++.+  ...+.   .....|.++...+++.  |..|+. +-+..+|..+++ ........     ...|.++...
T Consensus       430 ~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d  503 (781)
T 3v9f_A          430 SYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQD  503 (781)
T ss_dssp             EEECSSSCE--EEECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEEC
T ss_pred             EEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEc
Confidence            999887643  33332   1345789999888876  444555 558889987654 21111111     3568888877


Q ss_pred             eccCCeEEEeecCCcEEEEecCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ++ +. |..|+.++-|..|+...
T Consensus       504 ~~-g~-lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          504 SE-GR-FWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             TT-CC-EEEEESSSCEEEECTTC
T ss_pred             CC-CC-EEEEEcCCCEEEEeCCC
Confidence            65 44 44455433366676543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.93  E-value=1.2e-06  Score=79.17  Aligned_cols=192  Identities=13%  Similarity=0.144  Sum_probs=109.8

Q ss_pred             CeeEEEec-CCCCCeEEE-EEcCC----eEEEEEeCCC-CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----C
Q 021121           62 GVYDLAWS-ESHDSLLIA-AVADG----SVKIYDTALP-PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----D  129 (317)
Q Consensus        62 ~v~~~~~~-~~~~~~l~~-~~~dg----~i~v~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g  129 (317)
                      .+...+|| |||. +|+. ...+|    .|+++|+..+ +..  ...+.   .....+.|+||++ .|+....+     .
T Consensus       175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~---~~~~~~~WspDg~-~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVS---GTNGEIVWGPDHT-SLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEE---EECSCCEECSSTT-EEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeC--Ccccc---CceeeEEEecCCC-EEEEEEECCCCCCC
Confidence            57789999 9995 5554 44333    4999998765 311  11111   1234678999998 45444443     3


Q ss_pred             EEEEEEcCCCcee--EEee-ccccceEEEEEecCCCCeEEEEe---CCCeEEEEeCCCCC-ce--eee-ccCccceEEEE
Q 021121          130 TVKLWTVDRPTSV--RTFK-EHAYCVYNATWNPRHSDVFCSAS---GDCTLRIWDVREMG-ST--MII-PAHEFEILACD  199 (317)
Q Consensus       130 ~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~-~~--~~~-~~~~~~v~~i~  199 (317)
                      .|.++++.+++..  ..+. ........+.|+|+ ++.|+..+   ....|+++|+.++. ..  ..+ ........++.
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT-SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCC-CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            6888898876422  2222 22234678899999 66555443   24468889998753 22  333 33344556666


Q ss_pred             ecCCCCcEEEEEecC----CcEEEEEccCCCccEEE-EecCCC--ceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          200 WNKYDDCLIASASVD----KSIKIWDVRNYRVPIAV-LNGHGY--AVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       200 ~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      |+. .+.+++....+    ..|..+|+.+... ... +..+..  .+..+.+  .+..++++...++..++|-
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence            554 55555555443    2566677654221 122 233333  3445555  4555788888888755543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.93  E-value=4.7e-06  Score=72.80  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=135.1

Q ss_pred             EEEEEcCCeEEEEEeCCCCCCCCceeeccCC----cceEE-EEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEE
Q 021121           76 LIAAVADGSVKIYDTALPPTANPIRSLHEHT----REVHS-ADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        76 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~  144 (317)
                      +++++.|+.+.-+|..++   +.+.......    ..+.+ .... ++  .+++++      .+|.|+.+|.++++.+.+
T Consensus       124 V~v~t~dg~l~AlDa~TG---~~~W~~~~~~~~~~~~~~ssP~v~-~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETG---ETVWKVENSDIKVGSTLTIAPYVV-KD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             EEEECTTSEEEEEETTTC---CEEEEEECCCGGGTCBCCSCCEEE-TT--EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCC---CEEEeecCCCCCccceeecCCEEE-CC--EEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence            788888999999998876   4433322111    01111 1111 33  456555      389999999999998877


Q ss_pred             eeccccc-------------------------------------e-EEEEEecCCCCeEEEEeCC---------------
Q 021121          145 FKEHAYC-------------------------------------V-YNATWNPRHSDVFCSASGD---------------  171 (317)
Q Consensus       145 ~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~~~~~d---------------  171 (317)
                      +......                                     + ..+++.+. ..+++.+..+               
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~-~g~vy~g~g~~~p~~~~~r~gd~~y  276 (599)
T 1w6s_A          198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDNKW  276 (599)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC-CCEEEEeCCCCccccCcccCCCccc
Confidence            6532111                                     0 13456666 5666666654               


Q ss_pred             -CeEEEEeCCCCCceeeeccCc----------cceEEEEec-CCCC---cEEEEEecCCcEEEEEccCCCccEEEEecC-
Q 021121          172 -CTLRIWDVREMGSTMIIPAHE----------FEILACDWN-KYDD---CLIASASVDKSIKIWDVRNYRVPIAVLNGH-  235 (317)
Q Consensus       172 -g~i~i~d~~~~~~~~~~~~~~----------~~v~~i~~~-~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-  235 (317)
                       +.|.-+|.++++.+-.++...          .++. +... . ++   ..++.++.+|.++++|.++++. +...... 
T Consensus       277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~  353 (599)
T 1w6s_A          277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGAL-VSANKLDD  353 (599)
T ss_dssp             SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESST
T ss_pred             cceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCE-eecccccC
Confidence             489999999998887665322          1121 2222 2 55   5778888999999999998774 3332210 


Q ss_pred             ------------CCce--------------------------eEEEecCCCCeeEEee----------------------
Q 021121          236 ------------GYAV--------------------------RKVKFSPHRRNLLASC----------------------  255 (317)
Q Consensus       236 ------------~~~v--------------------------~~~~~~~~~~~~l~~~----------------------  255 (317)
                                  ..++                          ..++++|+.. ++++.                      
T Consensus       354 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~g~~~~  432 (599)
T 1w6s_A          354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMDWEPFMLPYKAGQFFV  432 (599)
T ss_dssp             TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEeccccceeeecccccccCCccee
Confidence                        1111                          2456777665 33322                      


Q ss_pred             -----------e------cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          256 -----------S------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       256 -----------~------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                                 +      .+|.|..||+.+++.+-+....  .+..+-..... +.+++.++.||.++.||..+.+
T Consensus       433 g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~ta-gg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          433 GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATA-GDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET-TTEEEEECTTSEEEEEETTTCC
T ss_pred             cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEec-CCEEEEECCCCeEEEEECCCCC
Confidence                       1      3478999999988744332222  22222222333 5677788999999999988754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.92  E-value=2e-05  Score=69.43  Aligned_cols=225  Identities=4%  Similarity=-0.056  Sum_probs=144.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      .+.|+..+++...  .........-..+..++|.+.++.++++-..++.|..++++..   .....+.........+++.
T Consensus        14 ~~~I~~i~l~~~~--~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---~~~~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           14 RADIRRISLETNN--NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---ALEHVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             TTEEEEEESSCTT--CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCCCEEEEE
T ss_pred             CCcEEEEECCCCC--cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---CcEEEEeCCCCCcceEEEE
Confidence            5589999998654  2222222333468899999977556666667788998887643   2222222223456788888


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEE-eCCCeEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA-SGDCTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      +.+.+++++-...+.|.+.+++.......+...-.....+++.|..+.++.+- +..+.|...++.......... .-..
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~  167 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGR  167 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSS
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCC
Confidence            77664666767788999999875543323323445689999999756555554 235788888886554433333 3445


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ...+++++..++++++-...+.|..+|+.....  ..+.........+++.. + +++++-...+.|...|..+++
T Consensus       168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             cceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence            789999984566666666678899999976543  23333333456788765 3 356665567888888866554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.91  E-value=6.5e-06  Score=71.93  Aligned_cols=166  Identities=9%  Similarity=-0.015  Sum_probs=98.0

Q ss_pred             CEEEEEEcCCCceeEEeec--cc-------cceEEEEEe-cCCC---CeEEEEeCCCeEEEEeCCCCCceeeeccCc---
Q 021121          129 DTVKLWTVDRPTSVRTFKE--HA-------YCVYNATWN-PRHS---DVFCSASGDCTLRIWDVREMGSTMIIPAHE---  192 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  192 (317)
                      +.|..+|.++++.+..++.  |.       ....-+... .+ +   ..++.++.+|.++++|.++++.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKD-GKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSS-SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCC-CCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999888753  21       111112222 34 4   378889999999999999998776543221   


Q ss_pred             ----------cc--------------------------------eEEEEecCCCCcEEEEEe------------------
Q 021121          193 ----------FE--------------------------------ILACDWNKYDDCLIASAS------------------  212 (317)
Q Consensus       193 ----------~~--------------------------------v~~i~~~~~~~~~l~~~~------------------  212 (317)
                                .+                                -..++++|..+.+++...                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      00                                013456663333333221                  


Q ss_pred             --------------cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec
Q 021121          213 --------------VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       213 --------------~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                                    .+|.|..||+.+++. +...... .++..-.....+. +++.++.|+.++.||.++++.+- ++..
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW-~~~~  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELW-KFQT  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEE-EEEC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCE-EEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEE-EecC
Confidence                          257899999998875 3333322 1222211222344 67779999999999999998543 4433


Q ss_pred             ccc-eeEeEEEEeccCCeEEEe
Q 021121          279 HTE-FAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       279 ~~~-~v~~~~~~~~~~~~l~s~  299 (317)
                      ... .-.-+.+..++..++++.
T Consensus       526 ~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcccCceEEEECCEEEEEEE
Confidence            222 122366667744455543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.90  E-value=3.8e-06  Score=73.27  Aligned_cols=227  Identities=11%  Similarity=0.030  Sum_probs=137.3

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCC----cceEE-EEEecCCCCEEEEEcC------CCEEEEEEcCCCcee
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHT----REVHS-ADYNPTRRDSFITSSW------DDTVKLWTVDRPTSV  142 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~  142 (317)
                      ..+++++.++.+..+|..++   +.+.......    ..+.+ .... ++  .+++++.      ++.|..+|.++++.+
T Consensus       116 ~~v~v~~~dg~l~alD~~tG---~~~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTG---KINWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTC---CEEEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCEEEEEECCCC---CEEEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            37788888999999998876   4433322111    01111 1111 33  5666654      799999999999988


Q ss_pred             EEeeccccc--------------------------------------eEEEEEecCCCCeEEEEeCC-------------
Q 021121          143 RTFKEHAYC--------------------------------------VYNATWNPRHSDVFCSASGD-------------  171 (317)
Q Consensus       143 ~~~~~~~~~--------------------------------------v~~~~~~~~~~~~l~~~~~d-------------  171 (317)
                      .++......                                      ...+++.+. ..+++.+..+             
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCccccCCccCCCc
Confidence            776532110                                      013556666 4555555432             


Q ss_pred             ---CeEEEEeCCCCCceeeeccC--c--------cceEEEEecCCCC---cEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          172 ---CTLRIWDVREMGSTMIIPAH--E--------FEILACDWNKYDD---CLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       172 ---g~i~i~d~~~~~~~~~~~~~--~--------~~v~~i~~~~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                         +.|..+|.++++.+-.++..  .        .++. +...+ ++   ..++.++.+|.++++|.++++. +......
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~  345 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNL-IVAEKVD  345 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCE-EEEEESS
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCE-Eeeeccc
Confidence               36999999999887766532  1        1221 22223 45   3677888899999999988774 3332211


Q ss_pred             C-------------Cce--------------------------eEEEecCCCCeeEEeee--------------------
Q 021121          236 G-------------YAV--------------------------RKVKFSPHRRNLLASCS--------------------  256 (317)
Q Consensus       236 ~-------------~~v--------------------------~~~~~~~~~~~~l~~~~--------------------  256 (317)
                      .             .++                          ..++++|+.. +++...                    
T Consensus       346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~  424 (571)
T 2ad6_A          346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFF  424 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCcc
Confidence            1             111                          2467888776 444432                    


Q ss_pred             -----------------cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          257 -----------------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       257 -----------------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                                       .+|.|..||..+++..- +... ...+.+...... +.+++.++.||.|+.||..+.+
T Consensus       425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W-~~~~-~~~~~~~~~~t~-gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW-TKWE-KFAAWGGTLYTK-GGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE-EEEE-SSCCCSBCEEET-TTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccceeccCccccCCCCCCeEEEEECCCCCEEE-EecC-CCCccceeEEEC-CCEEEEEcCCCeEEEEECCCCC
Confidence                             35789999999887433 3322 223333344444 5677778999999999987654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.90  E-value=9.4e-06  Score=70.92  Aligned_cols=230  Identities=10%  Similarity=-0.009  Sum_probs=136.0

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCc----ceE-EEEEecC---CCCEEEEEc------CCCEEEEEEcCCC
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTR----EVH-SADYNPT---RRDSFITSS------WDDTVKLWTVDRP  139 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~~~l~~~~------~dg~v~iwd~~~~  139 (317)
                      ..++.++.++.|.-+|.+++   +.+........    .+. ......+   ++..+++++      .+|.|..+|.+++
T Consensus       118 ~~v~~~t~dg~l~AlD~~TG---~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          118 DKVFFGTLDASVVALNKNTG---KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSC---CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred             CEEEEEeCCCEEEEEECCCC---CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence            36788888999999998877   44333321110    111 1111111   221455554      3789999999999


Q ss_pred             ceeEEeeccccce-----------------------------------------EEEEEecCCCCeEEEEeC--------
Q 021121          140 TSVRTFKEHAYCV-----------------------------------------YNATWNPRHSDVFCSASG--------  170 (317)
Q Consensus       140 ~~~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~~l~~~~~--------  170 (317)
                      +.+.........+                                         ..+++.|. ..+++.+..        
T Consensus       195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~-~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE-TNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT-TTEEEEEECCBSSSCGG
T ss_pred             CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC-CCEEEEeCCCCCcccCc
Confidence            8877654211000                                         12456666 556665552        


Q ss_pred             ------------C----CeEEEEeCCCCCceeeecc--Cc--------cceEEEEec-CCCC---cEEEEEecCCcEEEE
Q 021121          171 ------------D----CTLRIWDVREMGSTMIIPA--HE--------FEILACDWN-KYDD---CLIASASVDKSIKIW  220 (317)
Q Consensus       171 ------------d----g~i~i~d~~~~~~~~~~~~--~~--------~~v~~i~~~-~~~~---~~l~~~~~d~~i~v~  220 (317)
                                  |    +.|.-+|.++++.+-.++.  |.        .++. +... . ++   ..++.++.+|.++++
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~l  351 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVV  351 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEE
Confidence                        2    6899999999998877653  21        1221 1221 2 45   478889999999999


Q ss_pred             EccCCCccEEEEecCC-------------Cc--------------------------------eeEEEecCCCCeeEEee
Q 021121          221 DVRNYRVPIAVLNGHG-------------YA--------------------------------VRKVKFSPHRRNLLASC  255 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~-------------~~--------------------------------v~~~~~~~~~~~~l~~~  255 (317)
                      |.++++. +.......             .+                                -..++++|+.. ++++.
T Consensus       352 D~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~  429 (582)
T 1flg_A          352 DRSNGKL-QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVP  429 (582)
T ss_dssp             ETTTCCE-EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEE
T ss_pred             ECCCCCE-ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEe
Confidence            9988764 33322111             00                                01356677665 34332


Q ss_pred             e---------------------------------cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecC
Q 021121          256 S---------------------------------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWD  302 (317)
Q Consensus       256 ~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  302 (317)
                      .                                 .+|.|..||+.+++..-+. .. ..++..-..... +.+++.++.|
T Consensus       430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~-~~-~~~~~~g~~~ta-gglvf~g~~d  506 (582)
T 1flg_A          430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEH-KE-HLPLWAGVLATA-GNLVFTGTGD  506 (582)
T ss_dssp             EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEE-EE-SSCCCSCCEEET-TTEEEEECTT
T ss_pred             chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEe-cC-CCCCcccceEeC-CCEEEEECCC
Confidence            2                                 2578999999998744332 22 122332223333 5688889999


Q ss_pred             CcEEEEecCCCC
Q 021121          303 ELVYVWQQGMDP  314 (317)
Q Consensus       303 g~i~~w~~~~~~  314 (317)
                      |.++.||..+.+
T Consensus       507 g~l~A~D~~tG~  518 (582)
T 1flg_A          507 GYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEETTTCC
T ss_pred             CcEEEEECCCCC
Confidence            999999987764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=6.3e-06  Score=69.28  Aligned_cols=237  Identities=8%  Similarity=0.015  Sum_probs=138.4

Q ss_pred             CeeEEEecC-CCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-CC----EEEEEE
Q 021121           62 GVYDLAWSE-SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-DD----TVKLWT  135 (317)
Q Consensus        62 ~v~~~~~~~-~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~v~iwd  135 (317)
                      ....++++| ++ ..|.++...+.|+.+|+...    .+..+.........++|+++++ .|+.+.. ++    .+..++
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~-~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKE----YVSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTT----EEEEEECCCSCEEEEEECTTSS-EEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCC----EEEEEecCCCCcceEEEeCCCC-EEEEEeCCCCcccceEEEEe
Confidence            356788887 34 34555555578888887643    2333333455688999999987 5555543 22    344445


Q ss_pred             cCCCcee--EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-CccceEEEEecCCCCc-EEEEE
Q 021121          136 VDRPTSV--RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-HEFEILACDWNKYDDC-LIASA  211 (317)
Q Consensus       136 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~-~l~~~  211 (317)
                      .. +...  ..+.. ......++++|+++.++++-..++.|..++...+........ .......++++| +++ ++++-
T Consensus       212 ~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d  288 (430)
T 3tc9_A          212 RE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVV  288 (430)
T ss_dssp             GG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEE
T ss_pred             CC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEE
Confidence            43 3222  22322 234678899995477777777788999999876543222221 223467899999 887 55555


Q ss_pred             ecCCcEEEEEccCCCcc---EEEEecC---------------CCcee-EEEec--------CCCCeeEEeeecCCeEEEE
Q 021121          212 SVDKSIKIWDVRNYRVP---IAVLNGH---------------GYAVR-KVKFS--------PHRRNLLASCSYDMTVCLW  264 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~---~~~~~~~---------------~~~v~-~~~~~--------~~~~~~l~~~~~d~~i~vw  264 (317)
                      ...+.|..++.......   ...+.+.               -.... .++..        +++. ++++=...+.|+.+
T Consensus       289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i  367 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRIL  367 (430)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEE
T ss_pred             CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEE
Confidence            66788999887642110   1112111               00122 44443        2343 45554556788888


Q ss_pred             ecccccceeeeeecc------------------cceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          265 DFMVEDALVGRYDHH------------------TEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       265 d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +. ++. + ..+.+.                  -.....++++|+++.++++-...+.|+.++++
T Consensus       368 ~~-~G~-v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          368 TP-QGR-V-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             CT-TSE-E-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCc-E-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            83 332 2 222211                  11468899998535666666667888887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.86  E-value=1.4e-05  Score=72.10  Aligned_cols=227  Identities=9%  Similarity=0.003  Sum_probs=137.8

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCC----ceeEEeecccc
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRP----TSVRTFKEHAY  150 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~  150 (317)
                      +|+... ...|+..++...   . ...+......+..++|.+....++++-...+.|+.+++...    .....+.....
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~---~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~  471 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRS---E-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  471 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSC---C-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred             cccccc-ccceeEeeccCC---c-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence            444443 455777776643   2 22233345667899999866646666667789999998753    22233333445


Q ss_pred             ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-CcEEEEEccCCCccE
Q 021121          151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KSIKIWDVRNYRVPI  229 (317)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~  229 (317)
                      .+..|++.+.+++++++-...+.|.+.++........+.........|+++|..+.++++-... +.|.+.++..... .
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~  550 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y  550 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-E
Confidence            6788999988567777777889999999875543333333344578999999446565554333 6788888875432 3


Q ss_pred             EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecc--cceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                      ......-.....|++++.+..++++=...+.|...++.... ........  -....+|++..  +.++++-...+.|..
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFS  627 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEE
Confidence            33333335678999998777555555566789999986543 22222221  12234565532  445555555666766


Q ss_pred             Eec
Q 021121          308 WQQ  310 (317)
Q Consensus       308 w~~  310 (317)
                      .+.
T Consensus       628 ~dk  630 (791)
T 3m0c_C          628 ANR  630 (791)
T ss_dssp             EET
T ss_pred             EeC
Confidence            654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=1.8e-05  Score=66.59  Aligned_cols=241  Identities=10%  Similarity=0.137  Sum_probs=134.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC----e
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG----S   84 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~   84 (317)
                      .+..++++|..++.+.++..       .+.|+.+|++...  +..+.  ........++|++++..++++...++    .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~-------~~~I~~id~~~~~--v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE-------QHPTRLIDFEKEY--VSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPN  206 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB-------TEEEEEEETTTTE--EEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred             CCCEEEECCCCCCeEEEEeC-------CCcEEEEECCCCE--EEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence            45678888721355555543       3688889887643  22222  34456889999999843444443222    2


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec-cccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  163 (317)
                      +..++.. + .......+.. ......++++|++..++++-..++.|..++..++........ .......++|+|+ ++
T Consensus       207 v~~~~~~-g-~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd-G~  282 (430)
T 3tc9_A          207 NYILTRE-S-GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS-GN  282 (430)
T ss_dssp             EEEEEGG-G-TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT-SS
T ss_pred             EEEEeCC-C-ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC-CC
Confidence            3334432 2 1111122221 234567889994343677777789999999987654222221 2245789999999 66


Q ss_pred             -eEEEEeCCCeEEEEeCCCC--Cc--eeeeccC---------------ccceE-EEEecC-------CCCcEEEEEecCC
Q 021121          164 -VFCSASGDCTLRIWDVREM--GS--TMIIPAH---------------EFEIL-ACDWNK-------YDDCLIASASVDK  215 (317)
Q Consensus       164 -~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~---------------~~~v~-~i~~~~-------~~~~~l~~~~~d~  215 (317)
                       ++++-...+.|..++....  +.  ...+.+.               -.... .++..+       .++.++++-...+
T Consensus       283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~  362 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH  362 (430)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred             EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence             6666667888999887532  11  1111111               00122 344421       1456666666667


Q ss_pred             cEEEEEccCCCccEEEEecC------------------CCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          216 SIKIWDVRNYRVPIAVLNGH------------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      .|+.++. ++.  +..+.+.                  -.....++++|++..++++-..+..|+.++++
T Consensus       363 ~I~~i~~-~G~--v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          363 CIRILTP-QGR--VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEECT-TSE--EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECC-CCc--EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            8888883 332  3333221                  01467888888544456655566777777653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.80  E-value=1.6e-05  Score=66.78  Aligned_cols=239  Identities=7%  Similarity=0.004  Sum_probs=140.8

Q ss_pred             CeeEEEecCC-CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC---C-EEEEEEc
Q 021121           62 GVYDLAWSES-HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD---D-TVKLWTV  136 (317)
Q Consensus        62 ~v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~v~iwd~  136 (317)
                      ....++|.|+ ....|..+...+.|+.++...+    .+..+.........+++++++. ++++....   . .+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT----EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC----EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            3568899985 1234555544478999987543    2333333455688999999998 66665421   1 2333443


Q ss_pred             CCCcee-EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-cc-CccceEEEEecCCCCc-EEEEEe
Q 021121          137 DRPTSV-RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-PA-HEFEILACDWNKYDDC-LIASAS  212 (317)
Q Consensus       137 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~v~~i~~~~~~~~-~l~~~~  212 (317)
                      ..+... ..+. .-.....++++|+++.++++-..++.|+.+|..++.....+ .. .......++++| +++ ++++-.
T Consensus       215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~  292 (433)
T 4hw6_A          215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYN  292 (433)
T ss_dssp             GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEET
T ss_pred             CCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeC
Confidence            322211 1222 23346778999954777777777889999998866552222 11 112234699999 777 555555


Q ss_pred             cCCcEEEEEccCCCcc---EEEEecC---------------CCceeEEEe---------cCCCCeeEEeeecCCeEEEEe
Q 021121          213 VDKSIKIWDVRNYRVP---IAVLNGH---------------GYAVRKVKF---------SPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~---~~~~~~~---------------~~~v~~~~~---------~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      ..+.|+.++.......   ...+.+.               -.....+++         .+++. ++++-...+.|+.++
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEEC
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEEC
Confidence            6788999886532110   1122111               123567898         66665 566656678899988


Q ss_pred             cccccceeeeeecc------------------cceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          266 FMVEDALVGRYDHH------------------TEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       266 ~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      . ++. + ..+.+.                  -....+|+++|..+.++++=...+.|+..+++
T Consensus       372 ~-~G~-v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          372 P-EGR-V-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             T-TSE-E-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             C-CCC-E-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            5 332 2 222211                  12367899995436666666677888888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.79  E-value=6.3e-08  Score=86.42  Aligned_cols=228  Identities=10%  Similarity=0.013  Sum_probs=133.6

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCC-CCCceeeccCCcceEEEEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPT-ANPIRSLHEHTREVHSADY  114 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~  114 (317)
                      .+.|+..++....  ...+  ......+..++|.+.+..++++-...+.|+.+++..... ......+.........|++
T Consensus       385 ~~~I~~id~~~~~--~~~~--~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSE--YTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCC--EECC--SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCc--ceee--eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            4477777776543  1111  123345678999987654555545567899998864100 0111111111223456788


Q ss_pred             ecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC-CeEEEEeCCCCCceeeeccCcc
Q 021121          115 NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD-CTLRIWDVREMGSTMIIPAHEF  193 (317)
Q Consensus       115 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~  193 (317)
                      .+.+..++++-...+.|.++++........+.........+++.|.++.++++-... +.|..+++........+...-.
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~  540 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  540 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence            765553566656678999999876544333333334578899999756666554333 7888888764332222222223


Q ss_pred             ceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec--CCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       194 ~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ..+.|+++|..+.++++-...+.|.++|+..... ...+..  .......|++..+  +++++....+.|..++..+++
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence            4578999985566777766778899999875332 222221  1123345666543  467777777889999876665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.78  E-value=7.1e-05  Score=65.94  Aligned_cols=228  Identities=6%  Similarity=-0.037  Sum_probs=145.7

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      +|+.+ ....|+..+++..   .....+. ..-..+..++|.+.+..++.+-..++.|..++++.......+......+.
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~---~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETN---NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCT---TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCC---CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            44444 5678999998754   2111111 12346789999997764666667789999999876544444433334578


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE-ecCCcEEEEEccCCCccEEEE
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA-SVDKSIKIWDVRNYRVPIAVL  232 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~  232 (317)
                      .+++.+.++++.++-...+.|.+.++........+...-.....++++|..+.++++- +..+.|...++..... ....
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~  162 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV  162 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE
Confidence            8999887567777777788999999875443333323334568999998556555554 2256788888765442 2223


Q ss_pred             ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                       ..-.....|+++++++.+.++=...+.|...|+.....  ..+...-....++++..  +.++++-...+.|...|..+
T Consensus       163 -~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          163 -PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             -CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             -CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCC
Confidence             33456789999998776666666778899999876542  22222233345777753  44555555577787777543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=1.3e-05  Score=67.75  Aligned_cols=240  Identities=12%  Similarity=-0.008  Sum_probs=140.8

Q ss_pred             eeEEEecCC-CCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-c---CCcceEEEEE-------ecCCCCEEEEEcCCC-
Q 021121           63 VYDLAWSES-HDSLLIAAVADGSVKIYDTALPPTANPIRSLH-E---HTREVHSADY-------NPTRRDSFITSSWDD-  129 (317)
Q Consensus        63 v~~~~~~~~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~---~~~~v~~~~~-------~~~~~~~l~~~~~dg-  129 (317)
                      ...|+|.|. +.+++++-...+.|++.|++..    .+..+. .   .......++|       ++++. .|+++...+ 
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~----~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~  215 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR----MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVAIDYDG  215 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT----EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEEECCCT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC----EEEEEEccCccccCCCcEEEEeecccccCCCCC-EEEEEeCCCC
Confidence            567899983 4345555444467888887653    222221 1   2235889999       99987 555554433 


Q ss_pred             ------EEEEEEcCC-Ccee-----EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC-------CCCc------
Q 021121          130 ------TVKLWTVDR-PTSV-----RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-------EMGS------  184 (317)
Q Consensus       130 ------~v~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~------  184 (317)
                            .|.+++... +...     ..+.. -.....++.+|+++.++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  366666443 2221     22322 22456788999767888888888999999997       5543      


Q ss_pred             -----eee-ec-cCccceEEEEecCCCCcE-EEEEecCCcEEEEEccCCCccE---EEEecC---C------------Cc
Q 021121          185 -----TMI-IP-AHEFEILACDWNKYDDCL-IASASVDKSIKIWDVRNYRVPI---AVLNGH---G------------YA  238 (317)
Q Consensus       185 -----~~~-~~-~~~~~v~~i~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~---~~~~~~---~------------~~  238 (317)
                           ... +. ........++++| +++. +++-.....|+.++.......+   ..+.+.   .            ..
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~  373 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN  373 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred             ccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence                 111 11 1223457899999 8874 5555567789997765322111   122211   0            12


Q ss_pred             ee-EEEec-------CCCCeeEEeeecCCeEEEEecccccceeeeeecc------------------------cceeEeE
Q 021121          239 VR-KVKFS-------PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH------------------------TEFAVGV  286 (317)
Q Consensus       239 v~-~~~~~-------~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~------------------------~~~v~~~  286 (317)
                      .. .++..       +++. ++++=..+..|+.++. ++.  +..+.+.                        -....+|
T Consensus       374 P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G~--v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          374 PCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EGI--VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             EEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TCB--EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CCC--EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            33 34443       3444 5666566788999883 332  2233221                        1235689


Q ss_pred             EEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          287 DMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       287 ~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +++++++.++++=.....|+.++++.+
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            999853556666667788999988764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.77  E-value=7.8e-05  Score=65.61  Aligned_cols=162  Identities=7%  Similarity=0.025  Sum_probs=98.2

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      ..+.+++|++. ++.+..+-..      .++|..++++.... ...+. ...-.....+++.+.+.++.++-...+.|.+
T Consensus        40 ~~~~~ld~~~~-~~~ly~sD~~------~~~I~r~~~~g~~~-~~~v~-~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v  110 (619)
T 3s94_A           40 EDAAAVDFVFS-HGLIYWSDVS------EEAIKRTEFNKTES-VQNVV-VSGLLSPDGLACDWLGEKLYWTDSETNRIEV  110 (619)
T ss_dssp             SCEEEEEEETT-TTEEEEEETT------TTEEEEEEC------CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEEeC-CCEEEEEECC------CCeEEEEEccCCCc-eEEEE-eCCCCCcCeEEEEecCCEEEEEeCCCCEEEE
Confidence            35678889985 4555555443      67888888875421 11121 1222468889999876566666667789999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEE-cCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (317)
                      .+++..   .........-.....|++.|.+..++++- +..+.|...+++...........-...+.++++++++.+.+
T Consensus       111 ~~~dG~---~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~  187 (619)
T 3s94_A          111 SNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW  187 (619)
T ss_dssp             EETTSC---SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             EECCCC---CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEE
Confidence            998643   22122223344567899998766244443 22467888887644333333333456889999987566665


Q ss_pred             EEeCCCeEEEEeCCC
Q 021121          167 SASGDCTLRIWDVRE  181 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~  181 (317)
                      +-...+.|..+|+..
T Consensus       188 aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          188 ADAKLNFIHKSNLDG  202 (619)
T ss_dssp             EETTTCCEEEESSSC
T ss_pred             EeCCCCeEEEecCCC
Confidence            655667788887754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.75  E-value=4.5e-05  Score=61.62  Aligned_cols=274  Identities=7%  Similarity=-0.052  Sum_probs=143.8

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee--cCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF--DTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      ...+.++.|.+  ++...+++.       .|.|  |.........+.+...  .....+.++.|.+ + ..+++ +..+.
T Consensus        35 ~~~~~~v~~~~--~~~~~~~G~-------~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~  100 (327)
T 2xbg_A           35 TATILDMSFID--RHHGWLVGV-------NATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIV-GEPPI  100 (327)
T ss_dssp             SSCEEEEEESS--SSCEEEEET-------TTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEE-EETTE
T ss_pred             CCcEEEEEECC--CCcEEEEcC-------CCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEE-ECCCe
Confidence            45688888876  455555443       5554  3333333223333211  1234688999986 3 34444 45664


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe-eccccceEEEEEecCCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF-KEHAYCVYNATWNPRHSD  163 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  163 (317)
                      |.. ..+.++..+.+.....+...+..+.+.+++. .++++ .+|.|.. ..+.++.-... ......+..+.+.|+ +.
T Consensus       101 i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~-~~  175 (327)
T 2xbg_A          101 MLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPS-GE  175 (327)
T ss_dssp             EEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTT-SC
T ss_pred             EEE-ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCC-Cc
Confidence            433 2232323333222212345577888777665 55554 4564432 22234333322 234456889999987 66


Q ss_pred             eEEEEeCCCeEEE-EeCCCCCceeee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe----cCCC
Q 021121          164 VFCSASGDCTLRI-WDVREMGSTMII-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN----GHGY  237 (317)
Q Consensus       164 ~l~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~  237 (317)
                      +++.+. +|.+.. .|- .++.-..+ ......+..+.+.+ ++.+++. +.+|.+++.+...++. .....    .+..
T Consensus       176 ~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~  250 (327)
T 2xbg_A          176 YVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTP-DGRLWMI-VNGGKIAFSDPDNSEN-WGELLSPLRRNSV  250 (327)
T ss_dssp             EEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECT-TSCEEEE-ETTTEEEEEETTEEEE-ECCCBCTTSSCCS
T ss_pred             EEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECC-CCCEEEE-eCCceEEEecCCCCCe-eEeccCCcccCCc
Confidence            665554 455443 332 12222221 23445678888988 6766544 5578777764221111 11111    1223


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee---cccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD---HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      .+..+.+.+++. +++++ .+|.+ .+....++ ......   .....+..+.|.+  +..+++++.+|.|.-++-
T Consensus       251 ~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~-tW~~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          251 GFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQ-TWQQDVDVKKVPSNFYKILFFS--PDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             CEEEEEESSSSC-EEEEE-STTCE-EEESSTTS-SCEECGGGTTSSSCCCEEEEEE--TTEEEEECSTTEEEEECC
T ss_pred             ceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCc-ccEEcCccCCCCCCeEEEEEEC--CCceEEEcCCceEEEEcC
Confidence            578899998776 55554 46766 33334343 222222   1235678888875  456777778997766653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=1.1e-06  Score=78.20  Aligned_cols=240  Identities=7%  Similarity=-0.083  Sum_probs=129.8

Q ss_pred             eEEEecC-CCCCeEEEEEcCC-----------eEEEEEeCCCCCCCCceeecc-CCcceEEEEEecCCCCEEEEEc-CCC
Q 021121           64 YDLAWSE-SHDSLLIAAVADG-----------SVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSS-WDD  129 (317)
Q Consensus        64 ~~~~~~~-~~~~~l~~~~~dg-----------~i~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-~dg  129 (317)
                      ..+++.+ ++ .+++.|+.+.           .+.+||..+. ....+..+.. +.....++++..++. +++.|+ .+.
T Consensus       189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~  265 (656)
T 1k3i_A          189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAK  265 (656)
T ss_dssp             SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTT
T ss_pred             eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC-cEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCC
Confidence            3566777 55 6778777542           5788888765 3333333322 233344567778887 788877 456


Q ss_pred             EEEEEEcCCCceeEEeecccc-ceEEEEEecCCCCeEEEEe-CC-----CeEEEEeCCCCCceeeecc-----CccceEE
Q 021121          130 TVKLWTVDRPTSVRTFKEHAY-CVYNATWNPRHSDVFCSAS-GD-----CTLRIWDVREMGSTMIIPA-----HEFEILA  197 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~-----~~~~v~~  197 (317)
                      .+.+||..+.+-...-..+.. .-.+++..++ +++++.|+ .+     ..+.+||..+.+-.. +..     ....-..
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~  343 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQ  343 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTT
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCCCCCccee-CCCcccccccccccc
Confidence            899999987643221111111 1133455566 78888888 34     468999998653221 110     0000001


Q ss_pred             EEecCCCCcEEEEEecCC---------cEEEEEccCCCccEEEEecCC---------CceeEEEecCCCCeeEEeeecCC
Q 021121          198 CDWNKYDDCLIASASVDK---------SIKIWDVRNYRVPIAVLNGHG---------YAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       198 i~~~~~~~~~l~~~~~d~---------~i~v~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      ..+.. ++..++.++.++         .+..||..+... ......+.         ..-.++.|...+..+++.|+.++
T Consensus       344 ~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~  421 (656)
T 1k3i_A          344 GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  421 (656)
T ss_dssp             GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence            11222 455556665444         467888876542 11111111         12234555443334788887543


Q ss_pred             -----------eEEEEecccccceeeee--ecccce-eEeEEEEeccCCeEEEeecC-----------CcEEEEecCC
Q 021121          260 -----------TVCLWDFMVEDALVGRY--DHHTEF-AVGVDMSVLVEGLLASTGWD-----------ELVYVWQQGM  312 (317)
Q Consensus       260 -----------~i~vwd~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~s~~~d-----------g~i~~w~~~~  312 (317)
                                 .+.+||..+..-. ...  ..+... -.+++..|+ +++++.||.+           ..+.+||..+
T Consensus       422 ~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~mp~~R~~~~~~~l~~-g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          422 YQDSDATTNAHIITLGEPGTSPNT-VFASNGLYFARTFHTSVVLPD-GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             SSSSBCCCCEEEEECCSTTSCCEE-EECTTCCSSCCBSCEEEECTT-SCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCCcCCcceEEEcCCCCCCCee-EEccCCCCCCcccCCeEECCC-CCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence                       6888887765421 111  111111 223445566 7888888864           4678888754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=6.2e-05  Score=63.69  Aligned_cols=246  Identities=11%  Similarity=0.149  Sum_probs=141.7

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec--CCCCeeEEEe-------cCCCCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD--TADGVYDLAW-------SESHDSLLIAA   79 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~l~~~   79 (317)
                      ....|+|+|...+.|.++...      .+.|++.|++...  +..+....  .......++|       ++++. .|+++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~------~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyva  210 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDG------HKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVA  210 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEET------EEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEE
T ss_pred             CCCEEEEccCCCCEEEEEECC------CCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCC-EEEEE
Confidence            467899998324555555543      4678888887654  33332221  1235889999       99985 45554


Q ss_pred             EcCC-----e--EEEEEeCCCCCCCC---ceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC-------CCce-
Q 021121           80 VADG-----S--VKIYDTALPPTANP---IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-------RPTS-  141 (317)
Q Consensus        80 ~~dg-----~--i~v~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-------~~~~-  141 (317)
                      ...+     .  |.+++.........   ...+.. -.....++++|++..++++-..++.|..+|++       ++.. 
T Consensus       211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~  289 (496)
T 3kya_A          211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW  289 (496)
T ss_dssp             ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred             eCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence            4433     2  55555332111110   012221 12345678899666577788888999999998       5543 


Q ss_pred             ----------eEE-ee-ccccceEEEEEecCCCC-eEEEEeCCCeEEEEeCCCCC-ce---eeeccC---c---------
Q 021121          142 ----------VRT-FK-EHAYCVYNATWNPRHSD-VFCSASGDCTLRIWDVREMG-ST---MIIPAH---E---------  192 (317)
Q Consensus       142 ----------~~~-~~-~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~---~~~~~~---~---------  192 (317)
                                ... +. ........++|+|+ ++ ++++-+....|+.++..... .+   ..+.+.   .         
T Consensus       290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~  368 (496)
T 3kya_A          290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE  368 (496)
T ss_dssp             CCBGGGCTTTEEEEEECSSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred             cccccccccccceeEecCCCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence                      112 21 12345689999999 66 55555677889986654321 11   122111   0         


Q ss_pred             ---cceE-EEEec-------CCCCcEEEEEecCCcEEEEEccCCCccEEEEecCC------------------------C
Q 021121          193 ---FEIL-ACDWN-------KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG------------------------Y  237 (317)
Q Consensus       193 ---~~v~-~i~~~-------~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------~  237 (317)
                         .... .+...       + ++.++++-.....|+.++. ++.  +.++.+..                        .
T Consensus       369 a~f~~P~~gv~vd~~~~~~~~-~g~lyVaD~~N~rIr~i~~-~G~--v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~  444 (496)
T 3kya_A          369 ARMNNPCQGVFVKNPDYTGEE-EYDFYFVDRLNFCVRKVTP-EGI--VSTYAGRGASTSLADGNQWGTDDGDLREVARFR  444 (496)
T ss_dssp             CBCSSEEEEEEEECTTCCSSC-CEEEEEEEGGGTEEEEECT-TCB--EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred             cccCCCeEEEEEccccccccC-CCeEEEEECCCCEEEEEeC-CCC--EEEEecccccccccCccccccCCCCchhhhhcC
Confidence               1123 34443       3 5677777777788999983 332  44443220                        1


Q ss_pred             ceeEEEecCC-CCeeEEeeecCCeEEEEeccccc
Q 021121          238 AVRKVKFSPH-RRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       238 ~v~~~~~~~~-~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ....|+++++ +. ++++=..+..|+.+++....
T Consensus       445 ~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          445 DVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             SEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC
T ss_pred             CCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCc
Confidence            3567888886 54 55555566778888876543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.70  E-value=7.1e-05  Score=62.90  Aligned_cols=238  Identities=11%  Similarity=0.120  Sum_probs=136.2

Q ss_pred             ceeEEEEecC-CCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC---Ce
Q 021121            9 NGYSVKFSPF-YESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD---GS   84 (317)
Q Consensus         9 ~v~~~~~~p~-~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~   84 (317)
                      ....++|+|+ .++.+.++-.       .+.|+.++.....  ...+  .........+++++++. ++++....   ..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~-------~~~I~~id~~~g~--v~~~--~~~~~~P~giavd~dG~-lyVad~~~~~~~~  207 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQ-------RDAFRHVDFVNQY--VDIK--TTNIGQCADVNFTLNGD-MVVVDDQSSDTNT  207 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECB-------TSCEEEEETTTTE--EEEE--CCCCSCEEEEEECTTCC-EEEEECCSCTTSE
T ss_pred             CCceEEEccccCCCEEEEEeC-------CCCEEEEECCCCE--EEEe--ecCCCCccEEEECCCCC-EEEEcCCCCcccc
Confidence            4568899984 3467666643       2689999886543  2222  23445688999999985 55544321   11


Q ss_pred             -EEEEEeCCCCCCCCceeeccCCcceEEEEEec-CCCCEEEEEcCCCEEEEEEcCCCceeEEe-ec-cccceEEEEEecC
Q 021121           85 -VKIYDTALPPTANPIRSLHEHTREVHSADYNP-TRRDSFITSSWDDTVKLWTVDRPTSVRTF-KE-HAYCVYNATWNPR  160 (317)
Q Consensus        85 -i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~-~~~~v~~~~~~~~  160 (317)
                       +...+....  ......+. .-.....+++.| ++. ++++-..++.|+.+|..++.....+ .. .......++|+|+
T Consensus       208 gv~~~~~~~~--~~~~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          208 GIYLFTRASG--FTERLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             EEEEECGGGT--TCCEEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred             eEEEEECCCC--eecccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence             222332211  11111111 223456688999 554 6666667889999999877652332 21 1223457999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCC--CCc--eeeeccC---------------ccceEEEEe---------cCCCCcEEEEE
Q 021121          161 HSD-VFCSASGDCTLRIWDVRE--MGS--TMIIPAH---------------EFEILACDW---------NKYDDCLIASA  211 (317)
Q Consensus       161 ~~~-~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~---------------~~~v~~i~~---------~~~~~~~l~~~  211 (317)
                       ++ ++++-...+.|+.++...  +..  ...+.+.               -.....+++         .+ +++++++-
T Consensus       284 -G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD  361 (433)
T 4hw6_A          284 -GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCD  361 (433)
T ss_dssp             -SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEE
T ss_pred             -CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEE
Confidence             55 666666678899988652  211  1112111               112566888         55 77777777


Q ss_pred             ecCCcEEEEEccCCCccEEEEecCC------------------CceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          212 SVDKSIKIWDVRNYRVPIAVLNGHG------------------YAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      ...+.|+.++. ++.  +..+.+..                  .....|+++|....++++=..++.|+.++++
T Consensus       362 ~~n~~I~~~~~-~G~--v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          362 RDSHTVRVLTP-EGR--VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTTEEEEECT-TSE--EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEECC-CCC--EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            77788999985 332  33333211                  1256788883333355555556677776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.61  E-value=4.5e-07  Score=80.96  Aligned_cols=222  Identities=9%  Similarity=-0.006  Sum_probs=128.9

Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC----CceeEEeeccccceEEEEE
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR----PTSVRTFKEHAYCVYNATW  157 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~  157 (317)
                      .+.|+..++...   .. ..+......+..++|.+.+..++++-...+.|+.+++..    ......+......+..|++
T Consensus       385 ~~~I~~id~~~~---~~-~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRS---EY-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSC---CE-ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCC---cc-eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            356777776543   11 111222345667899987663444445668899999875    2222222222234567888


Q ss_pred             ecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC-CcEEEEEccCCCccEEEEecCC
Q 021121          158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD-KSIKIWDVRNYRVPIAVLNGHG  236 (317)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~  236 (317)
                      .+.+++++++-...+.|.++++........+.........++++|..+.++++-... +.|.++++..... .......-
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l  539 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENI  539 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSC
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCC
Confidence            866566776666778999999875543333332234467889998445555544333 6788888764332 22222223


Q ss_pred             CceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee--cccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          237 YAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD--HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       237 ~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ...+.|+|+|++..++++-...+.|..+++...... ....  .......+|++..  +.++++....+.|..++..
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETT
T ss_pred             CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEcc
Confidence            356789999987766666667788999998653311 1111  1112344566643  4566666667888888753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.55  E-value=0.00015  Score=59.22  Aligned_cols=227  Identities=12%  Similarity=0.162  Sum_probs=123.3

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEecCC---CCCeEEEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWSES---HDSLLIAAV   80 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~~l~~~~   80 (317)
                      .....++|.|  +++++++..       .|+|++++ . ..  ...+...    ........|+|+|+   +..+.++-.
T Consensus        31 ~~P~~ia~~p--dG~l~V~e~-------~g~I~~i~-~-g~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           31 EVPWALAFLP--DGGMLIAER-------PGRIRLFR-E-GR--LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             SCEEEEEECT--TSCEEEEET-------TTEEEEEE-T-TE--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCceEEEEcC--CCeEEEEeC-------CCeEEEEE-C-CC--ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            3567899999  677777654       68999998 2 22  2222111    22457899999998   433444443


Q ss_pred             cC-----CeEEEEEeCCCCC--CCC-ceeec---cCCcceEEEEEecCCCCEEEEEcC-------------CCEEEEEEc
Q 021121           81 AD-----GSVKIYDTALPPT--ANP-IRSLH---EHTREVHSADYNPTRRDSFITSSW-------------DDTVKLWTV  136 (317)
Q Consensus        81 ~d-----g~i~v~~~~~~~~--~~~-~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~iwd~  136 (317)
                      ..     +.|..++......  .+. +..+.   ........++|.|+|. ++++.+.             .|.|..++.
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~  176 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTP  176 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcC
Confidence            32     5677787763210  011 11122   1112235799999996 5555432             257777776


Q ss_pred             CCC------------ceeEEeeccccceEEEEEecCCCCeEEEEeCCCe--------EEEEeCCCCC-------------
Q 021121          137 DRP------------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT--------LRIWDVREMG-------------  183 (317)
Q Consensus       137 ~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~~~-------------  183 (317)
                      +..            .....+...-.....++|+|+++.++++-.....        |.+.  ..+.             
T Consensus       177 dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          177 EGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGND  254 (352)
T ss_dssp             TSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCC
T ss_pred             CCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCC
Confidence            531            1111121112336789999954676665433332        3333  2221             


Q ss_pred             -----ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc-----EEEEecCCCceeEEEecCCCCeeEE
Q 021121          184 -----STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-----IAVLNGHGYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       184 -----~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~  253 (317)
                           +...+. +......+++.  ++.++++....+.|...++......     ...+......+..+++.|+|. +++
T Consensus       255 ~~~~~p~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv  330 (352)
T 2ism_A          255 PRYRDPLYFWP-QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYV  330 (352)
T ss_dssp             TTSCCCSEECT-TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEE
T ss_pred             CCCcCCeEecC-CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEE
Confidence                 122222 22234567773  6777777767778888887654321     122222235688999999997 444


Q ss_pred             e
Q 021121          254 S  254 (317)
Q Consensus       254 ~  254 (317)
                      +
T Consensus       331 ~  331 (352)
T 2ism_A          331 T  331 (352)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.47  E-value=0.00027  Score=56.14  Aligned_cols=159  Identities=9%  Similarity=0.187  Sum_probs=107.0

Q ss_pred             CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-------ccceEEEEE---ecCCCCeEEEEe------
Q 021121          106 TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-------AYCVYNATW---NPRHSDVFCSAS------  169 (317)
Q Consensus       106 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~~l~~~~------  169 (317)
                      ..--.+++|.+....++++.-..++|..||...+.........       ...+..+.|   .|+ +.++++..      
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence            3344568898866635555557999999999765443332111       124689999   577 77776543      


Q ss_pred             -------CCCeEEEEeCC---CCCceeeecc-------------CccceEEEEecCCCCcEEEEEecC-CcEEEEEccCC
Q 021121          170 -------GDCTLRIWDVR---EMGSTMIIPA-------------HEFEILACDWNKYDDCLIASASVD-KSIKIWDVRNY  225 (317)
Q Consensus       170 -------~dg~i~i~d~~---~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~~~  225 (317)
                             .+..|..||+.   +++.+....-             .......++..+ +++..++++.. +.|..++....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC
Confidence                   26789999999   7766654431             112478999999 99999999988 88888876643


Q ss_pred             CccEEEE--ec----CCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          226 RVPIAVL--NG----HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       226 ~~~~~~~--~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .  +..+  ..    .....+.|+++|++..+++..+ .|.+..+|+...
T Consensus       170 ~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 T--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP  216 (334)
T ss_dssp             C--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred             E--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence            2  2221  11    1223679999999985555545 999999998853

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.41  E-value=0.00031  Score=56.32  Aligned_cols=194  Identities=11%  Similarity=0.168  Sum_probs=119.8

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC----CCC--E-EEEEcC--CCEEEEEEcC--CCcee
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT----RRD--S-FITSSW--DDTVKLWTVD--RPTSV  142 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-l~~~~~--dg~v~iwd~~--~~~~~  142 (317)
                      .+++.....+-+.+||+ .+   +.+..+..  +.++.+..-|.    ++.  + +++...  +++|.+|++.  ++ .+
T Consensus        41 s~ii~t~k~~gL~Vydl-~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l  113 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TL  113 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CE
T ss_pred             cEEEEEcCCCCEEEEcC-CC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ce
Confidence            45666667788999998 34   55555543  56777776653    110  2 333444  5899999773  33 34


Q ss_pred             EEeec------cc-cceEEEEE--ecCCCC-eEEEEeCCCeEEEEeCCC-------CCceeeeccCccceEEEEecCCCC
Q 021121          143 RTFKE------HA-YCVYNATW--NPRHSD-VFCSASGDCTLRIWDVRE-------MGSTMIIPAHEFEILACDWNKYDD  205 (317)
Q Consensus       143 ~~~~~------~~-~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~i~~~~~~~  205 (317)
                      ..+..      .. ..+..+++  +|..+. ++++...+|.+..|++..       .+.++.+.. ...+..+...+ ..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd-~~  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD-EY  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET-TT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC-CC
Confidence            44421      11 45677777  675344 677888899999999832       244556653 45678888888 77


Q ss_pred             cEEEEEecCCcEEEEEccCCC----ccEEEEe-cC-CCceeEEEe--cCCCC-eeEEeeecCCeEEEEecccccceeeee
Q 021121          206 CLIASASVDKSIKIWDVRNYR----VPIAVLN-GH-GYAVRKVKF--SPHRR-NLLASCSYDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       206 ~~l~~~~~d~~i~v~d~~~~~----~~~~~~~-~~-~~~v~~~~~--~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~  276 (317)
                      ..|+.+-++..|..|+.+...    ..+.... ++ ...+..|++  .++++ ++++++-.++++.+||.......+..+
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            788888888777777754211    1232321 11 236778887  45555 445555467899999986333344444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.37  E-value=0.0018  Score=61.06  Aligned_cols=288  Identities=11%  Similarity=0.078  Sum_probs=146.9

Q ss_pred             cCcceeEEEEecCCC-----CeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecC-CCCCeEEEE
Q 021121            6 TPFNGYSVKFSPFYE-----SRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE-SHDSLLIAA   79 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~-----~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~   79 (317)
                      .+..|.|+++.|..+     ..++++...      |+.|+|++++.-+  ..............++.+.. .+..+|..|
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~------d~tv~I~sL~~l~--~~~~~~L~~~~~p~si~l~~~~~~~~L~ig  623 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWT------DISARILKLPSFE--LLHKEMLGGEIIPRSILMTTFESSHYLLCA  623 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETT------TTEEEEEETTTCC--EEEEEECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECC------CCEEEEEECCCCC--eEEEEECCCCCCCcEEEEEEeCCCcEEEEE
Confidence            456799999987432     344444433      8899999997533  11122222222334443331 233588999


Q ss_pred             EcCCeEEEEEeCCCCCCCCc--e-eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce-EEE
Q 021121           80 VADGSVKIYDTALPPTANPI--R-SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV-YNA  155 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~  155 (317)
                      -.||.+.-+.++.. .....  + .+-+ ..++.-..+...+...+++.+. ....++.-+ ++.... .-.-..+ ...
T Consensus       624 l~dG~l~~~~~d~~-tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~l~~s-~l~~~~v~~~~  698 (1158)
T 3ei3_A          624 LGDGALFYFGLNIE-TGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HKLVFS-NVNLKEVNYMC  698 (1158)
T ss_dssp             ETTSEEEEEEECTT-TCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS-SCEEEEESS-SSEEEE-EBSSSCCCEEE
T ss_pred             eCCCeEEEEEEcCC-CCccccceeEEcC-CCceEEEEEeeCCceeEEEECC-CCEEEEEcC-CceEEe-ccChHHhceEe
Confidence            99999888777532 11111  1 1122 3455555555444434444443 333344332 222111 1111123 233


Q ss_pred             EEecCC-CCeEEEEeCCCeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEecC------------------
Q 021121          156 TWNPRH-SDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVD------------------  214 (317)
Q Consensus       156 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------------------  214 (317)
                      .|+... ++-++..+ ++.++|..+.+...  .++++ ....+..++++| ..+.++.+..+                  
T Consensus       699 ~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  775 (1158)
T 3ei3_A          699 PLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSAS  775 (1158)
T ss_dssp             EECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred             ccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhh
Confidence            354321 23444333 45688888754432  22232 344677888888 44444333211                  


Q ss_pred             -------------------------------CcEEEEEccCCCccEEEEe-cCCCceeEEE---ecCCCCeeEEeee---
Q 021121          215 -------------------------------KSIKIWDVRNYRVPIAVLN-GHGYAVRKVK---FSPHRRNLLASCS---  256 (317)
Q Consensus       215 -------------------------------~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~~l~~~~---  256 (317)
                                                     +.|++.|..+.+. +..+. .....+.+++   |..+.+.+++.|.   
T Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~-i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~  854 (1158)
T 3ei3_A          776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEV-LHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMV  854 (1158)
T ss_dssp             HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCE-EEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEEC
T ss_pred             hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeE-EEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeec
Confidence                                           2356666655542 22222 2233444444   4433334777776   


Q ss_pred             -------cCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          257 -------YDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       257 -------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                             ..|.|.+|++...+..........+++++++--.  +.++++.  ..+|++|++..++
T Consensus       855 ~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~--g~Lla~i--g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          855 YPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN--GKLLASI--NSTVRLYEWTTEK  915 (1158)
T ss_dssp             CTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET--TEEEEEE--TTEEEEEEECTTS
T ss_pred             CCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC--CEEEEEc--CCEEEEEECCCCc
Confidence                   3478999998754322222223467788876442  5444433  4789999998654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.35  E-value=0.00022  Score=56.71  Aligned_cols=199  Identities=6%  Similarity=0.104  Sum_probs=121.4

Q ss_pred             eeEEEecCCCCCeEEEEE-cCCeEEEEEeCCCCCCCCceeecc----C--CcceEEEEE---ecCCCCEEEEEc------
Q 021121           63 VYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHE----H--TREVHSADY---NPTRRDSFITSS------  126 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~~l~~~~------  126 (317)
                      -.+++|.+... .|..++ ..++|..|+...+. ...+ .+..    .  ...+..+.|   .|++. ++++..      
T Consensus        15 PE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~   90 (334)
T 2p9w_A           15 PEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQS-HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFN   90 (334)
T ss_dssp             CSCEEEETTTT-EEEEEETTTTEEEEECTTTCC-EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTC
T ss_pred             CcCccCcCCCC-EEEEEeccCCEEEEEcCCCCe-EEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccccccc
Confidence            45688988654 555555 78999999976331 1111 2221    1  124578999   58765 555433      


Q ss_pred             -------CCCEEEEEEcC---CCceeEEeec--c-----------ccceEEEEEecCCCCeEEEEeCC-CeEEEEeCCCC
Q 021121          127 -------WDDTVKLWTVD---RPTSVRTFKE--H-----------AYCVYNATWNPRHSDVFCSASGD-CTLRIWDVREM  182 (317)
Q Consensus       127 -------~dg~v~iwd~~---~~~~~~~~~~--~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  182 (317)
                             .+..|..+|+.   +++.+....-  .           ......++..++ ++..++++.. +.|...+....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-GNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-SCEEEEEEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-CCEEEeCCCCCCeEEEEeCCCC
Confidence                   26789999999   7777665541  1           124889999998 8888888888 88888887643


Q ss_pred             Cceeeec------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe--cC---CCceeEE-EecCCCCe
Q 021121          183 GSTMIIP------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--GH---GYAVRKV-KFSPHRRN  250 (317)
Q Consensus       183 ~~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~---~~~v~~~-~~~~~~~~  250 (317)
                       ....+.      ......+.|+++| +++.|++....+.+..+|++..........  +.   -.....| .--.+|+-
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             -EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence             222221      1122367899999 888777776699999999885332001111  21   1123333 33336663


Q ss_pred             eEEeeecCCeEEEEeccc
Q 021121          251 LLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       251 ~l~~~~~d~~i~vwd~~~  268 (317)
                      +|++....+.+.+.+...
T Consensus       248 llV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          248 VLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEETTEEEEEECSST
T ss_pred             EEEEcCCCCEEEEECCCC
Confidence            466665666666655433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.35  E-value=0.00067  Score=55.32  Aligned_cols=229  Identities=10%  Similarity=0.076  Sum_probs=123.1

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---ccCCcceEEEEEecC---CCCEEEEEcCC-----
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---HEHTREVHSADYNPT---RRDSFITSSWD-----  128 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~d-----  128 (317)
                      -.....++|.|++.  ++++..+|.|.+++ . + ....+..+   .........++++|+   +..++++-...     
T Consensus        30 l~~P~~ia~~pdG~--l~V~e~~g~I~~i~-~-g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGG--MLIAERPGRIRLFR-E-G-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSC--EEEEETTTEEEEEE-T-T-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCe--EEEEeCCCeEEEEE-C-C-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            34567999999983  45556779999988 2 2 11211111   122456789999998   44244443322     


Q ss_pred             CEEEEEEcCCCce-----e-EEee---ccccceEEEEEecCCCCeEEEEeC-------------CCeEEEEeCCCC----
Q 021121          129 DTVKLWTVDRPTS-----V-RTFK---EHAYCVYNATWNPRHSDVFCSASG-------------DCTLRIWDVREM----  182 (317)
Q Consensus       129 g~v~iwd~~~~~~-----~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----  182 (317)
                      +.|..++...+..     + ..+.   ........++|.|+ +.+.++.+.             .|.|.-++....    
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence            6788888775421     1 1122   11123468999998 666666432             256777776531    


Q ss_pred             ---------CceeeeccCccceEEEEecCCCCcEEEEEecCCc--------EEEEEccC---------------CCccEE
Q 021121          183 ---------GSTMIIPAHEFEILACDWNKYDDCLIASASVDKS--------IKIWDVRN---------------YRVPIA  230 (317)
Q Consensus       183 ---------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--------i~v~d~~~---------------~~~~~~  230 (317)
                               .....-.++. ....++|+|.++.++++-.....        |.+.....               ...+..
T Consensus       184 npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence                     1111111232 25678899855665555433333        33332111               012233


Q ss_pred             EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce-----eeeeecccceeEeEEEEeccCCeEEEe
Q 021121          231 VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-----VGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      .+..| .....++| .++. ++++.-..+.|...++......     ...+......+..+++.|+ +.++++.
T Consensus       263 ~~~~~-~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd-G~lyv~~  332 (352)
T 2ism_A          263 FWPQG-FPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD-GALYVTT  332 (352)
T ss_dssp             ECTTC-CCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT-SCEEEEE
T ss_pred             ecCCC-CCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC-CcEEEEE
Confidence            33222 34567787 3554 5666556677888777654321     1122122356889999998 5655554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.35  E-value=0.00049  Score=55.24  Aligned_cols=187  Identities=8%  Similarity=0.111  Sum_probs=116.0

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC---CCC---eEEEEeC---CCeEEEEeCC-CCCceeeecc
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR---HSD---VFCSASG---DCTLRIWDVR-EMGSTMIIPA  190 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~i~d~~-~~~~~~~~~~  190 (317)
                      +++.....+-+.+||+ +++.+..+..  +.++.+..-|.   ++.   ++++...   +++|.+|++. ....+..+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            6777777889999999 7888888753  55777776663   011   3333333   5789999763 2223444421


Q ss_pred             ------Cc-cceEEEEe--cCCCCc-EEEEEecCCcEEEEEccCC------CccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          191 ------HE-FEILACDW--NKYDDC-LIASASVDKSIKIWDVRNY------RVPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       191 ------~~-~~v~~i~~--~~~~~~-~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                            .. ..+..+++  +|..+. ++++...+|.+..|++...      ...+..+.. .+.+-.+...+... .|+.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g-~Lyv  196 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG-RLYI  196 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT-EEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC-eEEE
Confidence                  11 44566776  774453 6777888899999998432      122444443 45778889998777 5888


Q ss_pred             eecCCeEEEEecccc----cceeeeee-c-ccceeEeEEEEe--ccCCeEEEee-cCCcEEEEecCC
Q 021121          255 CSYDMTVCLWDFMVE----DALVGRYD-H-HTEFAVGVDMSV--LVEGLLASTG-WDELVYVWQQGM  312 (317)
Q Consensus       255 ~~~d~~i~vwd~~~~----~~~~~~~~-~-~~~~v~~~~~~~--~~~~~l~s~~-~dg~i~~w~~~~  312 (317)
                      +-++..|..++.+..    ..++.... + -...+..|++-+  ++..+|++++ .++...+||...
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            888876666664421    12333332 2 223688888854  3223455444 678999999863

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.32  E-value=0.0014  Score=57.63  Aligned_cols=227  Identities=3%  Similarity=-0.076  Sum_probs=134.3

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      .+.|+..++........ ......-..+.+++|.+.++.++++-...+.|..++++..   .........-.....+++.
T Consensus       325 ~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---~~~~v~~~~~~~p~GlAvD  400 (619)
T 3s94_A          325 RTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---GSQFVVTAQIAHPDGIAVD  400 (619)
T ss_dssp             SSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCCCEEEEE
T ss_pred             ccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---ccEEEEECCCCCcCceEEe
Confidence            45777777765542111 1111223457889999866455555556788888887643   2222223333466788898


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe-CCCeEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      ..+.+++.+-+..+.|.+.++............-.....+++.|..+.++++-. ..+.|...++............-..
T Consensus       401 ~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~  480 (619)
T 3s94_A          401 WVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGW  480 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             cccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCC
Confidence            766646667677899999998755332222333456899999997565655542 2467877777644333233333345


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      .+.+++++..++++++-+..+.|..+++..... .......-.....++...+  +++++-...+.|...|..++
T Consensus       481 P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred             CeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence            788999984555556655667899999865443 2222222222345666533  35555445566666666554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.12  E-value=0.0023  Score=52.20  Aligned_cols=233  Identities=10%  Similarity=0.050  Sum_probs=125.0

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee----cCCCCeeEEEecCC---CCCeEEEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF----DTADGVYDLAWSES---HDSLLIAAV   80 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~~l~~~~   80 (317)
                      .....++|.|  +++++++..       +|+|++++.+  . . ..+...    ........|+++|+   +..+.++-.
T Consensus        29 ~~P~~ia~~p--dG~l~V~e~-------~g~I~~~d~~--G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           29 EVPWSIAPLG--GGRYLVTER-------PGRLVLISPS--G-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             SCEEEEEEEE--TTEEEEEET-------TTEEEEECSS--C-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCeEEEEcC--CCeEEEEeC-------CCEEEEEeCC--C-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            4567899999  678777754       6899988632  2 1 222211    22356899999997   433444433


Q ss_pred             c---C----CeEEEEEeCCCC-C---CCCc-eeecc-CCcceEEEEEecCCCCEEEEEcC-------------CCEEEEE
Q 021121           81 A---D----GSVKIYDTALPP-T---ANPI-RSLHE-HTREVHSADYNPTRRDSFITSSW-------------DDTVKLW  134 (317)
Q Consensus        81 ~---d----g~i~v~~~~~~~-~---~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~iw  134 (317)
                      .   +    ..|..|+..... .   .+.+ ..+.. .......+.|.|+|. ++++.+.             .|.|..+
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEE
Confidence            2   2    567777765321 0   0111 11211 111245689999997 5555432             2567766


Q ss_pred             EcCCCc-------eeEEeeccccceEEEEEecCCCCeEEEEeCCC---eEEEEeCCC--------C--------Cceeee
Q 021121          135 TVDRPT-------SVRTFKEHAYCVYNATWNPRHSDVFCSASGDC---TLRIWDVRE--------M--------GSTMII  188 (317)
Q Consensus       135 d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~--------~--------~~~~~~  188 (317)
                      +.+..-       ....+...-.....++|+|+.+.++++-....   .|.+...-.        +        .+...+
T Consensus       175 ~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  254 (354)
T 3a9g_A          175 DEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT  254 (354)
T ss_dssp             CTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence            664320       01112111233678999995466665533222   233332110        0        122222


Q ss_pred             ccCccceEEEEecC------CCCcEEEEEecCCcEEEEEccCCCccE--EEEe-cCCCceeEEEecCCCCeeEEee
Q 021121          189 PAHEFEILACDWNK------YDDCLIASASVDKSIKIWDVRNYRVPI--AVLN-GHGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       189 ~~~~~~v~~i~~~~------~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~  255 (317)
                      .........+++..      .++.++++....+.|...++.......  ..+. .....+..+++.|+|. ++++.
T Consensus       255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~  329 (354)
T 3a9g_A          255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILIST  329 (354)
T ss_dssp             TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEE
T ss_pred             CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEE
Confidence            11223466777731      267777777777789888887532211  2222 2245688999999997 45444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.10  E-value=0.0024  Score=51.78  Aligned_cols=205  Identities=10%  Similarity=0.125  Sum_probs=116.8

Q ss_pred             eeEEEEecCCCCeEEEEEecccc------cccCceEEEEecCCCCCcceeeeeec-----CCCCeeEEEecC--CCCCeE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFG------ILGNGRVHVLDLSPAAPALTELVAFD-----TADGVYDLAWSE--SHDSLL   76 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~------~~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~~~l   76 (317)
                      .-.+...|  ++.+.++++.-+.      ...+|.|.++|.++.....+.+...+     ..-....+.+.+  ++..+|
T Consensus        52 ~EDi~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           52 SEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCEEEECT--TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            45667777  6777777631110      01389999999985443344443322     123567777765  343344


Q ss_pred             EEE-Ec--CCeEEEEEeCCCCC-CCCceeeccC-CcceEEEEEecCCCCEEEEEc-----------------CCCEEEEE
Q 021121           77 IAA-VA--DGSVKIYDTALPPT-ANPIRSLHEH-TREVHSADYNPTRRDSFITSS-----------------WDDTVKLW  134 (317)
Q Consensus        77 ~~~-~~--dg~i~v~~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iw  134 (317)
                      +++ ..  +..|.+|+++.... ...+..+.+. -...+.+.+.++|. ++++..                 ..|.|..+
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            444 33  46889999876422 1222233322 24578999999987 555543                 13566666


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce---eeeccCccceEEEEecCCCCcEEEEE
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST---MIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      |.  ++ ...+...-...+.++|+|++..+.++-+..+.|..|++.....+   ..+ ......-.+++.+.++++.+++
T Consensus       209 d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          209 SP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             CT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             EC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence            65  33 33333334557999999994445555567889999998643222   223 2234556777776227776655


Q ss_pred             ecC-CcEEEEE
Q 021121          212 SVD-KSIKIWD  221 (317)
Q Consensus       212 ~~d-~~i~v~d  221 (317)
                      ..+ +.|..||
T Consensus       285 ~~~g~~v~~~~  295 (355)
T 3sre_A          285 HPNGMRIFFYD  295 (355)
T ss_dssp             ESCHHHHHSCC
T ss_pred             cCCceEEEEEC
Confidence            533 3444444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.03  E-value=0.0034  Score=50.92  Aligned_cols=186  Identities=8%  Similarity=0.067  Sum_probs=106.6

Q ss_pred             eEEEEEecCCCCEEEEE------------cCCCEEEEEEcCCCc-eeEEe--ec-----cccceEEEEEecC-CC--CeE
Q 021121          109 VHSADYNPTRRDSFITS------------SWDDTVKLWTVDRPT-SVRTF--KE-----HAYCVYNATWNPR-HS--DVF  165 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~------------~~dg~v~iwd~~~~~-~~~~~--~~-----~~~~v~~~~~~~~-~~--~~l  165 (317)
                      ...+...|+|. .++++            ..+|.|.++|+++.. ....+  .+     .......+.+.++ ++  .++
T Consensus        52 ~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44556677654 33333            268999999997431 12222  22     2346788888663 13  244


Q ss_pred             EEEeC--CCeEEEEeCCCCCcee----eeccC-ccceEEEEecCCCCcEEEEEe-----------------cCCcEEEEE
Q 021121          166 CSASG--DCTLRIWDVREMGSTM----IIPAH-EFEILACDWNKYDDCLIASAS-----------------VDKSIKIWD  221 (317)
Q Consensus       166 ~~~~~--dg~i~i~d~~~~~~~~----~~~~~-~~~v~~i~~~~~~~~~l~~~~-----------------~d~~i~v~d  221 (317)
                      ++-..  +..+.+|++.......    .+.+. -...+.+.+.+ ++.++++..                 ..|.|..+|
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            44333  4678888776543222    22221 23468888988 888777654                 124566666


Q ss_pred             ccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--eeeeecccceeEeEEEEe-ccCCeEEE
Q 021121          222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--VGRYDHHTEFAVGVDMSV-LVEGLLAS  298 (317)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~s  298 (317)
                      ..  +  ...+...-...+.++|+|+++.++++-+..+.|..|++.....+  ...+ ...+..-.+++.+ + +++.++
T Consensus       210 ~~--~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~-G~lwva  283 (355)
T 3sre_A          210 PN--D--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT-GDLWVG  283 (355)
T ss_dssp             TT--C--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT-CCEEEE
T ss_pred             CC--e--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC-CcEEEE
Confidence            53  2  22222222356899999999976666667889999998643212  1122 2245567788887 4 566665


Q ss_pred             eecC
Q 021121          299 TGWD  302 (317)
Q Consensus       299 ~~~d  302 (317)
                      +..+
T Consensus       284 ~~~~  287 (355)
T 3sre_A          284 CHPN  287 (355)
T ss_dssp             EESC
T ss_pred             ecCC
Confidence            5433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.00  E-value=0.0021  Score=51.12  Aligned_cols=223  Identities=9%  Similarity=0.066  Sum_probs=109.7

Q ss_pred             CeEEEEEcC--CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC----CEEEEEEcCCCceeEE--e
Q 021121           74 SLLIAAVAD--GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD----DTVKLWTVDRPTSVRT--F  145 (317)
Q Consensus        74 ~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~--~  145 (317)
                      .+++.|+.+  ..+.+||.... ....+..+.........+.+  ++. +++.|+.+    ..+.+||+.+.+-...  +
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            466666543  56888887654 22222222211122222222  344 67777654    6788999887643222  1


Q ss_pred             eccccceEEEEEecCCCCeEEEEeCC------CeEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEEec----
Q 021121          146 KEHAYCVYNATWNPRHSDVFCSASGD------CTLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASASV----  213 (317)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~----  213 (317)
                      .........+.+  + +.+++.|+.+      ..+.+||+.+.+-..  .+....... +++..  ++.+++.|+.    
T Consensus        89 p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~  162 (306)
T 3ii7_A           89 PTPRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEA--NGLIYVCGGSLGNN  162 (306)
T ss_dssp             SSCCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEECCEESCT
T ss_pred             CccccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEE--CCEEEEECCCCCCC
Confidence            111111222222  3 6777777765      458899988753211  111111111 22222  5677777764    


Q ss_pred             -----CCcEEEEEccCCCccEEEEecCCC--ceeEEEecCCCCeeEEeeecC-----CeEEEEecccccc-eeeeeeccc
Q 021121          214 -----DKSIKIWDVRNYRVPIAVLNGHGY--AVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVEDA-LVGRYDHHT  280 (317)
Q Consensus       214 -----d~~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~-~~~~~~~~~  280 (317)
                           -..+.+||..+.+  -..+.....  .-.+++.. +++ +++.|+.+     ..+.+||+.+.+- .+..+....
T Consensus       163 ~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             TTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred             CcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence                 3458899987753  222221111  11122222 444 67777653     3588899877641 111111111


Q ss_pred             ceeEeEEEEeccCCeEEEeecC-----CcEEEEecCCC
Q 021121          281 EFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGMD  313 (317)
Q Consensus       281 ~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~  313 (317)
                      .....+.+  + +.+++.||.+     ..+.+||+..+
T Consensus       239 ~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          239 VTVKCAAV--G-SIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             SCCEEEEE--T-TEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             cceeEEEE--C-CEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            11112222  3 6788888854     46778887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.96  E-value=0.0019  Score=51.22  Aligned_cols=221  Identities=12%  Similarity=0.120  Sum_probs=108.0

Q ss_pred             CeEEEEE-cC-----CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCc--
Q 021121           74 SLLIAAV-AD-----GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPT--  140 (317)
Q Consensus        74 ~~l~~~~-~d-----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~--  140 (317)
                      .+++.|+ .+     ..+.+||..+. ....+..+.........+.  .++. +++.|+.+     ..+.+||+.+.+  
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDR-IYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTE-EEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCE-EEEEcCCCCCccCceEEEEECCCCCCC
Confidence            4555665 32     35778887653 2222222221111112222  2344 67777654     468999988765  


Q ss_pred             -eeEE--eeccccceEEEEEecCCCCeEEEEeCC-----CeEEEEeCCCCCce--eeeccCccceEEEEecCCCCcEEEE
Q 021121          141 -SVRT--FKEHAYCVYNATWNPRHSDVFCSASGD-----CTLRIWDVREMGST--MIIPAHEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       141 -~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~  210 (317)
                       -...  +.........+.+  + +.+++.|+.+     ..+.+||+.+.+-.  ..+....... +++..  ++.+++.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~  165 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVA--SGVIYCL  165 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEE--TTEEEEE
T ss_pred             eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEE--CCEEEEE
Confidence             2221  1111111222222  3 6777777654     35889998765322  2222111111 22222  5678888


Q ss_pred             EecC-----CcEEEEEccCCCccEEEEecCC---CceeEEEecCCCCeeEEeeecC-----CeEEEEecccccc-eeeee
Q 021121          211 ASVD-----KSIKIWDVRNYRVPIAVLNGHG---YAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVEDA-LVGRY  276 (317)
Q Consensus       211 ~~~d-----~~i~v~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~-~~~~~  276 (317)
                      |+.+     ..+.+||..+.+  -..+....   .....+.+  +++ +++.|+.+     ..+.+||+.+.+- .+..+
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  240 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM  240 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence            7755     358899987653  22222111   11122222  344 77777764     4688999887651 11111


Q ss_pred             ecccceeEeEEEEeccCCeEEEeecC-----CcEEEEecCC
Q 021121          277 DHHTEFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGM  312 (317)
Q Consensus       277 ~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~  312 (317)
                      ....... +++ ..+ +.+++.||.+     ..+.+||+..
T Consensus       241 p~~r~~~-~~~-~~~-~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          241 TTPRCYV-GAT-VLR-GRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             SSCCBSC-EEE-EET-TEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             CCcccce-eEE-EEC-CEEEEEcCcCCCcccccEEEEcCCC
Confidence            1111111 122 223 6677888765     3567777765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.94  E-value=0.002  Score=51.15  Aligned_cols=183  Identities=13%  Similarity=0.092  Sum_probs=90.6

Q ss_pred             CCCCEEEEEcCC-----CEEEEEEcCCCceeEE--eeccccceEEEEEecCCCCeEEEEeCCC-----eEEEEeCCCCCc
Q 021121          117 TRRDSFITSSWD-----DTVKLWTVDRPTSVRT--FKEHAYCVYNATWNPRHSDVFCSASGDC-----TLRIWDVREMGS  184 (317)
Q Consensus       117 ~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  184 (317)
                      ++. +++.|+.+     ..+.+||+.+.+-...  +.........+.+  + +.+++.|+.++     .+.+||+.+.+-
T Consensus        61 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTE-EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCE-EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            344 67777654     3588899877642221  1111111222222  3 67777777553     578888876532


Q ss_pred             ee--eeccCccceEEEEecCCCCcEEEEEecC-------CcEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEE
Q 021121          185 TM--IIPAHEFEILACDWNKYDDCLIASASVD-------KSIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       185 ~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~  253 (317)
                      ..  .+...... .+++..  ++.+++.|+.+       ..+.+||..+.+  -..+...  ...-.+++.. +++ +++
T Consensus       137 ~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~-iyv  209 (302)
T 2xn4_A          137 FHVAPMNTRRSS-VGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL-NNL-LYA  209 (302)
T ss_dssp             EEECCCSSCCBS-CEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTE-EEE
T ss_pred             eecCCCCCcccC-ceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE-CCE-EEE
Confidence            11  11111111 122222  56777777643       358899987643  2222111  1111122222 444 777


Q ss_pred             eeecC-----CeEEEEecccccc-eeeeeecccceeEeEEEEeccCCeEEEeecCC-----cEEEEecCCC
Q 021121          254 SCSYD-----MTVCLWDFMVEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDE-----LVYVWQQGMD  313 (317)
Q Consensus       254 ~~~~d-----~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~~w~~~~~  313 (317)
                      .|+.+     ..+.+||+.+.+- .+..+...... .+++. .+ +.+++.||.++     .+.+||+..+
T Consensus       210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~-~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCA-VN-GLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ET-TEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEE-EC-CEEEEECCcCCCcccccEEEEcCCCC
Confidence            77754     3688999877641 11111111111 11222 23 67788887654     4788887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.94  E-value=0.015  Score=55.06  Aligned_cols=208  Identities=12%  Similarity=0.029  Sum_probs=109.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCC-----CCeEEEEEc-CCeEEEEEeCCCCCCCCcee--eccCCc
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESH-----DSLLIAAVA-DGSVKIYDTALPPTANPIRS--LHEHTR  107 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~--~~~~~~  107 (317)
                      .+.+.+++++.+.  +...........|.|+++.|..     ..++++|.. |++|+|+++...   +.+..  +.. ..
T Consensus       531 g~~l~~fel~~~~--L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l---~~~~~~~L~~-~~  604 (1158)
T 3ei3_A          531 GRALYYLQIHPQE--LRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF---ELLHKEMLGG-EI  604 (1158)
T ss_dssp             TTEEEEEEEETTE--EEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC---CEEEEEECCS-SC
T ss_pred             CCEEEEEEeeCCc--eeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC---CeEEEEECCC-CC
Confidence            4577788877542  4444445567789999998643     258999996 999999999743   32221  211 12


Q ss_pred             ceEEEEEec-CCCCEEEEEcCCCEEEEEEcC--CCceeEE--eeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC
Q 021121          108 EVHSADYNP-TRRDSFITSSWDDTVKLWTVD--RPTSVRT--FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM  182 (317)
Q Consensus       108 ~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~--~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (317)
                      ...++.+.. .+..+|..|-.||.+.-+.++  +++....  ..-...++.-..+...+...+++++ +.-..+|.-+ +
T Consensus       605 ~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~  682 (1158)
T 3ei3_A          605 IPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-H  682 (1158)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-S
T ss_pred             CCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-C
Confidence            334443321 233488899999998766554  4433221  1112334444444444233333333 3444444433 2


Q ss_pred             CceeeeccCccceE-EEEecCCC-CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEE
Q 021121          183 GSTMIIPAHEFEIL-ACDWNKYD-DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA  253 (317)
Q Consensus       183 ~~~~~~~~~~~~v~-~i~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  253 (317)
                      +.... ...-..+. ...|+... ..-++..+ ++.++|..+...+........-...++.++++|..+.+.+
T Consensus       683 ~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v  753 (1158)
T 3ei3_A          683 KLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV  753 (1158)
T ss_dssp             SEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEE
T ss_pred             ceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEE
Confidence            22211 11111222 23343211 23344443 4569999886543322222234567889999998774333

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.93  E-value=0.0056  Score=49.88  Aligned_cols=232  Identities=12%  Similarity=0.110  Sum_probs=125.4

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee---ccCCcceEEEEEecC---CCCEEEEEcC---C--
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL---HEHTREVHSADYNPT---RRDSFITSSW---D--  128 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~---d--  128 (317)
                      -.....|+|.|++ . |+++..+|.|.+++. .+ . ..+..+   .........|+++|+   +..++++-+.   +  
T Consensus        28 l~~P~~ia~~pdG-~-l~V~e~~g~I~~~d~-~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGG-R-YLVTERPGRLVLISP-SG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETT-E-EEEEETTTEEEEECS-SC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCC-e-EEEEeCCCEEEEEeC-CC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            3457889999998 3 555667799998862 22 1 222211   112346789999997   4423343332   3  


Q ss_pred             --CEEEEEEcCCC--ce-----e-EEeec-cccceEEEEEecCCCCeEEEEeC-------------CCeEEEEeCCCC--
Q 021121          129 --DTVKLWTVDRP--TS-----V-RTFKE-HAYCVYNATWNPRHSDVFCSASG-------------DCTLRIWDVREM--  182 (317)
Q Consensus       129 --g~v~iwd~~~~--~~-----~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--  182 (317)
                        ..|..|+....  ..     + ..+.. .......++|.|+ +.+.++.+.             .|.|.-++....  
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence              67888887654  11     1 11221 1123567999998 676666432             256666665432  


Q ss_pred             ------CceeeeccCccceEEEEecCCCCcEEEEEecCC---cEEEEEccC---------------CCccEEEEecCCCc
Q 021121          183 ------GSTMIIPAHEFEILACDWNKYDDCLIASASVDK---SIKIWDVRN---------------YRVPIAVLNGHGYA  238 (317)
Q Consensus       183 ------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~v~d~~~---------------~~~~~~~~~~~~~~  238 (317)
                            .....-.++.. ...++|+|.++.++++-....   .|.+.....               ...++..+......
T Consensus       182 ~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                  01111123333 457899985555555433222   244332111               01223333112235


Q ss_pred             eeEEEec-------CCCCeeEEeeecCCeEEEEeccccccee--ee-eecccceeEeEEEEeccCCeEEEee
Q 021121          239 VRKVKFS-------PHRRNLLASCSYDMTVCLWDFMVEDALV--GR-YDHHTEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       239 v~~~~~~-------~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~-~~~~~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      ...++|.       .++. ++++.-..+.|...++.......  .. +......+..+++.|+ +.++++..
T Consensus       261 p~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD-G~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD-GGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT-SCEEEEEC
T ss_pred             CcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC-CcEEEEEe
Confidence            6788884       4554 66666667788888887543221  12 2222456899999998 56665553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.92  E-value=0.0052  Score=49.47  Aligned_cols=229  Identities=9%  Similarity=-0.015  Sum_probs=120.6

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee-eccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ....+.++.|.+.+ ..++ .+..|.| +...+.++..+.+.. .......+.++.+.+ +. .++ ++.+|.|.. ..+
T Consensus        34 ~~~~~~~v~~~~~~-~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           34 TTATILDMSFIDRH-HGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             CSSCEEEEEESSSS-CEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEE-EEETTEEEE-ESS
T ss_pred             CCCcEEEEEECCCC-cEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEE-EECCCeEEE-ECC
Confidence            34578999998665 4555 4567754 223333323332221 112345788999986 33 444 455675544 333


Q ss_pred             CCceeEEeec---cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-ccCccceEEEEecCCCCcEEEEEec
Q 021121          138 RPTSVRTFKE---HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-PAHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       138 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      .++.-.....   ....+..+.+.++ +.++++ +.+|.|..- ...++.-... ......+..+.+.| ++.+++.+. 
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~-~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-  181 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGN-GSAEMI-TNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-  181 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEET-TEEEEE-ETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-
T ss_pred             CCCCceECccccCCCCCeEEEEEECC-CCEEEE-eCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-
Confidence            3444333321   2345777887765 555544 456654321 2223332222 23445688999998 777777664 


Q ss_pred             CCcEEE-EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee-c---ccceeEeEEE
Q 021121          214 DKSIKI-WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD-H---HTEFAVGVDM  288 (317)
Q Consensus       214 d~~i~v-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~---~~~~v~~~~~  288 (317)
                      ++.+.. .|-. +..-..........+..+.+.+++. ++ .++.+|.+.+.+...++. ..... .   +...+..+.+
T Consensus       182 ~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          182 RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             TSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEE
T ss_pred             CCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCe-eEeccCCcccCCcceEEEEe
Confidence            454443 3321 1211111233456788999999886 34 455678877764222321 11111 1   2235788888


Q ss_pred             EeccCCeEEEeecCCcE
Q 021121          289 SVLVEGLLASTGWDELV  305 (317)
Q Consensus       289 ~~~~~~~l~s~~~dg~i  305 (317)
                      .++ +.+++++ .+|.|
T Consensus       258 ~~~-~~~~~~g-~~g~i  272 (327)
T 2xbg_A          258 RTP-NEVWLAG-GAGAL  272 (327)
T ss_dssp             SSS-SCEEEEE-STTCE
T ss_pred             cCC-CEEEEEe-CCCeE
Confidence            875 5555544 46766

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.85  E-value=0.0064  Score=48.18  Aligned_cols=216  Identities=11%  Similarity=0.114  Sum_probs=106.6

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-----CeEEEEEeCCCCC--CCCceeeccCCcce
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-----GSVKIYDTALPPT--ANPIRSLHEHTREV  109 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~v~~~~~~~~--~~~~~~~~~~~~~v  109 (317)
                      ..+.+||.....  ...+........-.+++.. ++ .+++.|+.+     ..+.+||..+...  ...+..+.......
T Consensus        31 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~  106 (301)
T 2vpj_A           31 DVVEKYDPKTQE--WSFLPSITRKRRYVASVSL-HD-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA  106 (301)
T ss_dssp             CCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC
T ss_pred             eEEEEEcCCCCe--EEeCCCCChhhccccEEEE-CC-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce
Confidence            468888887653  2222222222111222222 33 577777754     4588889876420  22222222212222


Q ss_pred             EEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCC-----CeEEEE
Q 021121          110 HSADYNPTRRDSFITSSWD-----DTVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGD-----CTLRIW  177 (317)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~  177 (317)
                      ..+.+  ++. +++.|+.+     ..+.+||+.+.+-..  .+.........+.+  + +.+++.|+.+     ..+.+|
T Consensus       107 ~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          107 GATTL--GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S-GVIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             EEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEE
T ss_pred             eEEEE--CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C-CEEEEECCCCCCcccceEEEE
Confidence            22222  444 66666643     368899988764322  22211111222222  3 6777777654     458899


Q ss_pred             eCCCCCcee--eeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCCCccEEEEecC---CCceeEEEecCC
Q 021121          178 DVREMGSTM--IIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNYRVPIAVLNGH---GYAVRKVKFSPH  247 (317)
Q Consensus       178 d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~~~~  247 (317)
                      |+.+.+-..  .+....... ++...  ++.+++.|+.+     ..+.+||+.+.+  -..+...   ......+.+  +
T Consensus       181 d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~  253 (301)
T 2vpj_A          181 DPHTGHWTNVTPMATKRSGA-GVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVL--R  253 (301)
T ss_dssp             ETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--T
T ss_pred             eCCCCcEEeCCCCCcccccc-eEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEE--C
Confidence            987653221  111111111 22222  56788888764     468999988654  2222211   111122222  4


Q ss_pred             CCeeEEeeecC-----CeEEEEeccccc
Q 021121          248 RRNLLASCSYD-----MTVCLWDFMVED  270 (317)
Q Consensus       248 ~~~~l~~~~~d-----~~i~vwd~~~~~  270 (317)
                      ++ +++.|+.+     ..+.+||+.+.+
T Consensus       254 ~~-i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          254 GR-LYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             TE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence            54 67777755     357788877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.85  E-value=0.0067  Score=48.23  Aligned_cols=216  Identities=5%  Similarity=0.016  Sum_probs=106.5

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC----CeEEEEEeCCCCCCCCceeeccCCcceEE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD----GSVKIYDTALPPTANPIRSLHEHTREVHS  111 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~  111 (317)
                      ...+.+||.....  ...+........-.+++.. ++ .+++.|+.+    ..+.+||..+. ....+..+.........
T Consensus        23 ~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~   97 (306)
T 3ii7_A           23 PQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFW-DN-VVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPPTPRDSLAA   97 (306)
T ss_dssp             TTSEEEEETTTTE--EEECCCCSCCCBSCEEEEE-TT-EEEEECCBSSSBCCEEEEEETTTT-EEEEEECCSSCCBSCEE
T ss_pred             CceEEEecCCCCC--EecCCCCCcccceeEEEEE-CC-EEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCCccccceeE
Confidence            4578888887654  2222222221111222222 33 577777654    56888887654 22222222211112222


Q ss_pred             EEEecCCCCEEEEEcCC------CEEEEEEcCCCceeEE--eeccccceEEEEEecCCCCeEEEEeC---------CCeE
Q 021121          112 ADYNPTRRDSFITSSWD------DTVKLWTVDRPTSVRT--FKEHAYCVYNATWNPRHSDVFCSASG---------DCTL  174 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i  174 (317)
                      +.+  ++. +++.|+.+      ..+.+||+.+.+-...  +.........+.+  + +.+++.|+.         -..+
T Consensus        98 ~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~  171 (306)
T 3ii7_A           98 CAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N-GLIYVCGGSLGNNVSGRVLNSC  171 (306)
T ss_dssp             EEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEESCTTTCEECCCE
T ss_pred             EEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C-CEEEEECCCCCCCCcccccceE
Confidence            222  444 66777654      4688999887643221  1111111122222  3 667767654         3458


Q ss_pred             EEEeCCCCCce--eeeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCCCccEEEEec---CCCceeEEEe
Q 021121          175 RIWDVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNYRVPIAVLNG---HGYAVRKVKF  244 (317)
Q Consensus       175 ~i~d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~  244 (317)
                      .+||+.+.+=.  ..+...... .++...  ++++++.|+.+     ..+.+||..+.+  -..+..   .......+.+
T Consensus       172 ~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          172 EVYDPATETWTELCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             EEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEE
T ss_pred             EEeCCCCCeEEECCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCCCCCccceeEEEE
Confidence            89998875321  111111111 122222  56777777654     358899987643  222211   1112222333


Q ss_pred             cCCCCeeEEeeecC-----CeEEEEeccccc
Q 021121          245 SPHRRNLLASCSYD-----MTVCLWDFMVED  270 (317)
Q Consensus       245 ~~~~~~~l~~~~~d-----~~i~vwd~~~~~  270 (317)
                        +++ +++.|+.+     ..+.+||..+.+
T Consensus       247 --~~~-i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          247 --GSI-VYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             --TTE-EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             --CCE-EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence              444 77777744     568888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.79  E-value=0.0074  Score=49.17  Aligned_cols=136  Identities=8%  Similarity=-0.105  Sum_probs=60.6

Q ss_pred             CEEEEEEcCCCceeEE--eeccccceEEEEEecCCCCeEEEEeC------CCeEEEEeC--CCCC--ceeeeccCccce-
Q 021121          129 DTVKLWTVDRPTSVRT--FKEHAYCVYNATWNPRHSDVFCSASG------DCTLRIWDV--REMG--STMIIPAHEFEI-  195 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~--~~~~~~~~~~~v-  195 (317)
                      ..+.+||+.+.+-...  +......-.+++.. + +.+++.|+.      ...+..||+  .+.+  .+..+....... 
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-G-DKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-T-TEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-C-CEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            5789999987643222  22111110223322 2 567777654      345777876  3321  111111111111 


Q ss_pred             EEEEecCCCCcEEEEEecC----------------------CcEEEEEccCCCcc-EEEEecCCCceeEEEecCCCCeeE
Q 021121          196 LACDWNKYDDCLIASASVD----------------------KSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLL  252 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d----------------------~~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l  252 (317)
                      .++...  ++.+++.|+.+                      ..+.+||+.+.+-. +..+........++.  .+++ ++
T Consensus       246 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~  320 (357)
T 2uvk_A          246 GFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LL  320 (357)
T ss_dssp             CEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EE
T ss_pred             ceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EE
Confidence            112222  56777777742                      25778998765421 111211111112222  2455 67


Q ss_pred             EeeecCC------eEEEEecccccc
Q 021121          253 ASCSYDM------TVCLWDFMVEDA  271 (317)
Q Consensus       253 ~~~~~d~------~i~vwd~~~~~~  271 (317)
                      +.|+.++      .+.++++++++.
T Consensus       321 v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          321 IIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             EEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             EEeeeCCCCCEeeeEEEEEEcCcEe
Confidence            7777543      355567777663

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.75  E-value=0.013  Score=48.57  Aligned_cols=274  Identities=7%  Similarity=-0.075  Sum_probs=130.2

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe--EEEEEeCC-CCCC
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS--VKIYDTAL-PPTA   96 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~v~~~~~-~~~~   96 (317)
                      ++.+.+++.       .| +.+++...................|.+|++.|..+..+.++...|.  -.||.... +...
T Consensus        22 ~g~l~vgt~-------~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW   93 (394)
T 3b7f_A           22 PVMLLVATI-------KG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNW   93 (394)
T ss_dssp             CCEEEEEET-------TE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCC
T ss_pred             CCEEEEEec-------Cc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCc
Confidence            567777765       45 5566554322234333222234579999999833345555655541  12333332 2222


Q ss_pred             CCcee---ecc--------CCcceEEEEEecCC-CCEEEEEcCCCEEEEEEcCCCceeEEeec-----------------
Q 021121           97 NPIRS---LHE--------HTREVHSADYNPTR-RDSFITSSWDDTVKLWTVDRPTSVRTFKE-----------------  147 (317)
Q Consensus        97 ~~~~~---~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------------  147 (317)
                      ..+..   +..        ....|.++++.|.. ...+.++...+.|...+ +.++.-..+..                 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g  172 (394)
T 3b7f_A           94 TEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDG  172 (394)
T ss_dssp             EECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC---
T ss_pred             eECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccC
Confidence            22211   111        11357788998742 33566666566665543 22333222211                 


Q ss_pred             --cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc-C------------ccceEEEEecCCCCcEEEEEe
Q 021121          148 --HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA-H------------EFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       148 --~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~------------~~~v~~i~~~~~~~~~l~~~~  212 (317)
                        ....+.+|.+.|.+...++.+..++.|...+ ..++.-..+.. .            ...+.++.++|.++..+.++.
T Consensus       173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~  251 (394)
T 3b7f_A          173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN  251 (394)
T ss_dssp             -CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred             CCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence              1235789999985455555665555554443 22222222210 0            124788999985556676666


Q ss_pred             cCCcEEEEEccCCCccEEEEec--CC---CceeEEEecCCCCeeEEeeec-----------CCeEEEEecccccceeeee
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNG--HG---YAVRKVKFSPHRRNLLASCSY-----------DMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~  276 (317)
                      ..+ |...+  ........+..  ..   ..+..++++|.....|..+..           ++...+|....+......+
T Consensus       252 ~~g-l~~s~--D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~  328 (394)
T 3b7f_A          252 HCG-IYRMD--RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ  328 (394)
T ss_dssp             TTE-EEEEE--TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred             CCe-EEEeC--CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence            544 44433  21111222211  11   235678888743333444431           2334566554432122221


Q ss_pred             e-ccc--c-----eeEeEEEEeccCCeEEEeecCCcEE
Q 021121          277 D-HHT--E-----FAVGVDMSVLVEGLLASTGWDELVY  306 (317)
Q Consensus       277 ~-~~~--~-----~v~~~~~~~~~~~~l~s~~~dg~i~  306 (317)
                      . +-.  .     ....++++|.++..|+.++.++.|.
T Consensus       329 ~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~  366 (394)
T 3b7f_A          329 DRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW  366 (394)
T ss_dssp             CBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred             CCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence            1 101  0     1135778876445566666566554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.74  E-value=0.0056  Score=48.56  Aligned_cols=216  Identities=10%  Similarity=0.109  Sum_probs=104.4

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-----CeEEEEEeCCCCCCCCceeeccCCcceEE
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-----GSVKIYDTALPPTANPIRSLHEHTREVHS  111 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~  111 (317)
                      ..+..||.....  ...+........-.+++.. ++ .+++.|+.+     ..+.+||..+. ....+..+.........
T Consensus        30 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~  104 (302)
T 2xn4_A           30 RSVECYDFKEER--WHQVAELPSRRCRAGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKD-QWTSVANMRDRRSTLGA  104 (302)
T ss_dssp             CCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEE
T ss_pred             CcEEEEcCcCCc--EeEcccCCcccccceEEEE-CC-EEEEEeCcCCCccccceEEECCCCC-ceeeCCCCCccccceEE
Confidence            468888887653  3333222222111222222 33 577777654     35778887653 22222222211112222


Q ss_pred             EEEecCCCCEEEEEcCC-----CEEEEEEcCCCceeEE--eeccccceEEEEEecCCCCeEEEEeCC-------CeEEEE
Q 021121          112 ADYNPTRRDSFITSSWD-----DTVKLWTVDRPTSVRT--FKEHAYCVYNATWNPRHSDVFCSASGD-------CTLRIW  177 (317)
Q Consensus       112 ~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~  177 (317)
                      +.+  ++. +++.|+.+     ..+.+||+.+.+-...  +.........+.+  + +.+++.|+.+       ..+.+|
T Consensus       105 ~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~y  178 (302)
T 2xn4_A          105 AVL--NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G-GLLYAVGGYDVASRQCLSTVECY  178 (302)
T ss_dssp             EEE--TTE-EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEETTTTEECCCEEEE
T ss_pred             EEE--CCE-EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C-CEEEEEeCCCCCCCccccEEEEE
Confidence            222  344 66666654     3578888877643221  1111111122222  2 6677776542       358899


Q ss_pred             eCCCCCce--eeeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCCCccEEEEecCCC--ceeEEEecCCC
Q 021121          178 DVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNYRVPIAVLNGHGY--AVRKVKFSPHR  248 (317)
Q Consensus       178 d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~  248 (317)
                      |+.+.+=.  ..+....... +++..  ++.+++.|+.+     ..+.+||..+.+  -..+.....  .-..++.. ++
T Consensus       179 d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-~~  252 (302)
T 2xn4_A          179 NATTNEWTYIAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAV-NG  252 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TT
T ss_pred             eCCCCcEEECCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC--EeeCCCCCCccccCeEEEE-CC
Confidence            98765321  1122111111 22222  56788888764     368899987643  222221111  11122222 44


Q ss_pred             CeeEEeeecCC-----eEEEEeccccc
Q 021121          249 RNLLASCSYDM-----TVCLWDFMVED  270 (317)
Q Consensus       249 ~~~l~~~~~d~-----~i~vwd~~~~~  270 (317)
                      + +++.|+.++     .+.+||+.+.+
T Consensus       253 ~-i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          253 L-LYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             E-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E-EEEECCcCCCcccccEEEEcCCCCe
Confidence            4 677777553     48888887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.70  E-value=0.014  Score=47.54  Aligned_cols=234  Identities=11%  Similarity=0.110  Sum_probs=121.0

Q ss_pred             cceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCC-cceeee--eecCCCCeeEEEecCC---CCCeEEEEE
Q 021121            8 FNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAP-ALTELV--AFDTADGVYDLAWSES---HDSLLIAAV   80 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~-~~~~~~--~~~~~~~v~~~~~~~~---~~~~l~~~~   80 (317)
                      .....|+|.|  +++ ++++..       .|+|++++.+.... .+..+.  ..........|+++|+   +..+.++-.
T Consensus        18 ~~P~~i~~~p--dG~~l~V~e~-------~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           18 DHPWALAFLP--DNHGMLITLR-------GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             SSEEEEEECS--TTCCEEEEET-------TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCcEEEEEcC--CCCEEEEEeC-------CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence            3567899999  677 776654       78999988432110 011110  0122456789999995   433444433


Q ss_pred             c-------CCeEEEEEeCCCCC----CCCc-eeec---cCCcceEEEEEecCCCCEEEEEcC-------------CCEEE
Q 021121           81 A-------DGSVKIYDTALPPT----ANPI-RSLH---EHTREVHSADYNPTRRDSFITSSW-------------DDTVK  132 (317)
Q Consensus        81 ~-------dg~i~v~~~~~~~~----~~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~  132 (317)
                      .       ...|..+++.....    .+.+ ..+.   .....-..+.|.|+|. ++++.+.             .|.|.
T Consensus        89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~  167 (353)
T 2g8s_A           89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLV  167 (353)
T ss_dssp             EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred             CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEE
Confidence            2       23566666653210    0111 1111   1111235699999996 5554432             25777


Q ss_pred             EEEcCCCc------------eeEEeeccccceEEEEEecCCCCeEEEEeC-CCeEEEEeCCCCC----------------
Q 021121          133 LWTVDRPT------------SVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCTLRIWDVREMG----------------  183 (317)
Q Consensus       133 iwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~----------------  183 (317)
                      -++.+..-            ....+...-.....++|.|..+.++++-.. ++.=.|.-+..+.                
T Consensus       168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~  247 (353)
T 2g8s_A          168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGF  247 (353)
T ss_dssp             EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSS
T ss_pred             EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCC
Confidence            77765320            112222122347899999953555544221 1111222121111                


Q ss_pred             ---------------ceeeeccCccceEEEEecC------CCCcEEEEEecCCcEEEEEccCCCccEEE--E-ecCCCce
Q 021121          184 ---------------STMIIPAHEFEILACDWNK------YDDCLIASASVDKSIKIWDVRNYRVPIAV--L-NGHGYAV  239 (317)
Q Consensus       184 ---------------~~~~~~~~~~~v~~i~~~~------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~-~~~~~~v  239 (317)
                                     +...+. +......+.+.+      ..+.++++....+.|...++...+ ....  + ......+
T Consensus       248 ~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~rp  325 (353)
T 2g8s_A          248 KIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK-VTEDGRILTDRGQRI  325 (353)
T ss_dssp             CCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE-EEEEEEESGGGCCCE
T ss_pred             ccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe-EeeeEEcccCCCCce
Confidence                           111111 122456677753      246777777777888888887542 1221  2 2223478


Q ss_pred             eEEEecCCCCeeEEe
Q 021121          240 RKVKFSPHRRNLLAS  254 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~  254 (317)
                      ..+++.|+|. ++++
T Consensus       326 ~~v~~~pdG~-lyv~  339 (353)
T 2g8s_A          326 RDVRTGPDGY-LYVL  339 (353)
T ss_dssp             EEEEECTTSC-EEEE
T ss_pred             eEEEECCCCc-EEEE
Confidence            8999999998 4443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.67  E-value=0.0082  Score=47.95  Aligned_cols=181  Identities=7%  Similarity=0.070  Sum_probs=88.2

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC-----C------CEEEEEEcCCCceeE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW-----D------DTVKLWTVDRPTSVR  143 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~v~iwd~~~~~~~~  143 (317)
                      +++.|+  ..+..||..+. .... ..+..............++. +++.|+.     .      ..+.+||+.+.+-..
T Consensus         7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            455554  56888998764 2221 22221112222222333455 6777763     1      237788887764221


Q ss_pred             --EeeccccceEEEEEecCCCCeEEEEeCC--------CeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEE
Q 021121          144 --TFKEHAYCVYNATWNPRHSDVFCSASGD--------CTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       144 --~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                        .+.........+.+  + +.+++.|+.+        ..+.+||+.+.+=  +..++..... .+++..  ++++++.|
T Consensus        82 ~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~G  155 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEA--L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSH--MDLVYVIG  155 (315)
T ss_dssp             CCCBSSCEESCEEEEE--T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEEC
T ss_pred             CCCCCcchhceeEEEE--C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEE--CCEEEEEe
Confidence              11111111122222  2 6677777632        4588999876531  1112211111 122222  66788888


Q ss_pred             ec-C-----CcEEEEEccCCCccEEEEecCC--CceeEEEecCCCCeeEEeeecCC-----eEEEEeccccc
Q 021121          212 SV-D-----KSIKIWDVRNYRVPIAVLNGHG--YAVRKVKFSPHRRNLLASCSYDM-----TVCLWDFMVED  270 (317)
Q Consensus       212 ~~-d-----~~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~-----~i~vwd~~~~~  270 (317)
                      +. +     ..+.+||..+.+  -..+....  ..-.+++.. +++ +++.|+.++     .+.+||+.+.+
T Consensus       156 G~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          156 GKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVH-DGR-IIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTE-EEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEEE-CCE-EEEEeccCCCCccceEEEEECCCCe
Confidence            76 2     368899987643  22222111  111122222 444 777777654     58888887764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.62  E-value=0.015  Score=47.94  Aligned_cols=141  Identities=13%  Similarity=0.056  Sum_probs=91.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCCceeeeccC----ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc----------
Q 021121          162 SDVFCSASGDCTLRIWDVREMGSTMIIPAH----EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV----------  227 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----------  227 (317)
                      +.-++.+ .++.||..++......+.+...    -..+..+..+| +|++||..+ +..|.|..+..+..          
T Consensus        32 ~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           32 GTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            4444333 3477888887755445454432    22578899999 999999886 56799998873221          


Q ss_pred             -cEEEEec------CCCceeEEEecCCCCe--eEEeeecCCeEEEEeccccc-ceeeeee---------cccceeEeEEE
Q 021121          228 -PIAVLNG------HGYAVRKVKFSPHRRN--LLASCSYDMTVCLWDFMVED-ALVGRYD---------HHTEFAVGVDM  288 (317)
Q Consensus       228 -~~~~~~~------~~~~v~~~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~-~~~~~~~---------~~~~~v~~~~~  288 (317)
                       ....+.-      ...+|..+.|+|-+.+  .|++-..|+.|++||+.... .+. .+.         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             1112221      2467999999996543  58888889999999998632 111 111         12256889999


Q ss_pred             EeccCCeEEE--eecCCcEEE
Q 021121          289 SVLVEGLLAS--TGWDELVYV  307 (317)
Q Consensus       289 ~~~~~~~l~s--~~~dg~i~~  307 (317)
                      ..+ +-.|..  ....|.|+-
T Consensus       188 g~~-~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          188 SKD-GLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CTT-SSCEEEEECTTSCEEEE
T ss_pred             cCC-CcEEEEEecCCCCCEEE
Confidence            985 555555  447787654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.60  E-value=0.02  Score=46.66  Aligned_cols=240  Identities=12%  Similarity=0.088  Sum_probs=125.4

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee----ccCCcceEEEEEecC---CCCEEEEEcC-------
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL----HEHTREVHSADYNPT---RRDSFITSSW-------  127 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~-------  127 (317)
                      ....|+|.|++ ..|+++...|.|++++.... ....+..+    .........++++|+   +..+.++-..       
T Consensus        19 ~P~~i~~~pdG-~~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDN-HGMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTT-CCEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCC-CEEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            46889999998 42556667899999884321 11111111    122345689999996   4424443322       


Q ss_pred             CCEEEEEEcCCCc----eeEE-eec------cccceEEEEEecCCCCeEEEEeC-------------CCeEEEEeCCCCC
Q 021121          128 DDTVKLWTVDRPT----SVRT-FKE------HAYCVYNATWNPRHSDVFCSASG-------------DCTLRIWDVREMG  183 (317)
Q Consensus       128 dg~v~iwd~~~~~----~~~~-~~~------~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~  183 (317)
                      ...|..+++....    .... +..      .......++|.|+ +.+.++.+.             .|.|.-+|....-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            2367777765431    1111 111      1122467999998 666655433             2567777765320


Q ss_pred             ------------ceeee-ccCccceEEEEecCCCCcEEEEEec-CC--cEEEEEcc--------C---------------
Q 021121          184 ------------STMII-PAHEFEILACDWNKYDDCLIASASV-DK--SIKIWDVR--------N---------------  224 (317)
Q Consensus       184 ------------~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~v~d~~--------~---------------  224 (317)
                                  ....+ .++. ....++|+|.++.++++-.. ++  .|.+....        .               
T Consensus       176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        11111 2333 35789999844555544221 11  22221100        0               


Q ss_pred             -----CCccEEEEecCCCceeEEEecC-------CCCeeEEeeecCCeEEEEecccccceeee---eecccceeEeEEEE
Q 021121          225 -----YRVPIAVLNGHGYAVRKVKFSP-------HRRNLLASCSYDMTVCLWDFMVEDALVGR---YDHHTEFAVGVDMS  289 (317)
Q Consensus       225 -----~~~~~~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~  289 (317)
                           ...++..+..| .....+.|..       ++. ++++.-..+.|...++..++ ....   +......+..+++.
T Consensus       255 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGDK-VTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             SSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETTE-EEEEEEESGGGCCCEEEEEEC
T ss_pred             CCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCCe-EeeeEEcccCCCCceeEEEEC
Confidence                 01122233323 3567788864       344 66666667788888877543 2211   22223478999999


Q ss_pred             eccCCeEEEee-cCCcEEEEecC
Q 021121          290 VLVEGLLASTG-WDELVYVWQQG  311 (317)
Q Consensus       290 ~~~~~~l~s~~-~dg~i~~w~~~  311 (317)
                      |+ +.++++.. .+|  +||.+.
T Consensus       332 pd-G~lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          332 PD-GYLYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             TT-SCEEEEECSTTE--EEEEEE
T ss_pred             CC-CcEEEEEeCCCC--EEEEEe
Confidence            98 56555433 455  556654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.58  E-value=0.0075  Score=48.02  Aligned_cols=222  Identities=10%  Similarity=0.096  Sum_probs=105.9

Q ss_pred             CeEEEEEcC----CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC----C-----CEEEEEEcCCCc
Q 021121           74 SLLIAAVAD----GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW----D-----DTVKLWTVDRPT  140 (317)
Q Consensus        74 ~~l~~~~~d----g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~v~iwd~~~~~  140 (317)
                      .+++.|+.+    ..+.+||..+. ....+..+....... +++.. ++. +++.|+.    +     ..+.+||+.+.+
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~-~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGL-AGCVV-GGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSC-EEEEE-TTE-EEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccc-eEEEE-CCE-EEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            466666532    35778887653 122221111111111 12222 344 6666665    2     358888987764


Q ss_pred             eeE--EeeccccceEEEEEecCCCCeEEEEeCC-----CeEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEE
Q 021121          141 SVR--TFKEHAYCVYNATWNPRHSDVFCSASGD-----CTLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       141 ~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      -..  .+.........+.+  + +.+++.|+.+     ..+.+||+.+.+-..  .+.........+.+   ++.+++.|
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~G  175 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVG  175 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEC
T ss_pred             EeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEe
Confidence            221  11111112222222  3 6677776643     358889987653211  11211111122222   56777777


Q ss_pred             ecC-----CcEEEEEccCCCccEEEEec---CCCceeEEEecCCCCeeEEeeecC-----CeEEEEecccccce-eeeee
Q 021121          212 SVD-----KSIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVEDAL-VGRYD  277 (317)
Q Consensus       212 ~~d-----~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~-~~~~~  277 (317)
                      +.+     ..+.+||..+.+  -..+..   .......+.+  +++ +++.|+.+     ..+.+||+.+.+-. +..+.
T Consensus       176 G~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  250 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETETWTFVAPMK  250 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred             CCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence            754     458899987643  222211   1111122222  444 67777754     45889998876511 11111


Q ss_pred             cccceeEeEEEEeccCCeEEEeecC-----CcEEEEecCCC
Q 021121          278 HHTEFAVGVDMSVLVEGLLASTGWD-----ELVYVWQQGMD  313 (317)
Q Consensus       278 ~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~  313 (317)
                      ..... .+++. -+ +.+++.||.+     ..+.+||+..+
T Consensus       251 ~~r~~-~~~~~-~~-~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          251 HRRSA-LGITV-HQ-GRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCCBS-CEEEE-ET-TEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCccc-eEEEE-EC-CEEEEEcCcCCCcccceEEEEcCCCC
Confidence            11111 12222 23 6777888754     45677877653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.55  E-value=0.019  Score=47.31  Aligned_cols=137  Identities=9%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             CceEEEEecCCCCCcceeeeeec--CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCC---------ceeecc
Q 021121           36 NGRVHVLDLSPAAPALTELVAFD--TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP---------IRSLHE  104 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~---------~~~~~~  104 (317)
                      ++.||.-++.+.. ..+.+....  .-..|..+..+|+| .+||..+ +..|.|-.+..+.....         ...+.-
T Consensus        40 ~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           40 DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence            4588888887543 344444321  12368889999998 5777765 56799999874321110         112221


Q ss_pred             ------CCcceEEEEEecCCCC--EEEEEcCCCEEEEEEcCCCc--eeEEee---------ccccceEEEEEecCCCCeE
Q 021121          105 ------HTREVHSADYNPTRRD--SFITSSWDDTVKLWTVDRPT--SVRTFK---------EHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus       105 ------~~~~v~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~--~~~~~~---------~~~~~v~~~~~~~~~~~~l  165 (317)
                            ...+|..+.|+|-+.+  .|++-..|+.|++||+....  +. .++         .....|.+++|.++ +-.|
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~-~lTL  194 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKD-GLTL  194 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTT-SSCE
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCC-CcEE
Confidence                  2578999999997543  79999999999999998631  11 222         12256889999996 6666


Q ss_pred             EEEe--CCCeEEEE
Q 021121          166 CSAS--GDCTLRIW  177 (317)
Q Consensus       166 ~~~~--~dg~i~i~  177 (317)
                      ...+  ++|.|+-.
T Consensus       195 Yvl~~t~~GDIYAl  208 (452)
T 3pbp_A          195 YCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEecCCCCCEEEE
Confidence            6644  77887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.53  E-value=0.016  Score=46.24  Aligned_cols=215  Identities=8%  Similarity=0.045  Sum_probs=101.3

Q ss_pred             ceEEEEecCCCCCcceeeeeecC--CCCeeEEEecCCCCCeEEEEEc-----C------CeEEEEEeCCCCCCCCceeec
Q 021121           37 GRVHVLDLSPAAPALTELVAFDT--ADGVYDLAWSESHDSLLIAAVA-----D------GSVKIYDTALPPTANPIRSLH  103 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~v~~~~~~~~~~~~~~~~  103 (317)
                      ..+..||.....-  .. .....  ...-.+++. .++ .+++.|+.     .      ..+.+||..+. ....+..+.
T Consensus        13 ~~~~~yd~~~~~W--~~-~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p   86 (315)
T 4asc_A           13 EGAVAYDPAANEC--YC-ASLSSQVPKNHVSLVT-KEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGMPPLP   86 (315)
T ss_dssp             TEEEEEETTTTEE--EE-EECCCCSCSSEEEEEC-TTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEECCCBS
T ss_pred             CceEEECCCCCeE--ec-CCCCCCCCccceEEEE-ECC-EEEEEcCcccCCCCCccccccceEEecCCCC-eEEECCCCC
Confidence            3788999877652  22 22211  222222333 344 57777773     1      12667776643 222222221


Q ss_pred             cCCcceEEEEEecCCCCEEEEEcCC--------CEEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeC-C-
Q 021121          104 EHTREVHSADYNPTRRDSFITSSWD--------DTVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASG-D-  171 (317)
Q Consensus       104 ~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-  171 (317)
                      ........+.+  ++. +++.|+.+        ..+.+||+.+.+-..  .+.........+.  .+ +.+++.|+. + 
T Consensus        87 ~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~-~~iyv~GG~~~~  160 (315)
T 4asc_A           87 SPRCLFGLGEA--LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HM-DLVYVIGGKGSD  160 (315)
T ss_dssp             SCEESCEEEEE--TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ET-TEEEEECCBCTT
T ss_pred             cchhceeEEEE--CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--EC-CEEEEEeCCCCC
Confidence            11111112222  344 66666632        458899988763221  1111111122222  22 667777776 2 


Q ss_pred             ----CeEEEEeCCCCCc--eeeeccCccceEEEEecCCCCcEEEEEecCC-----cEEEEEccCCCccEEEEecC--CCc
Q 021121          172 ----CTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVDK-----SIKIWDVRNYRVPIAVLNGH--GYA  238 (317)
Q Consensus       172 ----g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~--~~~  238 (317)
                          ..+.+||+.+.+=  +..+....... +++..  ++++++.|+.++     .+.+||..+.+  -..+...  ...
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~  235 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK--WAPFEAFPQERS  235 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE--EEEECCCSSCCB
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhce-EEEEE--CCEEEEEeccCCCCccceEEEEECCCCe--EEECCCCCCccc
Confidence                4688999876531  11121111111 22222  567888887654     48889987653  2222211  111


Q ss_pred             eeEEEecCCCCeeEEeeecCC--------------eEEEEeccccc
Q 021121          239 VRKVKFSPHRRNLLASCSYDM--------------TVCLWDFMVED  270 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~--------------~i~vwd~~~~~  270 (317)
                      -.+++.. +++ +++.|+.++              .+.+||+.+.+
T Consensus       236 ~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          236 SLSLVSL-VGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             SCEEEEE-TTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ceeEEEE-CCE-EEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            1122222 444 677777532              36677877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.50  E-value=0.012  Score=46.75  Aligned_cols=216  Identities=11%  Similarity=0.094  Sum_probs=103.5

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc----C-----CeEEEEEeCCCCCCCCceeeccCCc
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA----D-----GSVKIYDTALPPTANPIRSLHEHTR  107 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~v~~~~~~~~~~~~~~~~~~~~  107 (317)
                      ..+.+||.....  ...+........-.+++.. ++ .+++.|+.    +     ..+.+||..+. ....+..+.....
T Consensus        39 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~  113 (308)
T 1zgk_A           39 SYLEAYNPSNGT--WLRLADLQVPRSGLAGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTN-QWSPCAPMSVPRN  113 (308)
T ss_dssp             CCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTT-EEEECCCCSSCCB
T ss_pred             ceEEEEcCCCCe--EeECCCCCcccccceEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCCCC-eEeECCCCCcCcc
Confidence            468888877653  2222222222111222222 33 56666665    2     35778887653 2222222221112


Q ss_pred             ceEEEEEecCCCCEEEEEcCC-----CEEEEEEcCCCceeE--EeeccccceEEEEEecCCCCeEEEEeCC-----CeEE
Q 021121          108 EVHSADYNPTRRDSFITSSWD-----DTVKLWTVDRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGD-----CTLR  175 (317)
Q Consensus       108 ~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~  175 (317)
                      ....+.+  ++. +++.|+.+     ..+.+||+.+.+-..  .+.........+.+  + +.+++.|+.+     ..+.
T Consensus       114 ~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~  187 (308)
T 1zgk_A          114 RIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N-RLLYAVGGFDGTNRLNSAE  187 (308)
T ss_dssp             TCEEEEE--TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEE
T ss_pred             ccEEEEE--CCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--C-CEEEEEeCCCCCCcCceEE
Confidence            2222222  444 66666543     358889987763221  11111111222222  3 6777777654     4588


Q ss_pred             EEeCCCCCce--eeeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCCCccEEEEecCC--CceeEEEecC
Q 021121          176 IWDVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNYRVPIAVLNGHG--YAVRKVKFSP  246 (317)
Q Consensus       176 i~d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~  246 (317)
                      +||+.+.+=.  ..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+  -..+....  ..-.+++.. 
T Consensus       188 ~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-  261 (308)
T 1zgk_A          188 CYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET--WTFVAPMKHRRSALGITVH-  261 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-
T ss_pred             EEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc--EEECCCCCCCccceEEEEE-
Confidence            9998765321  111111111222222   56788888765     468999987643  22221111  111122222 


Q ss_pred             CCCeeEEeeecC-----CeEEEEeccccc
Q 021121          247 HRRNLLASCSYD-----MTVCLWDFMVED  270 (317)
Q Consensus       247 ~~~~~l~~~~~d-----~~i~vwd~~~~~  270 (317)
                      +++ +++.|+.+     ..+.+||+.+.+
T Consensus       262 ~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          262 QGR-IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence            444 67777644     357788877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.50  E-value=0.027  Score=45.52  Aligned_cols=236  Identities=13%  Similarity=0.136  Sum_probs=124.7

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-----cCCCCeeEEEecCC---CCCeEEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-----DTADGVYDLAWSES---HDSLLIAA   79 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~   79 (317)
                      .....|+|.|  ++.++++...      .|+|++++.....  ...+...     ........|+++|+   + ..|.+.
T Consensus        32 ~~P~~ia~~p--dG~llVter~------~G~I~~v~~~~g~--~~~v~~~~~v~~~g~~GllGia~~Pdf~~~-g~lYv~  100 (347)
T 3das_A           32 NSPWGLAPLP--GGDLLVSSRD------EATITRVDAKTGR--KTELGEVPGVSPSGEGGLLGIALSPDYASD-HMVYAY  100 (347)
T ss_dssp             SSEEEEEECT--TSCEEEEETT------TCEEEEECTTTCC--EEEEEECTTCCCBTTBSEEEEEECTTHHHH-CEEEEE
T ss_pred             CCceEEEEcC--CCcEEEEEec------CCEEEEEECCCCc--EeeecccCceeecCCCCceeeEeccccccC-CEEEEE
Confidence            4567899999  6788887754      7899988754332  2222211     23557899999995   3 244433


Q ss_pred             -E--cCCeEEEEEeCCCC----CC-CCce---eec-cCCcceEEEEEecCCCCEEEEEcC-------------CCEEEEE
Q 021121           80 -V--ADGSVKIYDTALPP----TA-NPIR---SLH-EHTREVHSADYNPTRRDSFITSSW-------------DDTVKLW  134 (317)
Q Consensus        80 -~--~dg~i~v~~~~~~~----~~-~~~~---~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~iw  134 (317)
                       +  .++.|.-|.+....    .. ....   .+. .....-..|.|.|+|. ++++.+.             .|.|.-.
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEE
Confidence             2  34556666655421    11 1111   121 1112345689999997 5555432             3566656


Q ss_pred             EcCCCc-------eeEEee-ccccceEEEEEecCCCCeEEEE-eCCCeEEEEeCCCCC------------------ceee
Q 021121          135 TVDRPT-------SVRTFK-EHAYCVYNATWNPRHSDVFCSA-SGDCTLRIWDVREMG------------------STMI  187 (317)
Q Consensus       135 d~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~------------------~~~~  187 (317)
                      +.+..-       ....+. ++ .....++|+|+ +.+.++- +.++.=.|--++.+.                  ++..
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             eCCCCccCCCCCCCCeEEeeCC-CCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            654320       011222 33 34678999997 6666543 223322222222221                  1112


Q ss_pred             eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCC---ccEEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR---VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       188 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      +..+......++|.  ++.++...-..+.|....+....   .....+.+....+..++..|+|.-++++...||
T Consensus       258 ~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          258 WSTDEASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             ECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             cCCCCCCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence            22121244566665  46667666666777777776532   112333444467888999999873333333343

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.46  E-value=0.026  Score=45.11  Aligned_cols=181  Identities=9%  Similarity=0.079  Sum_probs=84.4

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC----CC-------EEEEEEcCCCceeE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW----DD-------TVKLWTVDRPTSVR  143 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg-------~v~iwd~~~~~~~~  143 (317)
                      +++.|+.  .+..||..+. .... .................++. +++.|+.    ++       .+.+||..+.+-..
T Consensus        18 i~~~GG~--~~~~yd~~~~-~W~~-~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   92 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMEN-ECYL-TALAEQIPRNHSSIVTQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG   92 (318)
T ss_dssp             EEEECSS--EEEEEETTTT-EEEE-EEECTTSCSSEEEEECSSSC-EEEEESSCC-------CCCBEEEEEETTTTEEEE
T ss_pred             hhhcccc--ceEEECCCCC-ceec-ccCCccCCccceEEEEECCE-EEEECCcccCccccCCCccccEEEEeCCCCcEEE
Confidence            4444443  3778887654 1111 11111111112222233444 7777773    12       27788887654321


Q ss_pred             --EeeccccceEEEEEecCCCCeEEEEeCC-------CeEEEEeCCCCCcee--eeccCccceEEEEecCCCCcEEEEEe
Q 021121          144 --TFKEHAYCVYNATWNPRHSDVFCSASGD-------CTLRIWDVREMGSTM--IIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       144 --~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                        .+...........+  + +.+++.|+.+       ..+.+||+.+.+=..  .++..... .+++. . ++.+++.|+
T Consensus        93 ~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG  166 (318)
T 2woz_A           93 LPPLPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-H-NGMIYCLGG  166 (318)
T ss_dssp             CSCBSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-E-TTEEEEECC
T ss_pred             CCCCCccccccceEEE--C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-E-CCEEEEEcC
Confidence              11111111122222  3 6777777754       357888987653211  11111111 12222 2 677777776


Q ss_pred             cC------CcEEEEEccCCCccEEEEecCC--CceeEEEecCCCCeeEEeeecC-----CeEEEEeccccc
Q 021121          213 VD------KSIKIWDVRNYRVPIAVLNGHG--YAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVED  270 (317)
Q Consensus       213 ~d------~~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  270 (317)
                      .+      ..+.+||..+.+  -..+....  ..-.+++.. +++ +++.|+.+     ..+.+||+.+.+
T Consensus       167 ~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          167 KTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIH-KGK-IVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEE-CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence            42      358999988753  22222111  111122222 444 66777643     347788887765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.44  E-value=0.037  Score=45.78  Aligned_cols=236  Identities=15%  Similarity=0.171  Sum_probs=148.2

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      +.-.+|.  ..+++--.       ...+.|||++...    .+..+...+.|.-=.|-.+  +.|+..+ +..|.-|++.
T Consensus        70 sAIMnP~--~~iiALra-------g~~lQiFnle~K~----klks~~~~e~VvfWkWis~--~~l~lVT-~taVyHWsi~  133 (494)
T 1bpo_A           70 SAIMNPA--SKVIALKA-------GKTLQIFNIEMKS----KMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSME  133 (494)
T ss_dssp             EEEECSS--SSCEEEEE-------TTEEEEEETTTTE----EEEEEECSSCCCEEEEEET--TEEEEEC-SSEEEEEESS
T ss_pred             eeeeCCC--CcEEEEec-------CCeEEEEchHHhh----hhcceecCCCceEEEecCC--CeEEEEc-CCeeEEeccc
Confidence            5567784  34444333       4599999998764    4555566777888888765  3566654 4579999987


Q ss_pred             CCCCCCCceeeccC----CcceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEEeeccccceEEEEEecC-
Q 021121           92 LPPTANPIRSLHEH----TREVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR-  160 (317)
Q Consensus        92 ~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-  160 (317)
                      .  ...+.+.+..|    ...|..-..+++.+-++++|-      -.|.+.+|..+.+ ..+.+.+|......+....+ 
T Consensus       134 ~--~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~  210 (494)
T 1bpo_A          134 G--ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNA  210 (494)
T ss_dssp             S--SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCS
T ss_pred             C--CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCC
Confidence            5  33555555544    345666667888774555542      2478899998754 45667778776655544321 


Q ss_pred             -CCCeEEEEeC---CCeEEEEeCCCC---Ccee---e----ec--cCccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          161 -HSDVFCSASG---DCTLRIWDVREM---GSTM---I----IP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       161 -~~~~l~~~~~---dg~i~i~d~~~~---~~~~---~----~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                       ...+++.+..   .+++++.++...   .+..   .    ++  ....-..++..++ .-..+..-+.-|.|++||+.+
T Consensus       211 ~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEeccc
Confidence             1124444444   378999998543   1111   0    11  1123356788888 677888888999999999999


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      +.. +..-+-....|..-+.+..... +++....|.|.--.+...
T Consensus       290 gt~-i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          290 GTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             CCE-EEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTT
T ss_pred             cee-eeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccc
Confidence            875 5555555566666665555443 555567887766665544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.36  E-value=0.046  Score=45.19  Aligned_cols=270  Identities=12%  Similarity=0.012  Sum_probs=129.4

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCc--eEEEEecCCCCCcceeeee---ec---------CCCCeeEEEecCCC
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNG--RVHVLDLSPAAPALTELVA---FD---------TADGVYDLAWSESH   72 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g--~i~i~~~~~~~~~~~~~~~---~~---------~~~~v~~~~~~~~~   72 (317)
                      ...|.+|.+.|..++.+.+++.       .|  .-.||...........+..   +.         ....|.++++.|.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~-------~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  126 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAAR-------TGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHAS  126 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEE-------C--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTT
T ss_pred             CCceEEEEECCCCCCeEEEEec-------CCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCC
Confidence            3568899999855666666665       22  1123333333322332221   11         11257789998742


Q ss_pred             -CCeEEEEEcCCeEEEEEeCCCCCCCCceeec----------------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEE
Q 021121           73 -DSLLIAAVADGSVKIYDTALPPTANPIRSLH----------------EHTREVHSADYNPTRRDSFITSSWDDTVKLWT  135 (317)
Q Consensus        73 -~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  135 (317)
                       +..+.++...+.|...+ +.++..+.+....                .....+.+|.+.|.....++.+..++.|...+
T Consensus       127 ~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~  205 (394)
T 3b7f_A          127 EPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST  205 (394)
T ss_dssp             STTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES
T ss_pred             CCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC
Confidence             34566666666544332 1222222221111                11245788999885433455555455554432


Q ss_pred             cCCCceeEEeecc-------------ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc--Cc---cceEE
Q 021121          136 VDRPTSVRTFKEH-------------AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA--HE---FEILA  197 (317)
Q Consensus       136 ~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~  197 (317)
                       +.++.-..+...             ...+.++.+.|.++..+..+...+ |...+- .++.-..+..  ..   ..+.+
T Consensus       206 -DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~  282 (394)
T 3b7f_A          206 -DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFP  282 (394)
T ss_dssp             -STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEE
T ss_pred             -CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEE
Confidence             223332222110             134889999987567777777655 444432 2222222211  11   23567


Q ss_pred             EEecCCCCcEEEEEec-----------CCcEEEEEccCCCccEEEEe-cCCC-------ceeEEEecCCCCeeEEeeecC
Q 021121          198 CDWNKYDDCLIASASV-----------DKSIKIWDVRNYRVPIAVLN-GHGY-------AVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       198 i~~~~~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~-~~~~-------~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      +.++|.+...+.++..           ++...+|...........+. +-..       ....++++|.....|+.++.+
T Consensus       283 i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~  362 (394)
T 3b7f_A          283 IVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTG  362 (394)
T ss_dssp             EEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTT
T ss_pred             EEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCC
Confidence            8888744444554432           33355666555322233322 1110       113588888643345566655


Q ss_pred             CeEEEEecccccceeeeeecccceeEeEEEE
Q 021121          259 MTVCLWDFMVEDALVGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       259 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  289 (317)
                      +.|..-  .........+..+-..+.+++|.
T Consensus       363 g~l~~S--~D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          363 GEIWAS--ADEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             SCEEEE--SSTTSBCEEEECSCSCEEEEEEE
T ss_pred             CeEEEE--CCCCCCceEcccCCCCeeEEEEe
Confidence            554432  22222223333333446666664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.29  E-value=0.056  Score=44.72  Aligned_cols=257  Identities=10%  Similarity=0.118  Sum_probs=154.8

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ...|.|.|+.......+  ....    --+.-.+|.. +.+|.-. ..+++|+|++..   ..+....- ...|.-=.|-
T Consensus        47 ~~~vvIiDl~~~~~~~r--rpi~----AdsAIMnP~~-~iiALra-g~~lQiFnle~K---~klks~~~-~e~VvfWkWi  114 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIR--RPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMK---SKMKAHTM-TDDVTFWKWI  114 (494)
T ss_dssp             CCEEEEEETTSTTSCEE--EECC----CSEEEECSSS-SCEEEEE-TTEEEEEETTTT---EEEEEEEC-SSCCCEEEEE
T ss_pred             CCeEEEEECCCCCccee--cccc----cceeeeCCCC-cEEEEec-CCeEEEEchHHh---hhhcceec-CCCceEEEec
Confidence            44789999987653211  1111    2244578876 5776665 789999999865   44444443 3456555665


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeecc----ccceEEEEEecCCCCeEE-EEe------CCCeEEEEeCCCCC
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEH----AYCVYNATWNPRHSDVFC-SAS------GDCTLRIWDVREMG  183 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~~  183 (317)
                      .+.  .|+-.+ +..|+-|+++.. .+.+.+..|    ...|..-..+++ .+.++ +|-      -.|.+.+|..+. +
T Consensus       115 s~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~er-~  189 (494)
T 1bpo_A          115 SLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDR-K  189 (494)
T ss_dssp             ETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEESTT-C
T ss_pred             CCC--eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCC-CCeEEEEeecccCCcccceEEEeeccc-c
Confidence            443  455555 468999999753 455566544    346777777887 44444 332      247889999875 4


Q ss_pred             ceeeeccCccceEEEEecCC--CCcEEEEEecC---CcEEEEEccCC---CccE--EEE---e---cCCCceeEEEecCC
Q 021121          184 STMIIPAHEFEILACDWNKY--DDCLIASASVD---KSIKIWDVRNY---RVPI--AVL---N---GHGYAVRKVKFSPH  247 (317)
Q Consensus       184 ~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~d---~~i~v~d~~~~---~~~~--~~~---~---~~~~~v~~~~~~~~  247 (317)
                      ..+.+.+|......+.....  ...+++.+...   +.+++.++...   ..+.  ...   -   ....-.-++..++.
T Consensus       190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k  269 (494)
T 1bpo_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (494)
T ss_dssp             CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred             ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence            45667777766655554321  12344444432   78999998543   1111  111   1   11233457888888


Q ss_pred             CCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       248 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      .. +++.-..-|.|++||+.++..+ ..-+-....|..-+-... ..=++.....|.|.--.++.
T Consensus       270 yg-viyviTK~G~i~lyDleTgt~i-~~nrIs~~~iF~t~~~~~-~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          270 HD-VVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPHEA-TAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             TT-EEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETT-TTEEEEEETTCEEEEEEECT
T ss_pred             CC-EEEEEecCceEEEEecccceee-eeecccCCceEEecccCC-CCcEEEEccCceEEEEEEcc
Confidence            77 7888889999999999999744 344444555555444444 33455555777776555544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.25  E-value=0.034  Score=41.39  Aligned_cols=177  Identities=8%  Similarity=-0.089  Sum_probs=95.5

Q ss_pred             EEEEEcCCCEEEEEEcCCCc------eeEEeec-cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc
Q 021121          121 SFITSSWDDTVKLWTVDRPT------SVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF  193 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (317)
                      +|++...| +++.=.+.++.      ....+.. .=..+..++|+|+ +.+.++  .+|.++-.+..+.....-+. ...
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t   80 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMG-RAK   80 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHH-HCE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccc-ccc
Confidence            66777777 66554444433      1122221 1236789999996 776666  77887777765432211111 122


Q ss_pred             c--------eEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc------EEEEecCCCceeEEEecCCCCeeEEeeecCC
Q 021121          194 E--------ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP------IAVLNGHGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       194 ~--------v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      .        ..++.|.| ++.+.++  .||.|+-++-.+....      ...-..-=..+..|.+.|+|.  |.+.. |+
T Consensus        81 ~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~--Lyav~-dg  154 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY--LYAVH-GQ  154 (236)
T ss_dssp             EEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC--EEEEE-TT
T ss_pred             EecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce--EEEEe-CC
Confidence            2        47889999 8988887  5698988876432211      111111124678999999996  55555 88


Q ss_pred             eEEEEeccccc-----ceeeeee-cccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          260 TVCLWDFMVED-----ALVGRYD-HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       260 ~i~vwd~~~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+.-....+..     .....+. ..-..-+-+.|.++ +.+.+..  +|  ++|....+
T Consensus       155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~-G~l~~v~--~g--~~Y~~~~p  209 (236)
T 1tl2_A          155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV-GTLFGVQ--GG--KFYEDYPP  209 (236)
T ss_dssp             EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT-SCEEEEE--TT--EEEEESCC
T ss_pred             cEEecCCCCCCCcccccccceeccCCcceEEEEEECCC-CcEEEEe--CC--eEEecCCc
Confidence            75433322111     0011111 11223344667775 4444444  77  55655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.23  E-value=0.054  Score=43.20  Aligned_cols=214  Identities=7%  Similarity=0.065  Sum_probs=98.6

Q ss_pred             eEEEEecCCCCCcceeeeeec--CCCCeeEEEecCCCCCeEEEEEc----CC-------eEEEEEeCCCCCCCCceeecc
Q 021121           38 RVHVLDLSPAAPALTELVAFD--TADGVYDLAWSESHDSLLIAAVA----DG-------SVKIYDTALPPTANPIRSLHE  104 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~v~~~~~~~~~~~~~~~~~  104 (317)
                      .+..||......  ... ...  ....-.+++ ..++ .+++.|+.    ++       .+.+||..+. ....+..+..
T Consensus        25 ~~~~yd~~~~~W--~~~-~~~~~~~r~~~~~~-~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~   98 (318)
T 2woz_A           25 AAVAYDPMENEC--YLT-ALAEQIPRNHSSIV-TQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLPPLPS   98 (318)
T ss_dssp             EEEEEETTTTEE--EEE-EECTTSCSSEEEEE-CSSS-CEEEEESSCC-------CCCBEEEEEETTTT-EEEECSCBSS
T ss_pred             ceEEECCCCCce--ecc-cCCccCCccceEEE-EECC-EEEEECCcccCccccCCCccccEEEEeCCCC-cEEECCCCCc
Confidence            578888876652  221 111  122222333 2334 57777763    12       1666776543 2222222221


Q ss_pred             CCcceEEEEEecCCCCEEEEEcCC-------CEEEEEEcCCCceeEE--eeccccceEEEEEecCCCCeEEEEeC-----
Q 021121          105 HTREVHSADYNPTRRDSFITSSWD-------DTVKLWTVDRPTSVRT--FKEHAYCVYNATWNPRHSDVFCSASG-----  170 (317)
Q Consensus       105 ~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~-----  170 (317)
                      .......+.+  ++. +++.|+.+       ..+.+||+.+.+-...  +.........+.  .+ +.+++.|+.     
T Consensus        99 ~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~-~~iyv~GG~~~~~~  172 (318)
T 2woz_A           99 ARCLFGLGEV--DDK-IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HN-GMIYCLGGKTDDKK  172 (318)
T ss_dssp             CBCSCEEEEE--TTE-EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ET-TEEEEECCEESSSC
T ss_pred             cccccceEEE--CCE-EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--EC-CEEEEEcCCCCCCC
Confidence            1111122222  344 66666643       3588888877643221  111111111222  23 667777764     


Q ss_pred             -CCeEEEEeCCCCCce--eeeccCccceEEEEecCCCCcEEEEEecC-----CcEEEEEccCCCccEEEEecCCC--cee
Q 021121          171 -DCTLRIWDVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVD-----KSIKIWDVRNYRVPIAVLNGHGY--AVR  240 (317)
Q Consensus       171 -dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~--~v~  240 (317)
                       -..+.+||+.+.+=.  ..+...... .+++..  ++.+++.|+.+     ..+.+||+.+.+  -..+.....  .-.
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~  247 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSI  247 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSC
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccce
Confidence             235899998875321  111111111 122222  56777777654     347788887654  222221111  111


Q ss_pred             EEEecCCCCeeEEeeecC--------------CeEEEEeccccc
Q 021121          241 KVKFSPHRRNLLASCSYD--------------MTVCLWDFMVED  270 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d--------------~~i~vwd~~~~~  270 (317)
                      +++.. +++ +++.|+.+              ..+.+||+.+.+
T Consensus       248 ~~~~~-~~~-i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          248 SLVSL-AGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EEEEE-TTE-EEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EEEEE-CCE-EEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            22222 344 67777654              347778877654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.21  E-value=0.12  Score=46.82  Aligned_cols=228  Identities=8%  Similarity=-0.001  Sum_probs=126.7

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-ccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ...|.+|.-..+|  .|-.|+.+| +..||-...   +..... ......|.++....++  .|..|+.+| +..||..+
T Consensus        21 ~n~V~~I~qD~~G--~lWigT~~G-L~ryDG~~~---~~~~~~~~~~~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEG--LIWIGSNKG-LFSYDGYST---QQHFTYGENNNTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTS--CEEEEESSC-EEEECSSCE---EECSCTTSTTSSCEEEEEEETTT--EEEEEETTE-EEEEETTT
T ss_pred             cceEEEEEECCCC--CEEEEECCC-ccccCCCce---EEEEccCCCCCceEEEEEEcCCC--cEEEEeCCC-eEEEeCCC
Confidence            4578999888776  677788888 666663211   100000 1123568888777665  466666555 78899877


Q ss_pred             CceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-----cCccceEEEEecCCCCcEEEEEec
Q 021121          139 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-----AHEFEILACDWNKYDDCLIASASV  213 (317)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~  213 (317)
                      .+...........|.++.. .+ + .+..++.+ .|..+|..+.+.. .+.     .....|.++...+ ++.+.+ ++.
T Consensus        92 ~~f~~~~~~~~~~i~~i~~-~~-g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~  164 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMAL-QG-D-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTY  164 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEE-ET-T-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECT-TCCEEE-EET
T ss_pred             CEEECcccCCCceEEEEEe-cC-C-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcC-CCCEEE-EeC
Confidence            5432211112234666654 23 4 45556665 5888998765432 221     1234578888776 666554 444


Q ss_pred             CCcEEEEEccCCCccEEEEec------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          214 DKSIKIWDVRNYRVPIAVLNG------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      + -+..||..+.+  ...+..      ....|.++...+++.. |..|.. +-+..+|..+.+ ...........|.++.
T Consensus       165 ~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~-~~~~~~l~~~~i~~i~  238 (758)
T 3ott_A          165 N-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQ-IKQTEAFHNNSIKSLA  238 (758)
T ss_dssp             T-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTE-EEEEEEEEEEEEEEEE
T ss_pred             C-CHhhCccCCCc--eEEecCCCccccccceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCe-EEeccCCCCCeEEEEE
Confidence            4 47788876543  222211      1224788888776663 444554 457788876654 2111111234577776


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ...+ + .|..|+.+| +.+++...
T Consensus       239 ~d~~-g-~lWigT~~G-l~~~~~~~  260 (758)
T 3ott_A          239 LDGN-G-DLLAGTDNG-LYVYHNDT  260 (758)
T ss_dssp             ECTT-C-CEEEEETTE-EEEECCTT
T ss_pred             EcCC-C-CEEEEeCCc-eeEEecCC
Confidence            6654 3 444455444 66776543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.10  E-value=0.051  Score=40.50  Aligned_cols=147  Identities=7%  Similarity=-0.055  Sum_probs=81.3

Q ss_pred             cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee------EEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121          107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV------RTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      ..+..++|+|++. +.++  .+|.+.-.+..+.+..      ..+- .--....++.|.|+ +.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~-G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN-GYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT-SCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCC-CCEEEe--CCCEEEEeCC
Confidence            3677999999886 4444  6788777776542221      1111 01112478899998 776666  5699988876


Q ss_pred             CCCCcee------ee-ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-----cEEEEe-cCCCceeEEEecC
Q 021121          180 REMGSTM------II-PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-----PIAVLN-GHGYAVRKVKFSP  246 (317)
Q Consensus       180 ~~~~~~~------~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~-~~~~~v~~~~~~~  246 (317)
                      .+.....      .+ ..-=..+..+.+.| ++.+.++.  |+.++-........     ....+. ..-..-+-+.|.|
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            4322111      11 11114578999999 99888776  77654332221110     011111 2222345577888


Q ss_pred             CCCeeEEeeecCCeEEEEecc
Q 021121          247 HRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      ++. +.+ .. ++  ++|...
T Consensus       192 ~G~-l~~-v~-~g--~~Y~~~  207 (236)
T 1tl2_A          192 VGT-LFG-VQ-GG--KFYEDY  207 (236)
T ss_dssp             TSC-EEE-EE-TT--EEEEES
T ss_pred             CCc-EEE-Ee-CC--eEEecC
Confidence            886 343 33 66  444433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.07  E-value=0.11  Score=43.87  Aligned_cols=107  Identities=8%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-------CCCCeeEEEecCC---CCCeEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-------TADGVYDLAWSES---HDSLLI   77 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~---~~~~l~   77 (317)
                      ....+|+|.|  +++++++...      .++|++++.....  ...+..+.       .......|+|+|+   +..+.+
T Consensus        27 ~~P~~~a~~p--dG~l~V~e~~------gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           27 NKPHALLWGP--DNQIWLTERA------TGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             SSEEEEEECT--TSCEEEEETT------TCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEcC--CCcEEEEEcC------CCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            4567899999  6888887652      3478888754332  22222221       2456789999995   433444


Q ss_pred             EEEc------------CCeEEEEEeCCCCC----CCCce-eec-cCCcceEEEEEecCCCCEEEEE
Q 021121           78 AAVA------------DGSVKIYDTALPPT----ANPIR-SLH-EHTREVHSADYNPTRRDSFITS  125 (317)
Q Consensus        78 ~~~~------------dg~i~v~~~~~~~~----~~~~~-~~~-~~~~~v~~~~~~~~~~~~l~~~  125 (317)
                      +-+.            ...|.-+++.....    .+.+. .+. ........|+|.|+|. ++++.
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~  161 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTI  161 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEE
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEE
Confidence            3332            23455555543210    01111 111 1123468899999998 55543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.05  E-value=0.038  Score=44.92  Aligned_cols=92  Identities=8%  Similarity=0.038  Sum_probs=42.7

Q ss_pred             CeEEEEEc-CCeEEEEEeCC-CCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcC-C---------CEEEEEEcCCCc
Q 021121           74 SLLIAAVA-DGSVKIYDTAL-PPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSW-D---------DTVKLWTVDRPT  140 (317)
Q Consensus        74 ~~l~~~~~-dg~i~v~~~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-d---------g~v~iwd~~~~~  140 (317)
                      .+++.|+. ...+.+||... ......+..+. ........+.+  ++. +++.|+. +         ..+.+||+.+.+
T Consensus        21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTE-EEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCE-EEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            45555554 34677888753 12233232222 11111222222  344 6666665 2         468899988764


Q ss_pred             eeE--Eee-ccccceEEEEEecCCCCeEEEEeCC
Q 021121          141 SVR--TFK-EHAYCVYNATWNPRHSDVFCSASGD  171 (317)
Q Consensus       141 ~~~--~~~-~~~~~v~~~~~~~~~~~~l~~~~~d  171 (317)
                      -..  .+. .......++.  .+ +.+++.|+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~~--~~-~~iyv~GG~~  128 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFV--HN-GKAYVTGGVN  128 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEE--ET-TEEEEEECCC
T ss_pred             EEECCCCCCcccccceEEE--EC-CEEEEEeCcC
Confidence            221  111 1111122222  33 6777788754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.98  E-value=0.16  Score=48.64  Aligned_cols=234  Identities=14%  Similarity=0.171  Sum_probs=133.1

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      +.-.+|  ...+++--.       ...+.|||+....    .+..+..+++|.-=.|-.+.  .|+..+ +..|.-|++.
T Consensus        70 sAIMnP--~~~iiALra-------g~~lQiFnl~~k~----klks~~~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~  133 (1630)
T 1xi4_A           70 SAIMNP--ASKVIALKA-------GKTLQIFNIEMKS----KMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSME  133 (1630)
T ss_pred             hhccCC--CcceEEEec-------CCeEEEeehHHhh----hhcccccCCCceEEEecCCC--eeEEEc-CCeEEEeccC
Confidence            344677  334444333       4589999998765    34444556678777887553  555554 4569999996


Q ss_pred             CCCCCCCceeeccC----CcceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEEeeccccceEEEEEe--c
Q 021121           92 LPPTANPIRSLHEH----TREVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN--P  159 (317)
Q Consensus        92 ~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~  159 (317)
                      .  ...+...+..|    ...|..-..+++.+-++++|-      -.|.+.+|..+.+ ..+.+.+|.+....+...  +
T Consensus       134 ~--~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~  210 (1630)
T 1xi4_A          134 G--ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNA  210 (1630)
T ss_pred             C--CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCC
Confidence            4  33455545444    345666667788775555552      3588899988754 334455665544444332  2


Q ss_pred             CCCCeEEEEeC---CCeEEEEeCCCC---Cceee-------ecc--CccceEEEEecCCCCcEEEEEecCCcEEEEEccC
Q 021121          160 RHSDVFCSASG---DCTLRIWDVREM---GSTMI-------IPA--HEFEILACDWNKYDDCLIASASVDKSIKIWDVRN  224 (317)
Q Consensus       160 ~~~~~l~~~~~---dg~i~i~d~~~~---~~~~~-------~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~  224 (317)
                      ....+++.+..   .+++++.++...   .+...       ++.  ...-..++..++ .-..+..-+.-|.|++||+.+
T Consensus       211 ~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEeccc
Confidence            21233333322   378999988543   11111       111  122245777887 666777888899999999999


Q ss_pred             CCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      +.. +..-+-...+|...+-+..... +++....|.|.--.+.
T Consensus       290 ~~~-i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          290 GTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             chh-hhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEc
Confidence            774 4333333444444444433222 3334455655444443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.12  Score=41.44  Aligned_cols=191  Identities=9%  Similarity=-0.016  Sum_probs=97.7

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeeccC-CcceEEEEE--ecCCCCEEEEE-cCCCEEEEEEcCCCceeEEeecc-
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHEH-TREVHSADY--NPTRRDSFITS-SWDDTVKLWTVDRPTSVRTFKEH-  148 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~-  148 (317)
                      .++++++.||.|.-+|.+++   +....++.. ..++....-  .+.+...++.. ..||.|..++.++|.....+... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            37888899999999988766   444444332 122221110  01122133333 68999999999888554443321 


Q ss_pred             ---ccceEE---EEE-e----cCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc--c-----eEEEEec----CCCCc
Q 021121          149 ---AYCVYN---ATW-N----PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF--E-----ILACDWN----KYDDC  206 (317)
Q Consensus       149 ---~~~v~~---~~~-~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~-----v~~i~~~----~~~~~  206 (317)
                         ..++..   ... .    .. +..+++++.+|.+.-.|+++++.+..+.....  .     -.|....    ...+.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             HHTTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred             ceeccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence               111211   000 0    02 56788999999999999999999888763211  0     0111111    01234


Q ss_pred             EEEEEecCCcEEEEEccCCCcc---EEEEecCCCc--e-eEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121          207 LIASASVDKSIKIWDVRNYRVP---IAVLNGHGYA--V-RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       207 ~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~--v-~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                      .++.+..+..+.+.+ ++++.-   ..........  + .+-..+.++. + +.++.||.|..+|..++..
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v~A~d~~~G~~  234 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSLLASDLDFRIA  234 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEEEEECSTTCCE
T ss_pred             eEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCc-E-EEECCCCEEEEEECCCCcE
Confidence            566666666666666 333210   1111111000  0 0000112354 3 4467788888888776663

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=96.60  E-value=0.41  Score=43.57  Aligned_cols=153  Identities=12%  Similarity=0.089  Sum_probs=81.4

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc----CCcceEEEEEecCCCCEEEEEcCCCE----E
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE----HTREVHSADYNPTRRDSFITSSWDDT----V  131 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~----v  131 (317)
                      ...|.+|+++|..+..+.++...+.|...+ +.++..+++.....    ....+.++++.|.....++.+..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            457999999998667788888777655443 22222222221110    23469999999864434555432211    2


Q ss_pred             EEE-EcCCCceeEEeecc-------c--cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeecc------Cccce
Q 021121          132 KLW-TVDRPTSVRTFKEH-------A--YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA------HEFEI  195 (317)
Q Consensus       132 ~iw-d~~~~~~~~~~~~~-------~--~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v  195 (317)
                      .|| ..+.++.-..+...       .  ..+..+++.|.+.+.++.+...+.|.. ....++.-..+..      ....+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence            233 33344433333210       1  135678888875667777764444322 2222332222221      12457


Q ss_pred             EEEEecCCCCcEEEEEecC
Q 021121          196 LACDWNKYDDCLIASASVD  214 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d  214 (317)
                      ..+.++|.++..++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            8899988666566666554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.41  E-value=0.41  Score=46.01  Aligned_cols=205  Identities=9%  Similarity=0.076  Sum_probs=116.2

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec--CCCCeeEEEecCCCCCeEEEEE-
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD--TADGVYDLAWSESHDSLLIAAV-   80 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-   80 (317)
                      +..+.+|.-=.|-.  +..++..+.        ..|+-|++.....+.+......  ....|..-.-+++..-++++|- 
T Consensus       102 ~~~~e~VvfWkWis--~~~l~lVT~--------~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~  171 (1630)
T 1xi4_A          102 HTMTDDVTFWKWIS--LNTVALVTD--------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS  171 (1630)
T ss_pred             cccCCCceEEEecC--CCeeEEEcC--------CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeec
Confidence            34445566666766  566766664        4999999975332222111110  1356777777888754555543 


Q ss_pred             -----cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe--cCCCCEEEEEcC---CCEEEEEEcCCC---ceeE----
Q 021121           81 -----ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN--PTRRDSFITSSW---DDTVKLWTVDRP---TSVR----  143 (317)
Q Consensus        81 -----~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---dg~v~iwd~~~~---~~~~----  143 (317)
                           -.|.+.+|..+..    ....+.+|.+....+...  +....+++.+..   .+.++|.++...   ....    
T Consensus       172 ~~~~~v~G~mQLyS~er~----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~  247 (1630)
T 1xi4_A          172 AQQNRVVGAMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA  247 (1630)
T ss_pred             cCCCcccceeeeeecccc----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccc
Confidence                 3488999998753    334455665554444332  111112222221   268888888543   1100    


Q ss_pred             --Eee---ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEE
Q 021121          144 --TFK---EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK  218 (317)
Q Consensus       144 --~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  218 (317)
                        .+.   ...+-..++..++. ..++..-+.-|.+++||+.++..+..-+-...+|...+.++..+..+ .....|.|.
T Consensus       248 ~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~-~vnr~G~vl  325 (1630)
T 1xi4_A          248 VDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVL  325 (1630)
T ss_pred             ccccCCcccccCcceEEEeccc-cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceE-EEcCCceEE
Confidence              011   12344567778877 67788889999999999999988766554455555555444233333 334566555


Q ss_pred             EEEccC
Q 021121          219 IWDVRN  224 (317)
Q Consensus       219 v~d~~~  224 (317)
                      -..+..
T Consensus       326 ~v~v~~  331 (1630)
T 1xi4_A          326 SVCVEE  331 (1630)
T ss_pred             EEEEcc
Confidence            555443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=96.31  E-value=0.62  Score=42.42  Aligned_cols=158  Identities=11%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec-----CCCCeeEEEecCCCCCeEEEEEc
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD-----TADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ...|.+|+++|.+++.+.+++.       .|.|.  .........+.+....     ....+.+|++.|..+..+.++..
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~-------~ggv~--rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g   84 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTD-------IGGAY--RWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQG   84 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEES-------SSCEE--EEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred             CCcEEEEEECCCCCCEEEEEec-------CCCEE--EecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeC
Confidence            4689999999976677777664       44443  3333333333332110     12469999999865455655543


Q ss_pred             CCe----EEEEEeCC-CCCCCCcee-ec-----cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec---
Q 021121           82 DGS----VKIYDTAL-PPTANPIRS-LH-----EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE---  147 (317)
Q Consensus        82 dg~----i~v~~~~~-~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---  147 (317)
                      +..    -.||.-.. ++..+.+.. +.     .....+..+++.|.....++.+...+.|. ...+.++.-..+..   
T Consensus        85 ~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~  163 (789)
T 1sqj_A           85 RYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPD  163 (789)
T ss_dssp             SCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCC
T ss_pred             ccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCcc
Confidence            311    34444332 222222211 00     00113556788876544666666444332 12233333333321   


Q ss_pred             ---cccceEEEEEecCCCCeEEEEeCC-CeE
Q 021121          148 ---HAYCVYNATWNPRHSDVFCSASGD-CTL  174 (317)
Q Consensus       148 ---~~~~v~~~~~~~~~~~~l~~~~~d-g~i  174 (317)
                         ....+..+.++|.++..++++..+ +.|
T Consensus       164 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v  194 (789)
T 1sqj_A          164 AFTNGIGYTSVIFDPERNGTIYASATAPQGM  194 (789)
T ss_dssp             CCSTTTCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred             ccCCCCCeEEEEECCCCCCEEEEEEcCCCeE
Confidence               124578899998766666666654 444

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.17  E-value=0.33  Score=43.48  Aligned_cols=191  Identities=8%  Similarity=0.035  Sum_probs=96.9

Q ss_pred             CeEEEEEcC----CeEEEEEeCCCCCCCCce-e-----eccCCcceEEEEEec-CCCCEEEEEcCC------CEEEEEEc
Q 021121           74 SLLIAAVAD----GSVKIYDTALPPTANPIR-S-----LHEHTREVHSADYNP-TRRDSFITSSWD------DTVKLWTV  136 (317)
Q Consensus        74 ~~l~~~~~d----g~i~v~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~v~iwd~  136 (317)
                      .+++.|+.+    ..+.+||..+. .+..+. .     ....... .+++..+ ++. +++.|+.+      ..+.+||+
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~-~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYD-KIDMKNIEVSSSEVPVARMC-HTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSS-CEEEEECCCCCSCCCCCCBS-CEEEEETTTTE-EEEECCBSSTTCBCCCCEEEET
T ss_pred             EEEEECCCCCCCcCcEEEEECCCC-eEEEeccCCCCCCCCccccc-eEEEEEccCCE-EEEEcCCCCCCCccccEEEEeC
Confidence            577777653    45888888754 222222 1     1111111 2233332 555 67777643      35788898


Q ss_pred             CCCceeE--EeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceee-----eccCccceEEEEecCCCCcE
Q 021121          137 DRPTSVR--TFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMI-----IPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       137 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~  207 (317)
                      .+.+-..  .+......- +.+...+ +.+++.|+.++  .+.+||+.+.+=...     .........++.+....+.+
T Consensus       476 ~t~~W~~~~~~p~~R~~h-~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRH-SACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSC-EEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccc-eEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            8753221  111111111 2222224 78888887655  689999887531111     11112222335555523778


Q ss_pred             EEEEecC-------CcEEEEEccCCCc--c--EEEEec---CCCceeEEEecCCCCeeEEeeec--------CCeEEEEe
Q 021121          208 IASASVD-------KSIKIWDVRNYRV--P--IAVLNG---HGYAVRKVKFSPHRRNLLASCSY--------DMTVCLWD  265 (317)
Q Consensus       208 l~~~~~d-------~~i~v~d~~~~~~--~--~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~--------d~~i~vwd  265 (317)
                      ++.|+.+       ..+.+||+.+..-  .  ...+..   ....-.+++...+++ +++.|+.        ...+.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeEEEEE
Confidence            8888762       3588999887651  0  111111   111111233333354 6777774        34589999


Q ss_pred             ccccc
Q 021121          266 FMVED  270 (317)
Q Consensus       266 ~~~~~  270 (317)
                      +.+.+
T Consensus       633 ~~t~~  637 (695)
T 2zwa_A          633 PLSET  637 (695)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            88765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.09  E-value=0.43  Score=38.54  Aligned_cols=231  Identities=11%  Similarity=0.063  Sum_probs=122.8

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee----ccCCcceEEEEEecC---CCCEEEEE---cCCC
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL----HEHTREVHSADYNPT---RRDSFITS---SWDD  129 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~---~~dg  129 (317)
                      -.....|+|.|++ .++++--..|.|++++...+ ....+..+    .........|+++|+   +. .|+..   ..++
T Consensus        31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g-~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~  107 (347)
T 3das_A           31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTG-RKTELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDN  107 (347)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSE
T ss_pred             CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCC-cEeeecccCceeecCCCCceeeEeccccccCC-EEEEEEecCCCC
Confidence            4467899999998 45555444899988875433 11112111    123456789999985   33 34332   3456


Q ss_pred             EEEEEEcCCCc----------ee-EEee-ccccceEEEEEecCCCCeEEEEeC-------------CCeEEEEeCCCC--
Q 021121          130 TVKLWTVDRPT----------SV-RTFK-EHAYCVYNATWNPRHSDVFCSASG-------------DCTLRIWDVREM--  182 (317)
Q Consensus       130 ~v~iwd~~~~~----------~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--  182 (317)
                      .|.-|.+..+.          .+ ..+. ........|.|.|+ +.+.++.+.             .|.|.-.+....  
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpD-G~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPD-KMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTT-SCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCC-CCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            77777765421          11 1121 11223567999998 677766542             355655565432  


Q ss_pred             ------CceeeeccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCC-----------------CccEEEEecCCCc
Q 021121          183 ------GSTMIIPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNY-----------------RVPIAVLNGHGYA  238 (317)
Q Consensus       183 ------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~-----------------~~~~~~~~~~~~~  238 (317)
                            .....-.++.. ...++|+| ++.++++=. .++.=.+--++.+                 ..++..+..+...
T Consensus       187 ~~nPf~~~~i~a~G~RN-p~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          187 PGNPFPGSPVYSYGHRN-VQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             TTCSSTTCCEEEBCCSB-CCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             CCCCCCCCeEEeeCCCC-cceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence                  11111124443 46789999 777665532 2221222222211                 1123333323235


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEecccccc---eeeeeecccceeEeEEEEeccCCeEEEe
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA---LVGRYDHHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                      ...++|.. +. ++...-..+.|....+...+.   ....+.+....+.+++..|+ +.++++.
T Consensus       265 p~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD-G~lyv~t  325 (347)
T 3das_A          265 PSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG-DKLWLVT  325 (347)
T ss_dssp             EEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET-TEEEEEE
T ss_pred             CcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC-CcEEEEE
Confidence            56778773 44 555555555666666654431   12233344567999999998 5655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.2  Score=40.31  Aligned_cols=111  Identities=7%  Similarity=0.044  Sum_probs=69.9

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccc-cceEEEEEe--cCCCCeEEEE-eCCCeEEEEeCCCCCceeeecc----Cc
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHA-YCVYNATWN--PRHSDVFCSA-SGDCTLRIWDVREMGSTMIIPA----HE  192 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~~  192 (317)
                      +++.++.||.|.-+|.++|+...+++... .++....-.  +.++..++.. +.||.|..+|..++.....+..    ..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            78999999999999999999988887541 222221100  1112344343 6899999999887744433321    11


Q ss_pred             cceEEEEecC--------CCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121          193 FEILACDWNK--------YDDCLIASASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       193 ~~v~~i~~~~--------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      .++.. .-.|        ..+..+++|+.++.+...|+++++. +..+.
T Consensus        92 SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~-~W~~~  138 (339)
T 2be1_A           92 SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI-ISAFG  138 (339)
T ss_dssp             CSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCE-EEEES
T ss_pred             ccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcE-EEEEe
Confidence            12221 1000        0456788999999999999999875 55544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.03  E-value=0.79  Score=41.05  Aligned_cols=187  Identities=9%  Similarity=0.084  Sum_probs=95.9

Q ss_pred             EEEEEcCC----CEEEEEEcCCCceeEEe-e-----ccc-cceEEEEEec-CCCCeEEEEeCCC------eEEEEeCCCC
Q 021121          121 SFITSSWD----DTVKLWTVDRPTSVRTF-K-----EHA-YCVYNATWNP-RHSDVFCSASGDC------TLRIWDVREM  182 (317)
Q Consensus       121 ~l~~~~~d----g~v~iwd~~~~~~~~~~-~-----~~~-~~v~~~~~~~-~~~~~l~~~~~dg------~i~i~d~~~~  182 (317)
                      +++.|+.+    ..+.+||+.+++-...- .     ... ..-.+++..+ + +.+++.|+.++      .+.+||+.+.
T Consensus       400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~~t~  478 (695)
T 2zwa_A          400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDMKTR  478 (695)
T ss_dssp             EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred             EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeCCCC
Confidence            77777643    46888998876433222 1     011 1112233332 4 67777777543      4788898764


Q ss_pred             C--ceeeeccCccceEEEEecCCCCcEEEEEecCC--cEEEEEccCCCccEEEEec------CCCceeEEEecCCCCeeE
Q 021121          183 G--STMIIPAHEFEILACDWNKYDDCLIASASVDK--SIKIWDVRNYRVPIAVLNG------HGYAVRKVKFSPHRRNLL  252 (317)
Q Consensus       183 ~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l  252 (317)
                      +  .+..+...... .+++... ++.+++.|+.++  .+.+||..+..  -.....      .......+.+..+...++
T Consensus       479 ~W~~~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          479 EWSMIKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             EEEECCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             cEEECCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            2  11112211111 2233323 677888887655  68999988753  222221      112223355565523367


Q ss_pred             Eeeec--C-----CeEEEEecccccc---e-eeeeec---ccceeEeEEEEeccCCeEEEeecC--------CcEEEEec
Q 021121          253 ASCSY--D-----MTVCLWDFMVEDA---L-VGRYDH---HTEFAVGVDMSVLVEGLLASTGWD--------ELVYVWQQ  310 (317)
Q Consensus       253 ~~~~~--d-----~~i~vwd~~~~~~---~-~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~~w~~  310 (317)
                      +.|+.  +     +.+.+||+.+..-   . ......   ....-.+++...+ +.+++.||.+        ..+.+||+
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP-RKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET-TEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC-CEEEEECCccCCCCCCCCCeEEEEEC
Confidence            77765  2     4588999887651   0 111111   1111112233332 5677777743        45888887


Q ss_pred             CCC
Q 021121          311 GMD  313 (317)
Q Consensus       311 ~~~  313 (317)
                      .++
T Consensus       634 ~t~  636 (695)
T 2zwa_A          634 LSE  636 (695)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.92  E-value=0.65  Score=39.16  Aligned_cols=105  Identities=9%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCcee--eecc------CccceEEEEecCC---CCcEEEEEec-----
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM--IIPA------HEFEILACDWNKY---DDCLIASASV-----  213 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~v~~i~~~~~---~~~~l~~~~~-----  213 (317)
                      .....|+|.|+ ++++++-...+.|++++..+++...  .+..      .......|+++|.   ++.+.++-+.     
T Consensus        27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            45789999998 7777655444578888865554322  2221      2345779999983   3444444432     


Q ss_pred             -------CCcEEEEEccCCC-------ccEEEEec-CCCceeEEEecCCCCeeEEee
Q 021121          214 -------DKSIKIWDVRNYR-------VPIAVLNG-HGYAVRKVKFSPHRRNLLASC  255 (317)
Q Consensus       214 -------d~~i~v~d~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~  255 (317)
                             ...|..|+.....       ..+..+.. .......|+|.|+|.-++.+|
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   2356666654321       11111221 123468999999998434434

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.91  E-value=0.47  Score=37.49  Aligned_cols=175  Identities=7%  Similarity=-0.032  Sum_probs=87.4

Q ss_pred             EEecCCCCEEEEEcCC-------------CEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEe----CCCeEE
Q 021121          113 DYNPTRRDSFITSSWD-------------DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSAS----GDCTLR  175 (317)
Q Consensus       113 ~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~  175 (317)
                      -+++++..+..+...+             ..|+..++...+... +....    +..|+++ ++.|+-..    ....|+
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~-g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLI-GNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEE-TTEEEEEEESSSSCEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEe-CCEEEEEeecCCCCceEE
Confidence            4578887444444332             468888887665333 32222    2256777 55555444    345666


Q ss_pred             EEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          176 IWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                      ..++.... ...+..+..    .++++ +++.|.-.+ ....|.+.++.....  ..+..  .... ..++|+++.+..+
T Consensus       133 ~~~~dGs~-~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~--~~l~~--~~~~-~~~~P~g~~iy~t  201 (302)
T 3s25_A          133 RIRIDGEE-KKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSE--ALFYD--CNCY-KPVVLDDTNVYYM  201 (302)
T ss_dssp             EEETTSCC-CEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEE--EEEEC--SCEE-EEEEEETTEEEEE
T ss_pred             EEECCCCC-eEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCE--EEEeC--CCcc-ceeeecCCEEEEE
Confidence            66766433 344443332    34566 455555444 356788888766442  22222  1222 3466888854444


Q ss_pred             eecC-CeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee--cCCcEEEEecC
Q 021121          255 CSYD-MTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG--WDELVYVWQQG  311 (317)
Q Consensus       255 ~~~d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~~w~~~  311 (317)
                      -..+ ..|..-++.....  ..+..  ..+  ..|+|. +..|+-+.  ..+.|..=+++
T Consensus       202 ~~~~~~~I~~~~ldG~~~--~~Lt~--~~~--~~~~~~-g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          202 DVNRDNAIVHVNINNPNP--VVLTE--ANI--EHYNVY-GSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             EGGGTTEEEEECSSSCCC--EECSC--SCE--EEEEEE-TTEEEEEECSSSCEEEEEETT
T ss_pred             EcCCCcEEEEEECCCCCe--EEEeC--CCc--ceEEEC-CCEEEEEECCCCcEEEEEECC
Confidence            3333 3566656655442  22222  222  236777 45444332  23444444443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.79  E-value=0.53  Score=37.20  Aligned_cols=176  Identities=10%  Similarity=0.022  Sum_probs=88.2

Q ss_pred             EEecCCCCEEEEEc----CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee
Q 021121          113 DYNPTRRDSFITSS----WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII  188 (317)
Q Consensus       113 ~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (317)
                      .|++++. .|+-..    .+..|...++.... ...+..+..    ..++|++..+..+......|...++..+.....+
T Consensus       110 ~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          110 YASLIGN-YIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EEEEETT-EEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EEEEeCC-EEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence            6777777 555443    45567777776433 344443322    3456774444445444678888888765443333


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecC--CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEee-ecCCeEEEEe
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVD--KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC-SYDMTVCLWD  265 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~vwd  265 (317)
                      .+   ... ..+.| ++..|+-...+  ..|..-++....  ...+..  ..+  ..|+|++..+..+. ...+.|..-+
T Consensus       184 ~~---~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~  252 (302)
T 3s25_A          184 DC---NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVK  252 (302)
T ss_dssp             CS---CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCC--CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred             CC---Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence            32   222 23557 66666655433  356666665543  233332  233  34788888544432 2345666666


Q ss_pred             cccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          266 FMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      +.....  +.+...  .+.  .+++.++.+..+--..+.|..-+++
T Consensus       253 ~DG~~r--~~l~~~--~~~--~i~i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          253 NDGTGF--KELAKG--EFC--NINVTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             TTSCCC--EEEEES--CEE--EEEECSSEEEEEETTTCCEEEEESS
T ss_pred             CCCCcc--EEeeCC--ccc--eEEEeCCEEEEEECCCCeEEEEECC
Confidence            654331  222211  233  3445523344444445555544443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.50  E-value=1.4  Score=39.89  Aligned_cols=269  Identities=9%  Similarity=0.033  Sum_probs=139.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec----CCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD----TADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .|.++...+  ++.+.+++.       . -|..++.....  +.......    ....|.++...+++ ..|..|+.. -
T Consensus       147 ~i~~i~~d~--~g~lWigt~-------~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~~-G  212 (758)
T 3ott_A          147 TIYSIIRTK--DNQIYVGTY-------N-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTEG-Y  212 (758)
T ss_dssp             CEEEEEECT--TCCEEEEET-------T-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEEE-E
T ss_pred             eEEEEEEcC--CCCEEEEeC-------C-CHhhCccCCCc--eEEecCCCccccccceeEEEEEECCC-CEEEEEECC-C
Confidence            455665555  566666653       3 46667655432  21111000    12247888777665 355556644 4


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-------ccccceEEEEE
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-------EHAYCVYNATW  157 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~  157 (317)
                      +..++.... .......+  ....|.++...+++.  |..|+. +-+.+++..+++......       -....|.++..
T Consensus       213 l~~~~~~~~-~~~~~~~l--~~~~i~~i~~d~~g~--lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~  286 (758)
T 3ott_A          213 LFQYFPSTG-QIKQTEAF--HNNSIKSLALDGNGD--LLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA  286 (758)
T ss_dssp             EEEEETTTT-EEEEEEEE--EEEEEEEEEECTTCC--EEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE
T ss_pred             CeEEcCCCC-eEEeccCC--CCCeEEEEEEcCCCC--EEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE
Confidence            777886543 11111111  234578887777765  445554 457888877654322211       11235888877


Q ss_pred             ecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc-cE
Q 021121          158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-PI  229 (317)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~  229 (317)
                      ..+ +. |-.|+..| +.++... . ....+.       .....|.++.-.+ ++.+.+ |+.+| +..++..+... ..
T Consensus       287 D~~-g~-lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt~~G-l~~~~~~~~~~~~~  358 (758)
T 3ott_A          287 DQE-HN-IWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GGANG-LIRFTDPAGERHDA  358 (758)
T ss_dssp             CTT-CC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EETTE-EEEESCTTSSCCCC
T ss_pred             cCC-CC-EEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcC-CCCEEE-eeCCc-ceeeccccccccee
Confidence            765 44 44566666 5444322 1 111111       1234578888776 665544 45554 66676554211 12


Q ss_pred             EEEec-------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec-----ccceeEeEEEEeccCCeEE
Q 021121          230 AVLNG-------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-----HTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       230 ~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~  297 (317)
                      ..+..       ....|.++.-.+++.  |..|+ ++-+..+|..+++........     ....|.++...+  ...|.
T Consensus       359 ~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~--~g~lW  433 (758)
T 3ott_A          359 IWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT--AGQLW  433 (758)
T ss_dssp             EEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT--TSEEE
T ss_pred             EEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC--CCCEE
Confidence            22210       123588888888876  44455 456888998765411111111     123466666554  34566


Q ss_pred             EeecCCcEEEEec
Q 021121          298 STGWDELVYVWQQ  310 (317)
Q Consensus       298 s~~~dg~i~~w~~  310 (317)
                      .|+..+-|..++.
T Consensus       434 igT~~~Gl~~~~~  446 (758)
T 3ott_A          434 ISTCLGGIFVVDK  446 (758)
T ss_dssp             EEESSSCEEEEEH
T ss_pred             EEECCCceEEEcc
Confidence            6666555777764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.85  E-value=2.6  Score=35.55  Aligned_cols=245  Identities=10%  Similarity=0.022  Sum_probs=119.2

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec---------cCCcceEEEEEecC----CCCEEEEEcC-
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH---------EHTREVHSADYNPT----RRDSFITSSW-  127 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~----~~~~l~~~~~-  127 (317)
                      ....|+|.|++...|+++...|.|++++.........+..+.         ........|+|+|+    +. +.++-+. 
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~-lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK-LYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE-EEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE-EEEEEeCC
Confidence            467899999984346666788999999643221112222211         11356788999986    33 3333221 


Q ss_pred             -C----------CEEEEEEcCCC----------ceeEEee--ccccceEEEEEecCCCCeEEEEeCC-------------
Q 021121          128 -D----------DTVKLWTVDRP----------TSVRTFK--EHAYCVYNATWNPRHSDVFCSASGD-------------  171 (317)
Q Consensus       128 -d----------g~v~iwd~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d-------------  171 (317)
                       +          ..|.-|.+..+          +.+..+.  ........|+|.|+ +.+.++.+..             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD-G~LYv~~Gd~~~~~~~~~~~q~~  172 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD-GFLYIILGDGMITLDDMEEMDGL  172 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT-SCEEEEECCTTCCHHHHHHCTTC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC-CcEEEEeCCCCCCCCccccccCc
Confidence             1          24555666421          2222222  12234688999999 6776665543             


Q ss_pred             ----CeEEEEeCCCCC--------------------ceeeeccCccceEEEEecCCCC----c-EEEEEecCC----cEE
Q 021121          172 ----CTLRIWDVREMG--------------------STMIIPAHEFEILACDWNKYDD----C-LIASASVDK----SIK  218 (317)
Q Consensus       172 ----g~i~i~d~~~~~--------------------~~~~~~~~~~~v~~i~~~~~~~----~-~l~~~~~d~----~i~  218 (317)
                          |+|.-.|.....                    ...--.+|.. ...++|+|.++    . .+..+...|    .-.
T Consensus       173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                334444544310                    0011123333 35788998433    3 333332112    122


Q ss_pred             EEEccCCC-----ccEEEEecCC-CceeEEEecCCCC-----eeEEeeecCCeEEEEecccccce--eeee---------
Q 021121          219 IWDVRNYR-----VPIAVLNGHG-YAVRKVKFSPHRR-----NLLASCSYDMTVCLWDFMVEDAL--VGRY---------  276 (317)
Q Consensus       219 v~d~~~~~-----~~~~~~~~~~-~~v~~~~~~~~~~-----~~l~~~~~d~~i~vwd~~~~~~~--~~~~---------  276 (317)
                      |..+..+.     .++..+..|. ..+..+.|-....     .-++.+...+.|....+......  ...+         
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            33332221     3444444331 4677787753211     01344555566655554433211  1111         


Q ss_pred             ecccceeEeEEEEeccCCeEEEee-------cCCcEEEEecCC
Q 021121          277 DHHTEFAVGVDMSVLVEGLLASTG-------WDELVYVWQQGM  312 (317)
Q Consensus       277 ~~~~~~v~~~~~~~~~~~~l~s~~-------~dg~i~~w~~~~  312 (317)
                      ......+.++...|+ +.++++..       .+|  +||++..
T Consensus       332 ~~~~~r~~~v~~~pd-G~Lyv~~~~~~~~~~~~G--~I~Ri~~  371 (463)
T 2wg3_C          332 GYFSGHILGFGEDEL-GEVYILSSSKSMTQTHNG--KLYKIVD  371 (463)
T ss_dssp             SCCCSEEEEEEECTT-CCEEEEEESSCGGGCSSE--EEEEEEC
T ss_pred             ccccCcceEEEECCC-CCEEEEeccCCcccCCCC--cEEEecC
Confidence            112357899999998 66655554       234  5777763

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.82  E-value=2.7  Score=35.51  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=58.2

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCC--Ccceeee-eec------CCCCeeEEEecCC---CCCe
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAA--PALTELV-AFD------TADGVYDLAWSES---HDSL   75 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~--~~~~~~~-~~~------~~~~v~~~~~~~~---~~~~   75 (317)
                      .....|+|.|+..++++++..       .|.|++++.+...  ..+..+. .+.      .......|+|+|+   ...+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er-------~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~l   86 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEK-------EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKL   86 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEET-------TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEE
T ss_pred             CCceEEEECCCCCeEEEEEeC-------CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEE
Confidence            456789999953346887765       7899999754321  1111111 011      1457899999996   2123


Q ss_pred             EEEEEcC------------CeEEEEEeCCCC--C-----CCCceeec--cCCcceEEEEEecCCCCEEEEEc
Q 021121           76 LIAAVAD------------GSVKIYDTALPP--T-----ANPIRSLH--EHTREVHSADYNPTRRDSFITSS  126 (317)
Q Consensus        76 l~~~~~d------------g~i~v~~~~~~~--~-----~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~  126 (317)
                      .++-+.+            ..|.-|.+....  .     .+.+..+.  ........|.|.|||. ++++.+
T Consensus        87 Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G  157 (463)
T 2wg3_C           87 YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG  157 (463)
T ss_dssp             EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred             EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence            3332221            134446654321  0     11111111  1123457899999997 555443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.79  E-value=1.9  Score=33.65  Aligned_cols=223  Identities=15%  Similarity=0.054  Sum_probs=119.4

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT  140 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  140 (317)
                      ..|..++-...  ..++. . ||.|..|-.....+...   -......|..++.....  .++. . ||.|..|-.....
T Consensus        24 ~~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~G   92 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDG   92 (282)
T ss_dssp             SSCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTS
T ss_pred             CCCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCC
Confidence            35777776543  23444 4 89999998654322111   11123456666665332  3333 4 8999999765432


Q ss_pred             eeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEE
Q 021121          141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIW  220 (317)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~  220 (317)
                      .+..-..-...|..++....   ..+.-. +|.|+.|-......+-........|..++... . ..++. . ||.++.|
T Consensus        93 qlg~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~-~-~~~~l-~-~G~v~~w  164 (282)
T 3qhy_B           93 QTTVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV-Y-TALAV-K-NGGVIAW  164 (282)
T ss_dssp             TTCCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS-S-EEEEE-E-TTEEEEE
T ss_pred             CCCCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc-C-EEEEE-E-CCEEEEe
Confidence            22111112346778877643   334445 99999998765433222222334577776553 2 23333 3 7999999


Q ss_pred             EccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee
Q 021121          221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG  300 (317)
Q Consensus       221 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  300 (317)
                      -.....+. .........|..++.-...  .++.  .||.+..|-......+- ........|..++...  ...++. .
T Consensus       165 G~n~~gql-g~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~--~h~~al-~  235 (282)
T 3qhy_B          165 GDNYFGQT-TVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGE--WYSLAL-K  235 (282)
T ss_dssp             ECCTTSTT-SCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECS--SCEEEE-E
T ss_pred             cCCCCCCC-CCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCC--CEEEEE-E
Confidence            76653321 1111113457777665433  3443  59999999765433221 1111123466666543  233333 3


Q ss_pred             cCCcEEEEecCC
Q 021121          301 WDELVYVWQQGM  312 (317)
Q Consensus       301 ~dg~i~~w~~~~  312 (317)
                       ||.|+.|=.+.
T Consensus       236 -~g~v~~wG~n~  246 (282)
T 3qhy_B          236 -NGKVIAWGSSR  246 (282)
T ss_dssp             -TTEEEEESTTC
T ss_pred             -CCEEEEecCCC
Confidence             99999997654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.51  E-value=3  Score=32.46  Aligned_cols=223  Identities=14%  Similarity=0.059  Sum_probs=120.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      +|.|+.|-.+.....-.+.   .....|..++-...  ..++. . ||.|..|-.....+....   ..-...|..++..
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~---~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G  110 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPA---ATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAG  110 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCG---GGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEE
T ss_pred             CCEEEEEeCCCCCCCCCCc---cCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCC---cccCCCeEEEECc
Confidence            7899999877654211111   12335777776644  34444 4 899999986543221111   1113467777776


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI  195 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  195 (317)
                      ..   ..+.-. ||.|+.|-......+..-......|..++....   ..+.-. ||.|+.|-......+..-......|
T Consensus       111 ~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~---~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v  182 (282)
T 3qhy_B          111 AW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY---TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGV  182 (282)
T ss_dssp             TT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSE
T ss_pred             CC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC---EEEEEE-CCEEEEecCCCCCCCCCceecCCCe
Confidence            43   344445 899999976543222211123345777766533   222334 7999999866543332211223457


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      ..++...  ...++.  .||.++.|-.....+.- .-......|..++-....  .++. . ||.+..|-.....++ ..
T Consensus       183 ~~i~~G~--~hs~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h--~~al-~-~g~v~~wG~n~~gq~-~v  252 (282)
T 3qhy_B          183 DDVAGGI--FHSLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWY--SLAL-K-NGKVIAWGSSRTAPS-SV  252 (282)
T ss_dssp             EEEEECS--SEEEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSC--EEEE-E-TTEEEEESTTCCCCG-GG
T ss_pred             EEEEecC--CEEEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCE--EEEE-E-CCEEEEecCCCCccc-cC
Confidence            7777653  334444  59999999765543211 111112356677665433  2333 3 999999976554322 11


Q ss_pred             eecccceeEeEEEEe
Q 021121          276 YDHHTEFAVGVDMSV  290 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~  290 (317)
                          ...|..++...
T Consensus       253 ----~~~v~~iaaG~  263 (282)
T 3qhy_B          253 ----QSGVSSIEAGP  263 (282)
T ss_dssp             ----SSCEEEEEECS
T ss_pred             ----CCCcEEEEECc
Confidence                23466666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.20  E-value=5.3  Score=34.53  Aligned_cols=73  Identities=11%  Similarity=0.029  Sum_probs=53.2

Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccccc------------eeeeeecccceeEeEEEEeccCCeEEEeecCCcE
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA------------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV  305 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  305 (317)
                      ....+..+|+|++++++|-.+.++.++|++.-..            +....+ -.......+|.++ +....|---|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~-G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGR-GNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSS-SEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCC-CceEeeeeecceE
Confidence            3467899999998888888999999999885321            122222 2334667899997 5556666689999


Q ss_pred             EEEecCC
Q 021121          306 YVWQQGM  312 (317)
Q Consensus       306 ~~w~~~~  312 (317)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.75  E-value=6  Score=34.21  Aligned_cols=73  Identities=5%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC------Cc-------eeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREM------GS-------TMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~-------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      .....+..+|++..+++.+-.+.++.++|++..      +.       ....+ ........+|.+ +++...+---|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence            446778899994445555566889999999842      11       11112 234567899999 8877777778999


Q ss_pred             EEEEEccC
Q 021121          217 IKIWDVRN  224 (317)
Q Consensus       217 i~v~d~~~  224 (317)
                      |.-|++..
T Consensus       401 vvkWni~~  408 (638)
T 3sbq_A          401 VVKWNMEE  408 (638)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeccH
Confidence            99999975

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=82.65  E-value=18  Score=29.48  Aligned_cols=263  Identities=12%  Similarity=0.130  Sum_probs=128.6

Q ss_pred             CceEEEEecCCCCCc-------ceeeeeec--CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCC-----CCc--
Q 021121           36 NGRVHVLDLSPAAPA-------LTELVAFD--TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTA-----NPI--   99 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~-------~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~-----~~~--   99 (317)
                      +|+|+.|=.+.....       ........  ....+..++-.   ....++-..+|.|..|-.....+.     ...  
T Consensus        19 ~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~   95 (389)
T 3kci_A           19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVST   95 (389)
T ss_dssp             --CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEE
T ss_pred             CCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccC
Confidence            888999977654310       00000000  11234444432   245556677899999965432110     000  


Q ss_pred             -eeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc-----------eeEEeecc-ccceEEEEEecCCCCeE
Q 021121          100 -RSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-----------SVRTFKEH-AYCVYNATWNPRHSDVF  165 (317)
Q Consensus       100 -~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~-~~~v~~~~~~~~~~~~l  165 (317)
                       ..+. .....+..++.+.... ..+.-..||.|+.|-....-           ....+... ...|..++..   ....
T Consensus        96 p~~v~~~~~~~~~~v~i~~G~~-h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs  171 (389)
T 3kci_A           96 PTLLESIQHVFIKKVAVNSGGK-HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHS  171 (389)
T ss_dssp             EEECGGGTTSCEEEEEECTTCS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEE
T ss_pred             CEEcccccCCceeEEEECcCCC-eEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeE
Confidence             0111 1122344455554444 66667789999999653210           01111111 1256666654   4455


Q ss_pred             EEEeCCCeEEEEeCCCCCc-----------eeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc------
Q 021121          166 CSASGDCTLRIWDVREMGS-----------TMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV------  227 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~-----------~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------  227 (317)
                      +.-..+|.|+.|-......           ...+. .....+..++... .....+.-..+|.|+.|-.....+      
T Consensus       172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~  250 (389)
T 3kci_A          172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGS  250 (389)
T ss_dssp             EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred             EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence            6677899999997543111           11111 1123466666543 234555567889999996543111      


Q ss_pred             ----cEEEEec-CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce----------eeeeec-ccceeEeEEEEec
Q 021121          228 ----PIAVLNG-HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL----------VGRYDH-HTEFAVGVDMSVL  291 (317)
Q Consensus       228 ----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~----------~~~~~~-~~~~v~~~~~~~~  291 (317)
                          ....+.. ....|..++.-..   ..++-..+|.|..|-......+          ...... ....|..++..  
T Consensus       251 ~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--  325 (389)
T 3kci_A          251 DGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--  325 (389)
T ss_dssp             CCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--
T ss_pred             CCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--
Confidence                0111111 1224555555432   3444467899999965432110          011111 12345555543  


Q ss_pred             cCCeEEEeecCCcEEEEecCC
Q 021121          292 VEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~~  312 (317)
                       ....+....||.|+.|=.+.
T Consensus       326 -~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          326 -SLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             -SSEEEEEETTCCEEEEECCT
T ss_pred             -cCeEEEECCCCCEEEeeCCC
Confidence             44555567899999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-18
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (230), Expect = 2e-22
 Identities = 63/309 (20%), Positives = 106/309 (34%), Gaps = 69/309 (22%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR- 119
             V  + +     S++++A  D ++K++D     T +  R+L  HT  V    ++ + + 
Sbjct: 18  SPVTRVIFH-PVFSVMVSASEDATIKVWDY---ETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 120 ----------------------------------------DSFITSSWDDTVKLWTVDRP 139
                                                   D  +++S D T+K+W V   
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACD 199
             V+TF  H   V     N     +  S S D T+R+W V        +  H   +    
Sbjct: 134 YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 200 WNKYDDC-------------------LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
           W                          + S S DK+IK+WDV      +  L GH   VR
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVR 251

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
            V F    +  + SC+ D T+ +WD       +   + H  F   +D        + +  
Sbjct: 252 GVLFHSGGK-FILSCADDKTLRVWD-YKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGS 308

Query: 301 WDELVYVWQ 309
            D+ V VW+
Sbjct: 309 VDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (187), Expect = 1e-16
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 24/184 (13%)

Query: 57  FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP 116
           F        +       +L+ +   D +V+++  A   T      L EH   V    + P
Sbjct: 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA---TKECKAELREHRHVVECISWAP 195

Query: 117 TRRDSFI-------------------TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW 157
               S I                   + S D T+K+W V     + T   H   V    +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
           +        S + D TLR+WD +       + AHE  + + D++K     + + SVD+++
Sbjct: 256 HS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTV 313

Query: 218 KIWD 221
           K+W+
Sbjct: 314 KVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (183), Expect = 4e-16
 Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 65/275 (23%)

Query: 94  PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153
           P      +L  H   V    ++P      +++S D T+K+W  +     RT K H   V 
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 154 NATWNPRH-----------------------------------------SDVFCSASGDC 172
           + +++                                             D   SAS D 
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232
           T+++W+V+          H   +     N+ D  LIAS S D+++++W V       A L
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE-CKAEL 181

Query: 233 NGHGYAVRKVKF-------------------SPHRRNLLASCSYDMTVCLWDFMVEDALV 273
             H + V  + +                   S      L S S D T+ +WD +     +
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD-VSTGMCL 240

Query: 274 GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
                H  +  GV         + S   D+ + VW
Sbjct: 241 MTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVW 274

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (220), Expect = 6e-21
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
           F++ + D + KLW V      +TF  H   +    + P + + F + S D T R++D+R 
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257

Query: 182 MGSTMIIPAHEFE--ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV 239
               M          I +  ++K    L+ +   D +  +WD         VL GH   V
Sbjct: 258 DQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRV 315

Query: 240 RKVKFSPHRRNLLASCSYDMTVCLWD 265
             +  +      +A+ S+D  + +W+
Sbjct: 316 SCLGVTDDGM-AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 9e-16
 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 62  GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
            V   A++ S + +                L      +R   E               D+
Sbjct: 99  WVMTCAYAPSGNYVACG---GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
            I +S  DT             T          +      + +F S + D + ++WDVRE
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-AVR 240
                    HE +I A  +   +    A+ S D + +++D+R  +  +   + +    + 
Sbjct: 216 GMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG 300
            V FS   R LL +   D    +WD  ++    G    H      + ++      +A+  
Sbjct: 275 SVSFSKSGR-LLLAGYDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGS 331

Query: 301 WDELVYVW 308
           WD  + +W
Sbjct: 332 WDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 45/256 (17%), Positives = 76/256 (29%), Gaps = 48/256 (18%)

Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
              R+L  H  ++++  +    R   +++S D  + +W       V      +  V    
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 157 WNPRHSDVFCSASG--------------------------------------------DC 172
           + P  + V C                                                D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232
           T  +WD+     T     H  +++       D  L  S + D S K+WDVR         
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTF 222

Query: 233 NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV 292
            GH   +  + F P+  N  A+ S D T  L+D   +  L+     +    +        
Sbjct: 223 TGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 293 EGLLASTGWDELVYVW 308
             LL +   D    VW
Sbjct: 282 GRLLLAGYDDFNCNVW 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 3e-18
 Identities = 39/210 (18%), Positives = 87/210 (41%), Gaps = 18/210 (8%)

Query: 68  WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW 127
             +     +++   D  VK++D   P T   + +L  HT  V+S  ++       ++ S 
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIH---VVSGSL 195

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
           D ++++W V+    + T   H              ++  S + D T++IWD++       
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQT 252

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN----YRVPIAVLNGHGYAVRKVK 243
           +        A    +++   + ++S D ++K+WD++       +      G G  V +++
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312

Query: 244 FSPHRRNLLASCSYDMT----VCLWDFMVE 269
            S  +  + A  S + T    + + DF V+
Sbjct: 313 ASNTKL-VCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 73  DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK 132
            + +++   D ++K++      T   +R+L  HT  V S+        S  T        
Sbjct: 27  GNRIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT----- 78

Query: 133 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE 192
              V    +                   H     S S D TLR+WD+       ++  H 
Sbjct: 79  -LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLL 252
               A    +YD   + S + D  +K+WD       +  L GH   V  ++F       +
Sbjct: 138 A---AVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQFDGIH---V 190

Query: 253 ASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
            S S D ++ +WD    +  +     H     G+++    + +L S   D  V +W
Sbjct: 191 VSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 26/180 (14%), Positives = 42/180 (23%), Gaps = 15/180 (8%)

Query: 134 WTVDRPTSVRTFKEHAYCVYNA-TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE 192
           W      S +  K H   V     +         S S D TL++W          +  H 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 193 FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLL 252
             + +                  S               ++        V+        +
Sbjct: 58  GGVWSSQMRDNIII-------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110

Query: 253 ASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
            S S D T+ +WD                    V         + S  +D +V VW    
Sbjct: 111 VSGSRDATLRVWDIETGQ----CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 1e-17
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 83  GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV 142
            S+ ++D A P      R L  H   V+  D++     S    S D T+K+W       V
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA---SGDRTIKVWNTSTCEFV 171

Query: 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202
           RT   H   +    +  R      S S D T+R+WD+       ++  HE         +
Sbjct: 172 RTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDIECGACLRVLEGHEEL---VRCIR 225

Query: 203 YDDCLIASASVDKSIKIWDVRNYRVP--------IAVLNGHGYAVRKVKFSPHRRNLLAS 254
           +D+  I S + D  IK+WD+     P        +  L  H   V +++F   +   + S
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVS 282

Query: 255 CSYDMTVCLWD 265
            S+D T+ +WD
Sbjct: 283 SSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 8e-16
 Identities = 51/296 (17%), Positives = 95/296 (32%), Gaps = 61/296 (20%)

Query: 58  DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
           +T+ GVY L +    D  +++ + D ++KI+D     T    R L  HT  V    Y+  
Sbjct: 13  ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTGSVLCLQYDER 66

Query: 118 RRDSFITSSWDD-------------------------------------TVKLWTVDRPT 140
              +  + S                                        ++ +W +  PT
Sbjct: 67  VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126

Query: 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW 200
            +   +                    SASGD T+++W+         +  H+  I     
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI---AC 183

Query: 201 NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMT 260
            +Y D L+ S S D +I++WD+         L         V+        + S +YD  
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 261 VCLWDF--------MVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           + +WD               +     H+     +      E  + S+  D+ + +W
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 48/247 (19%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN 158
           I    E ++ V+   Y+  +    ++   D+T+K+W  +     R    H   V    ++
Sbjct: 8   IHCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 159 PRHSDVFCSASGDC-------------------------------------TLRIWDVRE 181
            R      S S                                        ++ +WD+  
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
                +         A +   +DD  I SAS D++IK+W+       +  LNGH   +  
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIAC 183

Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW 301
           +++      L+ S S D T+ LWD      L     H          +      + S  +
Sbjct: 184 LQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK----RIVSGAY 236

Query: 302 DELVYVW 308
           D  + VW
Sbjct: 237 DGKIKVW 243

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 4e-11
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 21/149 (14%)

Query: 82  DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS 141
           D ++K+++T+   T   +R+L+ H R +    Y        ++ S D+T++LW ++    
Sbjct: 157 DRTIKVWNTS---TCEFVRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDIECGAC 210

Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---------IIPAHE 192
           +R  + H   V    ++ +      S + D  +++WD+                 +  H 
Sbjct: 211 LRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 193 FEILACDWNKYDDCLIASASVDKSIKIWD 221
             +    +   D+  I S+S D +I IWD
Sbjct: 268 GRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 3e-15
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 27/188 (14%)

Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-------HAYCVYNA 155
                 V +   +P         S D  V++W  +    V            H   VY+ 
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260

Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGST------------MIIPAHEFEILACDWNKY 203
            +         S S D ++++W+++   +             +    H+  +L+    + 
Sbjct: 261 VFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ- 318

Query: 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR-----NLLASCSYD 258
           +D  I S S D+ +  WD ++   P+ +L GH  +V  V  +         N+ A+ S D
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 259 MTVCLWDF 266
               +W +
Sbjct: 378 CKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (177), Expect = 5e-15
 Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 21/183 (11%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTA----LPPTANPIRSLHEHTREVHSADYNP 116
           DGV  +A S      + A   D +V+++D+     +    +   S   H   V+S  +  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264

Query: 117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC---------- 166
             + S ++ S D +VKLW +    +    K         T+      V            
Sbjct: 265 DGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323

Query: 167 -SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-----DDCLIASASVDKSIKIW 220
            S S D  +  WD +     +++  H   +++           +  + A+ S D   +IW
Sbjct: 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

Query: 221 DVR 223
             +
Sbjct: 384 KYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 54/329 (16%), Positives = 102/329 (31%), Gaps = 40/329 (12%)

Query: 11  YSVKFSPFYESRLAVA---TAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG----V 63
             VKFS      LA     T Q + +     V  L    AA    E +   ++      +
Sbjct: 66  CCVKFSND-GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 64  YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFI 123
             + +S          +A G+              I  + +   +   +       D  +
Sbjct: 125 RSVCFSPDGKF-----LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 124 TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183
           + S D TV++W +       T             +P       + S D  +R+WD     
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV-AVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 184 STMIIP-------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-------- 228
               +         H+  + +  + + D   + S S+D+S+K+W+++N            
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297

Query: 229 ---IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG 285
                   GH   V  V  + +    + S S D  V  WD       +     H    + 
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWD-KKSGNPLLMLQGHRNSVIS 355

Query: 286 VDMSVLV-----EGLLASTGWDELVYVWQ 309
           V ++          + A+   D    +W+
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 9e-11
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTA---------LPPTANPIRSLHEHTREVHS 111
           D VY + ++      +++   D SVK+++            P +     +   H   V S
Sbjct: 255 DSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 112 ADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS-----DVFC 166
                      ++ S D  V  W       +   + H   V +       S     +VF 
Sbjct: 314 VATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 167 SASGDCTLRIWDVREM 182
           + SGDC  RIW  +++
Sbjct: 373 TGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (128), Expect = 7e-09
 Identities = 37/321 (11%), Positives = 83/321 (25%), Gaps = 78/321 (24%)

Query: 63  VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN-PIRSLHEHTREVHSADYNPTRRDS 121
            + L          +    +    +Y+ ALP   +  +    +HT  V    ++      
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND--GE 75

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR---------------HSDVFC 166
           ++ +  + T +++ V   + V    + +    +                       D   
Sbjct: 76  YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135

Query: 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-------------------- 206
            A+G     I         +++     E      + +                       
Sbjct: 136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 195

Query: 207 -----------------------LIASASVDKSIKIWDVRN------YRVPIAVLNGHGY 237
                                   IA+ S+D+++++WD                  GH  
Sbjct: 196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 255

Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV----- 292
           +V  V F+   +  + S S D +V LW+    +        ++       +         
Sbjct: 256 SVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 293 -----EGLLASTGWDELVYVW 308
                +  + S   D  V  W
Sbjct: 315 ATTQNDEYILSGSKDRGVLFW 335

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (151), Expect = 6e-12
 Identities = 38/258 (14%), Positives = 79/258 (30%), Gaps = 5/258 (1%)

Query: 12  SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWS-E 70
           +VKFSP   S+  + +    G +          S +     +      A  + D++W  E
Sbjct: 68  TVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT 130
                ++    D            +   +    +     H     P R  +         
Sbjct: 127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA 190
            +        S RT  +    V +  ++P   +   +   D  +  +D +       I  
Sbjct: 187 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 246

Query: 191 HEFEILACDWN--KYDDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPH 247
            +  +    +     D    A+   D +I++WDV   + V    L+      ++V     
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 248 RRNLLASCSYDMTVCLWD 265
               + S S D T+  ++
Sbjct: 307 GNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 7e-08
 Identities = 31/310 (10%), Positives = 86/310 (27%), Gaps = 21/310 (6%)

Query: 12  SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSES 71
            + + P   + +A    ++        V  LD   +            +  V  + +S  
Sbjct: 22  HLSYDPT-TNAIAYPCGKS------AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 74

Query: 72  HDSLLIA-AVADGSVKIYDTALPPTANPIRSLHE-----HTREVHSADYNPT-RRDSFIT 124
             S  +      G V ++       +N +    +         +    ++   RR   + 
Sbjct: 75  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134

Query: 125 SSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS 184
              D+     + D   S+     H+  +              +   D ++  +       
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194

Query: 185 TMIIP---AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
           +            +   +++      + +   D+ I  +D ++      + +        
Sbjct: 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254

Query: 242 VKFSPHRR-NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLV--EGLLAS 298
           +           A+   D T+ +WD +     V ++    +      + V+    G + S
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWD-VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313

Query: 299 TGWDELVYVW 308
              D  +  +
Sbjct: 314 LSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162
           H+    V   +++P   +  IT   D  +  +       ++  ++    V    +     
Sbjct: 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261

Query: 163 D--VFCSASGDCTLRIWDVR--EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIK 218
           D   F +   D T+R+WDV   +      +   +            +  I S S+D ++ 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 219 IWDV 222
            +++
Sbjct: 322 FYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 38/300 (12%), Positives = 90/300 (30%), Gaps = 18/300 (6%)

Query: 18  FYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-------AFDTADGVYDLAWSE 70
           +++  +    A +F +  +G++  +   P A     +          +  + V  +  S 
Sbjct: 2   YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS- 60

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSL--HEHTREVHSADYNPTRRDSFITSSWD 128
            + +  +     G VK++D + P   +P+  L        + S    P    + I     
Sbjct: 61  -NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEA 118

Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
            T+ +W +  PT     +  +                C +               + +  
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178

Query: 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR 248
                +  +C     D   + +  +D +++ WD+R  R      +     +  + + P  
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTG 236

Query: 249 RNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
                      +  +    V      +   H    + +  +        STG D L+  W
Sbjct: 237 EW---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 4e-09
 Identities = 13/163 (7%), Positives = 42/163 (25%), Gaps = 6/163 (3%)

Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162
                   ++  + +   + + +   D        R        +    +++  + P   
Sbjct: 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE 237

Query: 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
             + +   + +              +  HE  +L+  +         S   D  +  W  
Sbjct: 238 --WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294

Query: 223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                     +    +V     S   +  + + S D    +++
Sbjct: 295 PYGAS--IFQSKESSSVLSCDISVDDK-YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL 207
           H  CV +  +       F S   D  L  W     G+++        +L+CD +  DD  
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISV-DDKY 320

Query: 208 IASASVDKSIKIWDV 222
           I + S DK   +++V
Sbjct: 321 IVTGSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.3 bits (144), Expect = 7e-11
 Identities = 44/269 (16%), Positives = 84/269 (31%), Gaps = 28/269 (10%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           + +   AW++   + +     +  V IY+ +       +  L EH  +V   D+ P    
Sbjct: 8   EPISCHAWNKD-RTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSN- 64

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYC-VYNATWNPRHSDVFCSASGDCTLRIWDV 179
             +T   D    +WT+   T   T                 +   F   SG   + I   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 180 REMGSTMIIPAHEFEILA---CDWNKYDDCLIASASVDKSIKIWDVRNYRV--------- 227
            +     +    +  I +         +  L+A+ S D   +I+      V         
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 228 --------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
                    +   +     V  V F     + +A  S+D TVCL D   + A+       
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCF-SANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVW 308
                 + ++ + E  L + G D    ++
Sbjct: 244 LPL---LAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 9/173 (5%)

Query: 97  NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
             +         VH   ++         S    TV L   D+  +V T       +   T
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMAVATLASETLPLLAVT 250

Query: 157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
           +    S    +A  DC   ++        +       ++      +         ++DK 
Sbjct: 251 FITESS--LVAAGHDCFPVLFTYDSAAGKLSFGGR-LDVPKQSSQRGLTARERFQNLDKK 307

Query: 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSP---HRRNLLASCSYDMTVCLWDF 266
                  +      + + H  +V ++        + +   +   D  + +WD 
Sbjct: 308 ASSEG--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 5/114 (4%)

Query: 114 YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173
                  S + +  D    L+T D      +F          +     +      + D  
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP-KQSSQRGLTARERFQNLDKK 307

Query: 174 LRIWDVREMGSTMIIPAHEFEILA---CDWNKYDDCLIASASVDKSIKIWDVRN 224
                        +   H+  +         K       +  +D  + IWDVR+
Sbjct: 308 ASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 4/120 (3%)

Query: 68  WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW 127
            +   +S L+AA  D    ++      +A    S          +            +  
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTY---DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305

Query: 128 DDTVKLWTVDRPTSVRTFKEHA-YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186
                  +      + +  +++   +   +        FC+   D  + IWDVR + S +
Sbjct: 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 365

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-ALVGRYDHHTEFAVGVDMSVLVEGLL 296
            +    ++  R   +A C  +  V +++        V     H     GVD +      +
Sbjct: 9   PISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRI 66

Query: 297 ASTGWDELVYVWQQGM 312
            + G D   YVW    
Sbjct: 67  VTCGTDRNAYVWTLKG 82

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (141), Expect = 1e-10
 Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 2/167 (1%)

Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160
                  + + A          +    D  V         +  ++   +           
Sbjct: 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 182

Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIW 220
              +         ++        S +   + +      +  + ++ L+A+ S+D +I I+
Sbjct: 183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 242

Query: 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267
            V+     I  LN H   V  + +       L S   D  +  W+ +
Sbjct: 243 SVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 6e-05
 Identities = 26/278 (9%), Positives = 70/278 (25%), Gaps = 37/278 (13%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYD--TALPPTANPIRSL---------------- 102
            G+  L  +      LI+   DG +  +   +     +N I SL                
Sbjct: 14  KGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT 68

Query: 103 ------HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
                  +H         +          + DD + +        +++ + ++     + 
Sbjct: 69  LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 128

Query: 157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
                +      +     ++ D+            +   ++   ++              
Sbjct: 129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 188

Query: 217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR------RNLLASCSYDMTVCLWDFMVED 270
             +          A       A+                +L+A+ S D  + ++      
Sbjct: 189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248

Query: 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
            ++   + H +    +         L S+G D  +  W
Sbjct: 249 KIIKALNAHKDGVNNLLWE--TPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
            +  ++GH   +  +  +P     L S SYD  +  W 
Sbjct: 5   VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWS 37

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 11/81 (13%)

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246
            I  H   I A   N      + S S D  I  W   +      +   H   +  +  S 
Sbjct: 8   TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSK 56

Query: 247 HRRNLLASCSYDMTVCLWDFM 267
            +     S    + V      
Sbjct: 57  AQEYSSISWDDTLKVNGITKH 77

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 3/133 (2%)

Query: 134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF 193
            T+           +    + A             S      I        +     H  
Sbjct: 223 TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 282

Query: 194 EILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA 253
            + A       D ++ S S +    I+++R+ ++  A +      +  V F    + L+A
Sbjct: 283 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVA 339

Query: 254 SCSYDMTVCLWDF 266
           +   D    L   
Sbjct: 340 AVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 18/180 (10%), Positives = 49/180 (27%), Gaps = 5/180 (2%)

Query: 101 SLHEHTREVHSA-DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
           +L  H   V +   +        IT + D  ++++       +     H   V+   +  
Sbjct: 7   TLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
               +   ++          +   + +    +            +   I + S D ++ +
Sbjct: 64  -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
           W +            H Y +       +   +     +  +V          + G YD+ 
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 20/197 (10%), Positives = 48/197 (24%), Gaps = 4/197 (2%)

Query: 71  SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT 130
             D+ +I    D  +++YD+        +  L  H   V +  Y          S+    
Sbjct: 21  FEDNYVITGADDKMIRVYDSI---NKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTV 76

Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA 190
                     +      ++          ++     + S D TL +W + +  S      
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 136

Query: 191 HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN 250
                L     + +   +       +       +  + ++    +   V  V        
Sbjct: 137 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196

Query: 251 LLASCSYDMTVCLWDFM 267
           L        +       
Sbjct: 197 LSGHTDRIYSTIYDHER 213

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 13/241 (5%)

Query: 68  WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW 127
           W    +S +     +    +           +  L  H   V +   +       ++ S+
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI---VVSGSY 179

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
           D+T+ +W V +   +     H   +Y+  ++        + S D T+RIWD+        
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENGELMYT 238

Query: 188 IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
           +  H   +     +              +       +        + H   +  +     
Sbjct: 239 LQGHTALVGLLRLSDKFLV------SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292

Query: 248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV 307
             N+L S S +    +++      +        +    V+     + L+A+   D   ++
Sbjct: 293 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFL 349

Query: 308 W 308
            
Sbjct: 350 E 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 120 DSFITSSWDDTVKLWTVDRPTSVR-TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD 178
           D+ + S  ++   ++ +     V     + A  +++  +  +         G   L I D
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 6/78 (7%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRR 119
             +  +         ++ + ++    IY+     +   + + + +   ++ S ++     
Sbjct: 282 TNLSAITTF-YVSDNILVSGSENQFNIYNLR---SGKLVHANILKDADQIWSVNFKGKTL 337

Query: 120 DSFITSSWDDTVKLWTVD 137
                   D    L  +D
Sbjct: 338 --VAAVEKDGQSFLEILD 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 25/213 (11%), Positives = 58/213 (27%), Gaps = 8/213 (3%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
           D + D+       SLL+    DGS+ +Y   +      +     +   +   ++      
Sbjct: 12  DYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
                +    +    +    S +    +   +          D   +AS D  + + D R
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 181 EMGSTMIIPA-----HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
             G  +I        +            +   +     +  ++ + +         +   
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190

Query: 236 GYAVRKVK--FSPHRRNLLASCSYDMTVCLWDF 266
           G   +       P  +   A  S D  V +  F
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 21/183 (11%), Positives = 57/183 (31%), Gaps = 19/183 (10%)

Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162
            +   ++ + D N +R    + +S     +L   +            Y + +    P+  
Sbjct: 147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206

Query: 163 DVFCSASGDCTLRIWDVREMGSTMII---------------PAHEFEILACDWNKYDDCL 207
           + +  +S D  + +    + G                        + + + +++      
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKF 265

Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267
           + +A  D  I  W+++  +        +  +V  VK +     L  + S D T      +
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNILCLATSDD-TFKTNAAI 322

Query: 268 VED 270
            + 
Sbjct: 323 DQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 18/170 (10%)

Query: 68  WSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW 127
             +++ S LI  + +  V+ +   L    N          ++      P  ++ +  SS 
Sbjct: 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214

Query: 128 DDTVKLWTVDRPTSVRTFK---------------EHAYCVYNATWNPRHSDVFCSASGDC 172
           D  V +   D                          AY V +  ++PRH     +A  D 
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDG 273

Query: 173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
            +  W++ +    +   A   E          D ++  A+ D + K    
Sbjct: 274 IISCWNL-QTRKKIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
           + +       +  +K  P  ++LL   S+D ++ ++ F
Sbjct: 4   VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKF 40

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 65  DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIR---SLHEHTREVHSADYNPTRRDS 121
           +     S D  +     D     Y+++        R           V+S +++P  +  
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-F 265

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
             T+  D  +  W +     ++ F +               ++ C A+ D T +    
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIAC-SDNILCLATSDDTFKTNAA 321

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 30/215 (13%), Positives = 69/215 (32%), Gaps = 47/215 (21%)

Query: 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR------EMGSTMIIPAHEF 193
            +    K H   +++ +          S SGD  L++WD +          +     H+ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 194 EIL------ACDWNKYDDCLIASASVDKSIKIWDVRN---------YRVPIAVLNGHGYA 238
            +       A + + ++ CL+A+ S    +  + +            ++ +   +   ++
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 239 VRKVKFSPH----RRNLLASCSYDMTVCLWDFMVE-----------------DALVGRYD 277
              +K+         + L +     T  +W F                       V    
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 278 HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
             ++FA  VD+S    GL+A+   +  V + +   
Sbjct: 182 TPSQFATSVDISE--RGLIATGFNNGTVQISELST 214

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 25/219 (11%), Positives = 54/219 (24%), Gaps = 48/219 (21%)

Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK------------EHAYCV 152
           H  ++ S           ++ S D  +K+W      +                  H   +
Sbjct: 13  HDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYD-------- 204
                +     +  + S    L  + +     T  +   + ++L  D  K+         
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 205 ------DCLIASASVDKSIKIWDV-----------------RNYRVPIAVLNGHGYAVRK 241
                    + +  V  +  IW                      +  +            
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 280
           V  S   R L+A+   + TV + +      L      H+
Sbjct: 190 VDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHS 226

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 14/128 (10%)

Query: 93  PPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV 152
             ++        H+  V S  +N +      ++ WD  ++ W V     + T   H   +
Sbjct: 276 THSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS 212
                                  ++DV+       +       +  D N+     +    
Sbjct: 335 EIEEDILAVD---EHGDSLAEPGVFDVK------FLKKGWRSGMGADLNE----SLCCVC 381

Query: 213 VDKSIKIW 220
           +D+SI+ +
Sbjct: 382 LDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 25/279 (8%), Positives = 65/279 (23%), Gaps = 53/279 (18%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTA-------LPPTANPIRSLHEHTREVHS-- 111
           D +  +        L+      G +  Y          +      +           +  
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 112 --ADYNPTRRDSFITSSWDDTVKLW------------------TVDRPTSVRTFKEHAYC 151
             A  +       + +    T  +W                  T++   +V +    +  
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-----AHEFEILACDWNKYDDC 206
             +   + R   +  +   + T++I ++  +             +    +          
Sbjct: 187 ATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 207 LIASASVDKSIKIWDVRNYR---------------VPIAVLNGHGYAVRKVKFSPHRRNL 251
           L+A A    S     +                           H   V  + F+     L
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 252 LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV 290
             S  +D  +  WD +     +   + H +     +  +
Sbjct: 305 -CSAGWDGKLRFWD-VKTKERITTLNMHCDDIEIEEDIL 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 32/310 (10%), Positives = 73/310 (23%), Gaps = 43/310 (13%)

Query: 35  GNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA--- 91
               +HV+D+  A+  + +        G      +  + +  +     G +   D     
Sbjct: 16  YPNNLHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73

Query: 92  LPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-----------SWDDTVKLWTVDRPT 140
               AN      E  R ++S   +P  ++ + T                 +++++     
Sbjct: 74  NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133

Query: 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW 200
             +  +                     A  D         +    + +     +  +   
Sbjct: 134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPD 193

Query: 201 NKY----------------------DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
             Y                      D    A+A +       D++  +            
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298
                 SP   N       +  +  +D      +      HT + V  D        L  
Sbjct: 254 YFTGLRSPKDPN-QIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKK---GDKLYL 308

Query: 299 TGWDELVYVW 308
            G    + V+
Sbjct: 309 GGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 11/118 (9%), Positives = 28/118 (23%), Gaps = 4/118 (3%)

Query: 204 DDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL 263
               +   +   ++ + DV +  V  + +    +       +P  R      ++   +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 264 WDFMVEDALVGRYDHHTEFAVGVDMSVLV----EGLLASTGWDELVYVWQQGMDPRAV 317
            D                  VG  M           + +T            + P  +
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 8/152 (5%)

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
            I +++ + + +  V   T  ++      +    A   P +   +   +    +   D+ 
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 181 EMGSTMIIPAHEFEILACDWNKY-----DDCLIASASVDKSIKIWDVRNYRVPIAVLNGH 235
              +T                       D   + +                  + V +  
Sbjct: 71  TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 236 GYAVRKV--KFSPHRRNLLASCSYDMTVCLWD 265
                K    F   R+  L   + D ++ +  
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 2e-07
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 2/123 (1%)

Query: 144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY 203
           T    A     A  N     V    S              +           +AC     
Sbjct: 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234

Query: 204 DDCLIASASVDKSIKIWDVRNYR-VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC 262
           D+  +A+ S+D S+ +W++      PI +   H  +        +    + S   D  + 
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIK 293

Query: 263 LWD 265
            W+
Sbjct: 294 FWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186
                     +   +                    +    + S D ++ +W++ +     
Sbjct: 201 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 260

Query: 187 II---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
           II         + +  W   ++  I SA  D +IK W+V
Sbjct: 261 IIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 191 HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN 250
           H   I A   +  D   + SA  +  I  WD+          + H   +  +K +     
Sbjct: 11  HNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD- 68

Query: 251 LLASCSYDMTVCLWD 265
            L + S+D  + +  
Sbjct: 69  -LFTVSWDDHLKVVP 82

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 19/215 (8%), Positives = 48/215 (22%), Gaps = 8/215 (3%)

Query: 99  IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-HAYCVYNATW 157
            +  + H + + +   +   + +  ++  +  +  W +    S R F + HA  +     
Sbjct: 5   DQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
             +      + S D  L++      G                          + +     
Sbjct: 64  TSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-- 119

Query: 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD 277
               +  Y           Y    V  S  ++ +                   + V    
Sbjct: 120 --KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 278 HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
           H  E       +     +        + Y      
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 212

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 41/289 (14%), Positives = 70/289 (24%), Gaps = 47/289 (16%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRR 119
             +  L+ S      L +A A+G +  +D +   T    R   + H   +          
Sbjct: 13  KAITALSSSAD-GKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMITGIKTTSKGD 68

Query: 120 DSFITSSWDDTVKLWTVDR----------------------------------------P 139
               T SWDD +K+                                              
Sbjct: 69  --LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 140 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACD 199
               T    +Y       +     V                   S +    H  EI +  
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259
           ++     L+A+    K I      N+ +          A             LA+ S D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
           +V +W+                 +    +  L E  + S G D  +  W
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 43/293 (14%), Positives = 80/293 (27%), Gaps = 41/293 (13%)

Query: 3   VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV--AFDTA 60
           V  T +  +  + S      L V          + R+ ++DL    P     +    +  
Sbjct: 57  VIDTGYAVHISRMSA-SGRYLLVIGR-------DARIDMIDLWAKEPTKVAEIKIGIEAR 108

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
                          +  A       I D        P + +      V +  Y+P  R 
Sbjct: 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRV 165

Query: 121 SFITSSWDDTVKLWTV------------DRPTSVRTFKEHAYCVYNATWNP--RHSDVFC 166
           + I +S +    +  V            D      T    A  + +  W+   R+     
Sbjct: 166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA 225

Query: 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN--KYDDCLIASASVDKSIKIWDVRN 224
           + S    +     R + + + +          ++   KY      S   D SI +     
Sbjct: 226 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285

Query: 225 YRVP------IAVLNGHGYAVRKVKFSPHRRNLLASC------SYDMTVCLWD 265
              P      +A L G G     +K  P   +L              +V ++D
Sbjct: 286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 20/230 (8%), Positives = 52/230 (22%), Gaps = 22/230 (9%)

Query: 75  LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134
             +     G + + D     +   ++ +      VH +  + + R   +    D  + + 
Sbjct: 34  FSVTLRDAGQIALVDGD---SKKIVKVIDTG-YAVHISRMSASGR-YLLVIGRDARIDMI 88

Query: 135 -----TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
                   +   ++   E      +             A       I D   +    I+ 
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS 148

Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVR-----------NYRVPIAVLNGHGYA 238
                +    ++         AS +    I +V+           +         G    
Sbjct: 149 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM 288
           +    +    R  + +   +          +  L    D       G   
Sbjct: 209 LADGGWDSSHRYFMTAA-NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 8/170 (4%)

Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS 162
           +   +       +      F   S  D   +   + P          +  +  +      
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200

Query: 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-------DDCLIASASVDK 215
               +++G     +      G+   +   +                  D   IASAS DK
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
           +IKIW+V   +V   +  G     +++      +  L S S +  +   +
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 27/253 (10%), Positives = 60/253 (23%), Gaps = 8/253 (3%)

Query: 61  DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
                   S S      +    G+V+I+DT    T     ++   +  V    ++   + 
Sbjct: 59  HQTTVAKTSPSGY-YCASGDVHGNVRIWDTT-QTTHILKTTIPVFSGPVKDISWDSESKR 116

Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
                   +      +    +            N+            +  D         
Sbjct: 117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176

Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
                        + +       D  L AS   D +I +++  +        +     V 
Sbjct: 177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 236

Query: 241 KVKFSPHRR-----NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGL 295
                           +AS S D T+ +W+ +    +       T         +  +  
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWN-VATLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 296 LASTGWDELVYVW 308
           L S   +  +   
Sbjct: 296 LVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI 187
             +V    V   T    + EH++    A  +P       S      +RIWD  +    + 
Sbjct: 37  GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILK 95

Query: 188 IPAHEFEILACDWNKYDDC 206
                F     D +   + 
Sbjct: 96  TTIPVFSGPVKDISWDSES 114

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 13/145 (8%), Positives = 34/145 (23%), Gaps = 11/145 (7%)

Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD-----VFCSASGDCTLRIWDVRE 181
            D  V  ++ +  +                  PR           +     +  I     
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
               +I       I +   +         A     +  +DV+  +     +      +  
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTD 319

Query: 242 VKFSPHRRNLLASCSYDMTVCLWDF 266
           ++ S  R+  +     D  +  +  
Sbjct: 320 LRLSADRK-TVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 9e-06
 Identities = 13/164 (7%), Positives = 32/164 (19%), Gaps = 14/164 (8%)

Query: 68  WSESHDSLLIAAVADGSVKIYDTA----LPPTANPIRSLHEHTREVHSADYNPTRRDSFI 123
             ++    L            D           +    +       +     P    S  
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 124 TSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNATWNPRHSD--VFCSASGDCTLRIWD 178
                + +   +          R        +   +          +  A     L  +D
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
           V     T  +   +  +     +  D   +     D  I  + +
Sbjct: 305 V----KTRKVTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 15/204 (7%), Positives = 31/204 (15%), Gaps = 21/204 (10%)

Query: 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
                  +       +   D                 A      S      S        
Sbjct: 146 FPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 205

Query: 178 DVREMGSTMI-------IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI- 229
           D   +  +         IP                    +   D +          V   
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV-PRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 230 -----AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAV 284
                  L                            +  +D      +    ++ T+  +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDV-KTRKVTEVKNNLTDLRL 322

Query: 285 GVDMSVLVEGLLASTGWDELVYVW 308
             D        +     D  +Y +
Sbjct: 323 SADRK-----TVMVRKDDGKIYTF 341

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 28/303 (9%), Positives = 65/303 (21%), Gaps = 38/303 (12%)

Query: 37  GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA--LPP 94
            ++ V+D    A     +   D          +              S+   D       
Sbjct: 11  DKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69

Query: 95  TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----------SVRT 144
               + +  E  + +  A  +P  +   I  S           +PT          S R 
Sbjct: 70  GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129

Query: 145 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACD----- 199
             E    +    W    S ++        +       +    I           D     
Sbjct: 130 AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189

Query: 200 --------------WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
                           + D       +    +   D+    + +  +            +
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249

Query: 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELV 305
           P +            +  +D     ++      H+ ++V V         +   G    +
Sbjct: 250 PAKTRA---FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTD---GSTVWLGGALGDL 303

Query: 306 YVW 308
             +
Sbjct: 304 AAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 18/187 (9%), Positives = 46/187 (24%), Gaps = 17/187 (9%)

Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
           RD  +  +  D + +   ++    +     +           P     + + +   +L  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 177 WDVREMGSTMIIPAHEFEILACDWN----KYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232
            D+    +   I     E             D   +A       +++         +A+ 
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 233 NGHGYAVRK----------VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF 282
           +    + RK          + ++      L     D+ V   +               E 
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGS-KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 283 AVGVDMS 289
               D+ 
Sbjct: 180 YAQPDVL 186

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 22/243 (9%), Positives = 47/243 (19%), Gaps = 43/243 (17%)

Query: 75  LLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW 134
             +     G + + D +   T      L +    VH +  + + R        D  V + 
Sbjct: 34  FSVTLRDAGQIALIDGS---TYEIKTVL-DTGYAVHISRLSASGR-YLFVIGRDGKVNMI 88

Query: 135 TVD-----RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
            +          ++   E      +             A       I D   +    I  
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
                                                            V  +  S +R 
Sbjct: 149 TR---------------------------------GMTYDEQEYHPEPRVAAILASHYRP 175

Query: 250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
             + +      + L D+   + L         F     +       + +      + V  
Sbjct: 176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVID 235

Query: 310 QGM 312
              
Sbjct: 236 TKE 238

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 14/148 (9%), Positives = 33/148 (22%), Gaps = 22/148 (14%)

Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
           +  SW   V     DRPT           + +       +    +      + + D    
Sbjct: 7   MRESWKVHVAPE--DRPTQQ---------MNDWDLE---NLFSVTLRDAGQIALIDGSTY 52

Query: 183 GSTMIIPAHEF-EILACDWNKYDDCLIASASVDKSIKIWDVRNYRV----PIAVLNGHGY 237
               ++       I            +     D  + + D+          I + +    
Sbjct: 53  EIKTVLDTGYAVHISRLS---ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109

Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWD 265
                      +  +A   +     + D
Sbjct: 110 IETSKMEGWEDKYAIAGAYWPPQYVIMD 137

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
           +I +S  D + +  V       T    +     A  +P  + V+ + +    + I D   
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 182 MGSTMIIPAHEFEILACDWNKYDDC 206
                 +PA                
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQV 88

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 22/267 (8%), Positives = 53/267 (19%), Gaps = 40/267 (14%)

Query: 35  GNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA--- 91
            +  + V+D++    +                  S     + +A      V I DTA   
Sbjct: 10  ESDNISVIDVT----SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 92  -------------------------LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS 126
                                        ++ +  +   +  V               S 
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186
               + +      T           +   +       +  +  G             S +
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 187 IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN--------GHGYA 238
               +                +        +   D     V +              G  
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWD 265
              +  +P  + +  + S+  TV + D
Sbjct: 246 PAGIAVTPDGKKVYVALSFCNTVSVID 272

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.53
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.48
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.36
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.13
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.58
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.1
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.1
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.06
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.92
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.15
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.02
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.94
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.9
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.89
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.88
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.45
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.96
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.63
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.57
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.3
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.93
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.92
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.8
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	93.22
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	92.39
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.33
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.55
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.1
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.9
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	80.89

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-48  Score=317.37  Aligned_cols=287  Identities=17%  Similarity=0.209  Sum_probs=249.9

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCC--cceeeeeecCCCCeeEEEecCCCCCeEEEEE
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAP--ALTELVAFDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      +++|...|.+++|+|  +++++++++       ||.|+|||+.....  .........|.+.|.+++|+|++ .+|++|+
T Consensus        47 ~~~H~~~V~~v~fs~--~g~~latg~-------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~  116 (337)
T d1gxra_          47 TLNHGEVVCAVTISN--PTRHVYTGG-------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGG  116 (337)
T ss_dssp             EECCSSCCCEEEECS--SSSEEEEEC-------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEE
T ss_pred             ECCCCCcEEEEEECC--CCCEEEEEE-------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEee
Confidence            356889999999999  788888876       88999999986542  22333344788899999999998 6999999


Q ss_pred             cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           81 ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      .||.|++||+... .......+..|...+.+++|+|++. ++++++.|+.|++|++.+++.......|...+.+++|+++
T Consensus       117 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         117 EASTLSIWDLAAP-TPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             SSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998754 2344556778999999999999988 9999999999999999999999998899999999999998


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCcee
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR  240 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~  240 (317)
                       +..+++++.|+.+++||+++++.+..+. +...|.+++|+| +++++++++.|+.+++||++..+  ......|...|+
T Consensus       195 -~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~i~  269 (337)
T d1gxra_         195 -GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVL  269 (337)
T ss_dssp             -SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEE
T ss_pred             -ccccccccccccccccccccceeecccc-cccceEEEEEcc-cccccceeccccccccccccccc--cccccccccccc
Confidence             8899999999999999999988777665 788999999999 99999999999999999998865  345677999999


Q ss_pred             EEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          241 KVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      +++|+|+++ +|++++.||.|++||+.+++.+ .. ..|...|.+++|+|+ +++|++|+.||.|++||+
T Consensus       270 ~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~-~~-~~~~~~v~~~~~s~d-~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         270 SLKFAYCGK-WFVSTGKDNLLNAWRTPYGASI-FQ-SKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEETTTCCEE-EE-EECSSCEEEEEECTT-SCEEEEEETTSCEEEEEE
T ss_pred             eEEECCCCC-EEEEEeCCCeEEEEECCCCCEE-EE-ccCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEE
Confidence            999999998 7999999999999999988743 33 347788999999998 789999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8e-46  Score=298.85  Aligned_cols=284  Identities=15%  Similarity=0.125  Sum_probs=233.4

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      ..+..++++|+  +..++.+.       ++.|.+|+++.... ...  ..+|...|++++|+|++ ++|++|+.||.|++
T Consensus        18 ~~~~~~a~~~~--g~~l~~~~-------~~~v~i~~~~~~~~-~~~--~~~H~~~v~~~~~sp~g-~~latg~~dg~i~i   84 (311)
T d1nr0a1          18 GTAVVLGNTPA--GDKIQYCN-------GTSVYTVPVGSLTD-TEI--YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRI   84 (311)
T ss_dssp             TCCCCCEECTT--SSEEEEEE-------TTEEEEEETTCSSC-CEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred             CCeEEEEEcCC--CCEEEEEe-------CCEEEEEECCCCce-eEE--EcCCCCCEEEEEEeCCC-CeEeccccCceEee
Confidence            35667899994  44444444       55899999986542 222  23789999999999998 69999999999999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC--CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ||+.... ......+..|..+|.+++|+|+++ ++++++.  +..+++|++++++....+..|...|++++|+|++..++
T Consensus        85 wd~~~~~-~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1          85 WDTTQTT-HILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             EESSSTT-CCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             eeeeccc-cccccccccccCcccccccccccc-ccccccccccccccccccccccccccccccccccccccccccceeee
Confidence            9998652 222345778999999999999998 7888765  45699999999999999999999999999999955678


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE-------ecCCCc
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL-------NGHGYA  238 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~~  238 (317)
                      ++|+.||.|++||+++++....+..|..+|.++.|+| +++++++++.|+.|++||.++.+. ...+       .+|...
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~  240 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGS  240 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSC
T ss_pred             cccccccccccccccccccccccccccccccccccCc-cccccccccccccccccccccccc-ccccccccccccccccc
Confidence            8999999999999999999999999999999999999 999999999999999999987653 3333       357889


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc-eeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      |++++|+|+++ +|++|+.||.|+|||+++++ ++..+..|.. ....+.+.++ ++.|++++.||.|++||++
T Consensus       241 V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~-~~~~l~~~~~~~~~~~~~~~~-~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGT-KIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEEEEECCSSGGGCEEEEEEC-SSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCCC-EEEEEeCCCeEEEEECCCCc-EEEEEECCCCccceEEEEEec-CCEEEEEECCCEEEEEeCC
Confidence            99999999998 79999999999999999886 5566665532 2233445555 5689999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.8e-45  Score=292.71  Aligned_cols=283  Identities=26%  Similarity=0.407  Sum_probs=253.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..+|++++|+|  ++.++++++.      ||.|+|||+.+... ...+  ..|...|.+++|+|++ .+++++..++.+
T Consensus        16 H~~~I~~l~~sp--~~~~l~s~s~------Dg~i~iWd~~~~~~-~~~~--~~h~~~V~~~~~~~~~-~~~~~~~~~~~~   83 (317)
T d1vyhc1          16 HRSPVTRVIFHP--VFSVMVSASE------DATIKVWDYETGDF-ERTL--KGHTDSVQDISFDHSG-KLLASCSADMTI   83 (317)
T ss_dssp             CSSCEEEEEECS--SSSEEEEEES------SSCEEEEETTTCCC-CEEE--CCCSSCEEEEEECTTS-SEEEEEETTSCC
T ss_pred             CCCCeEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCCE-EEEE--eCCCCcEEEEeeeccc-cccccccccccc
Confidence            889999999999  5667777775      99999999987652 2222  3688999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      .+|+....   .....+..|...+.++.|+|++. .+++++.|+.+++||+++++....+..|...+.+++|+|+ +.++
T Consensus        84 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  158 (317)
T d1vyhc1          84 KLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLI  158 (317)
T ss_dssp             CEEETTSS---CEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEE
T ss_pred             cccccccc---ccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC-CCEE
Confidence            99998755   55666778999999999999988 8999999999999999999999999999999999999998 8999


Q ss_pred             EEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-------------------CCcEEEEEecCCcEEEEEccCCC
Q 021121          166 CSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-------------------DDCLIASASVDKSIKIWDVRNYR  226 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-------------------~~~~l~~~~~d~~i~v~d~~~~~  226 (317)
                      ++++.|+.|++|++++++....+..+...+.++.++|.                   .+.++++++.|+.|++||+++++
T Consensus       159 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence            99999999999999999999999999999999998873                   23478999999999999999866


Q ss_pred             ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEE
Q 021121          227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY  306 (317)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  306 (317)
                       ++..+.+|...|.+++|+|+++ +|++++.||.|++||+.+++ ++..+.+|...|++++|+|+ +.+|++|+.||.|+
T Consensus       239 -~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~V~~~~~s~~-~~~l~s~s~Dg~i~  314 (317)
T d1vyhc1         239 -CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVK  314 (317)
T ss_dssp             -EEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSS-SSCEEEEETTSEEE
T ss_pred             -EEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEE
Confidence             5788889999999999999998 79999999999999999886 66788999999999999998 78999999999999


Q ss_pred             EEe
Q 021121          307 VWQ  309 (317)
Q Consensus       307 ~w~  309 (317)
                      +||
T Consensus       315 iWd  317 (317)
T d1vyhc1         315 VWE  317 (317)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-45  Score=303.74  Aligned_cols=289  Identities=19%  Similarity=0.263  Sum_probs=239.5

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcc---------------eeeeeecCCCCeeEEEe
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPAL---------------TELVAFDTADGVYDLAW   68 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~   68 (317)
                      ++|...|+||+|+|  ++.++++++       |+.|+|||+.+.....               .......+...|++++|
T Consensus        59 ~~H~~~V~~l~fs~--dg~~lasg~-------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  129 (388)
T d1erja_          59 LDHTSVVCCVKFSN--DGEYLATGC-------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF  129 (388)
T ss_dssp             EECSSCCCEEEECT--TSSEEEEEC-------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE
T ss_pred             CCCCCcEEEEEECC--CCCEEEEEe-------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE
Confidence            56889999999999  677877765       8899999997654211               11112246778999999


Q ss_pred             cCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc
Q 021121           69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH  148 (317)
Q Consensus        69 ~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  148 (317)
                      +|++ .+|++|+.||.|++|+...+   +......+|...|.+++|++++. .+++++.++.+++||.++.........+
T Consensus       130 s~~~-~~l~s~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         130 SPDG-KFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             CTTS-SEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             CCCC-Ccceeccccccccccccccc---ccccccccccccccccccccccc-cccccccceeeeeeeccccccccccccc
Confidence            9998 69999999999999998765   67777889999999999999987 8999999999999999988877766644


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-------ccCccceEEEEecCCCCcEEEEEecCCcEEEEE
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-------PAHEFEILACDWNKYDDCLIASASVDKSIKIWD  221 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d  221 (317)
                       ....++.+.+.++++|++++.||.|++||.+++.....+       ..|...|.+++|+| ++++|++++.|+.|++||
T Consensus       205 -~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd  282 (388)
T d1erja_         205 -DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWN  282 (388)
T ss_dssp             -SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred             -cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEe
Confidence             446667777766899999999999999999988766554       35778899999999 999999999999999999


Q ss_pred             ccCCCc-----------cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEE--
Q 021121          222 VRNYRV-----------PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM--  288 (317)
Q Consensus       222 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--  288 (317)
                      +++...           .......|...|.+++|+|+++ +|++|+.||.|++||+++++ ++..+.+|.+.|.++++  
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~-~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECS
T ss_pred             ccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCc-EEEEEeCCCCCEEEEEEec
Confidence            976442           2344567889999999999998 79999999999999999887 66789999999999875  


Q ss_pred             ----EeccCCeEEEeecCCcEEEEecC
Q 021121          289 ----SVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       289 ----~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                          +|+ +.+|+||+.||.|++|+++
T Consensus       361 ~~~~spd-~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         361 GSSLGPE-YNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCTTCTT-CEEEEEEETTSEEEEEEEE
T ss_pred             CcccCCC-CCEEEEEeCCCEEEEEeee
Confidence                456 6799999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-43  Score=291.05  Aligned_cols=288  Identities=14%  Similarity=0.168  Sum_probs=230.0

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee-eecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-AFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      ..+|+|++|+|  ++.++++++.      +|.|+|||++...  ..... ..+|..+|++++|+|++ ++|++|+.|+.|
T Consensus         7 ~~pIt~~~~s~--dg~~la~~~~------~~~i~iw~~~~~~--~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i   75 (371)
T d1k8kc_           7 VEPISCHAWNK--DRTQIAICPN------NHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNA   75 (371)
T ss_dssp             SSCCCEEEECT--TSSEEEEECS------SSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCE
T ss_pred             CCCeEEEEECC--CCCEEEEEeC------CCEEEEEECCCCC--EEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeE
Confidence            47899999999  5667766665      8999999997654  22233 23789999999999998 699999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCcee----EEeeccccceEEEEEecCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV----RTFKEHAYCVYNATWNPRH  161 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~  161 (317)
                      ++||+... .......+..|...|.+++|+|+++ .+++++.|+.|++|+++.....    .....|...|.+++|+|+ 
T Consensus        76 ~vWd~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-  152 (371)
T d1k8kc_          76 YVWTLKGR-TWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-  152 (371)
T ss_dssp             EEEEEETT-EEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-
T ss_pred             EEEeeccc-ccccccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccccc-
Confidence            99999764 2234445667899999999999998 9999999999999998876543    233467889999999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCC------------------ceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          162 SDVFCSASGDCTLRIWDVREMG------------------STMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      +.+|++|+.|+.+++||+....                  .......|...+.+++|+| ++++|++++.|+.|++||++
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeee
Confidence            8999999999999999986432                  2334456788899999999 99999999999999999999


Q ss_pred             CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee------------------------------
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV------------------------------  273 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~------------------------------  273 (317)
                      +.+ .+..+..|..+|.+++|+|+++ +|++| .|+.+++|.........                              
T Consensus       232 ~~~-~~~~~~~~~~~v~s~~fs~d~~-~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (371)
T d1k8kc_         232 KKM-AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA  308 (371)
T ss_dssp             GTT-EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred             ccc-ceeeeecccccceeeeecCCCC-EEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEeccccee
Confidence            866 4788889999999999999997 66655 57777776654321000                              


Q ss_pred             ----------eeeecccceeEeEEEEeccC---CeEEEeecCCcEEEEecCC
Q 021121          274 ----------GRYDHHTEFAVGVDMSVLVE---GLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       274 ----------~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~i~~w~~~~  312 (317)
                                .....|.+.|+++++.+...   ..|+|+|.||.|++||++.
T Consensus       309 ~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             EEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                      00113788899999988632   2689999999999999965

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-41  Score=274.42  Aligned_cols=284  Identities=22%  Similarity=0.336  Sum_probs=242.8

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..+|++++|+|  ++.++++++.      ||.|+|||+..... ..  ....|...|.+++|+|++ .++++|+.|+.+
T Consensus        54 H~~~I~~l~~s~--~~~~l~sgs~------Dg~v~iWd~~~~~~-~~--~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i  121 (340)
T d1tbga_          54 HLAKIYAMHWGT--DSRLLVSASQ------DGKLIIWDSYTTNK-VH--AIPLRSSWVMTCAYAPSG-NYVACGGLDNIC  121 (340)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEET------TTEEEEEETTTTEE-EE--EEECSCSCEEEEEECTTS-SEEEEEETTCCE
T ss_pred             CCCCEEEEEECC--CCCEEEEEEC------CCceeeeeccccee-EE--EEecccccEEeeEeeccc-eeeeeeccccee
Confidence            889999999999  6777777775      99999999987642 11  223588899999999998 699999999999


Q ss_pred             EEEEeCCCCCC-CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           86 KIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        86 ~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      ++|+....... .....+.+|...........+.  .+.....+.....+.............+...+....+.+. ..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  198 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRL  198 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT-SSE
T ss_pred             ecccccccccccccceeccccccccccccccccc--ccccccccccccccccccccccccccccceeEeeeccccc-cce
Confidence            99998764322 2334566777777776666553  6888888999999999888777777778888999999998 889


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEE--ecCCCceeEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL--NGHGYAVRKV  242 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~v~~~  242 (317)
                      +++++.|+.|++||+++++.+..+..|..+|++++|+| ++++|++++.|+.|++||++.... ...+  ..+...|.++
T Consensus       199 ~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSV  276 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEE
T ss_pred             eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeeccccc-ccccccccccCceEEE
Confidence            99999999999999999999999999999999999999 999999999999999999998654 3333  3566789999


Q ss_pred             EecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      +|+|+++ +|++|+.||.|++||+.+++ .+..+.+|.++|++++|+|+ +.+|+||+.||.|++||
T Consensus       277 ~~s~~~~-~l~~g~~dg~i~iwd~~~~~-~~~~~~~H~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         277 SFSKSGR-LLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECSSSC-EEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTT-SSCEEEEETTSCEEEEC
T ss_pred             EECCCCC-EEEEEECCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEeCC-CCEEEEEccCCEEEEeC
Confidence            9999998 79999999999999999876 67889999999999999998 78999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-41  Score=270.72  Aligned_cols=284  Identities=12%  Similarity=0.119  Sum_probs=220.6

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      .|...|++++|+|  ++.++++++.      ||.|++||+.++..  .......|...|++++|+|++  .+++++.|+.
T Consensus        10 GH~~~V~~l~~s~--dg~~l~s~s~------Dg~v~vWd~~~~~~--~~~~~~~h~~~v~~v~~~~~g--~~~~~~~d~~   77 (299)
T d1nr0a2          10 GHNKAITALSSSA--DGKTLFSADA------EGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKG--DLFTVSWDDH   77 (299)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEET------TSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTS--CEEEEETTTE
T ss_pred             CCCCCcEEEEECC--CCCEEEEEcC------CCeEEEEECCCCcE--EEEEcCCCCCcEEEEEeeccc--eeecccceee
Confidence            3889999999999  6777777775      99999999987652  222223578899999999987  3566778999


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      +++|+...............+...+.+++|+|++. ++++++ ++.+.+|+...  .....  ....+.+++|+|+ +++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~-~~~  150 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSND-KQF  150 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTT-SCE
T ss_pred             EEEeccCCccccccccccccccccccccccccccc-cccccc-ccccccccccc--ccccc--ccccccccccccc-ccc
Confidence            99999875433333334456788899999999987 555554 67999998542  22222  3456789999998 899


Q ss_pred             EEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc--EEEEecCCCceeE
Q 021121          165 FCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP--IAVLNGHGYAVRK  241 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~v~~  241 (317)
                      +++++.||.|++||+++++... ....|...|.+++|+| +++++++++.|+.|++||+.+....  ...+..|...|++
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~  229 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC  229 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998776443 3346888999999999 9999999999999999999876432  2345678999999


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccce-eeee-ecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-VGRY-DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ++|+|+++ +|++|+.||.|++||+++.... .... ..+...+..+.|. + +.+|++++.||.|++||+.
T Consensus       230 l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         230 VSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-N-ETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-E-TTEEEEEETTSCEEEEECC
T ss_pred             cccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-C-CCEEEEEeCCCEEEEEecc
Confidence            99999998 7999999999999999876522 2222 2344567766654 4 6799999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-41  Score=271.28  Aligned_cols=289  Identities=11%  Similarity=0.145  Sum_probs=220.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeee-eecC-CCCeeEEEecCCC-CCeEEEEEcCCeE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELV-AFDT-ADGVYDLAWSESH-DSLLIAAVADGSV   85 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~-~~~l~~~~~dg~i   85 (317)
                      .+++++|+|. ...++++.+.      ...|+.|+.....  ..... ..+| ...|++++|+|+. ..+|++|+.||+|
T Consensus        19 ~~t~l~~~~~-~~~la~~~~~------~~~i~~~~~~~~~--~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i   89 (325)
T d1pgua1          19 FTTHLSYDPT-TNAIAYPCGK------SAFVRCLDDGDSK--VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   89 (325)
T ss_dssp             CCCCCEEETT-TTEEEEEETT------EEEEEECCSSCCS--SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CeEEEEECCC-CCEEEEEeCC------CEEEEEEeCCCCC--ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCE
Confidence            5678999995 4455555442      2334555544332  22222 2244 5679999999842 3689999999999


Q ss_pred             EEEEeCCCCCCCCc-----eeeccCCcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCCceeEEeeccccceEEEEEe
Q 021121           86 KIYDTALPPTANPI-----RSLHEHTREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWN  158 (317)
Q Consensus        86 ~v~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (317)
                      ++||+..+......     ..+..|.++|.+++|++++. ++++++  .++.+.+|+.++++.+..+.+|...|.+++|+
T Consensus        90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  168 (325)
T d1pgua1          90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK  168 (325)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred             EEeeecCCcceeeeecccccccccccCcEEEEEECCCCC-ccceeeccccceEEEEeecccccceeeeeccccccccccc
Confidence            99998764222111     23456889999999999998 666554  46789999999999999999999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCCceeee---ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          159 PRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      |++..++++++.|+.+++||.+..+.....   ..|...|.+++|+|..+.++++++.|+.|++||+++++ .+..+.+|
T Consensus       169 ~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~  247 (325)
T d1pgua1         169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDD  247 (325)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBT
T ss_pred             ccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc-cccccccc
Confidence            996667889999999999999877655544   35677899999999557899999999999999999876 47788888


Q ss_pred             CCceeEEEec---CCCCeeEEeeecCCeEEEEecccccceeeeeecccc--eeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          236 GYAVRKVKFS---PHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE--FAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       236 ~~~v~~~~~~---~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      ..++..+.|+   |+++ +|++++.|+.|+|||+++++ ++..+..|..  .+..+++.+.++.+|++++.||.|++||+
T Consensus       248 ~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCC-EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            8887766666   6777 69999999999999999886 4455554443  34455555553568999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=270.28  Aligned_cols=252  Identities=17%  Similarity=0.296  Sum_probs=219.9

Q ss_pred             eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee--eccCCcceEEEEEecCCCCEEEEEcCCC
Q 021121           52 TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS--LHEHTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        52 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      +.+..++|...|.+++|+|++ .+|++|+ ||.|+|||+........+..  ...|.+.|.+++|+|+++ +|++++.||
T Consensus        43 ~~~~~~~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEAS  119 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSS
T ss_pred             eEEEECCCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-EEEEeeccc
Confidence            456666899999999999998 6899987 79999999987644444433  347899999999999998 999999999


Q ss_pred             EEEEEEcCCC--ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE
Q 021121          130 TVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       130 ~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  207 (317)
                      .|++||+...  +....+..|...+..++|+|+ +.++++++.|+.|++||+++++.......|...+.+++|++ ++..
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~  197 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTK  197 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            9999998754  455667788899999999998 88999999999999999999998888888999999999999 8999


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      +++++.|+.+++||+++.+. +..+ .|...|.+++|+|+++ +|++++.|+.+++||+++.+.  .....|...|++++
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~-~~~~-~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~  272 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLK  272 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEE
T ss_pred             ccccccccccccccccccee-eccc-ccccceEEEEEccccc-ccceecccccccccccccccc--ccccccccccceEE
Confidence            99999999999999998663 4444 4788999999999998 699999999999999988763  35667899999999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |+|+ +++|++++.||.|++||+....
T Consensus       273 ~s~~-g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         273 FAYC-GKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             ECTT-SSEEEEEETTSEEEEEETTTCC
T ss_pred             ECCC-CCEEEEEeCCCeEEEEECCCCC
Confidence            9998 7899999999999999998654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-39  Score=262.73  Aligned_cols=246  Identities=22%  Similarity=0.282  Sum_probs=204.6

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc--C
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA--D   82 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d   82 (317)
                      .|...|++++|+|  ++.++++++.      ||.|++||+........ .....|..+|.+++|+|++ .++++++.  +
T Consensus        56 ~H~~~v~~~~~sp--~g~~latg~~------dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~  125 (311)
T d1nr0a1          56 EHSHQTTVAKTSP--SGYYCASGDV------HGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSES-KRIAAVGEGRE  125 (311)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEET------TSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTS-CEEEEEECCSS
T ss_pred             CCCCCEEEEEEeC--CCCeEecccc------CceEeeeeeeccccccc-cccccccCccccccccccc-ccccccccccc
Confidence            3778999999999  5777777775      99999999987764332 2234688899999999998 57877775  4


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ..+++|+++..   +....+.+|...|.+++|+|+++..+++|+.||.|++||+++++....+..|..+|+++.|+|+ +
T Consensus       126 ~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~-~  201 (311)
T d1nr0a1         126 RFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-G  201 (311)
T ss_dssp             CSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-S
T ss_pred             ccccccccccc---cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcc-c
Confidence            56999999876   6667788999999999999999867899999999999999999999999999999999999998 8


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeec-------cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIP-------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      +++++++.|+.|++||+++++....+.       +|...|.+++|+| ++++|++|+.||.|++||+++++ ++..+..|
T Consensus       202 ~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~-~~~~l~~~  279 (311)
T d1nr0a1         202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLK-VEKTIPVG  279 (311)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE-EEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCc-EEEEEECC
Confidence            999999999999999999887665543       5778899999999 99999999999999999999876 46666655


Q ss_pred             CC-ceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          236 GY-AVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       236 ~~-~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      .. ....+.+.+++. .|++++.||.|++||.+
T Consensus       280 ~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         280 TRIEDQQLGIIWTKQ-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSGGGCEEEEEECSS-CEEEEETTCCEEEEETT
T ss_pred             CCccceEEEEEecCC-EEEEEECCCEEEEEeCC
Confidence            43 223334444455 58899999999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-40  Score=271.92  Aligned_cols=245  Identities=20%  Similarity=0.253  Sum_probs=207.0

Q ss_pred             CCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCC
Q 021121           59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR  138 (317)
Q Consensus        59 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  138 (317)
                      ..++|+|++|+|++ .+||+|+.||.|++||+..+ ....+..+++|.++|.+++|+|+++ +|++++.|+.|++||+++
T Consensus         6 ~~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCC-EEEEEECCCeEEEEeecc
Confidence            34689999999998 69999999999999999754 2345667889999999999999998 999999999999999987


Q ss_pred             Ccee--EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce----eeeccCccceEEEEecCCCCcEEEEEe
Q 021121          139 PTSV--RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST----MIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       139 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      +...  ..+..|...|.+++|+|+ ++.+++++.|+.+++|++......    .....|...|.+++|+| ++++|++|+
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s  160 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGS  160 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred             cccccccccccccccccccccccc-cccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccc
Confidence            7544  345578889999999999 899999999999999998876543    23346788999999999 999999999


Q ss_pred             cCCcEEEEEccCCC-----------------ccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee
Q 021121          213 VDKSIKIWDVRNYR-----------------VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR  275 (317)
Q Consensus       213 ~d~~i~v~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  275 (317)
                      .|+.|++||.....                 ........|...|.+++|+|+++ +|++++.|+.|++||+.+++ .+..
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~-~~~~  238 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKM-AVAT  238 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTT-EEEE
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEEeeeccc-ceee
Confidence            99999999986432                 13445567889999999999998 69999999999999999876 5678


Q ss_pred             eecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          276 YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       276 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      +..|..+|.+++|+|+ +.+|++ +.|+.+++|....
T Consensus       239 ~~~~~~~v~s~~fs~d-~~~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         239 LASETLPLLAVTFITE-SSLVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             EECSSCCEEEEEEEET-TEEEEE-ETTSSCEEEEEET
T ss_pred             eecccccceeeeecCC-CCEEEE-EcCCceEEEEeeC
Confidence            8899999999999998 666665 5588888877654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-39  Score=267.55  Aligned_cols=271  Identities=20%  Similarity=0.326  Sum_probs=218.6

Q ss_pred             CceEEEEecCCCCCc-ceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC---------------Cc
Q 021121           36 NGRVHVLDLSPAAPA-LTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN---------------PI   99 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~---------------~~   99 (317)
                      ++...+|+....... ......++|.+.|++++|+|+| .+|++|+ |+.|++||+.+++...               ..
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT  114 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeeccccccccccccccc
Confidence            778999997654421 2233445799999999999998 5899886 8899999997652110               01


Q ss_pred             eeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeC
Q 021121          100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV  179 (317)
Q Consensus       100 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (317)
                      .....|...|.+++|+|+++ +|++|+.||.|++||...++.+..+.+|...|.++.++++ +..+++++.++.+++||.
T Consensus       115 ~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~  192 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDL  192 (388)
T ss_dssp             ----CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred             ccccCCCCCEEEEEECCCCC-cceecccccccccccccccccccccccccccccccccccc-cccccccccceeeeeeec
Confidence            12235778899999999988 9999999999999999999999999999999999999998 888999999999999999


Q ss_pred             CCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEE-------EecCCCceeEEEecCCCCeeE
Q 021121          180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAV-------LNGHGYAVRKVKFSPHRRNLL  252 (317)
Q Consensus       180 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l  252 (317)
                      ++.........+. ...++.+.+.++++|++++.|+.|++||.++... ...       ..+|...|++++|+|+++ +|
T Consensus       193 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l  269 (388)
T d1erja_         193 RTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ-SV  269 (388)
T ss_dssp             TTTEEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS-EE
T ss_pred             ccccccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCcc-ceeeccccccccCCCCCEEEEEECCCCC-EE
Confidence            9887776666444 4556666666899999999999999999987653 222       346888999999999998 79


Q ss_pred             EeeecCCeEEEEeccccc-----------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          253 ASCSYDMTVCLWDFMVED-----------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       253 ~~~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ++++.||.|++||+++.+           ........|...|.+++|+|+ +.+|++|+.||.|++||+....
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCC
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC-CCEEEEEeCCCEEEEEECCCCc
Confidence            999999999999997654           223455678889999999998 7899999999999999998654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-38  Score=252.40  Aligned_cols=248  Identities=24%  Similarity=0.340  Sum_probs=227.5

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.++|++++|+|++ .+|++|+.||+|++||+.++   +.+..+..|...|.+++|+|++. +++++..++.+.+|+.
T Consensus        14 ~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~h~~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDF   88 (317)
T ss_dssp             ECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEET
T ss_pred             cCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---CEEEEEeCCCCcEEEEeeecccc-cccccccccccccccc
Confidence            4799999999999998 69999999999999999876   77888899999999999999998 9999999999999999


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      ...+....+..|...+.++.|+|+ ++.+++++.|+.+++||+++++....+..|...+.+++|+| ++++|++++.|+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~  166 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQT  166 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             cccccccccccccccceeeeccCC-CceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCe
Confidence            998888888889999999999998 88999999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCCC-------------------eeEEeeecCCeEEEEecccccceeeeee
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR-------------------NLLASCSYDMTVCLWDFMVEDALVGRYD  277 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~l~~~~~d~~i~vwd~~~~~~~~~~~~  277 (317)
                      |++|+.++.+ ....+..|...+.++.|+|++.                   .++++++.|+.|++||+++++ ++..+.
T Consensus       167 v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~  244 (317)
T d1vyhc1         167 VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLV  244 (317)
T ss_dssp             EEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred             EEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc-EEEEEe
Confidence            9999999866 4778888999999999988642                   258899999999999999886 667888


Q ss_pred             cccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          278 HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       278 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +|...|.+++|+|+ +.+|++++.||.|++||+....
T Consensus       245 ~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         245 GHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             CCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSC
T ss_pred             CCCCCEEEEEECCC-CCEEEEEECCCeEEEEECCCCc
Confidence            99999999999998 7899999999999999997653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-36  Score=245.01  Aligned_cols=277  Identities=18%  Similarity=0.274  Sum_probs=211.2

Q ss_pred             cCcce-eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNG-YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v-~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      |...| +|++|++    .++++++.      ||.|+|||+.+... .  .....|.+.|++++|+|+  .+|++|+.|+.
T Consensus        11 H~~~vitc~~~~~----~~l~tgs~------Dg~i~vWd~~~~~~-~--~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~   75 (355)
T d1nexb2          11 HMTSVITCLQFED----NYVITGAD------DKMIRVYDSINKKF-L--LQLSGHDGGVWALKYAHG--GILVSGSTDRT   75 (355)
T ss_dssp             CSSSCEEEEEEET----TEEEEEET------TTEEEEEETTTTEE-E--EEEECCSSCEEEEEEETT--TEEEEEETTCC
T ss_pred             cCCCcEEEEEECC----CEEEEEeC------CCeEEEEECCCCcE-E--EEEECCCCCEEEEEEcCC--CEEEEEecccc
Confidence            66665 5555543    35555554      99999999987541 2  222368999999999986  38999999999


Q ss_pred             EEEEEeCCCCCCC-------C--------------c---------e----------------------------------
Q 021121           85 VKIYDTALPPTAN-------P--------------I---------R----------------------------------  100 (317)
Q Consensus        85 i~v~~~~~~~~~~-------~--------------~---------~----------------------------------  100 (317)
                      |++|+........       .              +         .                                  
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            9999987541000       0              0         0                                  


Q ss_pred             eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCC
Q 021121          101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR  180 (317)
Q Consensus       101 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (317)
                      ....|...+  ..+.+++. +++++..|+.|++||+.+++.+.....+...+.++.++|+ +..+++++.|+.|++||++
T Consensus       156 ~~~~~~~~v--~~~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         156 VLRGHMASV--RTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             EEECCSSCE--EEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETT
T ss_pred             eeeeccccc--cccccccc-eeeeecccceeeeeecccccceeeeecccccccccccccc-ceeeecccccceEEeeecc
Confidence            000011111  12334455 8889999999999999999999888888999999999998 8899999999999999999


Q ss_pred             CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE-ecCCCCeeEEeeecCC
Q 021121          181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK-FSPHRRNLLASCSYDM  259 (317)
Q Consensus       181 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~d~  259 (317)
                      ++..+..+.+|...|.++++++   ++|++++.||.|++||+++...   .+..|...+.++. +++++. ++++| .|+
T Consensus       232 ~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~~g-~d~  303 (355)
T d1nexb2         232 NGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDN-ILVSG-SEN  303 (355)
T ss_dssp             TCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCE---EEEEECTTCCCCCEEEECSS-EEEEE-ETT
T ss_pred             cccccccccccccccccccccc---ceeeeeecccccccccccccce---ecccccCCceEEEEEcCCCC-EEEEE-eCC
Confidence            9999999999999999999865   5899999999999999987653   3444555666654 455655 56555 589


Q ss_pred             eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      .|++||+++++.+...+.+|...|.+++|+|+  .++++++.||.++||.++
T Consensus       304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEEe
Confidence            99999999988555567889999999999974  588889999997776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-36  Score=241.64  Aligned_cols=244  Identities=16%  Similarity=0.192  Sum_probs=197.7

Q ss_pred             eecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceee-ccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           56 AFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSL-HEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        56 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ..+|.++|++++|+|++ .+|++|+.||.|++||++++   +....+ ..|...|.+++|+|++.  +++++.|+.+++|
T Consensus         8 ~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~~~   81 (299)
T d1nr0a2           8 RYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTG---ISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVV   81 (299)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC---CEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEE
T ss_pred             cCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCC---cEEEEEcCCCCCcEEEEEeeccce--eecccceeeEEEe
Confidence            34899999999999998 69999999999999999876   444544 46899999999999986  5667779999999


Q ss_pred             EcCCCce---eEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEE
Q 021121          135 TVDRPTS---VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       135 d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      +......   ......+...+.+++|+|+ +.+++++ .++.+++|+...  .....  ....+.+++|+| ++++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~-~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g  154 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAA-CYKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVG  154 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEE-ESSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEE
T ss_pred             ccCCccccccccccccccccccccccccc-ccccccc-cccccccccccc--ccccc--cccccccccccc-cccccccc
Confidence            9865422   2223346678999999998 6666555 467899998542  22222  344578899999 99999999


Q ss_pred             ecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--eeeeecccceeEeEEEE
Q 021121          212 SVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--VGRYDHHTEFAVGVDMS  289 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~  289 (317)
                      +.|+.|++||+++.+........|...|++++|+|+++ +|++++.|+.|++||+.++...  ...+..|...|++++|+
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999886643445567899999999999998 7999999999999999876532  34566789999999999


Q ss_pred             eccCCeEEEeecCCcEEEEecCCCC
Q 021121          290 VLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       290 ~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |+ +.+|++|+.||.|++||+....
T Consensus       234 ~~-~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         234 PD-NVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             TT-SSEEEEEETTSCEEEEETTCTT
T ss_pred             cc-ccceEEEcCCCEEEEEECCCCC
Confidence            98 8899999999999999998653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-36  Score=244.24  Aligned_cols=248  Identities=15%  Similarity=0.159  Sum_probs=198.4

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee-----eeecCCCCeeEEEecCCCCCeEEEEEc
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL-----VAFDTADGVYDLAWSESHDSLLIAAVA   81 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~   81 (317)
                      ...|++++|+|..++.++++++.      ||+|+|||+..........     ....+..+|.+++|++++. ++++++.
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~  135 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDE------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGE  135 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEET------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEEC
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeC------CCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC-ccceeec
Confidence            46799999999777888888876      9999999997554221111     1224778899999999984 6666553


Q ss_pred             --CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee---ccccceEEEE
Q 021121           82 --DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK---EHAYCVYNAT  156 (317)
Q Consensus        82 --dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~  156 (317)
                        ++.+.+|+.+.+   ..+..+.+|...|.+++|+|+++.++++++.|+.+++||+...+....+.   .|...|.+++
T Consensus       136 ~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         136 GRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             CSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             cccceEEEEeeccc---ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence              678999998765   67778889999999999999988678899999999999998877665553   4677899999


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEec---CCCCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN---KYDDCLIASASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      |+|+.+.++++++.||.|++||+++++.+..+..|..++..+.|+   | ++++|++++.|+.|++||+++++ ++..+.
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~  290 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK-CVQKWT  290 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCC-EEEEEE
Confidence            999878999999999999999999999999998888877665555   5 78899999999999999999865 466665


Q ss_pred             cCCCc--eeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          234 GHGYA--VRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       234 ~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      .|...  +..+++.+.+..+|++++.||.|++||+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            55443  4444444433336899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=237.85  Aligned_cols=277  Identities=19%  Similarity=0.305  Sum_probs=210.0

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+ ++++  ++.++++++.      ||.|+|||+.+.+. ..  ....|...|.+++|+|+   +|++|+.|+.+
T Consensus        15 H~~~V~s-~~~~--~g~~l~sgs~------Dg~i~vWd~~~~~~-~~--~~~~h~~~V~~v~~~~~---~l~s~s~D~~~   79 (342)
T d2ovrb2          15 HDDHVIT-CLQF--CGNRIVSGSD------DNTLKVWSAVTGKC-LR--TLVGHTGGVWSSQMRDN---IIISGSTDRTL   79 (342)
T ss_dssp             STTSCEE-EEEE--ETTEEEEEET------TSCEEEEETTTCCE-EE--ECCCCSSCEEEEEEETT---EEEEEETTSCE
T ss_pred             cCCceEE-EEEE--CCCEEEEEeC------CCeEEEEECCCCCE-EE--EEeCCCCCEEEEEeCCC---ccccceecccc
Confidence            6777765 3666  3455666665      99999999987652 22  22368899999999863   89999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcce--------------------------------------EEEEEecCCCCEEEEEcC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREV--------------------------------------HSADYNPTRRDSFITSSW  127 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~~~~l~~~~~  127 (317)
                      ++|+.....   .......+...+                                      ......+... .+++++.
T Consensus        80 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  155 (342)
T d2ovrb2          80 KVWNAETGE---CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAY  155 (342)
T ss_dssp             EEEETTTTE---EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEET
T ss_pred             ccccccccc---ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccc-eeeeecC
Confidence            999976541   111111011000                                      1112223333 6788888


Q ss_pred             CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcE
Q 021121          128 DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL  207 (317)
Q Consensus       128 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  207 (317)
                      |+.|++||....+.+..+..|...+..+.+  + +..+++++.||.|++||++.++.+..+..|...+.++.+++   ++
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~  229 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI  229 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TE
T ss_pred             CCeEEEeecccceeeEEEcCcccccccccC--C-CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CE
Confidence            999999999988888888888877776655  4 67899999999999999999999999999999999888765   58


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEEec---CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee-----ecc
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVLNG---HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY-----DHH  279 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~  279 (317)
                      +++++.|+.|++||....+. ...+..   |...+.++.+++  . ++++|+.||.|++||+++++. +..+     .+|
T Consensus       230 l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~~tg~~-i~~~~~~~~~~~  304 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGS  304 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE-EEEEEECTTGGG
T ss_pred             EEEEcCCCEEEEEecccccc-cccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEECCCCCE-EEEEecccCCCC
Confidence            99999999999999988664 444443   556677777754  4 799999999999999999873 3333     357


Q ss_pred             cceeEeEEEEeccCCeEEEeecCCc----EEEEecCCC
Q 021121          280 TEFAVGVDMSVLVEGLLASTGWDEL----VYVWQQGMD  313 (317)
Q Consensus       280 ~~~v~~~~~~~~~~~~l~s~~~dg~----i~~w~~~~~  313 (317)
                      ...|++++|+|+ +.+|++|+.||+    |++||++.+
T Consensus       305 ~~~v~~v~~s~~-~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         305 GGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             TCEEEEEEECSS-EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCEEEEEECCC-CCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            788999999998 789999999885    999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-36  Score=239.63  Aligned_cols=264  Identities=12%  Similarity=0.149  Sum_probs=210.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |..+|++++|+|      +++++.      ||.|++||+...        ...|...|.+++++++.  .+++++.|+++
T Consensus        12 H~~~I~~l~~s~------l~sgs~------Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~--~~~s~s~D~~v   69 (287)
T d1pgua2          12 HNKGITALTVNP------LISGSY------DGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ--EYSSISWDDTL   69 (287)
T ss_dssp             CSSCEEEEETTT------TEEEET------TSCEEETTTTEE--------ECCCCSCEEEEECCSTT--CCEEEETTTEE
T ss_pred             CCCceEEEEECc------EEEEeC------CCeEEEEECCCC--------CCCCCCCEEEEEecCCC--eEEEEeecccc
Confidence            889999999988      344554      999999997642        13688899999999764  68899999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      ++|++...          .....+.++.+++++. .+++ +.++.+.+|+..+++.+..+..+ ..+.  +++++ +..+
T Consensus        70 ~~w~~~~~----------~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~~  133 (287)
T d1pgua2          70 KVNGITKH----------EFGSQPKVASANNDGF-TAVL-TNDDDLLILQSFTGDIIKSVRLN-SPGS--AVSLS-QNYV  133 (287)
T ss_dssp             EETTEEEE----------ECSSCEEEEEECSSSE-EEEE-ETTSEEEEEETTTCCEEEEEECS-SCEE--EEEEC-SSEE
T ss_pred             cccccccc----------ccccceeeeeeccCCc-eEEE-eecccceeeeccceeeeeecccc-ceee--eeecc-Ccce
Confidence            99997532          1234567788888875 4444 55678999999999888877643 3343  45666 5666


Q ss_pred             EEEeCC-CeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEE
Q 021121          166 CSASGD-CTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVK  243 (317)
Q Consensus       166 ~~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~  243 (317)
                      ++++.+ +.+++|++...+....+. .+..++.+++|+| ++.+|++|+.||.|++||+.+.+.....+..|...|.+++
T Consensus       134 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         134 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred             eeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeecccccccccccccccccceee
Confidence            666665 579999987665544443 4677899999999 9999999999999999999987654455678999999999


Q ss_pred             ecCCCC---------eeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEec
Q 021121          244 FSPHRR---------NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       244 ~~~~~~---------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~  310 (317)
                      |+|.+.         .+|++|+.|+.|++||+++....+..+.+|...|++++|+|+  ..|++++.||.|++|++
T Consensus       213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~--~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWNV  286 (287)
T ss_dssp             ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET--TEEEEEETTSCEEEEEE
T ss_pred             ecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC--CEEEEEECCCeEEEEEE
Confidence            998542         379999999999999998877677888899999999999996  46899999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-36  Score=242.47  Aligned_cols=290  Identities=11%  Similarity=0.093  Sum_probs=214.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |.+.|++|+|+|  ++.++++++.      ||.|+|||+..............|..+|.+++|+|+++.+|++|+.||.|
T Consensus        10 h~d~I~~l~fsp--~~~~L~s~s~------Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_          10 PKDYISDIKIIP--SKSLLLITSW------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCEEEEEEEG--GGTEEEEEET------TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CCCCEEEEEEeC--CCCEEEEEEC------CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            778899999999  5666666665      99999999987665455555567999999999999876799999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCc-ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee----c--cccceEEEEEe
Q 021121           86 KIYDTALPPTANPIRSLHEHTR-EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK----E--HAYCVYNATWN  158 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~--~~~~v~~~~~~  158 (317)
                      ++|++...   ........+.. ......+.++.. .+++++.++.+++||++++.......    .  .........+.
T Consensus        82 ~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          82 LKVDLIGS---PSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             EEECSSSS---SSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             eeeecccc---cccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            99998765   34444433333 334444555555 89999999999999987654333221    1  12234455666


Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCCceee---eccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCcc-----EE
Q 021121          159 PRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-----IA  230 (317)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----~~  230 (317)
                      +. ...+++++.|+.|++||++..+....   .........+..+.+.++..+++++.||.+.+|+.......     ..
T Consensus       158 ~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         158 TN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             EC-SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cc-CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            76 78899999999999999987754432   23344556677777768889999999999999998653211     01


Q ss_pred             ---------EEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          231 ---------VLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       231 ---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                               ....|...+++++|+|+++ +|++|+.||.|++||+++++.+ ..+..+ ..+..++|+|+ +++|++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l-~~~~~~-~~~~~~~~s~~-~~~l~~a~s  312 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKI-KNFAKF-NEDSVVKIACS-DNILCLATS  312 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEE-EECCCC-SSSEEEEEEEC-SSEEEEEEE
T ss_pred             eeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCcEE-EEecCC-CCCEEEEEEeC-CCEEEEEEc
Confidence                     1234667899999999998 7999999999999999988744 444432 23445778888 788999888


Q ss_pred             CCcEEEEecCC
Q 021121          302 DELVYVWQQGM  312 (317)
Q Consensus       302 dg~i~~w~~~~  312 (317)
                      |+.+++|....
T Consensus       313 dd~~~~~~~~~  323 (342)
T d1yfqa_         313 DDTFKTNAAID  323 (342)
T ss_dssp             CTHHHHCSSSC
T ss_pred             CCcEEEeeeeC
Confidence            88888887644

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-35  Score=244.00  Aligned_cols=289  Identities=12%  Similarity=0.158  Sum_probs=207.1

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCc---ceeeeeecCCCCeeEEE------ecCCCCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPA---LTELVAFDTADGVYDLA------WSESHDSLL   76 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~v~~~~------~~~~~~~~l   76 (317)
                      |...|+++++++   +.++ +++.      |+.|+|||.......   ........+...+..+.      .......++
T Consensus        13 H~~~I~~v~~~~---~~l~-S~S~------D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_          13 HDADIFSVSACN---SFTV-SCSG------DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             SSSCEEEEEECS---SEEE-EEET------TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             ccCccEEEEEeC---CEEE-EEEC------CCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            888999999877   4444 4443      999999997654421   12222333444433322      222222478


Q ss_pred             EEEEcCCeEEEEEeCCCCCCCCcee-------eccCCcceEEEEEecCCC----CEEEEEcCCCEEEEEEcCCCc-----
Q 021121           77 IAAVADGSVKIYDTALPPTANPIRS-------LHEHTREVHSADYNPTRR----DSFITSSWDDTVKLWTVDRPT-----  140 (317)
Q Consensus        77 ~~~~~dg~i~v~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~v~iwd~~~~~-----  140 (317)
                      ++++.||.|++|++...........       ...+...+..++|.++..    .++++++.||.+++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            8999999999999876533222211       123556788888877642    378999999999999985321     


Q ss_pred             ------ee-------EEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee------ccCccceEEEEec
Q 021121          141 ------SV-------RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII------PAHEFEILACDWN  201 (317)
Q Consensus       141 ------~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~i~~~  201 (317)
                            ..       .....+...+.+++|+|+ + ++++|+.||.|++||+++++++..+      .+|..+|++++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                  00       011234456889999997 4 8899999999999999988766543      4688899999999


Q ss_pred             CCCCcEEEEEecCCc---EEEEEccCCCccEEEE-------------ecCCCceeEEEecCCCCeeEEeeecCCeEEEEe
Q 021121          202 KYDDCLIASASVDKS---IKIWDVRNYRVPIAVL-------------NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD  265 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd  265 (317)
                      | ++++|++|+.|++   |++||+++++. +..+             .+|...|++++|+|+++ +|++++.|++|++||
T Consensus       241 p-dg~~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         241 P-QGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWD  317 (393)
T ss_dssp             S-STTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEE
T ss_pred             c-ccceeeeecCCCCcceeeeccccccee-eeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEE
Confidence            9 9999999999874   99999987653 3333             47999999999999998 799999999999999


Q ss_pred             cccccceeeeeeccccee---------------------EeEEEEecc---------CCeEEEeecCCcEEEEec
Q 021121          266 FMVEDALVGRYDHHTEFA---------------------VGVDMSVLV---------EGLLASTGWDELVYVWQQ  310 (317)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~---------~~~l~s~~~dg~i~~w~~  310 (317)
                      +++++ ++..+.+|...|                     .++.|.+.+         .+.|++++.|+.|++|+-
T Consensus       318 ~~~g~-~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         318 VKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             TTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCCCC-EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            99986 667888886544                     345554431         124778888888888863

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-34  Score=231.25  Aligned_cols=247  Identities=21%  Similarity=0.322  Sum_probs=212.0

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.+.|++++|+|++ .+|++|+.||.|++||+.++   +.+..+..|..+|.+++|+|++. ++++++.|+.+.+|+.
T Consensus        52 ~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYNL  126 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTT---EEEEEEECSCSCEEEEEECTTSS-EEEEEETTCCEEEEES
T ss_pred             CCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccc---eeEEEEecccccEEeeEeeccce-eeeeecccceeecccc
Confidence            3799999999999998 69999999999999999876   77788889999999999999998 9999999999999998


Q ss_pred             CCC----ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe
Q 021121          137 DRP----TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       137 ~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      ...    .....+..|...........  ...+.....+.....++............+...+....+.+ ...++++++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  203 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGA  203 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             cccccccccceeccccccccccccccc--ccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEee
Confidence            664    34445666776666655554  56777888999999999888777777777888899999998 899999999


Q ss_pred             cCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccccee-eeeecccceeEeEEEEec
Q 021121          213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV-GRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       213 ~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~  291 (317)
                      .|+.|++||+++.+ ++..+.+|...|++++|+|+++ +|++|+.|+.|++||++..+... .....+...|.+++|+|+
T Consensus       204 ~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         204 CDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             TTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             cCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence            99999999999866 4788889999999999999998 79999999999999998876432 223456678999999998


Q ss_pred             cCCeEEEeecCCcEEEEecCCCC
Q 021121          292 VEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       292 ~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                       +.+|++|+.||.|++||+....
T Consensus       282 -~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         282 -GRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             -SCEEEEEETTSCEEEEETTTCC
T ss_pred             -CCEEEEEECCCEEEEEECCCCc
Confidence             8899999999999999987643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=221.27  Aligned_cols=269  Identities=20%  Similarity=0.375  Sum_probs=208.7

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      +...|+|++|    ++.++++++.      ||.|+|||+++.+. ...  ...|...|++++|+  + ++|++|+.|+.|
T Consensus        14 ~~~~V~c~~~----d~~~l~sgs~------Dg~i~vWd~~~~~~-~~~--l~~H~~~V~~v~~~--~-~~l~s~s~D~~i   77 (293)
T d1p22a2          14 TSKGVYCLQY----DDQKIVSGLR------DNTIKIWDKNTLEC-KRI--LTGHTGSVLCLQYD--E-RVIITGSSDSTV   77 (293)
T ss_dssp             SCCCEEEEEC----CSSEEEEEES------SSCEEEEESSSCCE-EEE--ECCCSSCEEEEECC--S-SEEEEEETTSCE
T ss_pred             CCCCEEEEEE----cCCEEEEEeC------CCeEEEEECCCCcE-EEE--EecCCCCEeeeecc--c-ceeecccccccc
Confidence            4567877654    3455666665      99999999987652 222  23689999999985  3 599999999999


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCce---eEEeeccccceEEEEEecCCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS---VRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ++|++..+   ........+....  ..+.+... .++++..++.+.+|+..+...   ...+..|...+..+.+.   .
T Consensus        78 ~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~  148 (293)
T d1p22a2          78 RVWDVNTG---EMLNTLIHHCEAV--LHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---D  148 (293)
T ss_dssp             EEEESSSC---CEEEEECCCCSCE--EEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---T
T ss_pred             cccccccc---ccccccccccccc--cccccccc-ceeecccccceeEeeccccccccccccccccccccccceec---c
Confidence            99999865   3333333333333  23444444 789999999999999987653   33455677888888876   4


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEE
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV  242 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~  242 (317)
                      ..+++++.|+.+++||+++++.+..+.++...+..+.+++   ..+++++.|+.|++||+++.. .+....+|...+..+
T Consensus       149 ~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~  224 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCI  224 (293)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEE
T ss_pred             cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce-eeeeecccceeeeec
Confidence            5788999999999999999999999998888888887754   589999999999999999866 477778888877654


Q ss_pred             EecCCCCeeEEeeecCCeEEEEeccccc--------ceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          243 KFSPHRRNLLASCSYDMTVCLWDFMVED--------ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       243 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                        ++++. +|++++.||.|++||+....        ..+..+.+|.+.|++++|+   +.+|+|+|.||+|++||
T Consensus       225 --~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 --RFDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --ECCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred             --cccce-EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence              45566 79999999999999986542        3467788999999999985   56899999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-33  Score=227.67  Aligned_cols=241  Identities=20%  Similarity=0.325  Sum_probs=182.2

Q ss_pred             eecCCCCe-eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           56 AFDTADGV-YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        56 ~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ..+|...| +|++|  ++ ++|++|+.||+|++||+.++   +.+..+.+|.++|.+++|+|++  +|++|+.||.|++|
T Consensus         8 L~GH~~~vitc~~~--~~-~~l~tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw   79 (355)
T d1nexb2           8 LRGHMTSVITCLQF--ED-NYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVW   79 (355)
T ss_dssp             EECCSSSCEEEEEE--ET-TEEEEEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEE
T ss_pred             ECCcCCCcEEEEEE--CC-CEEEEEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccc
Confidence            34787775 66666  45 59999999999999999866   7888899999999999999864  79999999999999


Q ss_pred             EcCCCceeEEeeccc--cceEEEEEecCCCCeEEEEeCCCeEEEEeCC--------------------------------
Q 021121          135 TVDRPTSVRTFKEHA--YCVYNATWNPRHSDVFCSASGDCTLRIWDVR--------------------------------  180 (317)
Q Consensus       135 d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--------------------------------  180 (317)
                      ++...+.........  .......+.++ +..+++++.|+.|++||++                                
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             cccccccccccccccccccccccccccc-cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            998876655443222  22333444444 4555556666666666554                                


Q ss_pred             -------------------------------CCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccE
Q 021121          181 -------------------------------EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPI  229 (317)
Q Consensus       181 -------------------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  229 (317)
                                                     +++.+.....+...+.++.++| .+..+++++.|+.|++||.+++. .+
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~-~~  236 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGE-LM  236 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCC-EE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccc-cc
Confidence                                           3333334445566678888999 89999999999999999999876 47


Q ss_pred             EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEe
Q 021121          230 AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ  309 (317)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~  309 (317)
                      ..+.+|...|.++++++  + +|++++.||.|++||+++..   ..+..|...+..+.+.+.++.++++| .||.|++||
T Consensus       237 ~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             EEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             ccccccccccccccccc--c-eeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            88899999999999975  3 79999999999999998765   34455666677776554435555555 599999999


Q ss_pred             cCCCC
Q 021121          310 QGMDP  314 (317)
Q Consensus       310 ~~~~~  314 (317)
                      +.+++
T Consensus       310 ~~tg~  314 (355)
T d1nexb2         310 LRSGK  314 (355)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            98754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.6e-32  Score=224.86  Aligned_cols=277  Identities=10%  Similarity=0.035  Sum_probs=207.6

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-C-eEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-G-SVKI   87 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-~i~v   87 (317)
                      .++-.|||. ++++++..+       +|.|++||+..+.     .....|...|.+++|+|||+ .|++++.+ + .|++
T Consensus         5 ~~~~~fSP~-dG~~~a~~~-------~g~v~v~d~~~~~-----~~~~~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           5 KFAEDFSPL-DGDLIAFVS-------RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGDTK-VAFIHGTREGDFLGI   70 (360)
T ss_dssp             GGEEEEEEC-GGGCEEEEE-------TTEEEEECTTSSB-----EEECSCCSCEEEEEECSSSE-EEEEEEETTEEEEEE
T ss_pred             hhcccccCC-CCCEEEEEE-------CCeEEEEECCCCc-----EEEccCCCCEEEEEECCCCC-EEEEEEcCCCCEEEE
Confidence            345779994 356666655       7899999997653     22346889999999999995 66655544 3 7999


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCS  167 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (317)
                      ||.+.+    ....+..|...|.+++|+|+++ +|++++.++.+++|++.+++....+..+...+.+++|+|+ +++|+.
T Consensus        71 ~d~~~~----~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~la~  144 (360)
T d1k32a3          71 YDYRTG----KAEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN-SRFIAY  144 (360)
T ss_dssp             EETTTC----CEEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT-SCEEEE
T ss_pred             EECCCC----cEEEeeCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccc-eeeeee
Confidence            998764    4556778999999999999998 9999999999999999999999999889999999999999 777775


Q ss_pred             E----------eCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCc------cEEE
Q 021121          168 A----------SGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV------PIAV  231 (317)
Q Consensus       168 ~----------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~  231 (317)
                      +          ..++.+++||+.+++... +..+...+..++|+| +++.|++++.++.+.+||......      ....
T Consensus       145 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~  222 (360)
T d1k32a3         145 GFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV  222 (360)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred             eccccccceeeccccceeeeccccCceee-ecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEE
Confidence            4          345579999998765544 444677788999999 999999999999999998653211      0011


Q ss_pred             EecC------------------------------------CCceeEEEecC----------CCC--eeEEeeecCCeEEE
Q 021121          232 LNGH------------------------------------GYAVRKVKFSP----------HRR--NLLASCSYDMTVCL  263 (317)
Q Consensus       232 ~~~~------------------------------------~~~v~~~~~~~----------~~~--~~l~~~~~d~~i~v  263 (317)
                      ...+                                    ......+...+          .+.  .++++++.++.|++
T Consensus       223 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred             EecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEE
Confidence            1101                                    11112222222          221  13456667889999


Q ss_pred             EecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          264 WDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       264 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ||+.+++ .    ..|.+.|.+++|+|| +++|++++.||.|++|+++.++
T Consensus       303 ~d~~~~~-~----~~~~~~v~~~~~SpD-G~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         303 YDVKTRK-V----TEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EETTTCC-E----EEEEEEEEEEEECTT-SCEEEEEETTSCEEEEESSCTT
T ss_pred             EECCCCe-E----EEecCCcCEEEECCC-CCEEEEEECCCeEEEEECCCCC
Confidence            9998765 2    234567999999999 8999999999999999998754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-33  Score=225.84  Aligned_cols=253  Identities=13%  Similarity=0.128  Sum_probs=192.3

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      .|.+.|++|+|+|++ .+|++|+.||+|+|||+........+....+|..+|.+++|+|++..+|++|+.||.|++|++.
T Consensus         9 ~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_           9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            688899999999998 5999999999999999986533333444457999999999999876689999999999999999


Q ss_pred             CCceeEEeeccccceE-EEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec----c--CccceEEEEecCCCCcEEEE
Q 021121          138 RPTSVRTFKEHAYCVY-NATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP----A--HEFEILACDWNKYDDCLIAS  210 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~--~~~~v~~i~~~~~~~~~l~~  210 (317)
                      ..........+..... ...+.++ ...+++++.++.+++||++.........    .  .........+.+ .+..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  165 (342)
T d1yfqa_          88 GSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIV  165 (342)
T ss_dssp             SSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEE
T ss_pred             cccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceee
Confidence            8877776665544443 4444444 8899999999999999997654433221    1  122334556666 7889999


Q ss_pred             EecCCcEEEEEccCCCcc--EEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce--------------ee
Q 021121          211 ASVDKSIKIWDVRNYRVP--IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--------------VG  274 (317)
Q Consensus       211 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--------------~~  274 (317)
                      ++.|+.|++||++.....  ......+...+.+..+.+.....+++++.||.+.+|+.......              ..
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence            999999999999876532  22334455566677776655557999999999999997654311              11


Q ss_pred             eeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          275 RYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       275 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ....|...+++++|+|+ +.+|+||+.||.|++||+....
T Consensus       246 ~~~~~~~~v~~l~~sp~-~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             TCCSSCCCEEEEEECTT-TCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCcccccceeEEecCC-ccEEEEECCCCEEEEEECCCCc
Confidence            22356678999999999 7899999999999999998653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=216.61  Aligned_cols=238  Identities=20%  Similarity=0.334  Sum_probs=185.0

Q ss_pred             ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           57 FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        57 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+|.+.|.+ +++++| ++|++|+.||+|+|||+.++   +++..+.+|...|.+++|+|+   +|++++.|+.+++|+.
T Consensus        13 ~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             ECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEET
T ss_pred             CCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCCC---CEEEEEeCCCCCEEEEEeCCC---ccccceeccccccccc
Confidence            379988865 355666 59999999999999999876   778889999999999999864   8999999999999998


Q ss_pred             CCCceeEEeeccccceE--------------------------------------EEEEecCCCCeEEEEeCCCeEEEEe
Q 021121          137 DRPTSVRTFKEHAYCVY--------------------------------------NATWNPRHSDVFCSASGDCTLRIWD  178 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~~~~~~l~~~~~dg~i~i~d  178 (317)
                      ...........+...+.                                      .....+. ...+++++.|+.+++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEEEEE
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEEEee
Confidence            76543332221111111                                      1122223 55778889999999999


Q ss_pred             CCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC
Q 021121          179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD  258 (317)
Q Consensus       179 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  258 (317)
                      .+..+.+..+..|...+..+.+   ++..+++++.||.|++||++..+ ++..+..|...+.++.+++  + +|++++.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~s~s~d  236 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKD--N-ILVSGNAD  236 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEET--T-EEEEEETT
T ss_pred             cccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccce-eeeEecccccceeEEecCC--C-EEEEEcCC
Confidence            9988888888888776666554   56789999999999999999866 4788889999999888875  3 79999999


Q ss_pred             CeEEEEecccccceeeeee---cccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          259 MTVCLWDFMVEDALVGRYD---HHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       259 ~~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +.|++||+...+. ...+.   .|...+.++.++   ++++++|+.||.|++||+.+.+
T Consensus       237 ~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         237 STVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             SCEEEEETTTCCE-EEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEecccccc-cccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCC
Confidence            9999999988763 33333   345566666654   5799999999999999998653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=227.97  Aligned_cols=248  Identities=17%  Similarity=0.297  Sum_probs=180.3

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc---eeeccCCcceEEEEE------ecCCCCEEEEEcCC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI---RSLHEHTREVHSADY------NPTRRDSFITSSWD  128 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~---~~~~~~~~~v~~~~~------~~~~~~~l~~~~~d  128 (317)
                      .|...|.++++++   .++++++.|++|++||....+...+.   .....|...+..+..      +.....++++++.|
T Consensus        12 ~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             CSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             cccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            7999999999874   48999999999999998765322211   122234443332222      21122267899999


Q ss_pred             CEEEEEEcCCCceeEEe----------eccccceEEEEEecCC----CCeEEEEeCCCeEEEEeCCCCCc----------
Q 021121          129 DTVKLWTVDRPTSVRTF----------KEHAYCVYNATWNPRH----SDVFCSASGDCTLRIWDVREMGS----------  184 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~----------  184 (317)
                      |.|++|++........+          ..+...+..++|.++.    ..++++++.||.+++||+.....          
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  168 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  168 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence            99999998654322211          1244567888888763    35788999999999999853211          


Q ss_pred             --------eeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEE------EEecCCCceeEEEecCCCCe
Q 021121          185 --------TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIA------VLNGHGYAVRKVKFSPHRRN  250 (317)
Q Consensus       185 --------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~  250 (317)
                              ......+...+.+++|+| ++ +|++|+.|+.|++||+++.+. +.      .+.+|..+|++++|+|+++ 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~~h~~~V~~l~~spdg~-  244 (393)
T d1sq9a_         169 PTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGS-  244 (393)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTT-
T ss_pred             cceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeeccccc-ccccccccccccccceEEEcccccccc-
Confidence                    011123445688999999 66 889999999999999988653 33      3456889999999999998 


Q ss_pred             eEEeeecCC---eEEEEecccccce------------eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          251 LLASCSYDM---TVCLWDFMVEDAL------------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       251 ~l~~~~~d~---~i~vwd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +|++|+.|+   .|++||+++++..            ...+.+|...|++++|+|+ +++|+|++.|++|++||+.+.
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd-~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTT
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC-CCeeEEECCCCEEEEEECCCC
Confidence            799999887   4999999887522            1223479999999999999 889999999999999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-29  Score=197.67  Aligned_cols=232  Identities=26%  Similarity=0.449  Sum_probs=188.0

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcC
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD  137 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  137 (317)
                      ++...|+|++|  ++ ++|++|+.||+|+|||+.+.   +.+..+.+|..+|.+++|+  ++ +|++|+.|+.|++|++.
T Consensus        13 ~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~~--~~-~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          13 ETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQYD--ER-VIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             SSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEECC--SS-EEEEEETTSCEEEEESS
T ss_pred             CCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCEeeeecc--cc-eeecccccccccccccc
Confidence            57788998776  55 69999999999999999876   7888899999999999884  44 99999999999999999


Q ss_pred             CCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce---eeeccCccceEEEEecCCCCcEEEEEecC
Q 021121          138 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST---MIIPAHEFEILACDWNKYDDCLIASASVD  214 (317)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  214 (317)
                      .+........+.....  .+.+. ...++++..++.+.+||.......   ..+..|...+..+.+.+   ..+++++.|
T Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d  157 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVL--HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGD  157 (293)
T ss_dssp             SCCEEEEECCCCSCEE--EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETT
T ss_pred             cccccccccccccccc--ccccc-ccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCC
Confidence            9887777665444333  33444 667889999999999999876543   34456777787777654   568888999


Q ss_pred             CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC
Q 021121          215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  294 (317)
                      +.|++||.++.+ ++..+.++...+..+.+++  . ++++++.||.|++||+++.+ .+.....|...+..+  +++ +.
T Consensus       158 ~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~--~~~-~~  229 (293)
T d1p22a2         158 RTIKVWNTSTCE-FVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCI--RFD-NK  229 (293)
T ss_dssp             SEEEEEETTTCC-EEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEE--ECC-SS
T ss_pred             CceeeecCCCCc-EEEEEcccccccccccCCC--C-eEEEecCCCEEEEEecccce-eeeeecccceeeeec--ccc-ce
Confidence            999999999876 4778888888888888764  4 69999999999999999876 556777788777654  455 67


Q ss_pred             eEEEeecCCcEEEEecCC
Q 021121          295 LLASTGWDELVYVWQQGM  312 (317)
Q Consensus       295 ~l~s~~~dg~i~~w~~~~  312 (317)
                      +|++++.||.|++||+..
T Consensus       230 ~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             EEEEEETTSCEEEEEHHH
T ss_pred             EEEEEcCCCEEEEEECCC
Confidence            999999999999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-29  Score=197.18  Aligned_cols=230  Identities=13%  Similarity=0.130  Sum_probs=178.4

Q ss_pred             cCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            6 TPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      |...|.+++|++  +..++.++.       |+.+++|++...          .....+.++++++++  .++..+.++.+
T Consensus        45 h~~~V~~~~~~~--~~~~~s~s~-------D~~v~~w~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~  103 (287)
T d1pgua2          45 HSNLIVSLDNSK--AQEYSSISW-------DDTLKVNGITKH----------EFGSQPKVASANNDG--FTAVLTNDDDL  103 (287)
T ss_dssp             CCSCEEEEECCS--TTCCEEEET-------TTEEEETTEEEE----------ECSSCEEEEEECSSS--EEEEEETTSEE
T ss_pred             CCCCEEEEEecC--CCeEEEEee-------cccccccccccc----------ccccceeeeeeccCC--ceEEEeecccc
Confidence            667899999998  566655544       889999987532          233457788899876  44445567779


Q ss_pred             EEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC-CEEEEEEcCCCceeEEee-ccccceEEEEEecCCCC
Q 021121           86 KIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD-DTVKLWTVDRPTSVRTFK-EHAYCVYNATWNPRHSD  163 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  163 (317)
                      .+|+....   .....+.. ...+  .++++++. .+++++.+ +.+++|++...+....+. .+..++++++|+|+ +.
T Consensus       104 ~~~~~~~~---~~~~~~~~-~~~~--~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~  175 (287)
T d1pgua2         104 LILQSFTG---DIIKSVRL-NSPG--SAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS-ET  175 (287)
T ss_dssp             EEEETTTC---CEEEEEEC-SSCE--EEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT-SS
T ss_pred             eeeeccce---eeeeeccc-ccee--eeeeccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccC-cc
Confidence            99997765   44444443 3333  45666666 56666555 579999997766555544 46778999999999 89


Q ss_pred             eEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCC---------CCcEEEEEecCCcEEEEEccCCCccEEEEe
Q 021121          164 VFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKY---------DDCLIASASVDKSIKIWDVRNYRVPIAVLN  233 (317)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~---------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  233 (317)
                      +|++++.||.|++||+.+++... .+..|..+|.+++|+|.         ++.++++|+.|+.|++||+++....+..+.
T Consensus       176 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~  255 (287)
T d1pgua2         176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN  255 (287)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT
T ss_pred             ccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC
Confidence            99999999999999999876654 45678999999999872         456899999999999999988766678888


Q ss_pred             cCCCceeEEEecCCCCeeEEeeecCCeEEEEec
Q 021121          234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      +|...|++++|+|++  .|++++.|+.|++|++
T Consensus       256 ~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         256 AHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             CCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            999999999999986  3888999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=8.4e-29  Score=207.51  Aligned_cols=289  Identities=12%  Similarity=0.093  Sum_probs=196.0

Q ss_pred             EEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC
Q 021121           13 VKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL   92 (317)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~   92 (317)
                      ..++++..+.++++...      +|.|+|||+.+.+    .+..+.....+..++|+||| +++++++.|+.|++||+.+
T Consensus        24 ~~~~~d~~~~~~V~~~~------dg~v~vwD~~t~~----~~~~l~~g~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRD------AGQIALVDGDSKK----IVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             CCSCCCGGGEEEEEETT------TTEEEEEETTTCS----EEEEEECCSSEEEEEECTTS-CEEEEEETTSEEEEEETTS
T ss_pred             ccccCCCCeEEEEEEcC------CCEEEEEECCCCc----EEEEEeCCCCeeEEEECCCC-CEEEEEeCCCCEEEEEccC
Confidence            44556545667777765      9999999998865    33444455679999999999 5889999999999999987


Q ss_pred             CCCCC--CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce-----------EEEEEec
Q 021121           93 PPTAN--PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV-----------YNATWNP  159 (317)
Q Consensus        93 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~  159 (317)
                      .+...  .+....+|...+.+++|+|||+.+++++..++.+.+||..+++....+..+...+           ..+.+++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence            63211  1222335667777888999999445666789999999999998887776554433           4455555


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCcee-eeccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCC-----------
Q 021121          160 RHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYR-----------  226 (317)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~-----------  226 (317)
                      ++..++.+....+.+.+++........ ....+...+..+.++| ++++++++. .+..+.+++..+.+           
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  251 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC
T ss_pred             CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccCCcc
Confidence            533333333444555556555443322 2234566678889998 666555543 34445555543211           


Q ss_pred             ------------------------------------------ccEEEEecCCCceeEEEecCCCCeeEE-------eeec
Q 021121          227 ------------------------------------------VPIAVLNGHGYAVRKVKFSPHRRNLLA-------SCSY  257 (317)
Q Consensus       227 ------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~-------~~~~  257 (317)
                                                                .....+.+|...+..++|+|++++ |+       +++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~-l~v~~~~~~s~~~  330 (426)
T d1hzua2         252 HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARI  330 (426)
T ss_dssp             CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSE-EEECCTTCSSHHH
T ss_pred             cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCce-EEEeecCCCCccc
Confidence                                                      123456678888999999999995 66       4567


Q ss_pred             CCeEEEEecccccceeee--------eecccceeEeEEEEeccCCeEEEe----ecCCcEEEEecCCCC
Q 021121          258 DMTVCLWDFMVEDALVGR--------YDHHTEFAVGVDMSVLVEGLLAST----GWDELVYVWQQGMDP  314 (317)
Q Consensus       258 d~~i~vwd~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~~w~~~~~~  314 (317)
                      +++|+|||+.+++.....        +..|...|..++||||+..+++++    +.+|.|++||..+.+
T Consensus       331 ~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         331 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            899999999988743222        234566799999999943344553    368899999988753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.97  E-value=1.3e-26  Score=184.74  Aligned_cols=263  Identities=14%  Similarity=0.155  Sum_probs=200.0

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ++.|.+||+++.+    .+..+.....+..++|+|+|..++++++.++.|++||+.+.   +.+..+..+. .+..+.|+
T Consensus        11 ~~~v~v~D~~t~~----~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2          11 SDNISVIDVTSNK----VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             TTEEEEEETTTTE----EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEEC
T ss_pred             CCEEEEEECCCCe----EEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---ceeeeeeccc-cccccccc
Confidence            8899999998764    34444556678999999999645567778999999999876   6666666554 46889999


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI  195 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  195 (317)
                      +++...++++..++.+.+|+..+++....+..+ ..+.++.|+|++..+++++..++.+.+|+..+.+....+..+ ..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             cccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence            999867777888899999999999888887744 557899999995556667778899999999998887777644 457


Q ss_pred             EEEEecCCCCcEEEEEecC-CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeee--cCCeEEEEecccccce
Q 021121          196 LACDWNKYDDCLIASASVD-KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS--YDMTVCLWDFMVEDAL  272 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~  272 (317)
                      ..++++| ++..++++..+ +.+.+|+....+ ...... ....+..+++++++..+++++.  .++.|++||+.+++ +
T Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~  236 (301)
T d1l0qa2         161 KGIAVTP-DGTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-I  236 (301)
T ss_dssp             EEEEECT-TSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-E
T ss_pred             eEEEeec-cccceeeeccccccccccccccee-eeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCe-E
Confidence            8899999 77666666655 566677766543 344444 4456788999999996444432  34789999999886 4


Q ss_pred             eeeeecccceeEeEEEEeccCCe-EEEeecCCcEEEEecCCCC
Q 021121          273 VGRYDHHTEFAVGVDMSVLVEGL-LASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       273 ~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~i~~w~~~~~~  314 (317)
                      ...+..+ ..+.+++|+|+ +++ +++++.|+.|++||+.+..
T Consensus       237 ~~~~~~~-~~~~~va~spd-g~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         237 TARIPVG-PDPAGIAVTPD-GKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEECC-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEcCC-CCEEEEEEeCC-CCEEEEEECCCCeEEEEECCCCe
Confidence            4455443 45799999999 554 5788889999999997753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.9e-26  Score=188.27  Aligned_cols=244  Identities=9%  Similarity=0.060  Sum_probs=178.9

Q ss_pred             eecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC
Q 021121            4 FKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG   83 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   83 (317)
                      +.|...|.+++|+|  +++.++..+..    .+..|++||...+.    ......|...|.+++|+|++ ++|++++.++
T Consensus        39 ~~~~~~v~~~~~sp--Dg~~l~~~~~~----~g~~v~v~d~~~~~----~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~  107 (360)
T d1k32a3          39 VPEPLRIRYVRRGG--DTKVAFIHGTR----EGDFLGIYDYRTGK----AEKFEENLGNVFAMGVDRNG-KFAVVANDRF  107 (360)
T ss_dssp             CSCCSCEEEEEECS--SSEEEEEEEET----TEEEEEEEETTTCC----EEECCCCCCSEEEEEECTTS-SEEEEEETTS
T ss_pred             ccCCCCEEEEEECC--CCCEEEEEEcC----CCCEEEEEECCCCc----EEEeeCCCceEEeeeecccc-cccceecccc
Confidence            34788999999999  56655544431    02478999998765    22334788999999999998 6999999999


Q ss_pred             eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEE----------cCCCEEEEEEcCCCceeEEeeccccceE
Q 021121           84 SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS----------SWDDTVKLWTVDRPTSVRTFKEHAYCVY  153 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~v~iwd~~~~~~~~~~~~~~~~v~  153 (317)
                      .+++|++...   .....+..|...+.+++|+|+++ +|+.+          ..++.+++||+.+++... +..+...+.
T Consensus       108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~  182 (360)
T d1k32a3         108 EIMTVDLETG---KPTVIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDY  182 (360)
T ss_dssp             EEEEEETTTC---CEEEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEE
T ss_pred             cccccccccc---ceeeeeecccccccchhhcccee-eeeeeccccccceeeccccceeeeccccCceee-ecccccccc
Confidence            9999999866   56667778889999999999998 67643          345679999998876544 445677789


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCCCce-------eeecc------------------------------------
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREMGST-------MIIPA------------------------------------  190 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~------------------------------------  190 (317)
                      .++|+|+ ++.|++++.++.+.+||.......       ..+..                                    
T Consensus       183 ~~~~spd-g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         183 APAFDAD-SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             EEEECTT-SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             cccccCC-CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeeccc
Confidence            9999999 889999999999999986543211       00000                                    


Q ss_pred             CccceEEEEecCCCC-------------cEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec
Q 021121          191 HEFEILACDWNKYDD-------------CLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~-------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  257 (317)
                      .......+...+ ++             .++++++.++.|++||+.+.+  ...   |...|.+++|+|||+ .|++++.
T Consensus       262 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~---~~~~v~~~~~SpDG~-~l~~~~~  334 (360)
T d1k32a3         262 DPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--VTE---VKNNLTDLRLSADRK-TVMVRKD  334 (360)
T ss_dssp             CCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC--EEE---EEEEEEEEEECTTSC-EEEEEET
T ss_pred             CcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe--EEE---ecCCcCEEEECCCCC-EEEEEEC
Confidence            011112222222 11             234455668899999998754  333   334689999999999 6899999


Q ss_pred             CCeEEEEecccccc
Q 021121          258 DMTVCLWDFMVEDA  271 (317)
Q Consensus       258 d~~i~vwd~~~~~~  271 (317)
                      ||.|++||+.+++.
T Consensus       335 Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         335 DGKIYTFPLEKPED  348 (360)
T ss_dssp             TSCEEEEESSCTTS
T ss_pred             CCeEEEEECCCCCc
Confidence            99999999998874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=9.8e-24  Score=167.80  Aligned_cols=251  Identities=13%  Similarity=0.170  Sum_probs=187.3

Q ss_pred             eecCcceeEEEEecCCCCe-EEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC
Q 021121            4 FKTPFNGYSVKFSPFYESR-LAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~-~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      +.....+..++|+|  +++ ++++...      ++.|++||+.+..    .+..+.....+..++|++++..+++++..+
T Consensus        28 i~~g~~p~~va~sp--dG~~l~v~~~~------~~~i~v~d~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          28 IPVGSNPMGAVISP--DGTKVYVANAH------SNDVSIIDTATNN----VIATVPAGSSPQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             EECSSSEEEEEECT--TSSEEEEEEGG------GTEEEEEETTTTE----EEEEEECSSSEEEEEECTTSSEEEEEETTT
T ss_pred             EECCCCceEEEEeC--CCCEEEEEECC------CCEEEEEECCCCc----eeeeeecccccccccccccccccccccccc
Confidence            45566788999999  455 4455554      8899999998754    334444556789999999987677777788


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      +.+.+|+...+   +....+. +.....++.|+|++..+++++..++.+.+|+..+.+....+..+ ..+..+.++|++.
T Consensus        96 ~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  170 (301)
T d1l0qa2          96 STLSVIDTTSN---TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT  170 (301)
T ss_dssp             TEEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS
T ss_pred             ceeeecccccc---eeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeecccc
Confidence            89999998765   4455444 44567889999999866678888999999999999888887644 4588999999944


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccCCCccEEEEecCCCce
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      .++++...++.+.+|+....+...... ....+..+++++ ++..++.+..   ++.|++||..+.+. +..+.. ...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~-~~~~~~-~~~~  246 (301)
T d1l0qa2         171 KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPV-GPDP  246 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE-EEEEEC-CSSE
T ss_pred             ceeeecccccccccccccceeeeeccc-ccCCcceeeccc-cccccccccccceeeeeeeeecCCCeE-EEEEcC-CCCE
Confidence            444444455778888877766655555 345577899999 7776665543   46799999998764 555554 4467


Q ss_pred             eEEEecCCCCeeEEeeecCCeEEEEecccccceeeee
Q 021121          240 RKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  276 (317)
                      .+++|+|+|++++++++.++.|++||+.+++ ++..+
T Consensus       247 ~~va~spdg~~l~va~~~~~~i~v~D~~t~~-~~~~~  282 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTVSVIDTATNT-ITATM  282 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEECCCCe-EEEEE
Confidence            9999999999666788889999999999886 44444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.4e-25  Score=186.15  Aligned_cols=292  Identities=11%  Similarity=0.004  Sum_probs=191.3

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-eeee-ecCCCCeeEEEecCCCCCeEEEEE
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELVA-FDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      .++....+..++|||  ++++++.++.      ||.|++||+.+.+.... .+.. ..+.+.+.+..|+|||..++++++
T Consensus        57 ~~~~g~~~~~v~fSp--DG~~l~~~s~------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~  128 (432)
T d1qksa2          57 VLDTGYAVHISRLSA--SGRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY  128 (432)
T ss_dssp             EEECSSCEEEEEECT--TSCEEEEEET------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             EEeCCCCeeEEEECC--CCCEEEEEcC------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC
Confidence            345556799999999  6777777665      89999999987653221 2221 134455666778899965668889


Q ss_pred             cCCeEEEEEeCCCCCCCCceeec-----------cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-cc
Q 021121           81 ADGSVKIYDTALPPTANPIRSLH-----------EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-EH  148 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~  148 (317)
                      .++.|++||..+.   +.+..+.           .+......+.++|++..++++...++.|.+||..+.+...... .+
T Consensus       129 ~~~~v~i~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~  205 (432)
T d1qksa2         129 WPPQYVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA  205 (432)
T ss_dssp             ETTEEEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred             CCCeEEEEeCccc---cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence            9999999998876   3333322           2455677889999998667788889999999998877554333 34


Q ss_pred             ccceEEEEEecCCCCe-EEEEeCCCeEEEEeCCCCCceeeecc-----CccceEEEEecCCCCcEEEEEe-cCCcEEEEE
Q 021121          149 AYCVYNATWNPRHSDV-FCSASGDCTLRIWDVREMGSTMIIPA-----HEFEILACDWNKYDDCLIASAS-VDKSIKIWD  221 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d  221 (317)
                      ...+..++|+|+ +++ ++++..++.+.++|.++++....+..     +........+.. .+...++.. .++.+.+|+
T Consensus       206 g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~  283 (432)
T d1qksa2         206 ERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIG  283 (432)
T ss_dssp             CSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEE
T ss_pred             cCccccceECCC-CCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecccccCCceEEecc
Confidence            566899999999 565 44555567899999988766554431     222233333333 444444332 366777776


Q ss_pred             ccCCCc------cEEEEecC-------------------------CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          222 VRNYRV------PIAVLNGH-------------------------GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       222 ~~~~~~------~~~~~~~~-------------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ......      .......+                         .....++++ |+++ .+++++.|+.+++|++.+..
T Consensus       284 ~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~-~la~~s~d~~~k~w~~~~~~  361 (432)
T d1qksa2         284 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIK-AMTGDGSDPEFKTLPIAEWA  361 (432)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGG-GCCCSSSCCCEEEECHHHHH
T ss_pred             cccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eech-hhcccccCCceEeccccccc
Confidence            543221      11111111                         111223443 6776 58888888999999886654


Q ss_pred             ceeeeeecccceeEeEEEEeccCCeE-EEe----ecCCcEEEEecCCCC
Q 021121          271 ALVGRYDHHTEFAVGVDMSVLVEGLL-AST----GWDELVYVWQQGMDP  314 (317)
Q Consensus       271 ~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~----~~dg~i~~w~~~~~~  314 (317)
                      .    +..|...+..++|+|| ++++ ++.    ..+|.|.|||..+.+
T Consensus       362 ~----l~~~~~~v~~~~fS~D-G~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         362 G----ITEGQPRVVQGEFNKD-GTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             T----CCSSCCEEEEEEECTT-SSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             c----cCCCCCcEEEeEECCC-CCEEEEEEecCCCCCCcEEEEECCCce
Confidence            2    2356677999999999 5555 443    247889999987653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.3e-24  Score=175.58  Aligned_cols=263  Identities=9%  Similarity=0.027  Sum_probs=187.2

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccC-----CcceE
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEH-----TREVH  110 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-----~~~v~  110 (317)
                      |++|++||+.+.. ....+....+...+.+++|+|||..++++++.++.|.+||+.++   +.+..+..+     ...+.
T Consensus        10 d~~v~v~D~~s~~-~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~   85 (337)
T d1pbyb_          10 PDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             TTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTTEEEECTT
T ss_pred             CCEEEEEECCCCe-EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC---cEEEEEecCCCccccccee
Confidence            8999999998764 22233322345568899999998544567778999999999876   555544433     23455


Q ss_pred             EEEEecCCCCEEEEEc------------CCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEe
Q 021121          111 SADYNPTRRDSFITSS------------WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD  178 (317)
Q Consensus       111 ~~~~~~~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (317)
                      .++|+|+++ .++++.            .++.+.+||..+++....+.. ...+..++|+|+ +.++++++.  .+.+||
T Consensus        86 ~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~d-g~~l~~~~~--~~~~~d  160 (337)
T d1pbyb_          86 GAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD-GSKLYGLGR--DLHVMD  160 (337)
T ss_dssp             CEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT-SSCEEEESS--SEEEEE
T ss_pred             eEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCC-CCEEEEEcC--Ccceee
Confidence            789999998 666654            467899999999988888774 456889999999 777777764  467899


Q ss_pred             CCCCCceeeeccCccceEEEEecCC-----------------------CCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          179 VREMGSTMIIPAHEFEILACDWNKY-----------------------DDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       179 ~~~~~~~~~~~~~~~~v~~i~~~~~-----------------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      ..+++....+..+... ....+.|.                       .......+..++.+.+||..++.........+
T Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence            9888766665432211 11111110                       11111122334568999998877655566678


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ...+..+.++|++. +++.+  ++.|++||+.+++ .+..+ .+...+.+++|+|+ +++|++++.|+.|++||..+.+
T Consensus       240 ~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~~~~-~~~~~-~~~~~~~~~~~s~d-G~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         240 DVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKNA-SIKRV-PLPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEE--ESEEEEEETTTTE-EEEEE-ECSSCCCEEEECTT-SCEEEEESBSSEEEEEETTTCC
T ss_pred             CcceEEEEecccce-EEEEc--cccEEEEECCCCc-EEEEE-cCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCc
Confidence            88889999999998 45544  5899999999987 33444 34567899999999 7899999999999999998754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.4e-25  Score=184.69  Aligned_cols=265  Identities=12%  Similarity=0.122  Sum_probs=177.5

Q ss_pred             ceecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcce-eee-eecCCCCeeEEEecCCCCCeEEEEE
Q 021121            3 VFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALT-ELV-AFDTADGVYDLAWSESHDSLLIAAV   80 (317)
Q Consensus         3 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~l~~~~   80 (317)
                      +++....+..++|||  +++++++++.      ||.|++||+........ .+. ...|...+.+++|+|||..+++++.
T Consensus        57 ~l~~g~~~~~vafSP--DGk~l~~~~~------d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2          57 VIDTGYAVHISRMSA--SGRYLLVIGR------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             EEECCSSEEEEEECT--TSCEEEEEET------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             EEeCCCCeeEEEECC--CCCEEEEEeC------CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec
Confidence            455667799999999  6777777665      89999999987763221 111 1134455677888999965566677


Q ss_pred             cCCeEEEEEeCCCCCCCCceeeccC-----------CcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE-Eeecc
Q 021121           81 ADGSVKIYDTALPPTANPIRSLHEH-----------TREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR-TFKEH  148 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~  148 (317)
                      .++.+.+||....   ........|           ......+.+++++...+.+....+.+.+++........ ....+
T Consensus       129 ~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         129 WPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             ESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred             CCCeEEEEcCCcc---ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence            8999999998765   444444333           33445566666666444445555667666665554322 22346


Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCC----------------------------------------------
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM----------------------------------------------  182 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------------------------------------  182 (317)
                      ...+..+.|+|++..++++...+..+.+++..++                                              
T Consensus       206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~  285 (426)
T d1hzua2         206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  285 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred             CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccc
Confidence            6678889999984334444445555666665432                                              


Q ss_pred             --------CceeeeccCccceEEEEecCCCCcEEEE-------EecCCcEEEEEccCCCccEEEE--------ecCCCce
Q 021121          183 --------GSTMIIPAHEFEILACDWNKYDDCLIAS-------ASVDKSIKIWDVRNYRVPIAVL--------NGHGYAV  239 (317)
Q Consensus       183 --------~~~~~~~~~~~~v~~i~~~~~~~~~l~~-------~~~d~~i~v~d~~~~~~~~~~~--------~~~~~~v  239 (317)
                              +....+.+|...+..++++| ++++|++       +..+++|++||+++++......        ..|...|
T Consensus       286 ~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv  364 (426)
T d1hzua2         286 KNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV  364 (426)
T ss_dssp             TTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred             cccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE
Confidence                    22334456677789999999 8999884       4567899999999877533332        2455678


Q ss_pred             eEEEecCCCCeeEEee----ecCCeEEEEecccccceeeeeeccc
Q 021121          240 RKVKFSPHRRNLLASC----SYDMTVCLWDFMVEDALVGRYDHHT  280 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~~~~  280 (317)
                      ..++|+|+|+++++++    +.++.|+|||.++.+ +...+.++.
T Consensus       365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k-~~~~i~~~~  408 (426)
T d1hzua2         365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK-LKAVVKDPR  408 (426)
T ss_dssp             EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE-EEEEECCTT
T ss_pred             EEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe-EEEEECCCC
Confidence            8999999999765553    468899999999987 455565553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-23  Score=169.93  Aligned_cols=280  Identities=12%  Similarity=0.149  Sum_probs=190.2

Q ss_pred             eEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCcee
Q 021121           22 RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS  101 (317)
Q Consensus        22 ~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  101 (317)
                      .+.+++..      +++|++|+++... .+..+...++.+.+..|+|+|||+.+++++..++.|++|++...........
T Consensus         5 ~v~v~~~~------~~~I~v~~~~~~~-~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~   77 (333)
T d1ri6a_           5 TVYIASPE------SQQIHVWNLNHEG-ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA   77 (333)
T ss_dssp             EEEEEEGG------GTEEEEEEECTTS-CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCC------CCcEEEEEEcCCC-CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee
Confidence            34455654      8999999998654 3556666788899999999999953445555689999999986532222222


Q ss_pred             eccCCcceEEEEEecCCCCEEEEEc-CCCEEEEEEcCCCceeEEe--eccccceEEEEEecCCCCeEEEEe-CCCeEEEE
Q 021121          102 LHEHTREVHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTF--KEHAYCVYNATWNPRHSDVFCSAS-GDCTLRIW  177 (317)
Q Consensus       102 ~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~  177 (317)
                      ...+...+..++|+|+|+ ++++++ .++.|.+|+..........  ..+...+.++.++|+ ++.+++++ .+..+.+|
T Consensus        78 ~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          78 ESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD-NRTLWVPALKQDRICLF  155 (333)
T ss_dssp             EEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT-SSEEEEEEGGGTEEEEE
T ss_pred             ecccCCCceEEEEcCCCC-EEeecccCCCceeeeccccccceecccccCCCccceEEEeeec-ceeeeccccccceeeEE
Confidence            233455677899999998 666655 5789999998876544333  345667889999999 55555544 56679999


Q ss_pred             eCCCCCceeee------ccCccceEEEEecCCCCcEEEE-EecCCcEEEEEccCCCccEE---EEe------cCCCceeE
Q 021121          178 DVREMGSTMII------PAHEFEILACDWNKYDDCLIAS-ASVDKSIKIWDVRNYRVPIA---VLN------GHGYAVRK  241 (317)
Q Consensus       178 d~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~---~~~------~~~~~v~~  241 (317)
                      +..........      .........++|++ ++..++. ....+...+++.........   ...      ........
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence            98765443321      12334567899999 6655554 44566788888755432221   111      12345677


Q ss_pred             EEecCCCCeeEEeeecCCeEEEEecccccceeee--eecccceeEeEEEEeccCCeEEE-eecCCcEEEEecCC
Q 021121          242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR--YDHHTEFAVGVDMSVLVEGLLAS-TGWDELVYVWQQGM  312 (317)
Q Consensus       242 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~~w~~~~  312 (317)
                      ++++++++.+++++..++.+.+|++.........  .......+.+++|+|+ +++|++ +..++.|++|+++.
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD-Gk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS-GKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT-SSEEEEECTTTCEEEEEEEET
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC-CCEEEEEECCCCeEEEEEEEC
Confidence            8999999977777778899999998765533222  2233456788999999 665554 55678999997754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=9.9e-25  Score=176.95  Aligned_cols=278  Identities=10%  Similarity=0.008  Sum_probs=192.7

Q ss_pred             EEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC
Q 021121           13 VKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL   92 (317)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~   92 (317)
                      ++|++  ++.++++++.      ++.|.+||+.+.+  ........+...+.+++|+|||..+++++..++.|.+||+.+
T Consensus         2 ~a~~~--~~~~l~~~~~------~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_           2 PALKA--GHEYMIVTNY------PNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             CCCCT--TCEEEEEEET------TTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccCCC--CCcEEEEEcC------CCEEEEEECCCCC--EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence            57888  7888888776      8999999998764  222223355667889999999965556777889999999987


Q ss_pred             CCCCCCceeecc------CCcceEEEEEecCCCCEEEEEc------------CCCEEEEEEcCCCceeEEeecc--ccce
Q 021121           93 PPTANPIRSLHE------HTREVHSADYNPTRRDSFITSS------------WDDTVKLWTVDRPTSVRTFKEH--AYCV  152 (317)
Q Consensus        93 ~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~--~~~v  152 (317)
                      +   +....+..      +...+..++|+|+|+ ++++++            .++.+.+|+..+++....+..+  ...+
T Consensus        72 ~---~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  147 (346)
T d1jmxb_          72 C---KNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  147 (346)
T ss_dssp             T---EEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             C---eeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCce
Confidence            6   43333322      123456789999998 665553            4678999999887655444322  2345


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCC-------------------------CCcE
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKY-------------------------DDCL  207 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~-------------------------~~~~  207 (317)
                      ..+.++++ +.++++   ++.+.+|++.+++....+..+. ....+.++|.                         ....
T Consensus       148 ~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         148 YLMRAADD-GSLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             CCEEECTT-SCEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             EEEEecCC-CEEEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence            56666665 555543   2458899998888777665332 2223333331                         2222


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEE
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD  287 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  287 (317)
                      ++++..+..+.+||..+..........+...+..+.+++++.. ++... ++.|.+||..+++ .+..+. +...+.+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~-~~~~~~-~~~~~~~va  298 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRK-LIKAAN-LDHTYYCVA  298 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTE-EEEEEE-CSSCCCEEE
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCc-EEEEEc-CCCCEEEEE
Confidence            3344455678889988877655666778888999999999984 65554 4679999999887 334433 345689999


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      |+|| +++|++++.|+.|++||+.+.+
T Consensus       299 ~s~D-G~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         299 FDKK-GDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             ECSS-SSCEEEESBSSEEEEEETTTTE
T ss_pred             EcCC-CCEEEEEeCCCcEEEEECccCC
Confidence            9999 7899999999999999998753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2e-22  Score=168.39  Aligned_cols=277  Identities=13%  Similarity=0.079  Sum_probs=184.4

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCC--
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTAN--   97 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~--   97 (317)
                      .+.++++...      +|+|.|||..+..    .+..+.....+..++|+||| +++++++.|+.|++||+.+.+...  
T Consensus        31 ~~~~~v~~~d------~g~v~v~D~~t~~----v~~~~~~g~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~   99 (432)
T d1qksa2          31 ENLFSVTLRD------AGQIALIDGSTYE----IKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVA   99 (432)
T ss_dssp             GGEEEEEETT------TTEEEEEETTTCC----EEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             CcEEEEEEcC------CCEEEEEECCCCc----EEEEEeCCCCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEE
Confidence            4566666665      9999999998876    33333444579999999999 688999999999999998652111  


Q ss_pred             CceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-----------ccceEEEEEecCCCCeEE
Q 021121           98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-----------AYCVYNATWNPRHSDVFC  166 (317)
Q Consensus        98 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~  166 (317)
                      .+.....|.+.+.+..|+|||+.++++++.++.|++||..+++.+..+..+           ......+.++|++..+++
T Consensus       100 ~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v  179 (432)
T d1qksa2         100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  179 (432)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence            122234566677777889999855678889999999999999988776543           345677899998555667


Q ss_pred             EEeCCCeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCCCccEEEEe-----cCCCce
Q 021121          167 SASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNYRVPIAVLN-----GHGYAV  239 (317)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~-----~~~~~v  239 (317)
                      +...++.|.+||..+.+...... .+...+..++++| +++++++++. ++.+.++|..+.+. .....     .|....
T Consensus       180 s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~-~~~~~~g~~~~~~~~~  257 (432)
T d1qksa2         180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRG  257 (432)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTC
T ss_pred             EEccCCeEEEEEccCCCcceEEEEcccCccccceECC-CCCEEEEeccccceEEEeecccceE-EEEeccCccccccCcc
Confidence            78889999999998876544322 3455678999999 8887666654 55788899876543 33322     122333


Q ss_pred             eEEEecCCCCeeEEee-ecCCeEEEEeccccc------ceeeee-------------------------ecccceeEeEE
Q 021121          240 RKVKFSPHRRNLLASC-SYDMTVCLWDFMVED------ALVGRY-------------------------DHHTEFAVGVD  287 (317)
Q Consensus       240 ~~~~~~~~~~~~l~~~-~~d~~i~vwd~~~~~------~~~~~~-------------------------~~~~~~v~~~~  287 (317)
                      ....+...+. +.++. ..++.|.+|+.....      .+....                         ..|......++
T Consensus       258 ~~~~~~~~g~-~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~  336 (432)
T d1qksa2         258 ANFVHPTFGP-VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA  336 (432)
T ss_dssp             EEEEETTTEE-EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred             cceecCCCCc-eecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEE
Confidence            3344444443 23322 236667777654321      011111                         11222223344


Q ss_pred             EEeccCCeEEEeecCCcEEEEecCC
Q 021121          288 MSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       288 ~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      + |+ ++.|++++.|+.+++|++.+
T Consensus       337 v-pD-g~~la~~s~d~~~k~w~~~~  359 (432)
T d1qksa2         337 V-FD-IKAMTGDGSDPEFKTLPIAE  359 (432)
T ss_dssp             E-EE-GGGCCCSSSCCCEEEECHHH
T ss_pred             E-Ee-chhhcccccCCceEeccccc
Confidence            4 77 67888888888888888743

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=9.6e-20  Score=146.58  Aligned_cols=254  Identities=13%  Similarity=0.185  Sum_probs=171.6

Q ss_pred             eecCcceeEEEEecCCCCeEE-EEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE-c
Q 021121            4 FKTPFNGYSVKFSPFYESRLA-VATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV-A   81 (317)
Q Consensus         4 ~~~~~~v~~~~~~p~~~~~~~-~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~   81 (317)
                      ++++..+..|+|||  +++.+ +++..      ++.|++|++..................+..++|+|+|. +|++++ .
T Consensus        33 ~~~~~~v~~la~sp--DG~~L~v~~~~------d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~-~l~v~~~~  103 (333)
T d1ri6a_          33 VDVPGQVQPMVVSP--DKRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ-FVFVGSYN  103 (333)
T ss_dssp             EECSSCCCCEEECT--TSSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS-EEEEEETT
T ss_pred             EcCCCCEeEEEEeC--CCCEEEEEECC------CCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCC-EEeecccC
Confidence            56788899999999  56555 44443      89999999987765555555555666788999999995 666665 5


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe------eccccceEEE
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF------KEHAYCVYNA  155 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~  155 (317)
                      ++.|.+|+..... .........+...+.++.++|+++..+.....+..|.+|+..........      ......+..+
T Consensus       104 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i  182 (333)
T d1ri6a_         104 AGNVSVTRLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  182 (333)
T ss_dssp             TTEEEEEEEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             CCceeeecccccc-ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEE
Confidence            7789999987541 12222334566778889999999844445556678999998765433221      1233456889


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCCcee----eec------cCccceEEEEecCCCCcE-EEEEecCCcEEEEEccC
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTM----IIP------AHEFEILACDWNKYDDCL-IASASVDKSIKIWDVRN  224 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~------~~~~~v~~i~~~~~~~~~-l~~~~~d~~i~v~d~~~  224 (317)
                      +|++++.....+....+...+++........    ...      ........+++++ ++++ ++++..++.+.+|++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             EEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeeecccCCeEEEEEEcC
Confidence            9999844444555567788888875442211    111      1233466788999 6654 45556678899999876


Q ss_pred             CCccEEE--EecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccc
Q 021121          225 YRVPIAV--LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMV  268 (317)
Q Consensus       225 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~  268 (317)
                      .......  .......+..++|+|+|+++++++..++.|++|++..
T Consensus       262 ~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         262 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            5433322  2334456789999999996566666779999996543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=1.4e-18  Score=142.09  Aligned_cols=291  Identities=11%  Similarity=-0.013  Sum_probs=185.9

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE----
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV----   80 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----   80 (317)
                      .+..++.+++++|+ ..+++++...  .....+.|.+||....+    .+..+.. .....++|+|||. +|++++    
T Consensus        18 ~~~~p~~~~a~spd-g~~~~~~~~~--~~~~~~~v~v~D~~tg~----~~~~~~~-~~~~~~a~SpDG~-~l~va~~~~~   88 (373)
T d2madh_          18 AADGPTNDEAPGAD-GRRSYINLPA--HHSAIIQQWVLDAGSGS----ILGHVNG-GFLPNPVAAHSGS-EFALASTSFS   88 (373)
T ss_pred             cCCCCccccccCCC-CCEEEEEccc--ccCCCceEEEEECCCCC----EEEEEeC-CCCccEEEcCCCC-EEEEEeecCC
Confidence            35677889999996 3344333221  01125679999987765    2222221 2233799999995 666654    


Q ss_pred             ------cCCeEEEEEeCCCCCCCCceeeccCCcce-------EEEEEecCCCCEEEEE-cCCCEEEEEEcCCCceeEEee
Q 021121           81 ------ADGSVKIYDTALPPTANPIRSLHEHTREV-------HSADYNPTRRDSFITS-SWDDTVKLWTVDRPTSVRTFK  146 (317)
Q Consensus        81 ------~dg~i~v~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~  146 (317)
                            .++.|.+||..+.   +.......+....       ..+.|+++++..++.. ..++.+.+|+....+..... 
T Consensus        89 ~~~~~~~~~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-  164 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-  164 (373)
T ss_pred             cccccccceEEEEEECCCC---cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-
Confidence                  3578999999876   4444444433322       4578888887433332 44678889988876554333 


Q ss_pred             ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC------ccceEEEEecCCCCcEEEEEecCCcEEEE
Q 021121          147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH------EFEILACDWNKYDDCLIASASVDKSIKIW  220 (317)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~d~~i~v~  220 (317)
                         ....++.++|++...+++.+.|+.+.+||...++.......+      ......+.+.+ ++ .++..+.++.+.+|
T Consensus       165 ---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~  239 (373)
T d2madh_         165 ---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSGKILQA  239 (373)
T ss_pred             ---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc-eEEEecCCceEEEE
Confidence               346788999997777889999999999999887766554322      12233445555 44 44555678899999


Q ss_pred             EccCCCccE-EEEecC----------CCceeEEEecCCCCe---------eEEeeecCCeEEEEecccccceeeeeeccc
Q 021121          221 DVRNYRVPI-AVLNGH----------GYAVRKVKFSPHRRN---------LLASCSYDMTVCLWDFMVEDALVGRYDHHT  280 (317)
Q Consensus       221 d~~~~~~~~-~~~~~~----------~~~v~~~~~~~~~~~---------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  280 (317)
                      +........ .....+          ......++++|++..         .+++...++.+.+||..+++. +..+ .+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~-~~~~-~~~  317 (373)
T d2madh_         240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQI-SLG  317 (373)
T ss_pred             EcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE-EEEe-cCC
Confidence            987654211 111111          122344566666553         234455677899999998874 3443 355


Q ss_pred             ceeEeEEEEeccCC-eEEEeecCCcEEEEecCCCCC
Q 021121          281 EFAVGVDMSVLVEG-LLASTGWDELVYVWQQGMDPR  315 (317)
Q Consensus       281 ~~v~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~~~  315 (317)
                      ..+..++|+||+.. ++++++.|+.|++||+.+.++
T Consensus       318 ~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            67899999999433 456888999999999987643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2.4e-19  Score=144.25  Aligned_cols=246  Identities=12%  Similarity=0.078  Sum_probs=165.6

Q ss_pred             CcceeEEEEecCCCCeEE-EEEecccccccCceEEEEecCCCCCcceeeeee---cCCCCeeEEEecCCCCCeEEEEE--
Q 021121            7 PFNGYSVKFSPFYESRLA-VATAQNFGILGNGRVHVLDLSPAAPALTELVAF---DTADGVYDLAWSESHDSLLIAAV--   80 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~-~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~--   80 (317)
                      ...+.+++|+|  +++++ +++..      ++.|.+||+.+.+. ...+...   .+...+..++|+|++. .++++.  
T Consensus        33 ~~~~~~i~~sp--Dg~~l~v~~~~------~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~  102 (337)
T d1pbyb_          33 GPTPMVPMVAP--GGRIAYATVNK------SESLVKIDLVTGET-LGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESP  102 (337)
T ss_dssp             TTCCCCEEECT--TSSEEEEEETT------TTEEEEEETTTCCE-EEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEE
T ss_pred             CCCccEEEECC--CCCEEEEEECC------CCeEEEEECCCCcE-EEEEecCCCcccccceeeEEEcCCCc-EEEEeecC
Confidence            34577999999  55554 45544      89999999987652 1112111   1123456799999984 666654  


Q ss_pred             ----------cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecccc
Q 021121           81 ----------ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAY  150 (317)
Q Consensus        81 ----------~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  150 (317)
                                .++.+.+||....   .....+. +...+..++|+|+++ ++++++.+  +.+||..+++....+..+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~--~~~~d~~~~~~~~~~~~~~~  175 (337)
T d1pbyb_         103 VRLELTHFEVQPTRVALYDAETL---SRRKAFE-APRQITMLAWARDGS-KLYGLGRD--LHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTT---EEEEEEE-CCSSCCCEEECTTSS-CEEEESSS--EEEEETTTTEEEEEECSTTT
T ss_pred             CcceeeeccccccceeeccccCC---eEEEecc-ccCCceEEEEcCCCC-EEEEEcCC--cceeeeecCcEEEEeecCCc
Confidence                      3567888988765   4444444 345678899999998 77777644  67899998887776643221


Q ss_pred             ceEEEEEecCC-----------------------CCeEEEEeCCCeEEEEeCCCCCceee-eccCccceEEEEecCCCCc
Q 021121          151 CVYNATWNPRH-----------------------SDVFCSASGDCTLRIWDVREMGSTMI-IPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       151 ~v~~~~~~~~~-----------------------~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~  206 (317)
                       .....+.|++                       .........++.+.+||..+++.... +..+...+..+.++| ++.
T Consensus       176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  253 (337)
T d1pbyb_         176 -EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKT  253 (337)
T ss_dssp             -TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSS
T ss_pred             -cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cce
Confidence             0111111110                       11122233456789999988765443 445666788889999 887


Q ss_pred             EEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee
Q 021121          207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD  277 (317)
Q Consensus       207 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  277 (317)
                      +++.+  ++.|++||+++.+. +..+. +...+.+++|+|+|+ +|++++.++.|++||..+.+ .+..+.
T Consensus       254 ~~~~~--~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dG~-~l~v~~~~~~i~v~D~~t~~-~v~~i~  318 (337)
T d1pbyb_         254 RAFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLE-KKGQVD  318 (337)
T ss_dssp             EEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCC-EEEEEE
T ss_pred             EEEEc--cccEEEEECCCCcE-EEEEc-CCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCc-EEEEEE
Confidence            77765  58899999998764 44443 566789999999999 68889999999999999887 344444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.2e-18  Score=138.88  Aligned_cols=284  Identities=11%  Similarity=0.042  Sum_probs=171.3

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEE----------
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAA----------   79 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------   79 (317)
                      +.-.+.+|+ ..++.++....  ...++.|.+||..+.+.    +.... .+....++|+||+. +|++.          
T Consensus         4 ~~~~a~spd-g~~~~v~~~~~--~~~~~~v~v~D~~tg~~----~~~~~-~g~~~~~a~SpDg~-~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_           4 RILEAPAPD-ARRVYVNDPAH--FAAVTQQFVIDGEAGRV----IGMID-GGFLPNPVVADDGS-FIAHASTVFSRIARG   74 (355)
T ss_dssp             CBCCCCCCC-TTEEEEEECGG--GCSSEEEEEEETTTTEE----EEEEE-ECSSCEEEECTTSS-CEEEEEEEEEETTEE
T ss_pred             cEeEeeCCC-CCEEEEEeccc--CCCcCeEEEEECCCCcE----EEEEE-CCCCCceEEcCCCC-EEEEEeCCCcccccc
Confidence            333456785 33333333210  01256799999987642    22221 22344799999995 55443          


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccC-------CcceEEEEEecCCCCEEEEE--cCCCEEEEEEcCCCceeEEeecccc
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEH-------TREVHSADYNPTRRDSFITS--SWDDTVKLWTVDRPTSVRTFKEHAY  150 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~  150 (317)
                      ..++.|++||+.+.   +....+..+       ......++|+|+++ .++.+  +.+..+.+|+..+++.+..+..+..
T Consensus        75 ~~d~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_          75 ERTDYVEVFDPVTL---LPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             EEEEEEEEECTTTC---CEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             CCCCEEEEEECCCC---CEEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence            34789999999876   333333211       22335678999998 55554  4567899999999988877764332


Q ss_pred             -------ceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          151 -------CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       151 -------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                             ....+.+++++..+++....++.+.+++......     .+...+....+.+ .+..++.++.++.+++|++.
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECT
T ss_pred             ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccC-CCCeEEEecCCCeEEEEecC
Confidence                   2223444444222222233333444444332221     2233455567777 77788888999999999998


Q ss_pred             CCCccEE-EEecC----------CCceeEEEecCCCCeeEEeeecC---------CeEEEEecccccceeeeeeccccee
Q 021121          224 NYRVPIA-VLNGH----------GYAVRKVKFSPHRRNLLASCSYD---------MTVCLWDFMVEDALVGRYDHHTEFA  283 (317)
Q Consensus       224 ~~~~~~~-~~~~~----------~~~v~~~~~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~v  283 (317)
                      ..+.... ....+          ......++++|++..++++....         ..|.+||..+++ .+..+. +...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~~-~~~~~  302 (355)
T d2bbkh_         225 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFE-MGHEI  302 (355)
T ss_dssp             TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEE-EEEEE
T ss_pred             CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc-EEEEec-CCCCE
Confidence            7653211 11111          12335688999998544333222         369999999887 444444 34568


Q ss_pred             EeEEEEeccCC-eEEEeecCCcEEEEecCCCC
Q 021121          284 VGVDMSVLVEG-LLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       284 ~~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~~  314 (317)
                      .+++|+|++.. ++++++.|+.|++||+.+.+
T Consensus       303 ~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            89999999443 45677789999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=2.3e-18  Score=138.96  Aligned_cols=235  Identities=11%  Similarity=0.031  Sum_probs=166.5

Q ss_pred             EEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE
Q 021121           66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        66 ~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  144 (317)
                      ++|++++ .+|++++.++.|.+||++++   +.+..+. .+...+.+++|+|||+.+++++..++.|.+||+.+++.+..
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCC---CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            4788887 69999999999999999876   6666665 45667889999999985557778899999999999988877


Q ss_pred             eeccc------cceEEEEEecCCCCeEEEEe------------CCCeEEEEeCCCCCceeeeccC--ccceEEEEecCCC
Q 021121          145 FKEHA------YCVYNATWNPRHSDVFCSAS------------GDCTLRIWDVREMGSTMIIPAH--EFEILACDWNKYD  204 (317)
Q Consensus       145 ~~~~~------~~v~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~~~~~  204 (317)
                      +....      ..+..++|+|+ ++.+++++            .++.+.+||..+++....+..+  ...+..+.+++ +
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~D-G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  155 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-D  155 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-T
T ss_pred             ecccccccccCCceEEEEEecC-CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-C
Confidence            65322      34668999999 66666554            4778999998887655444322  23455666766 7


Q ss_pred             CcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCee-------------------------EEeeecCC
Q 021121          205 DCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL-------------------------LASCSYDM  259 (317)
Q Consensus       205 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------l~~~~~d~  259 (317)
                      +.+++++   +.+.+|+..+.+. ...+..+. ....+.++|++..+                         +.++..+.
T Consensus       156 ~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         156 GSLYVAG---PDIYKMDVKTGKY-TVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             SCEEEES---SSEEEECTTTCCE-EEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CEEEEeC---CcceEEEccCCCE-EEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            7666543   5689999987653 55554332 33445555554422                         23344455


Q ss_pred             eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .+.+||..++.........+...+..+.++++ +..++... ++.|++||+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~v~d~~~~  282 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGV-LNRLAKYDLKQR  282 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEE-ESEEEEEETTTT
T ss_pred             eEEEEECCCCceEEEEeecccceeEEEEEeCC-CCEEEEec-CCeEEEEECCCC
Confidence            67788888777566666778888999999998 55566554 467999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=3e-16  Score=128.06  Aligned_cols=263  Identities=10%  Similarity=-0.045  Sum_probs=167.9

Q ss_pred             EEEEecCCCCeEEEEEeccc----ccccCceEEEEecCCCCCcceeeeee-----cCCCCeeEEEecCCCCCeEEEE-Ec
Q 021121           12 SVKFSPFYESRLAVATAQNF----GILGNGRVHVLDLSPAAPALTELVAF-----DTADGVYDLAWSESHDSLLIAA-VA   81 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~----~~~~~g~i~i~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~-~~   81 (317)
                      .++|+|+  ++.++......    ....++.|.+||....+. ...+...     ........+.|++++..+++.. ..
T Consensus        70 ~~a~SpD--G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          70 NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             cEEEcCC--CCEEEEEeecCCcccccccceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            6899994  54444433211    112367899999987652 1111100     0011234578888875333332 33


Q ss_pred             CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc------cceEEE
Q 021121           82 DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA------YCVYNA  155 (317)
Q Consensus        82 dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~~  155 (317)
                      ++.+.+|+....   +.    ..+.....++.++|+++..+++.+.|+.+.+|+...++.......+.      .....+
T Consensus       147 ~~~~~~~~~~~~---~~----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (373)
T d2madh_         147 GPAVGLVVQGGS---SD----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             CCceEEeeccCC---eE----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence            567888886543   22    23344567889999998788899999999999999887766554221      122334


Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCCceeee--ccC----------ccceEEEEecCCCC----------cEEEEEec
Q 021121          156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMII--PAH----------EFEILACDWNKYDD----------CLIASASV  213 (317)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~----------~~~v~~i~~~~~~~----------~~l~~~~~  213 (317)
                      .+.+  ...++..+.++.+.+|+..........  ..+          ......+++++ ++          ..++....
T Consensus       220 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~  296 (373)
T d2madh_         220 QANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAA  296 (373)
T ss_pred             EECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecC
Confidence            4444  345556778899999998876432211  111          11223344444 33          33445566


Q ss_pred             CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCee-EEeeecCCeEEEEecccccceeeeeecccceeEeEEEEe
Q 021121          214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL-LASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       214 d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  290 (317)
                      ++.+.+||..+++. +..+. +...+..++|+|+|+.+ +++++.|+.|++||+.+++ .+..+..+....+.+++.+
T Consensus       297 ~~~v~~~d~~t~~~-~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~-~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         297 AKEVTSVTGLVGQT-SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CCeEEEEECCCCcE-EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEEECCCCCCCcEEEEec
Confidence            77899999988764 44443 56678999999999864 5688899999999999987 6678887777777777764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=2.7e-16  Score=127.30  Aligned_cols=261  Identities=9%  Similarity=0.005  Sum_probs=156.8

Q ss_pred             eEEEEecCCCCeEEEEEeccc----ccccCceEEEEecCCCCCcceeeeee-----cCCCCeeEEEecCCCCCeEEEEE-
Q 021121           11 YSVKFSPFYESRLAVATAQNF----GILGNGRVHVLDLSPAAPALTELVAF-----DTADGVYDLAWSESHDSLLIAAV-   80 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~----~~~~~g~i~i~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~-   80 (317)
                      ..++|||+  ++.++..+...    ....++.|++||...... ...+...     ........++|+|++. .++++. 
T Consensus        50 ~~~a~SpD--g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~  125 (355)
T d2bbkh_          50 PNPVVADD--GSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQF  125 (355)
T ss_dssp             CEEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEEC
T ss_pred             CceEEcCC--CCEEEEEeCCCccccccCCCCEEEEEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCC-eeEEecC
Confidence            36899995  44333322110    112378999999987652 1221111     1122346789999985 555554 


Q ss_pred             -cCCeEEEEEeCCCCCCCCceeeccCCc-------ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccce
Q 021121           81 -ADGSVKIYDTALPPTANPIRSLHEHTR-------EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCV  152 (317)
Q Consensus        81 -~dg~i~v~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  152 (317)
                       .+..+.+|+....   +....+..+..       ....+.+++++..+++....++.+.+++......     .+...+
T Consensus       126 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~  197 (355)
T d2bbkh_         126 SPAPAVGVVDLEGK---AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLI  197 (355)
T ss_dssp             SSSCEEEEEETTTT---EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBC
T ss_pred             CCCceeeeeecCCC---cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eeccee
Confidence             4568899998765   44444433221       2233455555553333334444444444433321     223334


Q ss_pred             EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceee--eccC----------ccceEEEEecCCCCcEEEEEecC------
Q 021121          153 YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI--IPAH----------EFEILACDWNKYDDCLIASASVD------  214 (317)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~----------~~~v~~i~~~~~~~~~l~~~~~d------  214 (317)
                      ....+.++ +..++.++.++.+++|++..++....  ...+          ......+++++ ++..++....+      
T Consensus       198 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         198 NHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             SCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCT
T ss_pred             eeccccCC-CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceee
Confidence            55667777 67788889999999999987654221  1111          11234578888 77766655433      


Q ss_pred             ----CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCe-eEEeeecCCeEEEEecccccceeeeeecccceeEeEEE
Q 021121          215 ----KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-LLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       215 ----~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  288 (317)
                          ..|.+||..+.+. +..+. +...+.+++|+|+|+. ++++++.|+.|++||+++++ .+..+..+......+.+
T Consensus       276 ~~~~~~v~v~d~~t~~~-~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~-~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         276 KTASRFVVVLDAKTGER-LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             TSCEEEEEEEETTTCCE-EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCCSSCCEEEC
T ss_pred             cCCCCeEEEEeCCCCcE-EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC-EEEEEeCcCCCccEEEe
Confidence                3699999998764 55544 3456889999999975 45667789999999999987 55666655444444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=7.9e-16  Score=125.47  Aligned_cols=287  Identities=11%  Similarity=-0.010  Sum_probs=173.1

Q ss_pred             CcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE------
Q 021121            7 PFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV------   80 (317)
Q Consensus         7 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------   80 (317)
                      ..+...++..|+....+++.....   .++..|.++|.....  ...... .+.  ...++|+|||. .|++.+      
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~---~g~~~~~~~d~~~~~--~~~~~~-~~~--~~~~a~spDg~-~i~~~~~~~~~~   89 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYF---AGTTENWVSCAGCGV--TLGHSL-GAF--LSLAVAGHSGS-DFALASTSFARS   89 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTT---CSSEEEEEEETTTTE--EEEEEE-ECT--TCEEEECTTSS-CEEEEEEEETTT
T ss_pred             CCCccccccCCCCcceeEEeeccC---CCcceEEEEeCCCCc--EEEEEe-CCC--CCcceECCCCC-EEEEEcccCccc
Confidence            344455566665344344433221   013456666765543  222221 122  23589999984 666544      


Q ss_pred             ----cCCeEEEEEeCCCCCCCCceeeccCC-------cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccc
Q 021121           81 ----ADGSVKIYDTALPPTANPIRSLHEHT-------REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA  149 (317)
Q Consensus        81 ----~dg~i~v~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  149 (317)
                          .++.|++||..+.   ++...+..+.       .....++|+|||+.++++...++.+.+||+.+++....+..+.
T Consensus        90 ~~g~~d~~v~v~D~~t~---~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTF---LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             TSSSEEEEEEEECTTTC---CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             cccccCCeEEEEECCCC---cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence                3678999998765   4444333221       2234689999999544455568999999999998888776544


Q ss_pred             cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee------ccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII------PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      ...    ..|.+...++..+.||.+.++++.........      ..+...+....+.+ ++..+.+.  .+.+++++..
T Consensus       167 ~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~v~~~~~~  239 (368)
T d1mdah_         167 CFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV--ASSILQGDIP  239 (368)
T ss_dssp             CCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB--SSCCEEEECC
T ss_pred             cce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEec--CCCEEEEeec
Confidence            322    22333567777888899888887765433222      22334455667776 66555543  4667777776


Q ss_pred             CCCccEEE-EecC----------CCceeEEEecCCCCeeEEeeecC--------CeEEEEecccccceeeeeecccceeE
Q 021121          224 NYRVPIAV-LNGH----------GYAVRKVKFSPHRRNLLASCSYD--------MTVCLWDFMVEDALVGRYDHHTEFAV  284 (317)
Q Consensus       224 ~~~~~~~~-~~~~----------~~~v~~~~~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~v~  284 (317)
                      ........ ...+          ......++++|++..+++....+        ..|.+||..+++ .+..+. +...+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~~-~~~~~~  317 (368)
T d1mdah_         240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPIS-NGHDSD  317 (368)
T ss_dssp             SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCE-EEEEEC
T ss_pred             CCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc-EeEEec-CCCcee
Confidence            54421111 0110          11234588899988544443322        358999999887 444444 345788


Q ss_pred             eEEEEeccCC-eEEEeecCCcEEEEecCCCC
Q 021121          285 GVDMSVLVEG-LLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       285 ~~~~~~~~~~-~l~s~~~dg~i~~w~~~~~~  314 (317)
                      +++|+||+.. +++++..|+.|++||..+.+
T Consensus       318 ~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            9999999444 45677789999999987754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.65  E-value=4.3e-15  Score=125.05  Aligned_cols=140  Identities=12%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             eEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceee---eeecCCCCeeEEEecCCCCCeEEEEEc------
Q 021121           11 YSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTEL---VAFDTADGVYDLAWSESHDSLLIAAVA------   81 (317)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~------   81 (317)
                      ..+.|.|  ++.++...        ++.+.+||...+... ..+   ....+...|.++.|+||+. +|+.++.      
T Consensus        20 ~~~~W~~--d~~~~~~~--------~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r   87 (470)
T d2bgra1          20 YSLRWIS--DHEYLYKQ--------ENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWR   87 (470)
T ss_dssp             CCCEECS--SSEEEEES--------SSCEEEEETTTCCEE-EEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSS
T ss_pred             cCCEeCC--CCEEEEEc--------CCcEEEEECCCCCEE-EEEchhhhhhccCccceeEECCCCC-EEEEEECCcceee
Confidence            4688999  67766532        778999999887631 111   1113456799999999994 7776643      


Q ss_pred             ---CCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc----------
Q 021121           82 ---DGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH----------  148 (317)
Q Consensus        82 ---dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----------  148 (317)
                         ++.+.+||+..+    ....+..+...+..+.|+|||+ .++.. .++.+.+|+..+++..+.....          
T Consensus        88 ~s~~~~~~l~d~~~~----~~~~l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          88 HSYTASYDIYDLNKR----QLITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             SCEEEEEEEEETTTT----EECCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             eccCceEEEEECCCC----cccccccCCccccccccccCcc-eeeEe-ecccceEEECCCCceeeeeeccCCCccccccc
Confidence               467889999865    3445677888999999999999 66665 4678999999888665433211          


Q ss_pred             --------ccceEEEEEecCCCCeEEEEe
Q 021121          149 --------AYCVYNATWNPRHSDVFCSAS  169 (317)
Q Consensus       149 --------~~~v~~~~~~~~~~~~l~~~~  169 (317)
                              .+....+.|+|+ ++.|+...
T Consensus       162 d~~~~~~~~~~~~~~~wSPD-Gk~ia~~~  189 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSPN-GTFLAYAQ  189 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECTT-SSEEEEEE
T ss_pred             ceeeeeeecCCccccEECCC-CCccceeE
Confidence                    123456789999 67777654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.63  E-value=2.7e-14  Score=116.37  Aligned_cols=232  Identities=10%  Similarity=0.052  Sum_probs=155.4

Q ss_pred             eeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCE-----------
Q 021121           63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDT-----------  130 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~-----------  130 (317)
                      .......|||+.++++...+++|.++|+++.   +....+. .+......++|+|+++...+++..+..           
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~---k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIM---KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTT---EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCC---cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            4455567898544556667899999999876   4444333 356788999999998854454443333           


Q ss_pred             -------EEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCC--------------------------------
Q 021121          131 -------VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGD--------------------------------  171 (317)
Q Consensus       131 -------v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------------------------  171 (317)
                             +..+|..+.+...++... ..+..+.++|+ ++++++++.+                                
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spd-Gk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYT-GKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             cccccceEEeecCccceeeEEEecC-CCccceEECCC-CCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence                   355888888777776643 45788999999 6666555432                                


Q ss_pred             ---------CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEE-EEEecCCcEEEEEccCCCc----------cEEE
Q 021121          172 ---------CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLI-ASASVDKSIKIWDVRNYRV----------PIAV  231 (317)
Q Consensus       172 ---------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~----------~~~~  231 (317)
                               +.+.+++....+.+..++.... ...+.++| +++++ +++..+++|.+||+.+...          .+..
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                     3344444444455556655443 57899999 78765 5677899999999875321          1111


Q ss_pred             EecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccc---------cceeeee-----ecccceeEeEEEEeccCCeEE
Q 021121          232 LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---------DALVGRY-----DHHTEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~---------~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~  297 (317)
                      .....-.....+|+++|. .+.+...|..|..|++...         ..+...+     .+|...+.+.+++|+ +++|+
T Consensus       307 ~~~~glgplh~~fd~~g~-~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pd-Gk~l~  384 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD-GKWLV  384 (441)
T ss_dssp             CCBCCSCEEEEEECSSSE-EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCC-CCEEE
T ss_pred             ecccccCcccceecCCce-EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCC-CcEEE
Confidence            111222334568999986 6788889999999997532         1233333     578888889999999 89999


Q ss_pred             Ee---ecCC
Q 021121          298 ST---GWDE  303 (317)
Q Consensus       298 s~---~~dg  303 (317)
                      ++   +.|+
T Consensus       385 s~~k~s~dr  393 (441)
T d1qnia2         385 VLSKFSKDR  393 (441)
T ss_dssp             EEESCCGGG
T ss_pred             ecCcccccc
Confidence            99   4554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=6.4e-14  Score=114.16  Aligned_cols=232  Identities=10%  Similarity=0.002  Sum_probs=153.4

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCcee---------------------------eccCCcceEEEEEecCCCCEEEEEcC
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRS---------------------------LHEHTREVHSADYNPTRRDSFITSSW  127 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~---------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~  127 (317)
                      .+++|+.+|.|++|++.+....+.+..                           ...|..........|||+.++++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            466777899999999876521111101                           11233445556668999855566678


Q ss_pred             CCEEEEEEcCCCceeEEeec-cccceEEEEEecCCCCeEEEEeCCCe------------------EEEEeCCCCCceeee
Q 021121          128 DDTVKLWTVDRPTSVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCT------------------LRIWDVREMGSTMII  188 (317)
Q Consensus       128 dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~------------------i~i~d~~~~~~~~~~  188 (317)
                      +++|.++|+++++....+.. ....+..++|+|++....+++..+..                  +..+|..+.+...++
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            89999999999988776653 45679999999984443344433333                  355888888777766


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCC-----------------------------------------cEEEEEccCCCc
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDK-----------------------------------------SIKIWDVRNYRV  227 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~-----------------------------------------~i~v~d~~~~~~  227 (317)
                      ... .....++++| +++++++.+.+.                                         .+.+++... ..
T Consensus       173 ~v~-~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~  249 (441)
T d1qnia2         173 IVD-GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SE  249 (441)
T ss_dssp             EES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CS
T ss_pred             ecC-CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-Cc
Confidence            643 3567899999 888877776432                                         233333332 22


Q ss_pred             cEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee-------eecc---cceeEeEEEEeccCCeEE
Q 021121          228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-------YDHH---TEFAVGVDMSVLVEGLLA  297 (317)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-------~~~~---~~~v~~~~~~~~~~~~l~  297 (317)
                      .+..+..... ...+.++|+|+++++++..+++|.+||+.+.+..+..       +.++   .-.....+|+++ +..+.
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~-g~~yt  327 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR-GNAYT  327 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS-SEEEE
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC-ceEEE
Confidence            3455554443 5789999999987888999999999998764321111       1111   112344588887 67888


Q ss_pred             EeecCCcEEEEecC
Q 021121          298 STGWDELVYVWQQG  311 (317)
Q Consensus       298 s~~~dg~i~~w~~~  311 (317)
                      +...|..|..|++.
T Consensus       328 s~~~ds~v~kw~~~  341 (441)
T d1qnia2         328 TLFIDSQVCKWNIA  341 (441)
T ss_dssp             EETTTTEEEEEEHH
T ss_pred             cccccceEEEeccc
Confidence            88899999999974

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=1.8e-13  Score=111.25  Aligned_cols=250  Identities=9%  Similarity=-0.021  Sum_probs=147.9

Q ss_pred             EEEEecCCCCeEEEEEecccc----cccCceEEEEecCCCCCcceeeeee-----cCCCCeeEEEecCCCCCeEEEEEcC
Q 021121           12 SVKFSPFYESRLAVATAQNFG----ILGNGRVHVLDLSPAAPALTELVAF-----DTADGVYDLAWSESHDSLLIAAVAD   82 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~----~~~~g~i~i~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d   82 (317)
                      .++|+|+  ++.++..+..+.    ...++.|.+||..+... ...+...     ........++|+|||+.++++...+
T Consensus        69 ~~a~spD--g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          69 LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             cceECCC--CCEEEEEcccCccccccccCCeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence            5889994  554444332111    12367899999987652 1111110     1122345689999996444444467


Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEe------eccccceEEEE
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF------KEHAYCVYNAT  156 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~  156 (317)
                      +.+.+||+...   +....+..+....    +.|.+...+++.+.||.+.++++.........      ..+...+....
T Consensus       146 ~~v~~~d~~~~---~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (368)
T d1mdah_         146 SAAAGLSVPGA---SDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ  218 (368)
T ss_dssp             SCEEEEEETTT---EEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred             CeEEEEECCCC---cEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecc
Confidence            99999999876   5555444433321    23344447778888888888887665433222      12333445566


Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--c----------CccceEEEEecCCCCcEEEEEe-cC--------C
Q 021121          157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--A----------HEFEILACDWNKYDDCLIASAS-VD--------K  215 (317)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~----------~~~~v~~i~~~~~~~~~l~~~~-~d--------~  215 (317)
                      +.++ +..+.  ...+.+++++...........  .          .......++++| ++..++... .+        .
T Consensus       219 ~~~~-g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~  294 (368)
T d1mdah_         219 ANYP-GMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAE  294 (368)
T ss_dssp             ETTT-TEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEE
T ss_pred             cccC-cEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCc
Confidence            6665 44443  334556666665543332111  0          011234577888 555554432 22        3


Q ss_pred             cEEEEEccCCCccEEEEecCCCceeEEEecCCCCe-eEEeeecCCeEEEEecccccceeeeeec
Q 021121          216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-LLASCSYDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       216 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                      .|.+||..+++. +..+. +...+..++|+|+++. +++++..++.|++||..+++ .+..+..
T Consensus       295 ~v~v~D~~t~~~-~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk-~~~~i~~  355 (368)
T d1mdah_         295 NTSSVTASVGQT-SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVEL  355 (368)
T ss_dssp             EEEEEESSSCCE-EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCC
T ss_pred             eEEEEECCCCcE-eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEEEEC
Confidence            589999998763 44444 3457889999999975 45677788999999999987 4455543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.54  E-value=7.7e-12  Score=101.18  Aligned_cols=283  Identities=8%  Similarity=0.037  Sum_probs=161.8

Q ss_pred             CeEEEEEecccccccCceEEEEecCCCCCcceeeee--ecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCC
Q 021121           21 SRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVA--FDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANP   98 (317)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~   98 (317)
                      ..|++++...     .+.|+++.++.....+..+..  ......+..|+|+|++ +.|.+.. .+.+..|.+........
T Consensus         3 ~~l~vGtyt~-----~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~-~~ly~~~-~~~~~~~~i~~~~~~~~   75 (365)
T d1jofa_           3 HHLMIGTWTP-----PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAA-MKKWSSFAVKSPTEIVH   75 (365)
T ss_dssp             EEEEEEESSS-----SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEE-BTEEEEEEEEETTEEEE
T ss_pred             eEEEEEeecC-----CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCC-CEEEEEe-CCcEEEEEEeCCCCeEE
Confidence            3567776542     678999888877655544333  2345557789999998 4666665 46788888775321111


Q ss_pred             ceeeccCCcceEEEEEecCCCCEEEEEc--CCCEEEEEEcCCC-c-----------ee-EEe----eccccceEEEEEec
Q 021121           99 IRSLHEHTREVHSADYNPTRRDSFITSS--WDDTVKLWTVDRP-T-----------SV-RTF----KEHAYCVYNATWNP  159 (317)
Q Consensus        99 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~-~-----------~~-~~~----~~~~~~v~~~~~~~  159 (317)
                      ... .........+.++++++..+++..  ..+.|..+.+... .           .. ...    +....-+.++.|+|
T Consensus        76 ~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP  154 (365)
T d1jofa_          76 EAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP  154 (365)
T ss_dssp             EEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT
T ss_pred             Eee-ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC
Confidence            111 111233445677777763333322  2345554443221 0           00 000    11122478999999


Q ss_pred             CCCCeEEEEe-CCCeEEEEeCCCCCceeee-----ccCccceEEEEecCCCCcEEE-EEecCCcEEEEEccCCCccEE-E
Q 021121          160 RHSDVFCSAS-GDCTLRIWDVREMGSTMII-----PAHEFEILACDWNKYDDCLIA-SASVDKSIKIWDVRNYRVPIA-V  231 (317)
Q Consensus       160 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~-~  231 (317)
                      + +++++++. ....|.+|+......+...     .......+.++|+| +++++. +...+++|.+|+......... .
T Consensus       155 d-G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~  232 (365)
T d1jofa_         155 T-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             T-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             C-CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceEEEE
Confidence            9 66555554 4567888886544322211     12345678999999 777664 455678899999876543211 1


Q ss_pred             ---Ee--------------cCCCceeEEEecCCCCeeEEeeecC-----CeEEEEecccccceeeee-----ecccceeE
Q 021121          232 ---LN--------------GHGYAVRKVKFSPHRRNLLASCSYD-----MTVCLWDFMVEDALVGRY-----DHHTEFAV  284 (317)
Q Consensus       232 ---~~--------------~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~-----~~~~~~v~  284 (317)
                         ..              .+......+.++|+|+.++++...+     +.|..|++.....+....     ........
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~  312 (365)
T d1jofa_         233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             eeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCcc
Confidence               10              0112356789999999544443322     237777776543222111     12234467


Q ss_pred             eEEEEeccCCeE-EEeecCCcEEEEecCCC
Q 021121          285 GVDMSVLVEGLL-ASTGWDELVYVWQQGMD  313 (317)
Q Consensus       285 ~~~~~~~~~~~l-~s~~~dg~i~~w~~~~~  313 (317)
                      +++++|..+++| ++...++.|.+|+++.+
T Consensus       313 ~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            799998336655 45567899999998654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.53  E-value=2.3e-11  Score=98.35  Aligned_cols=251  Identities=7%  Similarity=0.000  Sum_probs=148.5

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEE--cCCeE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAV--ADGSV   85 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i   85 (317)
                      .++.-|+|+|  +++.+.+..       .+.+..|.+..... ...............+.++++++..+++..  ..+.|
T Consensus        40 ~~~s~la~s~--d~~~ly~~~-------~~~~~~~~i~~~~~-~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v  109 (365)
T d1jofa_          40 EPISWMTFDH--ERKNIYGAA-------MKKWSSFAVKSPTE-IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAV  109 (365)
T ss_dssp             CCCSEEEECT--TSSEEEEEE-------BTEEEEEEEEETTE-EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred             CCCCEEEEcC--CCCEEEEEe-------CCcEEEEEEeCCCC-eEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEE
Confidence            3455699999  566665554       55788888876543 222222234445677889998843333332  23555


Q ss_pred             EEEEeCCCCCC----------CC---ce-eeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeE---Eee--
Q 021121           86 KIYDTALPPTA----------NP---IR-SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVR---TFK--  146 (317)
Q Consensus        86 ~v~~~~~~~~~----------~~---~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~--  146 (317)
                      ..+.+......          ..   .. ........+.++.|+|+|+.++++......|.+|+......+.   ...  
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T d1jofa_         110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             EEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence            55544321100          00   00 0111233478999999999444444456689998876443222   111  


Q ss_pred             ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-------------------cCccceEEEEecCCCCcE
Q 021121          147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-------------------AHEFEILACDWNKYDDCL  207 (317)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~~~~~v~~i~~~~~~~~~  207 (317)
                      ........++|+|++..+.++...++.|.+|++...+......                   ........+.++| ++++
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~  268 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKY  268 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCE
Confidence            2345689999999944444556678999999987654322111                   1112356789999 8888


Q ss_pred             EEEEec-C-----CcEEEEEccCCCccEEE-----EecCCCceeEEEecC-CCCeeEEeeecCCeEEEEecccc
Q 021121          208 IASASV-D-----KSIKIWDVRNYRVPIAV-----LNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVE  269 (317)
Q Consensus       208 l~~~~~-d-----~~i~v~d~~~~~~~~~~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~vwd~~~~  269 (317)
                      ++++.. +     ..|..|++.........     ..........++++| +|++++++...++.|.+|++...
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            877643 2     23777877654321111     112334567899998 78866666678899999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=7.2e-11  Score=91.15  Aligned_cols=242  Identities=12%  Similarity=0.095  Sum_probs=143.7

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecC
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT  117 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  117 (317)
                      .|.|.|.+..+  ...+  ......+..-+|||||+.+.++....+...+|.....  ......+..+........|+|+
T Consensus        20 ~l~i~d~dG~~--~~~l--~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYDGYN--QFVV--HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAVRQVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETTSCS--CEEE--EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCCCCC--cEEE--ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc--cCceeEEeeeecccccceecCC
Confidence            57888876554  2333  2456778899999999644444444444444443322  1333445567788889999999


Q ss_pred             CCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccccceEEEEEecCCCCeEEEEeCCCe--EEEEeCCCCCceeeeccCccc
Q 021121          118 RRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT--LRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       118 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      +..+++....++...++..... .................+++++...+++...+|.  |...++...... .+......
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~  172 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ  172 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSE
T ss_pred             CCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeeccccc
Confidence            9855545544444433333322 2222222334445556677774555666655654  555666554333 33345566


Q ss_pred             eEEEEecCCCCcEEEEEecC-CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC--CeEEEEecccccc
Q 021121          195 ILACDWNKYDDCLIASASVD-KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDA  271 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~  271 (317)
                      .....|+| +++.++..+.+ +...+|......... ....+........|+|+|+.++++....  ..|.++++..+. 
T Consensus       173 ~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-  249 (269)
T d2hqsa1         173 NQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-  249 (269)
T ss_dssp             EEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-
T ss_pred             cccccccc-ccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-
Confidence            77889999 77776665544 444444443333223 3334555677889999999765555443  357888887654 


Q ss_pred             eeeeeecccceeEeEEEEe
Q 021121          272 LVGRYDHHTEFAVGVDMSV  290 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~  290 (317)
                       ...+....+.+...+|+|
T Consensus       250 -~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         250 -KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             -EEECCCSSSEEEEEEECC
T ss_pred             -EEEEeCCCCcEEeEEeCC
Confidence             344555567788889998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=1.6e-11  Score=94.40  Aligned_cols=242  Identities=7%  Similarity=-0.025  Sum_probs=153.1

Q ss_pred             cCCCCeeEEEecCCCCCeEEE-EEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEc
Q 021121           58 DTADGVYDLAWSESHDSLLIA-AVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV  136 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  136 (317)
                      .+.-....+++.++|. +.++ .+..+.+..++....  ........+ ......+++++++. ++++....+.+++++-
T Consensus        11 ~~~~~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~   85 (260)
T d1rwia_          11 DFRLSPSGVAVDSAGN-VYVTSEGMYGRVVKLATGST--GTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAG   85 (260)
T ss_dssp             CSCCCEEEEEECTTCC-EEEEECSSSCEEEEEC------CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEECTT
T ss_pred             CCcCCCCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCc--eEEEeccCC-ccCceEEEEcCCCC-EEEeeeeeceeeeeee
Confidence            3444568999999984 4444 445567777665432  111111222 23456788999987 7777777777776665


Q ss_pred             CCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc
Q 021121          137 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  216 (317)
                      .+...+.... ....+..+++.++ ++++++-..+..+..++...................+++++ +++++++...++.
T Consensus        86 ~~~~~~~~~~-~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~  162 (260)
T d1rwia_          86 SNNQTVLPFD-GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNR  162 (260)
T ss_dssp             CSCCEECCCC-SCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTE
T ss_pred             ccceeeeeee-eeeeccccccccc-ceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeecccccc
Confidence            5444433332 2345789999998 78887777777788888765433222222233457899999 8888888888889


Q ss_pred             EEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeE
Q 021121          217 IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLL  296 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  296 (317)
                      |..+|...... .............+++++++. ++++....+.|..++......... ....-....+|+++++ +.++
T Consensus       163 i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~~~~-~~~~~~~P~~i~~d~~-g~l~  238 (260)
T d1rwia_         163 VVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVL-PFTGLNTPLAVAVDSD-RTVY  238 (260)
T ss_dssp             EEEECTTTCCE-EECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCCEEC-CCCSCCCEEEEEECTT-CCEE
T ss_pred             cccccccccee-eeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeEEEE-ccCCCCCeEEEEEeCC-CCEE
Confidence            99999776432 222223445568999999987 677777778888887655432221 1122235678999988 6777


Q ss_pred             EEeecCCcEEEEecC
Q 021121          297 ASTGWDELVYVWQQG  311 (317)
Q Consensus       297 ~s~~~dg~i~~w~~~  311 (317)
                      ++-..+++|+..+..
T Consensus       239 vad~~~~rI~~i~~~  253 (260)
T d1rwia_         239 VADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEGGGTEEEEECCC
T ss_pred             EEECCCCEEEEEeCC
Confidence            776667766655543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=1.3e-10  Score=89.23  Aligned_cols=239  Identities=8%  Similarity=0.016  Sum_probs=150.0

Q ss_pred             cCcceeEEEEecCCCCeEEEE-EecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            6 TPFNGYSVKFSPFYESRLAVA-TAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         6 ~~~~v~~~~~~p~~~~~~~~~-~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +....+.+++++  ++.+.++ ...      .+++..++......   .............+++.+++ .++++....+.
T Consensus        12 ~~~~P~~vavd~--dG~i~v~~~~~------~~~i~~~~~~~~~~---~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~   79 (260)
T d1rwia_          12 FRLSPSGVAVDS--AGNVYVTSEGM------YGRVVKLATGSTGT---TVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRV   79 (260)
T ss_dssp             SCCCEEEEEECT--TCCEEEEECSS------SCEEEEEC----CE---EECCCCSCCSCCCEEECTTC-CEEEEETTTEE
T ss_pred             CcCCCCEEEEcC--CCCEEEEEcCC------CCEEEEEcCCCceE---EEeccCCccCceEEEEcCCC-CEEEeeeeece
Confidence            445678999999  4555444 433      67787777655431   12222223346788999987 46666655555


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCe
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDV  164 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (317)
                      +++++-...   ...... .......++++.+++. ++++-..+..+..++...................+++.++ +++
T Consensus        80 i~~~~~~~~---~~~~~~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~~  153 (260)
T d1rwia_          80 VTLAAGSNN---QTVLPF-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNV  153 (260)
T ss_dssp             EEECTTCSC---CEECCC-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTT-CCE
T ss_pred             eeeeeeccc---eeeeee-eeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCC-CCE
Confidence            555432221   222222 2235578899999887 7777677777888877654332222222345678999997 788


Q ss_pred             EEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEe-cCCCceeEEE
Q 021121          165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN-GHGYAVRKVK  243 (317)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~v~~~~  243 (317)
                      +++...++.|..+|.............-.....+++++ +++++++....+.|..++......  .... ..-.....|+
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~--~~~~~~~~~~P~~i~  230 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLNTPLAVA  230 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC--EECCCCSCCCEEEEE
T ss_pred             eeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE--EEEccCCCCCeEEEE
Confidence            88888889999999875543332223345568899998 888888888888898888655332  2222 2224567999


Q ss_pred             ecCCCCeeEEeeecCCeEEEEec
Q 021121          244 FSPHRRNLLASCSYDMTVCLWDF  266 (317)
Q Consensus       244 ~~~~~~~~l~~~~~d~~i~vwd~  266 (317)
                      +++++. ++++-..++.|+.++.
T Consensus       231 ~d~~g~-l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDSDRT-VYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTTCC-EEEEEGGGTEEEEECC
T ss_pred             EeCCCC-EEEEECCCCEEEEEeC
Confidence            999987 6776666676766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=1.7e-10  Score=90.72  Aligned_cols=236  Identities=9%  Similarity=0.003  Sum_probs=155.1

Q ss_pred             eeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEE
Q 021121           53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK  132 (317)
Q Consensus        53 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  132 (317)
                      .+..+.....+..+++.||| +++++...+++|..++...     ....+......+.+++|.++|. ++++...++.+.
T Consensus        20 v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g-----~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~   92 (302)
T d2p4oa1          20 IITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG-----NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIP   92 (302)
T ss_dssp             EEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC-----CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred             EEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCC-----CEEEEEcCCCCcceEEEcCCCC-eEEEecCCceEE
Confidence            34444455568899999998 5888888889887777432     2334445667899999999998 888887788888


Q ss_pred             EEEcCCCce-eEEee--ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec----------cCccceEEEE
Q 021121          133 LWTVDRPTS-VRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP----------AHEFEILACD  199 (317)
Q Consensus       133 iwd~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~v~~i~  199 (317)
                      .++...... ...+.  ......+.+++.++ ++++++.+.++.+..+|...+.......          ........+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             EEEecccccceeeccccCCccccceeEEccC-CCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence            887765422 12221  23456889999998 7888888888999999887654322211          1112345566


Q ss_pred             ecCCCCcEEEEEecCCcEEEEEccCCCccE-EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec
Q 021121          200 WNKYDDCLIASASVDKSIKIWDVRNYRVPI-AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                      ++  .+.++++.+..+.|+.++........ ............++++++|. ++++...++.|..++.......+.....
T Consensus       172 ~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~~~~~~~~~~  248 (302)
T d2p4oa1         172 RF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRSTTIIAQAEQ  248 (302)
T ss_dssp             EE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred             cc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCCEEEEEecCC
Confidence            65  45677777788899999887543211 11111233567899999998 6777777888999887644323333333


Q ss_pred             ccceeEeEEE---EeccCCeEEEee
Q 021121          279 HTEFAVGVDM---SVLVEGLLASTG  300 (317)
Q Consensus       279 ~~~~v~~~~~---~~~~~~~l~s~~  300 (317)
                      .-...++++|   ++| ++.|+.++
T Consensus       249 ~~~~pt~vafg~~~~D-~~~Lyvtt  272 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGD-CTAIYVVT  272 (302)
T ss_dssp             TCTTEEEEEECCSTTT-TTEEEEEE
T ss_pred             CCCCceEEEEcCCCCC-CCEEEEEC
Confidence            3345789999   455 45555443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=9.7e-11  Score=92.11  Aligned_cols=229  Identities=10%  Similarity=0.008  Sum_probs=151.8

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEE
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKI   87 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   87 (317)
                      .-+..++++|  ++.++++...      +++|..++....   ...  .......+.+++|.++| +++++...++.+..
T Consensus        28 ~~~e~iAv~p--dG~l~vt~~~------~~~I~~i~p~g~---~~~--~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          28 TFLENLASAP--DGTIFVTNHE------VGEIVSITPDGN---QQI--HATVEGKVSGLAFTSNG-DLVATGWNADSIPV   93 (302)
T ss_dssp             CCEEEEEECT--TSCEEEEETT------TTEEEEECTTCC---EEE--EEECSSEEEEEEECTTS-CEEEEEECTTSCEE
T ss_pred             CCcCCEEECC--CCCEEEEeCC------CCEEEEEeCCCC---EEE--EEcCCCCcceEEEcCCC-CeEEEecCCceEEE
Confidence            3467899999  6788877664      788877774432   222  23566789999999998 58888888888888


Q ss_pred             EEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeec----------cccceEEEEE
Q 021121           88 YDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKE----------HAYCVYNATW  157 (317)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~  157 (317)
                      ++......................+.+.+++. ++++.+.++.+..++...+........          .......+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1          94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             EEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence            88765321111111123455688999999987 888888899999999887643332211          1123566666


Q ss_pred             ecCCCCeEEEEeCCCeEEEEeCCCCCceeee--ccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC
Q 021121          158 NPRHSDVFCSASGDCTLRIWDVREMGSTMII--PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH  235 (317)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  235 (317)
                      ..  ..++++.+..+.|..++..........  .........+++++ +++++++...++.|..++.......+......
T Consensus       173 ~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~  249 (302)
T d2p4oa1         173 FG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG  249 (302)
T ss_dssp             ET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGT
T ss_pred             cC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCC
Confidence            53  567777888899999988765332211  11233456799999 89988888889999999876432212222223


Q ss_pred             CCceeEEEe---cCCCCeeEEe
Q 021121          236 GYAVRKVKF---SPHRRNLLAS  254 (317)
Q Consensus       236 ~~~v~~~~~---~~~~~~~l~~  254 (317)
                      -...++++|   .++++.+.++
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEE
T ss_pred             CCCceEEEEcCCCCCCCEEEEE
Confidence            345789999   6677754443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.38  E-value=2.1e-11  Score=102.11  Aligned_cols=149  Identities=11%  Similarity=0.213  Sum_probs=106.8

Q ss_pred             eEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc--eeeccCCcceEEEEEecCCCCEEEEEc---------CCCEEE
Q 021121           64 YDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI--RSLHEHTREVHSADYNPTRRDSFITSS---------WDDTVK  132 (317)
Q Consensus        64 ~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~v~  132 (317)
                      ..+.|.+++ .++.  ..++.+.+||+.+++....+  ..+..|...|.++.|+||++ .|+.++         .++.+.
T Consensus        20 ~~~~W~~d~-~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDH-EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSS-EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCC-EEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEE
Confidence            457899987 4554  35788999999877322111  13455678899999999998 777664         357889


Q ss_pred             EEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccC------------------ccc
Q 021121          133 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH------------------EFE  194 (317)
Q Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~  194 (317)
                      +||+++++. ..+..+...+....|+|+ ++.++.. .++.+++|+..+++..+.....                  ...
T Consensus        96 l~d~~~~~~-~~l~~~~~~~~~~~~SPD-G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          96 IYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEECCCCcc-cccccCCccccccccccC-cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            999998764 456778888999999999 7777764 5678999999888665433211                  122


Q ss_pred             eEEEEecCCCCcEEEEEecCCc-EEEE
Q 021121          195 ILACDWNKYDDCLIASASVDKS-IKIW  220 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~-i~v~  220 (317)
                      ...+.|+| +++.|+....|.+ +..|
T Consensus       173 ~~~~~wSP-DGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         173 YSALWWSP-NGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             SBCEEECT-TSSEEEEEEEECTTCCEE
T ss_pred             ccccEECC-CCCccceeEecCCcCceE
Confidence            45678999 9999988765533 4433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=9.4e-10  Score=84.68  Aligned_cols=228  Identities=15%  Similarity=0.106  Sum_probs=136.8

Q ss_pred             ecCcceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCe
Q 021121            5 KTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGS   84 (317)
Q Consensus         5 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   84 (317)
                      +....+.+-+|||+ ..+++......    ....+.+.+.....  .  .....+........|+|++..++.....++.
T Consensus        36 ~~~~~~~sP~wSPD-Gk~IAf~~~~~----~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          36 RSPQPLMSPAWSPD-GSKLAYVTFES----GRSALVIQTLANGA--V--RQVASFPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             EESSCEEEEEECTT-SSEEEEEECTT----SSCEEEEEETTTCC--E--EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             cCCCceeeeEECCC-CCEEEEEEeec----cCcceeeeecccCc--e--eEEeeeecccccceecCCCCeeeEeeecCCc
Confidence            45667788999995 34444444331    12345555554443  2  2333567788899999999655555555555


Q ss_pred             EEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCC--EEEEEEcCCCceeEEeeccccceEEEEEecCCC
Q 021121           85 VKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD--TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS  162 (317)
Q Consensus        85 i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (317)
                      ..++......  .................+++++...+++...+|  .|...++..+... .+...........|+|++.
T Consensus       107 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~  183 (269)
T d2hqsa1         107 LNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK  183 (269)
T ss_dssp             CEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSS
T ss_pred             cceeeccccc--ccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccc
Confidence            5555444321  222223334445556677777775666666565  4555566555333 3344556678889999944


Q ss_pred             CeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC---CcEEEEEccCCCccEEEEecCCCce
Q 021121          163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD---KSIKIWDVRNYRVPIAVLNGHGYAV  239 (317)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~v  239 (317)
                      .++......+...+|......................|+| +|+.|+..+..   ..|+++++....  ...+......+
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~--~~~lt~~~g~~  260 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQV  260 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEE
T ss_pred             eeEEEeecCCceeeeEeecccccceEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCC--EEEEeCCCCcE
Confidence            4454455555555554443333334444555667889999 88887755433   468899987654  45566667778


Q ss_pred             eEEEecCC
Q 021121          240 RKVKFSPH  247 (317)
Q Consensus       240 ~~~~~~~~  247 (317)
                      ...+|+|-
T Consensus       261 ~~p~WSP~  268 (269)
T d2hqsa1         261 KFPAWSPY  268 (269)
T ss_dssp             EEEEECCC
T ss_pred             EeEEeCCC
Confidence            88999983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.36  E-value=2.4e-09  Score=84.36  Aligned_cols=254  Identities=10%  Similarity=0.094  Sum_probs=155.1

Q ss_pred             ceeEEEEecCCCCeEEEEEecc-cccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQN-FGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSVK   86 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~-~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   86 (317)
                      .+..++|.|  ++.+.++.... .....+|+|..||.............. .....-..++|.+++ +.++++...+.|.
T Consensus        19 g~EGpa~d~--dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~   95 (314)
T d1pjxa_          19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGLL   95 (314)
T ss_dssp             TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEEE
T ss_pred             CCeEeEEeC--CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeEE
Confidence            346788999  56666654321 111235678888877654211111000 111235689999998 4677777667788


Q ss_pred             EEEeCCCCCCCCceeeccC-CcceEEEEEecCCCCEEEEEcC---------------CCEEEEEEcCCCceeEEeecccc
Q 021121           87 IYDTALPPTANPIRSLHEH-TREVHSADYNPTRRDSFITSSW---------------DDTVKLWTVDRPTSVRTFKEHAY  150 (317)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~  150 (317)
                      .++.+............+. -...+.+++.++|. +.++-..               .|.|..++.+ ++.... ...-.
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~-~~~~~  172 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQ  172 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEES
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec-CceeEe-eCCcc
Confidence            8886543100000111111 11357789999987 6665321               3456555543 333322 22334


Q ss_pred             ceEEEEEecCCC----CeEEEEeCCCeEEEEeCCCCCceee------ecc-CccceEEEEecCCCCcEEEEEecCCcEEE
Q 021121          151 CVYNATWNPRHS----DVFCSASGDCTLRIWDVREMGSTMI------IPA-HEFEILACDWNKYDDCLIASASVDKSIKI  219 (317)
Q Consensus       151 ~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~------~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~v  219 (317)
                      ..+.++|+|++.    .++++-+..+.|..||+.....+..      +.. .......+++.+ +++++++....+.|.+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEE
Confidence            467899999732    2555667788999998765433221      111 122356789998 8999888888899999


Q ss_pred             EEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ||....+ ....+.......++++|.|+++.++++.+.+|.|.-.++....
T Consensus       252 ~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         252 FGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EeCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            9987655 3455555556789999999998778888888988888865543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.36  E-value=3.9e-09  Score=83.07  Aligned_cols=242  Identities=9%  Similarity=0.028  Sum_probs=149.6

Q ss_pred             CCeeEEEecCCCCCeEEEEEc-------CCeEEEEEeCCCCCCCCceeec----cCCcceEEEEEecCCCCEEEEEcCCC
Q 021121           61 DGVYDLAWSESHDSLLIAAVA-------DGSVKIYDTALPPTANPIRSLH----EHTREVHSADYNPTRRDSFITSSWDD  129 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~-------dg~i~v~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg  129 (317)
                      .....++|.|+|. +.++...       +|+|..||...+   .......    .....-..+.|.+++. .++++...+
T Consensus        18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~---~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~   92 (314)
T d1pjxa_          18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRL   92 (314)
T ss_dssp             TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTT
T ss_pred             CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCC---cEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCC
Confidence            3466789999984 5544322       456777776543   1111111    1123356899999987 677776667


Q ss_pred             EEEEEEcCCCceeEEeeccc----cceEEEEEecCCCCeEEEEeC---------------CCeEEEEeCCCCCceeeecc
Q 021121          130 TVKLWTVDRPTSVRTFKEHA----YCVYNATWNPRHSDVFCSASG---------------DCTLRIWDVREMGSTMIIPA  190 (317)
Q Consensus       130 ~v~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~  190 (317)
                      .|..++.+............    ..++.+++.++ +++.++-..               .|.|..++.. ++... +..
T Consensus        93 ~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~  169 (314)
T d1pjxa_          93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDT  169 (314)
T ss_dssp             EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEE
T ss_pred             eEEEEeCCCcEEEEEeccccccccCCCcEEEECCC-CCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeC
Confidence            78888887553221111111    13578999998 777666322               3445555543 23222 222


Q ss_pred             CccceEEEEecCCCCc-----EEEEEecCCcEEEEEccCCCccE-----EEEec-CCCceeEEEecCCCCeeEEeeecCC
Q 021121          191 HEFEILACDWNKYDDC-----LIASASVDKSIKIWDVRNYRVPI-----AVLNG-HGYAVRKVKFSPHRRNLLASCSYDM  259 (317)
Q Consensus       191 ~~~~v~~i~~~~~~~~-----~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~  259 (317)
                      .-...+.++|+| +++     ++++-+..+.|..||+.......     ..+.. .......+++.++|+ +.++....+
T Consensus       170 ~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g  247 (314)
T d1pjxa_         170 AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSS  247 (314)
T ss_dssp             EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTT
T ss_pred             CcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCC
Confidence            223346788988 543     55666778889999987543211     11111 223456899999998 666666788


Q ss_pred             eEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       260 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      .|.+||.+.++ ....+.......++++|.|++..++++.+.+|.|...++...
T Consensus       248 ~I~~~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         248 HIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEEeCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            99999987665 444455555668899999984457788888898888887654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=6.3e-09  Score=80.51  Aligned_cols=236  Identities=10%  Similarity=0.080  Sum_probs=156.9

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeec------cCCcceEEEEEecCCCCEEEE-EcCCCEEEEE
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH------EHTREVHSADYNPTRRDSFIT-SSWDDTVKLW  134 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~-~~~dg~v~iw  134 (317)
                      ....+++.+++ +++++-..+..|++||.+.    ..+..+.      ........+++.++....+++ .+.++.|..+
T Consensus        24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~~G----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQN-DIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCC-CEEEEECCCCEEEEEeCCC----CEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            35789999988 4777767788999998542    2332221      112234456666554434443 3455678888


Q ss_pred             EcCCCceeEEee-ccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee--ccCccceEEEEecCCCCcEEEEE
Q 021121          135 TVDRPTSVRTFK-EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII--PAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       135 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      +.. ++....+. ........+++.++ +.++++....+.+.+++.. ++.+..+  ..+......+++.+ +++++++.
T Consensus        99 ~~~-g~~~~~~~~~~~~~p~~~avd~~-G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d  174 (279)
T d1q7fa_          99 NQY-GQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISD  174 (279)
T ss_dssp             CTT-SCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred             ccc-ccceeecCCCcccccceeccccC-CcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc-ceeEEeee
Confidence            764 55555553 23456788999988 7888887778889998864 4555554  23445677889998 88999988


Q ss_pred             ecCCcEEEEEccCCCccEEEEe--cCCCceeEEEecCCCCeeEEeee-cCCeEEEEecccccceeeeeecc--cceeEeE
Q 021121          212 SVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCS-YDMTVCLWDFMVEDALVGRYDHH--TEFAVGV  286 (317)
Q Consensus       212 ~~d~~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~--~~~v~~~  286 (317)
                      ...+.|++||... + .+..+.  +.......|++.|+|+ ++++-. .++.|.+|+. +++ .+..+...  ......+
T Consensus       175 ~~~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~-~~~~~~~~~~~~~p~~v  249 (279)
T d1q7fa_         175 NRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQ-LISALESKVKHAQCFDV  249 (279)
T ss_dssp             GGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSC-EEEEEEESSCCSCEEEE
T ss_pred             ccccceeeeecCC-c-eeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC-CCC-EEEEEeCCCCCCCEeEE
Confidence            8889999999754 3 244442  2344578999999998 565543 3557999984 344 44444322  2357889


Q ss_pred             EEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          287 DMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       287 ~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ++.|+ +.+ +.++.++.|++|+...-
T Consensus       250 av~~d-G~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         250 ALMDD-GSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEETT-TEE-EEEETTTEEEEEECSCC
T ss_pred             EEeCC-CcE-EEEeCCCeEEEEEeeee
Confidence            99997 554 44567899999998764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=1.2e-08  Score=78.96  Aligned_cols=239  Identities=10%  Similarity=0.138  Sum_probs=154.8

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeec----CCCCeeEEEecCCCCCeEEEE-EcCC
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFD----TADGVYDLAWSESHDSLLIAA-VADG   83 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~-~~dg   83 (317)
                      .+..++++|  ++.+.++-..      +.+|++||.+..  .........    .......+++.++....+++. +.++
T Consensus        24 ~P~gvavd~--dg~i~VaD~~------n~rI~v~d~~G~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   93 (279)
T d1q7fa_          24 EPSGVAVNA--QNDIIVADTN------NHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH   93 (279)
T ss_dssp             CEEEEEECT--TCCEEEEEGG------GTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CccEEEEcC--CCCEEEEECC------CCEEEEEeCCCC--EEEEecccCCCcccccccccccccccccccceeccCCcc
Confidence            357899999  5667777554      779999986532  111111111    111234566655543344433 3445


Q ss_pred             eEEEEEeCCCCCCCCceeec-cCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--ccccceEEEEEecC
Q 021121           84 SVKIYDTALPPTANPIRSLH-EHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPR  160 (317)
Q Consensus        84 ~i~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~  160 (317)
                      .|..++..    ......+. ........+++.+++. ++++....+.+.+++.. ++.+..+.  .+......+++.++
T Consensus        94 ~i~~~~~~----g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          94 QIQIYNQY----GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             EEEEECTT----SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred             cccccccc----ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc
Confidence            66666643    23333332 3345677899999887 77777778889998865 55555553  34456788999988


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEec-CCcEEEEEccCCCccEEEEec--C
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASASV-DKSIKIWDVRNYRVPIAVLNG--H  235 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~--~  235 (317)
                       ++++++....+.|++||.. ++.+..+.  +.......|++++ +++++++-.. ++.|.+|+.. ++ .+..+..  .
T Consensus       168 -g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~-~~~~~~~~~~  242 (279)
T d1q7fa_         168 -QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQ-LISALESKVK  242 (279)
T ss_dssp             -SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SC-EEEEEEESSC
T ss_pred             -eeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CC-EEEEEeCCCC
Confidence             7888888889999999964 55555553  2334578899999 8888777544 4569999854 34 2444432  2


Q ss_pred             CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          236 GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       236 ~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ......+++.|+|. +++ ++.++.|++|......
T Consensus       243 ~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         243 HAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CSCEEEEEEETTTE-EEE-EETTTEEEEEECSCCC
T ss_pred             CCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeeeec
Confidence            34578999999986 444 5678999999987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.13  E-value=1.9e-07  Score=72.45  Aligned_cols=225  Identities=13%  Similarity=0.077  Sum_probs=144.6

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeC
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTA   91 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~   91 (317)
                      +..|++. ++.+...--.      .++|..||.....     ...+..+..+.++++.+++ .+++ ++.+ .+.++|..
T Consensus        22 gp~wd~~-~~~l~wvDi~------~~~I~r~d~~~g~-----~~~~~~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~   86 (295)
T d2ghsa1          22 GPTFDPA-SGTAWWFNIL------ERELHELHLASGR-----KTVHALPFMGSALAKISDS-KQLI-ASDD-GLFLRDTA   86 (295)
T ss_dssp             EEEEETT-TTEEEEEEGG------GTEEEEEETTTTE-----EEEEECSSCEEEEEEEETT-EEEE-EETT-EEEEEETT
T ss_pred             CCeEECC-CCEEEEEECC------CCEEEEEECCCCe-----EEEEECCCCcEEEEEecCC-CEEE-EEeC-ccEEeecc
Confidence            4567774 4555544333      6789889887653     2334456678999999887 3444 4555 48889987


Q ss_pred             CCCCCCCceeecc--CCcceEEEEEecCCCCEEEEEcC----CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeE
Q 021121           92 LPPTANPIRSLHE--HTREVHSADYNPTRRDSFITSSW----DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVF  165 (317)
Q Consensus        92 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (317)
                      +++ .+.+.....  ....++.+.+.|+|. +.++...    .+.-.+|.+..++...... .-...+.++|++++..++
T Consensus        87 tg~-~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          87 TGV-LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             TCC-EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEE
T ss_pred             cce-eeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEE
Confidence            652 111211111  223678899999997 5554322    2344566666665544443 334578899999955566


Q ss_pred             EEEeCCCeEEEEeCCCCC------ce--eeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC
Q 021121          166 CSASGDCTLRIWDVREMG------ST--MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~------~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      ++-+..+.|..|++....      ..  ............+++.. ++++.++.-..+.|..||.. ++ .+..+.-...
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~-G~-~~~~i~lP~~  240 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GN-HIARYEVPGK  240 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CC-EEEEEECSCS
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCC-Cc-EeeEecCCCC
Confidence            777788999999875321      11  11223345577889998 88888887778899999964 44 3566655455


Q ss_pred             ceeEEEec-CCCCeeEEeeec
Q 021121          238 AVRKVKFS-PHRRNLLASCSY  257 (317)
Q Consensus       238 ~v~~~~~~-~~~~~~l~~~~~  257 (317)
                      .+++++|- |+.+.|++|...
T Consensus       241 ~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             BEEEEEEESTTSCEEEEEEBC
T ss_pred             ceEEEEEeCCCCCEEEEEECC
Confidence            78999996 676767776554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.13  E-value=6.4e-07  Score=70.34  Aligned_cols=228  Identities=10%  Similarity=0.049  Sum_probs=141.4

Q ss_pred             CCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcC----CCEEEEEEc
Q 021121           61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSW----DDTVKLWTV  136 (317)
Q Consensus        61 ~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~  136 (317)
                      ..+..++|.++| ++.++-...+.|..|+.+..   ...............+++.++|. ++++...    .+.+...+.
T Consensus        40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~---~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPETK---EIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTCEEEEECTTTC---CEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECT
T ss_pred             cCcEeCEECCCC-CEEEEECCCCEEEEEECCCC---eEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcC
Confidence            345689999998 57777777888888876543   23333334456678999999997 6665432    345666666


Q ss_pred             CCCceeEEeec--cccceEEEEEecCCCCeEEEEeC------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc-E
Q 021121          137 DRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASG------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-L  207 (317)
Q Consensus       137 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~  207 (317)
                      ...........  ....++.+++.++ +++.++...      .+.+..++.... .+..+...-...+.++|+| +++ +
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~-G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~-dg~~l  191 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALST-DEKVL  191 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECT-TSSEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEec-cceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeecc-ccceE
Confidence            55544433321  2335788999998 676665432      234666665433 3333322233457899999 776 4


Q ss_pred             EEEEecCCcEEEEEccCCCccEEEE-------ecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeee---
Q 021121          208 IASASVDKSIKIWDVRNYRVPIAVL-------NGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYD---  277 (317)
Q Consensus       208 l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---  277 (317)
                      +++-+..+.|+.||+..........       .........+++.++|. +.++....+.|.++|. .++ ++..+.   
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~-~l~~i~~P~  268 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGY-PIGQILIPG  268 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSC-EEEEEECTT
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC-CCc-EEEEEeCCC
Confidence            5666678899999987543222111       11122356899999998 6777777899999995 454 344443   


Q ss_pred             ---cccceeEeEEEEeccCCeEEEe
Q 021121          278 ---HHTEFAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       278 ---~~~~~v~~~~~~~~~~~~l~s~  299 (317)
                         ++...+++++|.+....++++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEc
Confidence               2334578999988733344443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-08  Score=82.75  Aligned_cols=283  Identities=8%  Similarity=0.075  Sum_probs=153.1

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-c-CCCCeeEEEecCCCCCeEEEEE---------
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-D-TADGVYDLAWSESHDSLLIAAV---------   80 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~---------   80 (317)
                      ...|.+  ++.++....       +|.|.+||......  ..+... . ..-.+....|+||+. +++...         
T Consensus        21 ~~~W~~--~~~~~~~~~-------~g~i~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          21 EAKWIS--DTEFIYREQ-------KGTVRLWNVETNTS--TVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHS   88 (465)
T ss_dssp             CCCBSS--SSCBCCCCS-------SSCEEEBCGGGCCC--EEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSC
T ss_pred             CCEEeC--CCcEEEEeC-------CCcEEEEECCCCCE--EEEEcCccccccccceeEECCCCC-eEEEEEcccceeEee
Confidence            356888  455544322       78999999987653  111111 1 223567788999985 555543         


Q ss_pred             cCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeecc-cc---------
Q 021121           81 ADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEH-AY---------  150 (317)
Q Consensus        81 ~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~---------  150 (317)
                      ..+.+.++|+.++. ...+.........+....|+|+|+ .++-.. ++.|.+.+..++..++..... ..         
T Consensus        89 ~~~~~~i~d~~~~~-~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~  165 (465)
T d1xfda1          89 YTGYYVLSKIPHGD-PQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW  165 (465)
T ss_dssp             CCSEEEEEESSSCC-CEECCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred             ccccEEEEEccCCc-eeeccCccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccch
Confidence            34678999998752 222222233345566688999999 455444 578888888776655443211 11         


Q ss_pred             --------ceEEEEEecCCCCeEEEEe-CCC---------------------------------eEEEEeCCCCCceeee
Q 021121          151 --------CVYNATWNPRHSDVFCSAS-GDC---------------------------------TLRIWDVREMGSTMII  188 (317)
Q Consensus       151 --------~v~~~~~~~~~~~~l~~~~-~dg---------------------------------~i~i~d~~~~~~~~~~  188 (317)
                              .-..+.|+|+ ++.|+... .+.                                 .+.++|+.++......
T Consensus       166 vyeee~~~~~~a~~WSPD-gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~  244 (465)
T d1xfda1         166 LYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (465)
T ss_dssp             HHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             hhhhhhccccceEEECCC-CCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEE
Confidence                    1257789999 66666543 222                                 2445555443222111


Q ss_pred             c------cCccceEEEEecCCCCcEEEEEec-C---CcEEEEEccCCCccEEEEecCCCce----eEEEecCCCCeeEEe
Q 021121          189 P------AHEFEILACDWNKYDDCLIASASV-D---KSIKIWDVRNYRVPIAVLNGHGYAV----RKVKFSPHRRNLLAS  254 (317)
Q Consensus       189 ~------~~~~~v~~i~~~~~~~~~l~~~~~-d---~~i~v~d~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~  254 (317)
                      .      .....+..+.|+| ++++++.... +   ..+.++|..+++............|    ....|+|+|+.++..
T Consensus       245 ~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi  323 (465)
T d1xfda1         245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (465)
T ss_dssp             CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEE
Confidence            1      1122367789998 7776665432 2   2588889888764322222223222    346799999864332


Q ss_pred             -ee-cCC--eEEEEeccc-----ccceeeeeecccceeEeE-EEEeccCCeEEEeecC--CcEEEEecC
Q 021121          255 -CS-YDM--TVCLWDFMV-----EDALVGRYDHHTEFAVGV-DMSVLVEGLLASTGWD--ELVYVWQQG  311 (317)
Q Consensus       255 -~~-~d~--~i~vwd~~~-----~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~d--g~i~~w~~~  311 (317)
                       .+ .+|  .+....+..     .......+....-.|..+ .|+++++.+.+++..+  +.-.+|.+.
T Consensus       324 ~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~  392 (465)
T d1xfda1         324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (465)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence             22 222  344333221     111222333333345554 5777744455555543  234466654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=2.2e-07  Score=73.05  Aligned_cols=199  Identities=8%  Similarity=0.014  Sum_probs=131.8

Q ss_pred             cceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC----CCeEEEEeCCCC
Q 021121          107 REVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG----DCTLRIWDVREM  182 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~  182 (317)
                      .....++|.++|+ ++++-...+.|..|+.++++....+.........+++.++ ++++++...    .+.+...+....
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEEEEcCCCc
Confidence            3456899999987 7888888999999999887766666556667899999998 777766533    344666666555


Q ss_pred             Cceeeecc--CccceEEEEecCCCCcEEEEEecC------CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          183 GSTMIIPA--HEFEILACDWNKYDDCLIASASVD------KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       183 ~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                      ........  .....+.+++.+ ++++.++....      +.+..++.....  +..+...-...+.++|+|+++.++++
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeeccccceEEEe
Confidence            44333321  123467889999 88877764321      235555544322  33332223345789999999866677


Q ss_pred             eecCCeEEEEecccccceeeee-------ecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          255 CSYDMTVCLWDFMVEDALVGRY-------DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       255 ~~~d~~i~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      -+..+.|..|++..........       .........|++.++ +++.++....+.|.+|+-.
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEEECTT
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC-CCEEEEEcCCCEEEEECCC
Confidence            7778999999986543111111       111223567899888 7777877788999998854

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.96  E-value=3e-06  Score=65.57  Aligned_cols=223  Identities=8%  Similarity=-0.041  Sum_probs=140.4

Q ss_pred             EEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEE
Q 021121           65 DLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        65 ~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  144 (317)
                      ...|.+..+.+..+--..+.|..||.+++   + ...+ .....+.++++.+++. +++ ++.+ .+..+|..+++....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g---~-~~~~-~~~~~~~~i~~~~dg~-l~v-a~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASG---R-KTVH-ALPFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTT---E-EEEE-ECSSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCC---e-EEEE-ECCCCcEEEEEecCCC-EEE-EEeC-ccEEeecccceeeEE
Confidence            45688765455555556788988987754   2 2222 2345788899998876 444 4544 688999998875443


Q ss_pred             eec----cccceEEEEEecCCCCeEEEEeC----CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc-EEEEEecCC
Q 021121          145 FKE----HAYCVYNATWNPRHSDVFCSASG----DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-LIASASVDK  215 (317)
Q Consensus       145 ~~~----~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~~~~~d~  215 (317)
                      ...    ....++.+.+.|+ +++.++...    .+.-.+|.+..++...... .-...+.++|++ +++ ++++-+..+
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~-d~~~l~~~dt~~~  170 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSP-DGTTGYFVDTKVN  170 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECT-TSCEEEEEETTTC
T ss_pred             eeeecCCCcccceeeEECCC-CCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecC-CCceEEEeecccc
Confidence            321    2236889999998 676655432    2344566666655443333 233457899999 555 566666788


Q ss_pred             cEEEEEccCCC-----ccE--EEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEE
Q 021121          216 SIKIWDVRNYR-----VPI--AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDM  288 (317)
Q Consensus       216 ~i~v~d~~~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  288 (317)
                      .|..|++....     ...  ....+.......+++..+|. +.++.-..+.|..||.. ++ ++..+.-....+++++|
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~-G~-~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GN-HIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT-CC-EEEEEECSCSBEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCC-Cc-EeeEecCCCCceEEEEE
Confidence            89999875321     111  12223445678999999997 55555567889999954 44 45566555567899999


Q ss_pred             E-eccCCeEEEeec
Q 021121          289 S-VLVEGLLASTGW  301 (317)
Q Consensus       289 ~-~~~~~~l~s~~~  301 (317)
                      - ++...+++|...
T Consensus       248 GG~d~~~LyvTta~  261 (295)
T d2ghsa1         248 IGPDASRLLVTSAR  261 (295)
T ss_dssp             ESTTSCEEEEEEBC
T ss_pred             eCCCCCEEEEEECC
Confidence            7 453345565443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.9e-06  Score=71.15  Aligned_cols=292  Identities=10%  Similarity=0.036  Sum_probs=149.5

Q ss_pred             ceeEEEEecCCCCeEEEEEec--ccccccCceEEEEecCCCCCcceeeeee-cCCCCeeEEEecCCCCCeEEEEEcCCeE
Q 021121            9 NGYSVKFSPFYESRLAVATAQ--NFGILGNGRVHVLDLSPAAPALTELVAF-DTADGVYDLAWSESHDSLLIAAVADGSV   85 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~--~~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i   85 (317)
                      .+....|||+ ...++.+...  .+-....+.+.++|+....  ...+... .....+....|||+|. .+|-.. ++.|
T Consensus        62 ~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~--~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl  136 (465)
T d1xfda1          62 RAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGD--PQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNI  136 (465)
T ss_dssp             TCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCC--CEECCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEE
T ss_pred             ccceeEECCC-CCeEEEEEcccceeEeeccccEEEEEccCCc--eeeccCccCCccccceeeeccCCc-eEEEEe-cceE
Confidence            5667789995 2334444321  1111235789999998765  2223211 2234566789999995 555554 5677


Q ss_pred             EEEEeCCCCCCCCceee-ccCC-----------------cceEEEEEecCCCCEEEEEc-CCC-----------------
Q 021121           86 KIYDTALPPTANPIRSL-HEHT-----------------REVHSADYNPTRRDSFITSS-WDD-----------------  129 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~~-~~~~-----------------~~v~~~~~~~~~~~~l~~~~-~dg-----------------  129 (317)
                      .+.+...+   ...+.. .+..                 +.-..+.|+|||+ .|+... .+.                 
T Consensus       137 ~~~~~~~~---~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~  212 (465)
T d1xfda1         137 YYCAHVGK---QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPT  212 (465)
T ss_dssp             EEESSSSS---CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             EEEecCCC---ceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccceeecccccccccce
Confidence            77776543   222111 1111                 1125678999999 666543 222                 


Q ss_pred             ----------------EEEEEEcCCCceeEEee------ccccceEEEEEecCCCCeEEEEeC-C---CeEEEEeCCCCC
Q 021121          130 ----------------TVKLWTVDRPTSVRTFK------EHAYCVYNATWNPRHSDVFCSASG-D---CTLRIWDVREMG  183 (317)
Q Consensus       130 ----------------~v~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~  183 (317)
                                      .+.++|++++.......      ....-+..+.|.|+ +++++.... +   ..+.++|..+++
T Consensus       213 ~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d-~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC-CeEEEEEEccccccceEEEEcCCCCc
Confidence                            34455554433221111      11224678899988 555554322 2   358889998887


Q ss_pred             ceeeeccCc-cc----eEEEEecCCCCcEEE---EEecC--CcEEEEEccCC-----CccEEEEecCCCceeEE-EecCC
Q 021121          184 STMIIPAHE-FE----ILACDWNKYDDCLIA---SASVD--KSIKIWDVRNY-----RVPIAVLNGHGYAVRKV-KFSPH  247 (317)
Q Consensus       184 ~~~~~~~~~-~~----v~~i~~~~~~~~~l~---~~~~d--~~i~v~d~~~~-----~~~~~~~~~~~~~v~~~-~~~~~  247 (317)
                      ....+.... ..    -....|+| +++.++   ....+  +.++.+++...     ......+....-.|..+ .|+++
T Consensus       292 ~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~  370 (465)
T d1xfda1         292 CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK  370 (465)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred             EEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCC
Confidence            655443221 11    13456788 665322   22222  23554443211     11123333334455555 68888


Q ss_pred             CCeeEEeeecCC--eEEEEecc--ccc--ceeeeeecccceeEeEEEEeccCCeEE-Eeec--CCcEEEEecCC
Q 021121          248 RRNLLASCSYDM--TVCLWDFM--VED--ALVGRYDHHTEFAVGVDMSVLVEGLLA-STGW--DELVYVWQQGM  312 (317)
Q Consensus       248 ~~~~l~~~~~d~--~i~vwd~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~--dg~i~~w~~~~  312 (317)
                      ++.+.+++..++  .-++|.+.  ...  .++...........++.|||+ +++++ +++.  --.+.+++...
T Consensus       371 ~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~-~~y~v~~~s~~~~P~~~~~~~~~  443 (465)
T d1xfda1         371 GNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS-MDFFLLKCEGPGVPMVTVHNTTD  443 (465)
T ss_dssp             TTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT-SSEEEEECCSSSSCCEEEEETTT
T ss_pred             CCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCC-CCEEEEEeecCCCCeEEEEECCC
Confidence            886666665432  33455443  222  111111123345678999999 55444 4432  23455665443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1e-05  Score=61.23  Aligned_cols=249  Identities=11%  Similarity=0.073  Sum_probs=149.0

Q ss_pred             CceEEEEecCCCCCcc--eeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEE
Q 021121           36 NGRVHVLDLSPAAPAL--TELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSAD  113 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~  113 (317)
                      .+.|+-.+++......  ...........+..++|.+..+.+..+-..++.|+..+++..   ............+.+++
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~---~~~~v~~~~~~~p~~iA   85 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---EPTTIIRQDLGSPEGIA   85 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---CCEEEECTTCCCEEEEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC---CcEEEEEeccccccEEE
Confidence            4578888876543211  111111233457889999876545555556688888887654   22222333335678899


Q ss_pred             EecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--eEEEEeCCCCCceeeeccC
Q 021121          114 YNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--TLRIWDVREMGSTMIIPAH  191 (317)
Q Consensus       114 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~  191 (317)
                      +..-+..+..+-...+.|.+.++........+......+..+++.|..+.++.+-...+  .|.--++............
T Consensus        86 vD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~  165 (263)
T d1npea_          86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN  165 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT
T ss_pred             EeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec
Confidence            98766635556667789999999866543333333456899999998555555543323  3555566544433333333


Q ss_pred             ccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccc
Q 021121          192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA  271 (317)
Q Consensus       192 ~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  271 (317)
                      -.....+++++..+.++.+-...+.|...|+..... .....+... ..+|++.  +.++..+-...+.|...|..+++.
T Consensus       166 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            345678999884555556656678899999876432 233333333 3578775  343556655678888889887764


Q ss_pred             eeeeeecccceeEeEEEEec
Q 021121          272 LVGRYDHHTEFAVGVDMSVL  291 (317)
Q Consensus       272 ~~~~~~~~~~~v~~~~~~~~  291 (317)
                      .............++...++
T Consensus       242 ~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         242 MDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEECCSSCCCCCCEEEECS
T ss_pred             ceEECCCCCCCcceEEEeCC
Confidence            33333333445567766653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.9e-05  Score=58.78  Aligned_cols=227  Identities=9%  Similarity=0.014  Sum_probs=139.2

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCc-eeeccCCcceEEEEEe
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPI-RSLHEHTREVHSADYN  115 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~~~~~v~~~~~~  115 (317)
                      ..|+..+++...  ...+  ......+.+++|.+..+.+..+-...+.|.-.++......... .........+..+++.
T Consensus        10 ~~I~~~~l~~~~--~~~~--~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD   85 (266)
T d1ijqa1          10 HEVRKMTLDRSE--YTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (266)
T ss_dssp             SSEEEEETTSCC--CEEE--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CeEEEEECCCCc--ceee--eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence            368888987654  3333  2445567899999877545444445677777666532111122 2222333556778888


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEE-eCCCeEEEEeCCCCCceeeeccCccc
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSA-SGDCTLRIWDVREMGSTMIIPAHEFE  194 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (317)
                      +.+.++..+-...+.|.+.++........+......+..++..|..+.++.+. +..+.|.-.++............-..
T Consensus        86 ~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~  165 (266)
T d1ijqa1          86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  165 (266)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             eccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce
Confidence            76665666667778999999987765555555556789999999755555553 23456777777654433333333345


Q ss_pred             eEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeeecCCeEEEEeccccc
Q 021121          195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       195 v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      ...+++++..+++..+-...+.|...|+..... .......  .....++++.  +.+++.+-..++.|...+..+++
T Consensus       166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             eeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence            688999984555666656678899999876443 2222222  2234567776  33355555567778777766655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.64  E-value=2.2e-05  Score=59.72  Aligned_cols=227  Identities=11%  Similarity=0.051  Sum_probs=117.0

Q ss_pred             EecCC--CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEE-EEcCC-----CEEEEEEcCC
Q 021121           67 AWSES--HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFI-TSSWD-----DTVKLWTVDR  138 (317)
Q Consensus        67 ~~~~~--~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d-----g~v~iwd~~~  138 (317)
                      ..+|+  |+ .++.. .+|.|.+.|+..+    ....+..+.+.+...+|+|||+ .|+ +...+     ..|.+++..+
T Consensus         5 ~~sPdi~G~-~v~f~-~~~dl~~~d~~~g----~~~~Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGD-RIIFV-CCDDLWEHDLKSG----STRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETT-EEEEE-ETTEEEEEETTTC----CEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCC-EEEEE-eCCcEEEEECCCC----CEEEEecCCCcccCEEECCCCC-EEEEEEeeCCCCCceEEEEEEecC
Confidence            45788  86 44443 3567888888754    2344566777889999999998 555 43222     2477778777


Q ss_pred             CceeEEee------ccccceEEEEEecCCCCeEEEEeC------CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCc
Q 021121          139 PTSVRTFK------EHAYCVYNATWNPRHSDVFCSASG------DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC  206 (317)
Q Consensus       139 ~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~  206 (317)
                      ++..+...      ..........|+|+ ++.++....      ...+...+...+.....   .........+.+ .+.
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~  152 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFDPD-GNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFAD-GRR  152 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTT-CCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEET-TEE
T ss_pred             CceEEeeecCCCccCccccccccccCCC-CCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecC-CCe
Confidence            75543211      12234567889999 666655432      12344555544332221   112222233332 444


Q ss_pred             EEEEEecCC-----------cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecC--CeEEEEeccccccee
Q 021121          207 LIASASVDK-----------SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYD--MTVCLWDFMVEDALV  273 (317)
Q Consensus       207 ~l~~~~~d~-----------~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~  273 (317)
                      .++....+.           ...........  ...............++++.  ++.....+  ..|.++|+.+.+.  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~--  226 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGA--FKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDL--  226 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTE--EEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSC--
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccccc--eeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCce--
Confidence            444332211           11222222211  22222333444555666553  34434333  3577778776652  


Q ss_pred             eeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCCC
Q 021121          274 GRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDP  314 (317)
Q Consensus       274 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  314 (317)
                      ..+..+.. .....|+|++..++++  .++.|+++|+..++
T Consensus       227 ~~lt~~~~-~~~~~~SpDG~~I~f~--~~~~l~~~d~~~g~  264 (281)
T d1k32a2         227 RKHTSFTD-YYPRHLNTDGRRILFS--KGGSIYIFNPDTEK  264 (281)
T ss_dssp             EECCCCCS-SCEEEEEESSSCEEEE--ETTEEEEECTTTCC
T ss_pred             EEeecCCC-cccccCcCCCCEEEEE--eCCEEEEEECCCCC
Confidence            22222221 2234689995444443  36789999987653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.58  E-value=2.9e-05  Score=59.02  Aligned_cols=217  Identities=9%  Similarity=0.007  Sum_probs=106.9

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCC-----eEEEEEeCCCCCCCCceee----ccCC
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADG-----SVKIYDTALPPTANPIRSL----HEHT  106 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~----~~~~  106 (317)
                      +|.|.+.|+..+.  .+.+  ..+.+.+...+|||||..+.++...++     .|.+++...++. ..+...    ....
T Consensus        20 ~~dl~~~d~~~g~--~~~L--t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-~~lt~~~~~~~~~~   94 (281)
T d1k32a2          20 CDDLWEHDLKSGS--TRKI--VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRR   94 (281)
T ss_dssp             TTEEEEEETTTCC--EEEE--ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTE
T ss_pred             CCcEEEEECCCCC--EEEE--ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce-EEeeecCCCccCcc
Confidence            6689899998765  3333  356677889999999964444443333     355555544311 111110    1122


Q ss_pred             cceEEEEEecCCCCEEEEEcC------CCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCC--------
Q 021121          107 REVHSADYNPTRRDSFITSSW------DDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC--------  172 (317)
Q Consensus       107 ~~v~~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------  172 (317)
                      .......|+|+++ .++....      ...+...+...+.....   +...... .+.+++...++......        
T Consensus        95 ~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  169 (281)
T d1k32a2          95 MFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATH-ILFADGRRVIGRNTFELPHWKGYRG  169 (281)
T ss_dssp             ECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSE-EEEETTEEEEEESCSCCTTSTTCCS
T ss_pred             ccccccccCCCCC-EEEEEEccCCCccceeeeeecCCCceeEEe---cCCccce-eeecCCCeEEEeeccccceeeeecc
Confidence            3456788999998 5554322      22345555554433221   1121222 23334244443332211        


Q ss_pred             ---eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecC--CcEEEEEccCCCccEEEEecCCCceeEEEecCC
Q 021121          173 ---TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD--KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH  247 (317)
Q Consensus       173 ---~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (317)
                         ............ ..............+.+ + ..+.....+  ..|.++|+....  ...+..+. ......|+|+
T Consensus       170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~d~~g~~--~~~lt~~~-~~~~~~~SpD  243 (281)
T d1k32a2         170 GTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD--LRKHTSFT-DYYPRHLNTD  243 (281)
T ss_dssp             TTCCEEEEEEETTEE-EEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS--CEECCCCC-SSCEEEEEES
T ss_pred             CCcceeeeeccccce-eeccCCccccceeeeec-c-ccceecccccccceEEEeCCCCc--eEEeecCC-CcccccCcCC
Confidence               111111111111 11112222333444544 3 233333333  357777887654  33333222 2233468999


Q ss_pred             CCeeEEeeecCCeEEEEeccccc
Q 021121          248 RRNLLASCSYDMTVCLWDFMVED  270 (317)
Q Consensus       248 ~~~~l~~~~~d~~i~vwd~~~~~  270 (317)
                      |+.+++  ..++.|.++|+.+++
T Consensus       244 G~~I~f--~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         244 GRRILF--SKGGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCEEE--EETTEEEEECTTTCC
T ss_pred             CCEEEE--EeCCEEEEEECCCCC
Confidence            996444  346889999998876

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=5.6e-05  Score=57.03  Aligned_cols=226  Identities=6%  Similarity=-0.057  Sum_probs=139.2

Q ss_pred             CeEEEEEeCCCCCC--CCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecC
Q 021121           83 GSVKIYDTALPPTA--NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR  160 (317)
Q Consensus        83 g~i~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (317)
                      +.|+-.+++.....  .....+..+...+..++|.+..+.++.+-..++.|+..+++.......+......+.++++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            56877887643211  1122234445568889999877745555567788999998866555444444456889999877


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCc--EEEEEccCCCccEEEEecCCCc
Q 021121          161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS--IKIWDVRNYRVPIAVLNGHGYA  238 (317)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~  238 (317)
                      ++++..+-...+.|.+.++........+......+..++++|..+.++.+-...+.  |..-++..... .......-..
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~  168 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGL  168 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccc
Confidence            45566666778899999987655433333333567899999956655555433333  44445544332 3333333345


Q ss_pred             eeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCCC
Q 021121          239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       239 v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  313 (317)
                      ...+++++.++.+..+-...+.|...++.... ......+... ..+|++.  ++.+..+-...+.|...+....
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~-~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-RRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEE-EEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCC-eEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            67999998887655665567889999987654 2222333222 3567765  2445555556677777666543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=0.00028  Score=53.18  Aligned_cols=223  Identities=9%  Similarity=-0.002  Sum_probs=134.6

Q ss_pred             CeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCc----eeEEeeccccceEEEEEe
Q 021121           83 GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT----SVRTFKEHAYCVYNATWN  158 (317)
Q Consensus        83 g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~  158 (317)
                      ..|+-.+++..   . ...+......+.+++|.+..+.++.+-..++.|...++....    ....+......+..+++.
T Consensus        10 ~~I~~~~l~~~---~-~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD   85 (266)
T d1ijqa1          10 HEVRKMTLDRS---E-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (266)
T ss_dssp             SSEEEEETTSC---C-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CeEEEEECCCC---c-ceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence            35888888754   2 222223455678899998877344444567778777765422    112222233457788998


Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEe-cCCcEEEEEccCCCccEEEEecCCC
Q 021121          159 PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASAS-VDKSIKIWDVRNYRVPIAVLNGHGY  237 (317)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  237 (317)
                      +.++++..+-...+.|.+.++........+.........++.+|..+.++.+-. ..+.|...++..... .......-.
T Consensus        86 ~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~~~  164 (266)
T d1ijqa1          86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQ  164 (266)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCS
T ss_pred             eccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccccccc
Confidence            875677777777889999999866555545545566789999995555555532 234566666654332 223333335


Q ss_pred             ceeEEEecCCCCeeEEeeecCCeEEEEecccccce-eeeeecccceeEeEEEEeccCCeEEEeecCCcEEEEecCC
Q 021121          238 AVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM  312 (317)
Q Consensus       238 ~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  312 (317)
                      ....+++++.++.+..+-...+.|...++...... +...........++++..  +.++.+-..++.|...+...
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCC
Confidence            67899999988866666667788998898654422 111122222345677662  45555555667776666544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.10  E-value=0.0013  Score=52.31  Aligned_cols=256  Identities=7%  Similarity=-0.044  Sum_probs=126.8

Q ss_pred             eEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC-CeEEEEEeCCCCCCCCceeeccCCcceEEEEEec
Q 021121           38 RVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD-GSVKIYDTALPPTANPIRSLHEHTREVHSADYNP  116 (317)
Q Consensus        38 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  116 (317)
                      .+.+||...............+.......++.+++ .+++.|+.+ ..+.+||..+. .......+... ..-.+.+..+
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~~-~w~~~~~~~~~-r~~~~~~~~~  129 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVA-RGYQSSATMS  129 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGT-EEEECCCCSSC-CSSCEEEECT
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEecCccC-ccccccccccc-ccccceeeec
Confidence            46789998765322222222333334456788887 577777654 58999998764 22222222221 1223456677


Q ss_pred             CCCCEEEEEcCC------CEEEEEEcCCCceeEEeec----------ccc----ceEE-EEEecCCCCeEEEEeCCCeEE
Q 021121          117 TRRDSFITSSWD------DTVKLWTVDRPTSVRTFKE----------HAY----CVYN-ATWNPRHSDVFCSASGDCTLR  175 (317)
Q Consensus       117 ~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~----------~~~----~v~~-~~~~~~~~~~l~~~~~dg~i~  175 (317)
                      +++ +++.++.+      ..+.+||+.+.+-.. +..          +..    .-.. +...++ +.+++.+...+.+.
T Consensus       130 dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~g~~~~~~~  206 (387)
T d1k3ia3         130 DGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKK-GSVFQAGPSTAMNW  206 (387)
T ss_dssp             TSC-EEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGG-GCEEECCSSSEEEE
T ss_pred             CCc-eeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccceeeccceeEEEEeCC-CCEEEecCcCCcEE
Confidence            887 77777643      368999988764221 110          000    0011 112223 66676777777777


Q ss_pred             EEeCCCCCceeee--ccC------ccceEEEEecCCCCcEEEEEecCC--------cEEEEEccCCCccEEEEe-----c
Q 021121          176 IWDVREMGSTMII--PAH------EFEILACDWNKYDDCLIASASVDK--------SIKIWDVRNYRVPIAVLN-----G  234 (317)
Q Consensus       176 i~d~~~~~~~~~~--~~~------~~~v~~i~~~~~~~~~l~~~~~d~--------~i~v~d~~~~~~~~~~~~-----~  234 (317)
                      ++|..+.......  ...      ...-.++.+...++++++.|+...        ...+.+............     .
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  286 (387)
T d1k3ia3         207 YYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY  286 (387)
T ss_dssp             EECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS
T ss_pred             ecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccc
Confidence            7777665322111  000      011123333333677777776432        234444332221111111     1


Q ss_pred             CCCceeEEEecCCCCeeEEeeecC-----------CeEEEEecccccc-eeeeeecccceeEeEEEEeccCCeEEEeec
Q 021121          235 HGYAVRKVKFSPHRRNLLASCSYD-----------MTVCLWDFMVEDA-LVGRYDHHTEFAVGVDMSVLVEGLLASTGW  301 (317)
Q Consensus       235 ~~~~v~~~~~~~~~~~~l~~~~~d-----------~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  301 (317)
                      ....-.+....++++ +++.|+.+           .++.+||..+.+- .+..+...+..=......++ +++++.|+.
T Consensus       287 ~~r~~~~~~~~~dg~-i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~d-G~v~v~GG~  363 (387)
T d1k3ia3         287 FARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD-GRVFNGGGG  363 (387)
T ss_dssp             SCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTT-SCEEEEECC
T ss_pred             cccccceeeeccCCe-EEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCC-CEEEEEeCC
Confidence            111223456668888 78877743           1478899877651 11111100000011234566 788888873

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=0.00071  Score=53.51  Aligned_cols=190  Identities=15%  Similarity=0.070  Sum_probs=119.4

Q ss_pred             CCCCEEEEEcCCCEEEEEEcCCCceeEEeec-cccceEEEEEecCC-CCeEEEEeCC------------------CeEEE
Q 021121          117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKE-HAYCVYNATWNPRH-SDVFCSASGD------------------CTLRI  176 (317)
Q Consensus       117 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~d------------------g~i~i  176 (317)
                      ||+.+++.-..+.+|.+-|+++.+..+.... ....+..++..++. ..+++..+..                  +.+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            6775566666889999999999887664432 23446666665431 4455555542                  23677


Q ss_pred             EeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCC---------------cE-----------------------E
Q 021121          177 WDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK---------------SI-----------------------K  218 (317)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---------------~i-----------------------~  218 (317)
                      .|..+++...++.. ......+++++ +++++++.+.+.               .+                       .
T Consensus       178 ID~~tm~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            89888877666653 23456789999 888888776431               13                       3


Q ss_pred             EEEccCC--CccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccce-----------eeeeecccceeEe
Q 021121          219 IWDVRNY--RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-----------VGRYDHHTEFAVG  285 (317)
Q Consensus       219 v~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-----------~~~~~~~~~~v~~  285 (317)
                      +.|.+..  ...+..+... .....+..+|||+++++++..+.++.|+|++.-...           ....+ ..-.-..
T Consensus       256 VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLh  333 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH  333 (459)
T ss_dssp             EEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEE
T ss_pred             eecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccc
Confidence            3343321  1112222222 234678999999988888889999999999753211           11111 1223345


Q ss_pred             EEEEeccCCeEEEeecCCcEEEEecC
Q 021121          286 VDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       286 ~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      -+|+.. +....|---|..|.-|++.
T Consensus       334 t~fd~~-g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         334 TAFDGR-GNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEECTT-SEEEEEETTTTEEEEEEHH
T ss_pred             cccCCC-ceEEEEeeccceEEEEecc
Confidence            677765 5555566689999999984

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.06  E-value=0.0023  Score=53.70  Aligned_cols=167  Identities=7%  Similarity=-0.058  Sum_probs=92.7

Q ss_pred             CEEEEEEcCCCceeEEeecccc---------ceEEEEEecCCC--CeEEEEeCCCeEEEEeCCCCCceeeeccCc-----
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAY---------CVYNATWNPRHS--DVFCSASGDCTLRIWDVREMGSTMIIPAHE-----  192 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  192 (317)
                      ..+...|+++++.+..++....         +........++.  ..++..+.+|.++++|..+++.+...+...     
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            5788889999998887764321         112222222312  256788899999999999988764321100     


Q ss_pred             --------cc--------------------------eEEEEecCCCCcEEEEEecC------------------------
Q 021121          193 --------FE--------------------------ILACDWNKYDDCLIASASVD------------------------  214 (317)
Q Consensus       193 --------~~--------------------------v~~i~~~~~~~~~l~~~~~d------------------------  214 (317)
                              .+                          -...+++| +..+++....+                        
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECC-CCceEEEeccccccccccccccccCCcccccccee
Confidence                    00                          01245666 44444443322                        


Q ss_pred             -------------CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccc
Q 021121          215 -------------KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE  281 (317)
Q Consensus       215 -------------~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  281 (317)
                                   |.|.-+|+++++..-+.....  +..+-..+-.+. ++++|+.||.++.+|.++++.+-+.-.+...
T Consensus       431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             eccccCCcccCCcccEEEeccCCCceeeEcCCCC--CCCcceeEecCC-EEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                         346666666665422222111  111111121344 6788999999999999999855443333222


Q ss_pred             eeEeEEEEeccCCeEEEe
Q 021121          282 FAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~  299 (317)
                      .-.-+.+..++.++++..
T Consensus       508 ~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             eecceEEEECCEEEEEEE
Confidence            223366677755666553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.92  E-value=0.0041  Score=52.03  Aligned_cols=182  Identities=8%  Similarity=-0.028  Sum_probs=102.3

Q ss_pred             CEEEEEEcCCCceeEEeeccccce-----------EEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCcc----
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAYCV-----------YNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF----  193 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----  193 (317)
                      ..|.-.|+++++....++.....+           ..+.........++.++.+|.++++|..+++.+...+....    
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            467788999998877665422211           22222211124677789999999999999887654321100    


Q ss_pred             --------------------------------ceEEEEecCCCCcEEEEEec----------------------------
Q 021121          194 --------------------------------EILACDWNKYDDCLIASASV----------------------------  213 (317)
Q Consensus       194 --------------------------------~v~~i~~~~~~~~~l~~~~~----------------------------  213 (317)
                                                      .-...+++| +..++.....                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccC-CCCeeecccccccceeeccccccccccccccccCcccc
Confidence                                            001344566 4444443321                            


Q ss_pred             --------CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEe
Q 021121          214 --------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVG  285 (317)
Q Consensus       214 --------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~  285 (317)
                              .|.+.-+|+.+++. +-... ...+..+-.+.-.+. ++++|+.||.++.+|.++++.+-..-.+....-.-
T Consensus       429 ~~~p~~~~~G~l~A~D~~tGk~-~W~~~-~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P  505 (560)
T d1kv9a2         429 TDVPAAVVSGALLAWDPVKQKA-AWKVP-YPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP  505 (560)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             cCCCCcccccceEEEeCCCCeE-eeecc-CCCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEECCCCccccC
Confidence                    24567777777664 22222 111222212222344 78889999999999999998554333322222223


Q ss_pred             EEEEeccCCeEEEeec--------------------CCcEEEEecCCCC
Q 021121          286 VDMSVLVEGLLASTGW--------------------DELVYVWQQGMDP  314 (317)
Q Consensus       286 ~~~~~~~~~~l~s~~~--------------------dg~i~~w~~~~~~  314 (317)
                      +.+..++.++|+....                    .+.|.+|.|..+.
T Consensus       506 ~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~  554 (560)
T d1kv9a2         506 MTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKA  554 (560)
T ss_dssp             EEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCC
T ss_pred             EEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCC
Confidence            5666775556654332                    2468888887653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.80  E-value=0.00039  Score=54.99  Aligned_cols=190  Identities=12%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCC-CeEEEEEcCC---------------
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHD-SLLIAAVADG---------------   83 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg---------------   83 (317)
                      +++++......     +++|-+.|++..+  ...+........+..+...++++ .+++.++...               
T Consensus        98 DGrylFVNDka-----n~RVAvIdl~~fk--t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~  170 (459)
T d1fwxa2          98 DGRFLFMNDKA-----NTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  170 (459)
T ss_dssp             EEEEEEEEETT-----TTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-
T ss_pred             ceeEEEEEcCC-----CceEEEEECccee--eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhh
Confidence            68888887763     8899999998765  33344455666777777655432 3666655532               


Q ss_pred             ---eEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCC---------------CEEEEEEc---------
Q 021121           84 ---SVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD---------------DTVKLWTV---------  136 (317)
Q Consensus        84 ---~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~iwd~---------  136 (317)
                         .+.+.|.++.   +....... .+....+.++++|+ ++++.+.+               ..+.+++.         
T Consensus       171 y~~~~t~ID~~tm---~V~~QV~V-~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         171 YVNVFTAVDADKW---EVAWQVLV-SGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEEEEEEEETTTT---EEEEEEEE-SSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             cceEEEEEecCCc---eEEEEeee-CCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence               2556676543   22222221 23455788999998 55554432               12333333         


Q ss_pred             --------------CCC---ceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce--------e---ee
Q 021121          137 --------------DRP---TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST--------M---II  188 (317)
Q Consensus       137 --------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~---~~  188 (317)
                                    +..   ..++.+. -......+..+|++..+++++..+.++.++|++.....        .   .-
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                          211   1122222 22346788999995555556667999999999742111        1   11


Q ss_pred             ccCccceEEEEecCCCCcEEEEEecCCcEEEEEcc
Q 021121          189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       189 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      ..........+|+. .++...+---|..|.-|++.
T Consensus       325 ~elglgPLht~fd~-~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         325 PELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHH
T ss_pred             cccCcCccccccCC-CceEEEEeeccceEEEEecc
Confidence            11233456778888 78777777789999999985

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.68  E-value=0.011  Score=49.57  Aligned_cols=68  Identities=12%  Similarity=0.006  Sum_probs=41.5

Q ss_pred             CCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeec----------------CCcEEEEec
Q 021121          247 HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGW----------------DELVYVWQQ  310 (317)
Q Consensus       247 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----------------dg~i~~w~~  310 (317)
                      .+. ++++|+.||.++.+|.++++.+-..-.+....-.-+.+..++.++++..+.                .+.|.+|.|
T Consensus       487 agg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l  565 (573)
T d1kb0a2         487 AGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVV  565 (573)
T ss_dssp             TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred             cCC-EEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEe
Confidence            455 788899999999999999985533222211111125566674455443321                246888888


Q ss_pred             CCCCC
Q 021121          311 GMDPR  315 (317)
Q Consensus       311 ~~~~~  315 (317)
                      +.+.+
T Consensus       566 ~g~~~  570 (573)
T d1kb0a2         566 GGKAR  570 (573)
T ss_dssp             TCBCC
T ss_pred             CCcCC
Confidence            76543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.012  Score=43.94  Aligned_cols=231  Identities=15%  Similarity=0.195  Sum_probs=142.3

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYD   89 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~   89 (317)
                      ..+.-.+|  ...+++--+       ...+++||++...    .+..+...+.|.-=.|-.+  ..|+..+ +..|.-|+
T Consensus        65 AdsAIMhP--~~~IiALra-------g~~LQiFnletK~----klks~~~~e~VvfWkWis~--~~L~lVT-~taVYHW~  128 (327)
T d1utca2          65 ADSAIMNP--ASKVIALKA-------GKTLQIFNIEMKS----KMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWS  128 (327)
T ss_dssp             CSEEEECS--SSSEEEEEE-------TTEEEEEETTTTE----EEEEEECSSCCCEEEESSS--SEEEEEC-SSEEEEEE
T ss_pred             hhhhhcCC--CCcEEEEec-------CCeEEEEehhHhh----hhceEEcCCCcEEEEecCC--CEEEEEc-CCceEEEc
Confidence            33556778  344444433       3489999998764    5666677788988889865  3666665 45799999


Q ss_pred             eCCCCCCCCceeeccCC----cceEEEEEecCCCCEEEEE--c----CCCEEEEEEcCCCceeEEeeccccceEEEEEec
Q 021121           90 TALPPTANPIRSLHEHT----REVHSADYNPTRRDSFITS--S----WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP  159 (317)
Q Consensus        90 ~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~--~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (317)
                      ++..  ..+.+.+..|.    ..|..-..+++.+-++++|  .    -.|.+.+|..+. +..+.+.+|.+....+....
T Consensus       129 ~~g~--s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g  205 (327)
T d1utca2         129 MEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEG  205 (327)
T ss_dssp             SSSS--CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTT
T ss_pred             ccCC--CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCC
Confidence            9643  34565555443    3566666777777444444  1    237788998874 45566777776655554432


Q ss_pred             C--CCCeEEEE---eCCCeEEEEeCCCCCc-eee-------e--c--cCccceEEEEecCCCCcEEEEEecCCcEEEEEc
Q 021121          160 R--HSDVFCSA---SGDCTLRIWDVREMGS-TMI-------I--P--AHEFEILACDWNKYDDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       160 ~--~~~~l~~~---~~dg~i~i~d~~~~~~-~~~-------~--~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~  222 (317)
                      +  ...+++.+   ...+++++.++..... ...       +  +  ....-..++..++ .-.++..-+.-|.|++||+
T Consensus       206 ~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDl  284 (327)
T d1utca2         206 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDL  284 (327)
T ss_dssp             CSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEET
T ss_pred             CCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEc
Confidence            2  11233333   2236899998865321 111       1  1  1123356788888 6778888889999999999


Q ss_pred             cCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEE
Q 021121          223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC  262 (317)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  262 (317)
                      .++.. +..-+-....|...+-+..... +++...+|.|.
T Consensus       285 eTgt~-i~~nRIs~~~iF~~a~~~~~~G-i~~VNr~GqVl  322 (327)
T d1utca2         285 ETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQVL  322 (327)
T ss_dssp             TTCCE-EEEEECCSSCEEEEEEETTTTE-EEEEETTSEEE
T ss_pred             ccccE-EEEeecCCCceEEeccCCCCce-EEEECCCCeEE
Confidence            99875 5555545556654444444433 44455666654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.42  E-value=0.025  Score=47.27  Aligned_cols=147  Identities=10%  Similarity=0.029  Sum_probs=83.4

Q ss_pred             eEEEEEcCCeEEEEEeCCCCCCCCceeecc---C-CcceEEEEEecCCCCEEEEEc------CCCEEEEEEcCCCceeEE
Q 021121           75 LLIAAVADGSVKIYDTALPPTANPIRSLHE---H-TREVHSADYNPTRRDSFITSS------WDDTVKLWTVDRPTSVRT  144 (317)
Q Consensus        75 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~  144 (317)
                      .++.++.+|.+.-.|.+++   +.......   + ...++.--.-.++  .++.+.      .+|.|.-+|+++++.+.+
T Consensus       117 ~i~~~~~~g~l~alda~tG---~~~w~~~~~~~~~~~~~t~~p~v~~~--~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTG---KINWEVEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEEEECTTSEEEEEETTTC---CEEEEEECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             eEEEEeCCCcEEeeehhhh---hhhccccccccccccceeecCeEeCC--eEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            6777888998888888776   33322211   0 1111111111122  455554      368999999999998877


Q ss_pred             eeccc-------------------------------------cce-EEEEEecCCCCeEEEEeC----------------
Q 021121          145 FKEHA-------------------------------------YCV-YNATWNPRHSDVFCSASG----------------  170 (317)
Q Consensus       145 ~~~~~-------------------------------------~~v-~~~~~~~~~~~~l~~~~~----------------  170 (317)
                      +....                                     ..+ ...++.+. ..+++.+..                
T Consensus       192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~-~g~~y~~tg~~~p~~~~~r~g~n~~  270 (571)
T d2ad6a1         192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchh-cCeeeeecccccCcccccccccccc
Confidence            64211                                     111 22455565 455554443                


Q ss_pred             CCeEEEEeCCCCCceeeeccCccce-----------EEEEecCCCCcEEEEEecCCcEEEEEccCCCc
Q 021121          171 DCTLRIWDVREMGSTMIIPAHEFEI-----------LACDWNKYDDCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       171 dg~i~i~d~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                      ...+.-.|.++++.+-.++.....+           ..+.........++.++.+|.++++|..+++.
T Consensus       271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence            3467778999998877665322211           12222211113567788899999999887763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.32  E-value=0.034  Score=46.67  Aligned_cols=166  Identities=8%  Similarity=-0.064  Sum_probs=90.9

Q ss_pred             CEEEEEEcCCCceeEEeecccc---------ceEEEEE-ecCC--CCeEEEEeCCCeEEEEeCCCCCceeeeccCc----
Q 021121          129 DTVKLWTVDRPTSVRTFKEHAY---------CVYNATW-NPRH--SDVFCSASGDCTLRIWDVREMGSTMIIPAHE----  192 (317)
Q Consensus       129 g~v~iwd~~~~~~~~~~~~~~~---------~v~~~~~-~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  192 (317)
                      ..|...|+++++....++....         .+.-+.. ..++  ...++....+|.+.++|..+++.+...+...    
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            4688889999998887763211         1222222 1221  2367788999999999999988764322100    


Q ss_pred             ---------cc--------------------------eEEEEecCCCCcEEEEEec------------------------
Q 021121          193 ---------FE--------------------------ILACDWNKYDDCLIASASV------------------------  213 (317)
Q Consensus       193 ---------~~--------------------------v~~i~~~~~~~~~l~~~~~------------------------  213 (317)
                               .+                          -...+++| ...++.....                        
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp-~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCC-CCceEEeccccccccccccccccccccccccccc
Confidence                     00                          01234555 3333333221                        


Q ss_pred             ---------------CCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeec
Q 021121          214 ---------------DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH  278 (317)
Q Consensus       214 ---------------d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  278 (317)
                                     -|.|.-||+.+++..-+...  ..+..+-.++-.+. +++.|+.||.++.+|.++++.+-+.-..
T Consensus       437 ~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccccCcccCcccCCCcceEEEEeCCCCceecccCC--CCCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEEECC
Confidence                           13566667766654222211  12222222233455 7778999999999999999855433222


Q ss_pred             ccceeEeEEEEeccCCeEEE
Q 021121          279 HTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       279 ~~~~v~~~~~~~~~~~~l~s  298 (317)
                      ....-.-+.+..++.++++.
T Consensus       514 ~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         514 SGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             SCCCSCCEEEEETTEEEEEE
T ss_pred             CCcccCCeEEEECCEEEEEE
Confidence            22222335566675556654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.15  E-value=0.035  Score=43.50  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=114.2

Q ss_pred             EEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcC------CeE
Q 021121           12 SVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVAD------GSV   85 (317)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i   85 (317)
                      +..+.+  ++++++.++..     ...+.+||.....  ............-...+..+++ .+++.|+.+      ..+
T Consensus        80 ~~~~~~--~g~i~v~Gg~~-----~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v  149 (387)
T d1k3ia3          80 GISMDG--NGQIVVTGGND-----AKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNG  149 (387)
T ss_dssp             EEEECT--TSCEEEECSSS-----TTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred             EEEEec--CCcEEEeecCC-----CcceeEecCccCc--ccccccccccccccceeeecCC-ceeeecccccccccccee
Confidence            455666  67777776642     4689999987654  2333333333334556777787 577777643      358


Q ss_pred             EEEEeCCCCCCCCcee-------eccCCc-----ceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee--cc---
Q 021121           86 KIYDTALPPTANPIRS-------LHEHTR-----EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK--EH---  148 (317)
Q Consensus        86 ~v~~~~~~~~~~~~~~-------~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~---  148 (317)
                      .+||..+. ....+..       ...+..     .-..+...+++. .+..+..++.+.+++..+......-.  ..   
T Consensus       150 ~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (387)
T d1k3ia3         150 EVYSPSSK-TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV  227 (387)
T ss_dssp             EEEETTTT-EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred             eeecCCCC-ceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCccc
Confidence            89997754 1111100       000100     001122234555 67777777778888877654322111  00   


Q ss_pred             ---ccceEEEEEecCCCCeEEEEeCCC--------eEEEEeCCCCCc---eee-ec--cCccceEEEEecCCCCcEEEEE
Q 021121          149 ---AYCVYNATWNPRHSDVFCSASGDC--------TLRIWDVREMGS---TMI-IP--AHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       149 ---~~~v~~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~---~~~-~~--~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                         ...-.++.+...++++++.|+...        ...+.++.....   ... ..  .....-.+....+ ++++++.|
T Consensus       228 ~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-dg~i~v~G  306 (387)
T d1k3ia3         228 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITG  306 (387)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEEC
T ss_pred             CcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeecc-CCeEEEEC
Confidence               011123334333366666665321        233333332111   111 11  0111123445556 88899988


Q ss_pred             ecCC-----------cEEEEEccCCCccEEEEecCC--C-ceeEEEecCCCCeeEEeeec
Q 021121          212 SVDK-----------SIKIWDVRNYRVPIAVLNGHG--Y-AVRKVKFSPHRRNLLASCSY  257 (317)
Q Consensus       212 ~~d~-----------~i~v~d~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~~~~~  257 (317)
                      +.+.           .+.+||..+.+  -..+....  . .-....+.++|+ +++.|+.
T Consensus       307 G~~~~~~~~~~~~~~~ve~Ydp~~~~--W~~~~~~~~~R~~Hs~a~l~~dG~-v~v~GG~  363 (387)
T d1k3ia3         307 GQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  363 (387)
T ss_dssp             CBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             CcccCccCCCCcEeceEEEEECCCCe--EEECCCCCCcccceEEEEECCCCE-EEEEeCC
Confidence            8532           47889987653  22222111  1 112334578888 6777763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.02  E-value=0.013  Score=48.88  Aligned_cols=84  Identities=11%  Similarity=0.121  Sum_probs=50.7

Q ss_pred             CeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCCe
Q 021121          172 CTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRRN  250 (317)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  250 (317)
                      |.|.-+|+.+++.+-.... ..+..+-...- .+.++++|+.||.++.||.++++. +-.+.. ....-.-+.|..+|+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~-LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcE-eEEEECCCCccccCEEEEECCEE
Confidence            5677788888877665542 12221111222 456788899999999999999986 444432 2111122556668877


Q ss_pred             eEEeeecC
Q 021121          251 LLASCSYD  258 (317)
Q Consensus       251 ~l~~~~~d  258 (317)
                      +|+..+..
T Consensus       515 yv~v~aG~  522 (560)
T d1kv9a2         515 YVAIMAGW  522 (560)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            76654433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.94  E-value=0.053  Score=41.91  Aligned_cols=197  Identities=12%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             CCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecC----CCC-CeEEEEEcC----CeEEEEEe
Q 021121           20 ESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSE----SHD-SLLIAAVAD----GSVKIYDT   90 (317)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~-~~l~~~~~d----g~i~v~~~   90 (317)
                      ...++.++..      ++-|++||++...     +... ..+.++.+..-.    .+. .-+++++..    ..|.+|.+
T Consensus        39 ~~SlI~gTdK------~~Gl~vYdL~G~~-----l~~~-~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          39 QNSKLITTNK------KSGLAVYSLEGKM-----LHSY-HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             GGCEEEEEET------TSCCEEEETTCCE-----EEEC-CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             CccEEEEEcC------cCCEEEEcCCCcE-----EEec-ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence            4667777765      5569999996432     2221 234555554331    111 234555532    36888887


Q ss_pred             CCCCCCCCceeecc-------CCcceEEEEE--ecC-CCCEEEEEcCCCEEEEEEcCC---C----ceeEEeeccccceE
Q 021121           91 ALPPTANPIRSLHE-------HTREVHSADY--NPT-RRDSFITSSWDDTVKLWTVDR---P----TSVRTFKEHAYCVY  153 (317)
Q Consensus        91 ~~~~~~~~~~~~~~-------~~~~v~~~~~--~~~-~~~~l~~~~~dg~v~iwd~~~---~----~~~~~~~~~~~~v~  153 (317)
                      ....  ..+..+..       ....+..+|+  ++. +..++++...+|.+..|.+..   +    +.++.+. ....+.
T Consensus       107 d~~~--~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~E  183 (353)
T d1h6la_         107 DGKN--GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTE  183 (353)
T ss_dssp             ETTT--TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEE
T ss_pred             cCcc--cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccc
Confidence            6321  11221111       1234667777  554 433567778899999887732   2    2334444 345688


Q ss_pred             EEEEecCCCCeEEEEeCCCeEEEEeCCCC--Cceee---ec--cCccceEEEEecC---CCCcEEEEEecCCcEEEEEcc
Q 021121          154 NATWNPRHSDVFCSASGDCTLRIWDVREM--GSTMI---IP--AHEFEILACDWNK---YDDCLIASASVDKSIKIWDVR  223 (317)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~---~~--~~~~~v~~i~~~~---~~~~~l~~~~~d~~i~v~d~~  223 (317)
                      .+.+.+. ...|+.+-++.-+..++....  .....   ..  .....+-.++.-.   .++-+|++.-.+++..+||.+
T Consensus       184 GCVvDde-~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         184 GMAADDE-YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             EEEEETT-TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEeCC-CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            9999988 677778888777777765422  11111   11  1234455555432   134455555567889999988


Q ss_pred             CCCccEEEE
Q 021121          224 NYRVPIAVL  232 (317)
Q Consensus       224 ~~~~~~~~~  232 (317)
                      .....+..+
T Consensus       263 ~~~~~~g~F  271 (353)
T d1h6la_         263 GQNKYVADF  271 (353)
T ss_dssp             TTCCEEEEE
T ss_pred             CCccccceE
Confidence            754444444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.90  E-value=0.091  Score=44.01  Aligned_cols=147  Identities=10%  Similarity=0.083  Sum_probs=84.9

Q ss_pred             CeEEEEEcCCeEEEEEeCCCCCCCCceeecc---CC-cceEE-EEEecCCCCEEEEEcC------CCEEEEEEcCCCcee
Q 021121           74 SLLIAAVADGSVKIYDTALPPTANPIRSLHE---HT-REVHS-ADYNPTRRDSFITSSW------DDTVKLWTVDRPTSV  142 (317)
Q Consensus        74 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~~-~~v~~-~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~  142 (317)
                      .+++.++.|+.|.-.|.+++   +.+..+..   +. ..++. -.+. + . .++.+..      .|.|+-+|+++++.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG---~~~w~~~~~d~~~~~~~t~~P~v~-~-~-~vivg~~~~e~~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETG---ETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTC---CEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             eEEEEEeCCCCeEeeccccC---ceeccccccccccccccccCCcEE-C-C-eEEEeeccccccccCceEEEECCCCcEE
Confidence            36888888999988888776   44443321   11 11111 1111 1 2 5666543      489999999999998


Q ss_pred             EEeeccc-------------------------------------c-ceEEEEEecCCCCeEEEEeC--------------
Q 021121          143 RTFKEHA-------------------------------------Y-CVYNATWNPRHSDVFCSASG--------------  170 (317)
Q Consensus       143 ~~~~~~~-------------------------------------~-~v~~~~~~~~~~~~l~~~~~--------------  170 (317)
                      -++....                                     . .-..+++.+. ..++..+..              
T Consensus       196 W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~-~~lvy~~tg~~~p~~~~~r~g~n  274 (596)
T d1w6sa_         196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDN  274 (596)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccC-CCeeecccccccccccccccccc
Confidence            7764210                                     0 0123455665 555555432              


Q ss_pred             --CCeEEEEeCCCCCceeeeccCcc---------ceEEEEecCCC---CcEEEEEecCCcEEEEEccCCCc
Q 021121          171 --DCTLRIWDVREMGSTMIIPAHEF---------EILACDWNKYD---DCLIASASVDKSIKIWDVRNYRV  227 (317)
Q Consensus       171 --dg~i~i~d~~~~~~~~~~~~~~~---------~v~~i~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~  227 (317)
                        ...|.-.|+++++.+-.++....         ...-+..-..+   ...++....+|.+.++|..+++.
T Consensus       275 ~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~  345 (596)
T d1w6sa_         275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (596)
T ss_dssp             TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence              24577789999988776542211         11111111112   24677788899999999888763

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.89  E-value=0.042  Score=45.87  Aligned_cols=81  Identities=6%  Similarity=0.025  Sum_probs=46.5

Q ss_pred             eEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCC-ceeEEEecCCCCee
Q 021121          173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-AVRKVKFSPHRRNL  251 (317)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  251 (317)
                      .+.-||+.+++.+-..+... +...=...- .+.++++|+.|+.++.||.++++. +..+..... .-.-+.|..+|+.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCEEE
Confidence            45566666666655544221 111111111 566888899999999999999986 544442211 11125555678766


Q ss_pred             EEeee
Q 021121          252 LASCS  256 (317)
Q Consensus       252 l~~~~  256 (317)
                      ++..+
T Consensus       535 v~v~~  539 (573)
T d1kb0a2         535 VSVAV  539 (573)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.88  E-value=0.019  Score=48.15  Aligned_cols=81  Identities=12%  Similarity=-0.023  Sum_probs=48.9

Q ss_pred             CcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCC
Q 021121          215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG  294 (317)
Q Consensus       215 ~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  294 (317)
                      |.|.-+|+.+++. .-....+ .++..-..+..+. ++++|+.||.++.+|.++++.+-..-.+....-.-|.+..++.+
T Consensus       466 G~l~AiD~~TG~i-~W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcE-EeecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            5688888888765 3333322 2232222333455 77889999999999999998654333332222223677777555


Q ss_pred             eEEE
Q 021121          295 LLAS  298 (317)
Q Consensus       295 ~l~s  298 (317)
                      +++.
T Consensus       543 Yv~i  546 (582)
T d1flga_         543 YLGV  546 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.45  E-value=0.11  Score=38.87  Aligned_cols=252  Identities=10%  Similarity=0.132  Sum_probs=151.0

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ...|.|.|+.......+.    ..  .--+.-.+|.. +.||.-+ ..+++++|++..   ..++...- .++|.-=.|-
T Consensus        44 ~~~VvIidl~n~~~~~Rr----pi--~AdsAIMhP~~-~IiALra-g~~LQiFnletK---~klks~~~-~e~VvfWkWi  111 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRR----PI--SADSAIMNPAS-KVIALKA-GKTLQIFNIEMK---SKMKAHTM-TDDVTFWKWI  111 (327)
T ss_dssp             EEEEEEEETTSTTSCEEE----EC--CCSEEEECSSS-SEEEEEE-TTEEEEEETTTT---EEEEEEEC-SSCCCEEEES
T ss_pred             CceEEEEECCCCCcceec----cc--chhhhhcCCCC-cEEEEec-CCeEEEEehhHh---hhhceEEc-CCCcEEEEec
Confidence            458999999866532211    11  12234567875 5777665 568999999876   45554443 4566556676


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCC-ceeEEeeccc----cceEEEEEecCCCCeEEEEe-------CCCeEEEEeCCCCC
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRP-TSVRTFKEHA----YCVYNATWNPRHSDVFCSAS-------GDCTLRIWDVREMG  183 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~  183 (317)
                      .+.  .|+-.+ +..|+-|+++.. ++.+.+..|.    ..|..-..+++ .+.++..+       -.|.+.+|..+. +
T Consensus       112 s~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~-~kW~~l~GI~~~~~~i~G~mQLYS~er-~  186 (327)
T d1utca2         112 SLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDR-K  186 (327)
T ss_dssp             SSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT-SCEEEEEEEEEETTEEEEEEEEEETTT-T
T ss_pred             CCC--EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCC-CCEEEEEeEecCCCceeEEEEEEEecc-C
Confidence            543  455555 458999999543 4555565443    45777777777 45443322       246788999764 4


Q ss_pred             ceeeeccCccceEEEEecCC--CCcEEEEEe---cCCcEEEEEccCCC---ccE--EEE---e---cCCCceeEEEecCC
Q 021121          184 STMIIPAHEFEILACDWNKY--DDCLIASAS---VDKSIKIWDVRNYR---VPI--AVL---N---GHGYAVRKVKFSPH  247 (317)
Q Consensus       184 ~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~---~d~~i~v~d~~~~~---~~~--~~~---~---~~~~~v~~~~~~~~  247 (317)
                      ..+.+.+|......+...-.  ..++++.+.   ..+.+++.++....   .+.  +..   -   ....-.-++..++.
T Consensus       187 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k  266 (327)
T d1utca2         187 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  266 (327)
T ss_dssp             EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT
T ss_pred             cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeecc
Confidence            45667777766655554321  123343332   23578888886532   111  111   1   11233457888887


Q ss_pred             CCeeEEeeecCCeEEEEecccccceeeeeecccceeEeEEEEeccCCeEEEeecCCcEEE
Q 021121          248 RRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYV  307 (317)
Q Consensus       248 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~  307 (317)
                      .. ++..-+.-|.|++||++++.. +..-+-....|...+-... ..=+++...+|.|.-
T Consensus       267 yg-iiyviTK~G~i~lyDleTgt~-i~~nRIs~~~iF~~a~~~~-~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         267 HD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEA-TAGIIGVNRKGQVLS  323 (327)
T ss_dssp             TT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETT-TTEEEEEETTSEEEE
T ss_pred             CC-EEEEEecCcEEEEEEcccccE-EEEeecCCCceEEeccCCC-CceEEEECCCCeEEE
Confidence            77 788889999999999999974 3444444555654444443 344555567777653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.10  E-value=0.2  Score=38.52  Aligned_cols=186  Identities=8%  Similarity=0.049  Sum_probs=100.7

Q ss_pred             eEEEEEecCCCCEEEEEc------------CCCEEEEEEcCCCceeE-Eee--cc-----ccceEEEEE--ecCCCCeEE
Q 021121          109 VHSADYNPTRRDSFITSS------------WDDTVKLWTVDRPTSVR-TFK--EH-----AYCVYNATW--NPRHSDVFC  166 (317)
Q Consensus       109 v~~~~~~~~~~~~l~~~~------------~dg~v~iwd~~~~~~~~-~~~--~~-----~~~v~~~~~--~~~~~~~l~  166 (317)
                      ...|...|++. .+++++            ..|.|.++|+++.+... .+.  ..     .-....+..  .+++..+|+
T Consensus        37 ~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34567777776 444432            14899999997654322 221  11     123455554  333222444


Q ss_pred             EE---eCCCeEEEEeCCCCCceee----ec-cCccceEEEEecCCCCcEEEEEe--c-------------CCcEEEEEcc
Q 021121          167 SA---SGDCTLRIWDVREMGSTMI----IP-AHEFEILACDWNKYDDCLIASAS--V-------------DKSIKIWDVR  223 (317)
Q Consensus       167 ~~---~~dg~i~i~d~~~~~~~~~----~~-~~~~~v~~i~~~~~~~~~l~~~~--~-------------d~~i~v~d~~  223 (317)
                      +.   ....+|.+|++........    +. ......+.++... ++.+++|-.  .             -+.-.+|...
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            44   2456788888865433221    21 1223467888877 777877731  1             1223444443


Q ss_pred             CCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee-eecccceeEeEEEEeccCCeEEE
Q 021121          224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-YDHHTEFAVGVDMSVLVEGLLAS  298 (317)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s  298 (317)
                      ..+  .......-...+.|+++|+++.++++-...+.|++|++......... ...-....-.+.+.+.++.+.++
T Consensus       195 ~~~--~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         195 PND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SSC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CCc--eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            332  22222223457899999999977788888899999998755422111 11223445566666542344333

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.98  E-value=0.27  Score=39.08  Aligned_cols=243  Identities=11%  Similarity=0.049  Sum_probs=124.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCC----eEEEEEeCCCCCCCCce-eeccCCcceEEEEEecCCCCEEEEEc-----------
Q 021121           63 VYDLAWSESHDSLLIAAVADG----SVKIYDTALPPTANPIR-SLHEHTREVHSADYNPTRRDSFITSS-----------  126 (317)
Q Consensus        63 v~~~~~~~~~~~~l~~~~~dg----~i~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~-----------  126 (317)
                      +...+++|+++.++++-+.+|    .++++|+.++   +.+. .+.  ......+.|.+++..++.+.-           
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg---~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcc---eecccccc--cccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            456678999864554545454    6999999876   3322 111  112246789999884444431           


Q ss_pred             ----CCCEEEEEEcCCCcee--EEeecc--ccceEEEEEecCCCCeEEE-Ee--CCCe--EEEEeCCCCCc--------e
Q 021121          127 ----WDDTVKLWTVDRPTSV--RTFKEH--AYCVYNATWNPRHSDVFCS-AS--GDCT--LRIWDVREMGS--------T  185 (317)
Q Consensus       127 ----~dg~v~iwd~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~~l~~-~~--~dg~--i~i~d~~~~~~--------~  185 (317)
                          ....|..+.+.+....  ..+...  ...+..+..+++ +++++. ..  .+..  +.+.|+.....        .
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d-~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCC-cceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                1236888888776332  233322  234566777877 555543 22  2233  44555543211        1


Q ss_pred             eeeccCccceEEEEecCCCCcEEEEEec---CCcEEEEEccCCCcc-EEE-EecCCCceeEEEecCCCCeeEEeeecCCe
Q 021121          186 MIIPAHEFEILACDWNKYDDCLIASASV---DKSIKIWDVRNYRVP-IAV-LNGHGYAVRKVKFSPHRRNLLASCSYDMT  260 (317)
Q Consensus       186 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  260 (317)
                      ...........-+.. . ++.+++....   ++.|...++...... ... +..+...+..-.+...+.++++..-.++.
T Consensus       281 ~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         281 KLIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             EeecccccceEEEec-C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            112222222222222 2 3334443332   356666777654321 233 33344445443444444545555556654


Q ss_pred             --EEEEecccccceeeeeecccceeEeEEEEeccCCeEEEee---cCCcEEEEecCCCC
Q 021121          261 --VCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTG---WDELVYVWQQGMDP  314 (317)
Q Consensus       261 --i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~  314 (317)
                        |++++..+++. ........+.+..+...+....+.++.+   .-.++.-+|+.++.
T Consensus       359 ~~l~v~~~~~~~~-~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         359 NTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eEEEEEECCCCcE-EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence              78899887653 3333333455655555454333444433   24678888887653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.96  E-value=0.078  Score=44.30  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=53.4

Q ss_pred             CCeEEEEeCCCCCceeeeccCccceEEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEec-CCCceeEEEecCCCC
Q 021121          171 DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG-HGYAVRKVKFSPHRR  249 (317)
Q Consensus       171 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  249 (317)
                      .|.|.-+|+.+++.+-+.+.. .++..-..+. .+.++++|+.||.++.+|.++++. +..+.- ....-.-+.|..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCE
Confidence            467888999999887776533 2222212222 566888899999999999999986 544432 222222366777887


Q ss_pred             eeEEee
Q 021121          250 NLLASC  255 (317)
Q Consensus       250 ~~l~~~  255 (317)
                      .+++..
T Consensus       542 qYv~i~  547 (582)
T d1flga_         542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.27  Score=36.34  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             CCcEEEEEecC-----CcEEEEEccCCCccEEEEecC--CCceeEEEecCCCCeeEEeeecCC-----eEEEEecccccc
Q 021121          204 DDCLIASASVD-----KSIKIWDVRNYRVPIAVLNGH--GYAVRKVKFSPHRRNLLASCSYDM-----TVCLWDFMVEDA  271 (317)
Q Consensus       204 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~  271 (317)
                      ...+++.|+.+     ..+..||..+.+  .......  ...-.+.... .+. +++.|+.++     ....+|..+.+.
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~-i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL-HNC-IYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTE-EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             eecceEecCcccccccceEEEeeccccc--cccccccccccccccccce-eee-EEEecCccccccccceeeeeecceee
Confidence            44566666543     346778876543  2222111  1111223332 233 566665442     456677665441


Q ss_pred             eeeeeeccc-cee-EeEEEEeccCCeEEEeecCC-----cEEEEecCCC
Q 021121          272 LVGRYDHHT-EFA-VGVDMSVLVEGLLASTGWDE-----LVYVWQQGMD  313 (317)
Q Consensus       272 ~~~~~~~~~-~~v-~~~~~~~~~~~~l~s~~~dg-----~i~~w~~~~~  313 (317)
                      .  ...... ... .+++. .+ +++++.||.++     .+.+||+..+
T Consensus       224 ~--~~~~~p~~r~~~~~~~-~~-~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         224 T--FVAPMKHRRSALGITV-HQ-GRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             E--ECCCCSSCCBSCEEEE-ET-TEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             e--cccCccCcccceEEEE-EC-CEEEEEecCCCCeecceEEEEECCCC
Confidence            1  111111 111 12222 23 67888877554     3678887653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.57  E-value=0.34  Score=37.21  Aligned_cols=188  Identities=11%  Similarity=0.117  Sum_probs=107.9

Q ss_pred             EEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEec----CC-CCeEEEEe-CC---CeEEEEeCCCC-Cceeeecc
Q 021121          121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP----RH-SDVFCSAS-GD---CTLRIWDVREM-GSTMIIPA  190 (317)
Q Consensus       121 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~-~~~l~~~~-~d---g~i~i~d~~~~-~~~~~~~~  190 (317)
                      +++....++-|.+||++ |+.+..+.  .+.++.+..-.    .+ ..-+++++ .+   ..|.+|.+... ..+..+..
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            77777777779999996 77777664  34555555432    11 22234444 22   35778877532 22222221


Q ss_pred             C-------ccceEEEEe--cCCCCc-EEEEEecCCcEEEEEccCCC------ccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          191 H-------EFEILACDW--NKYDDC-LIASASVDKSIKIWDVRNYR------VPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       191 ~-------~~~v~~i~~--~~~~~~-~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                      .       ...+..+++  ++.++. ++++...+|.+..|.+....      ..++.+. -...+-.|.+.+... .|+.
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~-~Lyi  196 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYG-SLYI  196 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTT-EEEE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCC-cEEE
Confidence            1       123555555  664554 45666778999888774322      1223333 345788999999888 4766


Q ss_pred             eecCCeEEEEeccccc----ceeeeee--cccceeEeEEEEec--cC-CeEEEeecCCcEEEEecCCC
Q 021121          255 CSYDMTVCLWDFMVED----ALVGRYD--HHTEFAVGVDMSVL--VE-GLLASTGWDELVYVWQQGMD  313 (317)
Q Consensus       255 ~~~d~~i~vwd~~~~~----~~~~~~~--~~~~~v~~~~~~~~--~~-~~l~s~~~dg~i~~w~~~~~  313 (317)
                      +-++..|..++.....    .++....  .....+.+|+.-..  +. .+|+|.-.+++..+|+....
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            7777666555543221    2222221  23456778876643  12 35556557899999998653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.30  E-value=0.42  Score=36.59  Aligned_cols=197  Identities=9%  Similarity=0.106  Sum_probs=110.7

Q ss_pred             eeEEEEecCCCCeEEEEEeccccc------ccCceEEEEecCCCCCcceeeeeecCC-----CCeeEEEe--cCCCCCeE
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGI------LGNGRVHVLDLSPAAPALTELVAFDTA-----DGVYDLAW--SESHDSLL   76 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~------~~~g~i~i~~~~~~~~~~~~~~~~~~~-----~~v~~~~~--~~~~~~~l   76 (317)
                      .-.+...|  ++.++.+++..+..      ...|.|.++|+++..+....+......     -....+..  .+++..+|
T Consensus        37 ~EDi~~~~--dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEECT--TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEECC--CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            34677778  67777776532211      125999999998776544444432211     12233333  34554456


Q ss_pred             EEEE---cCCeEEEEEeCCCCC-CCCceeec-cCCcceEEEEEecCCCCEEEEEc-----------------CCCEEEEE
Q 021121           77 IAAV---ADGSVKIYDTALPPT-ANPIRSLH-EHTREVHSADYNPTRRDSFITSS-----------------WDDTVKLW  134 (317)
Q Consensus        77 ~~~~---~dg~i~v~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iw  134 (317)
                      ++..   ...+|.+|++..... ...+..+. ......+.+.+..++. +++|-.                 ..+.+.-|
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            6553   356788998875421 11111222 1234578888888887 677631                 12344444


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec--cCccceEEEEecCCCCcEEEEEe
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP--AHEFEILACDWNKYDDCLIASAS  212 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~  212 (317)
                      |  .++. ......-...+.++++|++..++++-+..+.|+.|++..........  ......-.+.+.+.++.+.+++.
T Consensus       194 ~--~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         194 S--PNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             C--SSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             c--CCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            4  3333 22223345689999999955566677778899999987554332221  23344567777763555555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.59  Score=36.27  Aligned_cols=178  Identities=8%  Similarity=0.034  Sum_probs=95.9

Q ss_pred             ceeEEEEecCCCCeEEEEEecccccccCceEEEEecCC---------CCCcceeeeeecCCCCeeEEEecCCCCCeEEEE
Q 021121            9 NGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSP---------AAPALTELVAFDTADGVYDLAWSESHDSLLIAA   79 (317)
Q Consensus         9 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~   79 (317)
                      ...-++.++. .+.+++++.       + .+.|..++.         ....+....   .-..|..++|+-+   .|++.
T Consensus        38 ~~~LLAVsn~-~GLl~aa~~-------~-~l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d---~l~v~  102 (381)
T d1xipa_          38 SLQNLDISNS-KSLFVAASG-------S-KAVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGD---QVLVS  102 (381)
T ss_dssp             CCBCEEEETT-TTEEEEEET-------T-EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETT---EEEEE
T ss_pred             ccceEEEeCC-CCEEEEECC-------C-EEEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCC---EEEEE
Confidence            4456777774 455555544       3 566776421         111222222   1236899999843   45544


Q ss_pred             EcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEEEcCCCceeEEee-----ccccceEE
Q 021121           80 VADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK-----EHAYCVYN  154 (317)
Q Consensus        80 ~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~  154 (317)
                       .++.+..++...-   ........-..++..+.++|.   .++....+|.+.++++..++......     .-.+.+.+
T Consensus       103 -~~~~l~~~~~~~l---~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  175 (381)
T d1xipa_         103 -TRNALYSLDLEEL---SEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLA  175 (381)
T ss_dssp             -ESSEEEEEESSST---TCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred             -eCCCEEEEEeecc---ccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceE
Confidence             4566888887643   222333334567888888875   56666778999999998876433221     12345677


Q ss_pred             EEEecCCCCeEEEEeCCCeEEEE-eCCCCCceeeeccCccceEEEEecCCCCcEEEEE
Q 021121          155 ATWNPRHSDVFCSASGDCTLRIW-DVREMGSTMIIPAHEFEILACDWNKYDDCLIASA  211 (317)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  211 (317)
                      +.|++. +..++++..++ ..+- ++.....+.........+.+|.|-. +..++++-
T Consensus       176 v~ws~k-gkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~-~~~F~vvy  230 (381)
T d1xipa_         176 VLLKDR-SFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF  230 (381)
T ss_dssp             EEETTS-CEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred             EEEeCC-cEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEec-CceEEEEE
Confidence            777765 55555553221 1111 1111111111112344678899986 55555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.92  E-value=0.6  Score=36.25  Aligned_cols=179  Identities=13%  Similarity=0.085  Sum_probs=102.4

Q ss_pred             CeeEEEecCCCCCeEEEEEcCCeEEEEEeCCC-------CCCCCceeeccCCcceEEEEEecCCCCEEEEEcCCCEEEEE
Q 021121           62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALP-------PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW  134 (317)
Q Consensus        62 ~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  134 (317)
                      ...-++.++.. .++++|+.++ +.|..++.-       ...... ..+..-..|..++|+.+   .++.. .++.+..+
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~-~~~~~ip~v~~vafs~d---~l~v~-~~~~l~~~  110 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPDVIFVCFHGD---QVLVS-TRNALYSL  110 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTTEEEEEEETT---EEEEE-ESSEEEEE
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCcc-eeccCCCCeEEEEeeCC---EEEEE-eCCCEEEE
Confidence            46678888765 4888888775 677764311       001111 11112236888999744   44444 45678888


Q ss_pred             EcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec-----cCccceEEEEecCCCCcEEE
Q 021121          135 TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-----AHEFEILACDWNKYDDCLIA  209 (317)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~l~  209 (317)
                      +...-...........++..+.++|.   .++....+|.+.++++..++......     .-...+.+++|++ .+..++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v  186 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSF  186 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEE
T ss_pred             EeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEE
Confidence            88776555555555667888888764   56677889999999998875433221     1234577788887 777777


Q ss_pred             EEecCCcEEEE-EccCCCccEEEEecCCCceeEEEecCCCCeeEEe
Q 021121          210 SASVDKSIKIW-DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS  254 (317)
Q Consensus       210 ~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  254 (317)
                      ++..++ ..+- ++..... +.........|.+|.|-.+.. ++++
T Consensus       187 ~~~g~~-~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~~-F~vv  229 (381)
T d1xipa_         187 AWRNGE-MEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQD-FLAV  229 (381)
T ss_dssp             EEETTE-EEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred             EeCCCc-eeeccCCCCccc-cCCCcCCCcceeEEEEecCce-EEEE
Confidence            764322 2211 1111110 000011234677888876654 4443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.65  Score=34.08  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=48.4

Q ss_pred             CCeEEEEeCC-----CeEEEEeCCCCCceeeec-cCccceEEEEecCCCCcEEEEEecCC-----cEEEEEccCCCccEE
Q 021121          162 SDVFCSASGD-----CTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDK-----SIKIWDVRNYRVPIA  230 (317)
Q Consensus       162 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~  230 (317)
                      ..+++.|+.+     ..+..||..+.+-...-. .......+....  .+.+++.|+.++     ....+|..+.+  ..
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~--~~  224 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET--WT  224 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EE
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeeccee--ee
Confidence            4455555543     346778876543221111 011111222222  456666665443     46677766543  22


Q ss_pred             EEecC--CCceeEEEecCCCCeeEEeeecCC-----eEEEEeccccc
Q 021121          231 VLNGH--GYAVRKVKFSPHRRNLLASCSYDM-----TVCLWDFMVED  270 (317)
Q Consensus       231 ~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~-----~i~vwd~~~~~  270 (317)
                      .+...  ...-.+++.. +++ +++.|+.++     .+.+||+.+..
T Consensus       225 ~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         225 FVAPMKHRRSALGITVH-QGR-IYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             ECCCCSSCCBSCEEEEE-TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cccCccCcccceEEEEE-CCE-EEEEecCCCCeecceEEEEECCCCE
Confidence            22111  1111123332 455 677776544     37788887754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.80  E-value=1.2  Score=35.18  Aligned_cols=249  Identities=10%  Similarity=0.043  Sum_probs=122.3

Q ss_pred             eeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEc--------
Q 021121           10 GYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVA--------   81 (317)
Q Consensus        10 v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------   81 (317)
                      +...++||+ ..+++.+.+..  ......|+++|+.++......+.    ......++|.+++..++.+.-.        
T Consensus       127 ~~~~~~Spd-~~~la~s~d~~--G~e~~~l~v~Dl~tg~~~~~~i~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         127 LRGYAFSED-GEYFAYGLSAS--GSDWVTIKFMKVDGAKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             EEEEEECTT-SSEEEEEEEET--TCSCEEEEEEETTTTEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             ecceEecCC-CCEEEEEeccc--cCchheeEEeccCcceecccccc----cccccceEEcCCCCEEEEEEeccccCcccc
Confidence            445678884 34444454430  01124799999998752111111    1122568899998644444321        


Q ss_pred             -------CCeEEEEEeCCCCCCCCceeeccC--CcceEEEEEecCCCCEEEEEc--CCCE--EEEEEcCCCce-------
Q 021121           82 -------DGSVKIYDTALPPTANPIRSLHEH--TREVHSADYNPTRRDSFITSS--WDDT--VKLWTVDRPTS-------  141 (317)
Q Consensus        82 -------dg~i~v~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~--~dg~--v~iwd~~~~~~-------  141 (317)
                             ...|..+.+.+. .......+...  ...+..+..+++++.+++...  .++.  +.+.|+.....       
T Consensus       200 ~~~~~~~~~~v~~h~lgt~-~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  278 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTD-QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSC-GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             cccccCCcceEEEEECCCC-ccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence                   124666766554 12222333332  234666778888883333332  2333  44455543211       


Q ss_pred             -eEEeeccccceEEEEEecCCCCeEEEEe---CCCeEEEEeCCCCCce--e-eeccCccceEEEEecCCCCcEEE-EEec
Q 021121          142 -VRTFKEHAYCVYNATWNPRHSDVFCSAS---GDCTLRIWDVREMGST--M-IIPAHEFEILACDWNKYDDCLIA-SASV  213 (317)
Q Consensus       142 -~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~-~~~~~~~~v~~i~~~~~~~~~l~-~~~~  213 (317)
                       ............-+.. .. ..+++...   .++.|...++......  . .+..+...+..-.+.. .+.+|+ .-..
T Consensus       279 ~~~~~~~~~~~~~~~~~-~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~-~~~~lvl~~~~  355 (430)
T d1qfma1         279 WVKLIDNFEGEYDYVTN-EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLH  355 (430)
T ss_dssp             CEEEECSSSSCEEEEEE-ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEE
T ss_pred             eeEeecccccceEEEec-CC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEE-ECCEEEEEEEc
Confidence             1122222222222222 21 33333332   3467777777654321  2 2333444343333332 334444 4445


Q ss_pred             CC--cEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeec---CCeEEEEeccccc
Q 021121          214 DK--SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY---DMTVCLWDFMVED  270 (317)
Q Consensus       214 d~--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~vwd~~~~~  270 (317)
                      ++  .|++++...+.. ........+.+..+...++...+.++.+.   =.++.-+|+.+++
T Consensus       356 ~~~~~l~v~~~~~~~~-~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         356 DVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEeEEEEEECCCCcE-EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54  588899887653 33333344566666666666544444331   2568888888775

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=93.22  E-value=1.5  Score=34.46  Aligned_cols=149  Identities=7%  Similarity=0.001  Sum_probs=82.3

Q ss_pred             cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee-------ccCccceEEEEecCCCCcEEEEEecC----Cc
Q 021121          148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII-------PAHEFEILACDWNKYDDCLIASASVD----KS  216 (317)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~d----~~  216 (317)
                      ..+.+.+|+++|.+++++++++..|-|..-+ ..++.-..+       ......+.+|+++|.+.+.+..+..+    ..
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~   88 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   88 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence            4567999999999899998888877654332 223322211       11233578999999766777665432    12


Q ss_pred             EEEEEccCCCccEEEEec---------CCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeee------eecccc
Q 021121          217 IKIWDVRNYRVPIAVLNG---------HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR------YDHHTE  281 (317)
Q Consensus       217 i~v~d~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~------~~~~~~  281 (317)
                      ..+|-...+...-..+..         .......+.++|.....+..++.++.|  |....+......      ......
T Consensus        89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G~tW~~~~~~~~~~~~~~  166 (427)
T d2ebsa1          89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI  166 (427)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTTSSCEECTTSSCCCCSSS
T ss_pred             ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCCceeeecccCcccccCCc
Confidence            345544433322222211         112356789999876667666655544  332222211111      111223


Q ss_pred             eeEeEEEEeccCCeEEEe
Q 021121          282 FAVGVDMSVLVEGLLAST  299 (317)
Q Consensus       282 ~v~~~~~~~~~~~~l~s~  299 (317)
                      .+..+.++|.....|+.+
T Consensus       167 ~~~~i~~~p~~~~~~y~~  184 (427)
T d2ebsa1         167 GYTSVIFDPERNGTIYAS  184 (427)
T ss_dssp             CEEEEEECTTSTTCEEEE
T ss_pred             cceEEEecccccceeeee
Confidence            477888988755555443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=92.39  E-value=1.9  Score=33.73  Aligned_cols=151  Identities=11%  Similarity=0.072  Sum_probs=84.3

Q ss_pred             cCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCC-CCCCCCcee----eccCCcceEEEEEecCCCCEEEEEcCC----
Q 021121           58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTAL-PPTANPIRS----LHEHTREVHSADYNPTRRDSFITSSWD----  128 (317)
Q Consensus        58 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d----  128 (317)
                      +..+.|.+|+++|..+.++.++...|-|  |.-.. ++..+++..    .......+.+|+++|..++.+..+..+    
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv--~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~   86 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD   86 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCE--EEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCE--EEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCC
Confidence            3456799999999988889888876654  43322 222222211    112344688999999876566655422    


Q ss_pred             CEEEEEE-cCCCceeEEeec---------cccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeec------cCc
Q 021121          129 DTVKLWT-VDRPTSVRTFKE---------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP------AHE  192 (317)
Q Consensus       129 g~v~iwd-~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~  192 (317)
                      ....+|- .+.++.-..+..         .......+.++|.+.+.+.+++.++.|.. ....++.-..+.      ...
T Consensus        87 ~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~~~~~~  165 (427)
T d2ebsa1          87 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG  165 (427)
T ss_dssp             SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSCCCCSS
T ss_pred             cCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcccccCC
Confidence            1123443 333433333221         11235678899987888888876665532 233333222221      122


Q ss_pred             cceEEEEecCCCCcEEEEE
Q 021121          193 FEILACDWNKYDDCLIASA  211 (317)
Q Consensus       193 ~~v~~i~~~~~~~~~l~~~  211 (317)
                      ..+..+.++|.+...+..+
T Consensus       166 ~~~~~i~~~p~~~~~~y~~  184 (427)
T d2ebsa1         166 IGYTSVIFDPERNGTIYAS  184 (427)
T ss_dssp             SCEEEEEECTTSTTCEEEE
T ss_pred             ccceEEEecccccceeeee
Confidence            3477889988655555443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.33  E-value=1.6  Score=30.59  Aligned_cols=148  Identities=13%  Similarity=0.142  Sum_probs=81.3

Q ss_pred             CCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeecc-------CCcceEEEEEecCCCCEEEEEcC-CCEE
Q 021121           60 ADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE-------HTREVHSADYNPTRRDSFITSSW-DDTV  131 (317)
Q Consensus        60 ~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~-dg~v  131 (317)
                      ..+++-+...-++++..++|+......+|-++.++ ...+..+..       ...-|..+.+-..++.-++++.. .|.+
T Consensus       101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGk-lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeecCceEEEecccCCceEEEEEeCCc-eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            33344444444566799999999899999988762 222222221       12334444443333323444444 6666


Q ss_pred             EEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeC---CCeEEEEeCCCCCceee-ecc------CccceEEEEec
Q 021121          132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVREMGSTMI-IPA------HEFEILACDWN  201 (317)
Q Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~-~~~------~~~~v~~i~~~  201 (317)
                      ++++...+           .++.....+. .+. +++.+   .....-+|+++++.... ++.      ....|.-+-+.
T Consensus       180 ri~tpkeG-----------S~~~ay~~~g-nKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~  246 (313)
T d2hu7a1         180 RVFDSGEG-----------SFSSASISPG-MKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYL  246 (313)
T ss_dssp             EEECCSSE-----------EEEEEEECTT-SCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEEC
T ss_pred             EEecCCCC-----------cccceeEccC-cee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeC
Confidence            66665544           3444444443 232 33221   11222457776643321 111      12235556689


Q ss_pred             CCCCcEEEEEecCCcEEEEEc
Q 021121          202 KYDDCLIASASVDKSIKIWDV  222 (317)
Q Consensus       202 ~~~~~~l~~~~~d~~i~v~d~  222 (317)
                      | ++++++.+-.||.-++|.-
T Consensus       247 P-dd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         247 P-DGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             T-TSCEEEEEEETTEEEEEET
T ss_pred             C-CCcEEEEEecCCchheeec
Confidence            9 8999899999999999973

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.55  E-value=1.9  Score=30.17  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             CCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEecCCCCEEEE------EcCCCEEEEEEcCCCceeEEe
Q 021121           72 HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFIT------SSWDDTVKLWTVDRPTSVRTF  145 (317)
Q Consensus        72 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~------~~~dg~v~iwd~~~~~~~~~~  145 (317)
                      ++++++++...|.+.++-+..+   +.+. +  .+.+|....--..+-..+.-      |-.-..|.+-++...-....+
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~---~~vk-L--tkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i   98 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGG---ETVK-L--NREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL   98 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSS---SCEE-C--CSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC
T ss_pred             CCcEEEEEeccceEEEEEEeCC---EEEE-E--ecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe
Confidence            4468999989999999998865   2222 1  12333322211111111111      111223444444432223333


Q ss_pred             eccc-cceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCce
Q 021121          146 KEHA-YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST  185 (317)
Q Consensus       146 ~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (317)
                      .... -+|.+++..  +.+...+|+......+|-++.++..
T Consensus        99 ~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklr  137 (313)
T d2hu7a1          99 EAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLR  137 (313)
T ss_dssp             TTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             cCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCcee
Confidence            3332 456666654  5788889988888889988877543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.10  E-value=3.6  Score=32.58  Aligned_cols=53  Identities=8%  Similarity=0.171  Sum_probs=37.5

Q ss_pred             ccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeee--c------cCccceEEEEecC
Q 021121          149 AYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII--P------AHEFEILACDWNK  202 (317)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~------~~~~~v~~i~~~~  202 (317)
                      -...++|+|.|+ ++++++--..|.|++++..+++.....  .      .-+.....|+++|
T Consensus        26 L~~P~~la~~pd-g~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          26 LNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             CSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCCceEEEEeCC-CeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            346789999999 788876655799999988776443211  1      1234578899998

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.69  E-value=3.2  Score=30.12  Aligned_cols=244  Identities=15%  Similarity=0.027  Sum_probs=117.4

Q ss_pred             ceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEec
Q 021121           37 GRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNP  116 (317)
Q Consensus        37 g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  116 (317)
                      ..|+.|--+........  ..+....|..++--.   ...++-. ||.|..|-.....+   +-.-......+..+..- 
T Consensus         4 ~sv~~WG~~~~~~~~~~--~~~~~~~i~~va~G~---~h~~al~-dG~v~~wG~N~~GQ---lG~~~~~~~~v~~v~~G-   73 (273)
T d1jtdb_           4 TSVVAWGGNNDWGEATV--PAEAQSGVDAIAGGY---FHGLALK-GGKVLGWGANLNGQ---LTMPAATQSGVDAIAAG-   73 (273)
T ss_dssp             SEEEEESSCCSSSTTCC--CGGGSSSEEEEEECS---SEEEEEE-TTEEEEEECCTTST---TSCCGGGGSCCCEEEEC-
T ss_pred             CEEEEECCCCCCCceec--cccCCCCcEEEEccC---CEEEEEE-CCEEEEEeCCCCCc---eeeeecccccceEEecC-
Confidence            36888865433221111  113345677777643   2333334 89999998654422   11111223345555432 


Q ss_pred             CCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccceE
Q 021121          117 TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEIL  196 (317)
Q Consensus       117 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~  196 (317)
                       .. ..+.- .||.+..|.....-...........+..++....   ..+ .-.|+.+..|.-...............+.
T Consensus        74 -~~-~~~al-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~---~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~  146 (273)
T d1jtdb_          74 -NY-HSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW---ASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVT  146 (273)
T ss_dssp             -SS-EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT---EEE-EEETTEEEEEECCTTSTTSCCGGGGSSEE
T ss_pred             -CC-ceeee-eeeeeeccCCCcceeeccccccccceeEEeeecc---ccc-ccccccceecccCCCCceeeeccCCceEE
Confidence             22 22222 4899999976443222111112233445554432   222 23588999997544332222222233454


Q ss_pred             EEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecccccceeeee
Q 021121          197 ACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY  276 (317)
Q Consensus       197 ~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  276 (317)
                      .++-..   ..++ ...++.++.|-.....+ ..........|..|+....  +.++ - .||.|..|=......+- ..
T Consensus       147 ~~~~~~---~~~~-~~~~g~~~~~G~~~~g~-~~~~~~~~~~v~~Is~G~~--h~~~-l-~dG~v~~WG~n~~Gql~-~~  216 (273)
T d1jtdb_         147 ALDGGV---YTAL-AVKNGGVIAWGDNYFGQ-TTVPAEAQSGVDDVAGGIF--HSLA-L-KDGKVIAWGDNRYKQTT-VP  216 (273)
T ss_dssp             EEEECS---SEEE-EEETTEEEEEECCTTST-TSCCGGGSSSEEEEEECSS--EEEE-E-ETTEEEEEECCTTSTTC-CC
T ss_pred             EEeccc---eeee-eecccceeEeecccCCc-ccccccccCCccceeccce--eeEE-E-ecCcEEEcCCCCCCccC-CC
Confidence            444322   2222 33478888887654332 1122223446777765432  2233 2 38999999644332221 11


Q ss_pred             ecccceeEeEEEEeccCCeEEEeecCCcEEEEecC
Q 021121          277 DHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG  311 (317)
Q Consensus       277 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~~w~~~  311 (317)
                      ......|..|+-..  ...++.  .||.|..|--.
T Consensus       217 ~~~~~~v~~I~~G~--~~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         217 TEALSGVSAIASGE--WYSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             GGGGSSCCEEEECS--SCEEEE--ETTEEEEESTT
T ss_pred             ccCCCCcEEEEeCc--ceEEEE--ECCEEEEECCC
Confidence            11223466665432  233333  38999999543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.90  E-value=6  Score=31.23  Aligned_cols=54  Identities=9%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             cceeEEEEecCCCCeEEEEEecccccccCceEEEEecCCCCCcceeeeee-------cCCCCeeEEEecCC
Q 021121            8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAF-------DTADGVYDLAWSES   71 (317)
Q Consensus         8 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~g~i~i~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~   71 (317)
                      ...++|+|.|  +++++++...      +|+|++++.....  ...+...       ........|+|+|+
T Consensus        27 ~~P~~la~~p--dg~llVter~------~G~i~~v~~~~g~--~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGP--DNQIWLTERA------TGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECT--TSCEEEEETT------TCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeC--CCeEEEEEec------CCEEEEEECCCCc--EeecccCCccccccCCCCceeeEEeCCC
Confidence            5678999999  6888887743      6899998866554  2222221       23457889999985

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=80.89  E-value=7.9  Score=27.88  Aligned_cols=205  Identities=16%  Similarity=0.071  Sum_probs=101.2

Q ss_pred             CceEEEEecCCCCCcceeeeeecCCCCeeEEEecCCCCCeEEEEEcCCeEEEEEeCCCCCCCCceeeccCCcceEEEEEe
Q 021121           36 NGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN  115 (317)
Q Consensus        36 ~g~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~  115 (317)
                      ||.|..|-.+.....-...   .....|..++--..  ..++  -.||.+..|......+...   .......+..++..
T Consensus        43 dG~v~~wG~N~~GQlG~~~---~~~~~v~~v~~G~~--~~~a--l~dg~v~~wG~~~~gq~~~---~~~~~~~~~~i~~~  112 (273)
T d1jtdb_          43 GGKVLGWGANLNGQLTMPA---ATQSGVDAIAAGNY--HSLA--LKDGEVIAWGGNEDGQTTV---PAEARSGVDAIAAG  112 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCG---GGGSCCCEEEECSS--EEEE--EETTEEEEEECCTTSTTCC---CGGGGSSCCEEEEE
T ss_pred             CCEEEEEeCCCCCceeeee---cccccceEEecCCC--ceee--eeeeeeeccCCCcceeecc---ccccccceeEEeee
Confidence            8899999877654211111   12234555543221  2233  2489999998653311111   11112334444443


Q ss_pred             cCCCCEEEEEcCCCEEEEEEcCCCceeEEeeccccceEEEEEecCCCCeEEEEeCCCeEEEEeCCCCCceeeeccCccce
Q 021121          116 PTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI  195 (317)
Q Consensus       116 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  195 (317)
                      ..   ..+.. .|+.+..|.-...............|..++-.   ...+ ....++.++.|-................|
T Consensus       113 ~~---~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~~-~~~~~g~~~~~G~~~~g~~~~~~~~~~~v  184 (273)
T d1jtdb_         113 AW---ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTA-LAVKNGGVIAWGDNYFGQTTVPAEAQSGV  184 (273)
T ss_dssp             TT---EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEE-EEEETTEEEEEECCTTSTTSCCGGGSSSE
T ss_pred             cc---ccccc-ccccceecccCCCCceeeeccCCceEEEEecc---ceee-eeecccceeEeecccCCcccccccccCCc
Confidence            22   22322 48899999754432222222223345554432   2223 34457889999765544333322344567


Q ss_pred             EEEEecCCCCcEEEEEecCCcEEEEEccCCCccEEEEecCCCceeEEEecCCCCeeEEeeecCCeEEEEecc
Q 021121          196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM  267 (317)
Q Consensus       196 ~~i~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~vwd~~  267 (317)
                      ..|+...  ...++.  .||.|+.|=.....+.- ........|..|+-....  .++.  .||.|..|-..
T Consensus       185 ~~Is~G~--~h~~~l--~dG~v~~WG~n~~Gql~-~~~~~~~~v~~I~~G~~~--~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         185 DDVAGGI--FHSLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWY--SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             EEEEECS--SEEEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSC--EEEE--ETTEEEEESTT
T ss_pred             cceeccc--eeeEEE--ecCcEEEcCCCCCCccC-CCccCCCCcEEEEeCcce--EEEE--ECCEEEEECCC
Confidence            7777543  223332  37999999654432211 111122356677654332  2332  48999999643