Citrus Sinensis ID: 021141


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
cccccccccccccccccccccccccccEEcccccccccccccccEEccccccccccccccccccccEEccccccEEEEccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccEEEEEEEccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHcccHHHHHHHcccccccHHHHHcEEEEEEEEcccccccccccHHHHcccccccccccccccEEccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccEEEEEEEccccccccccccc
cccccccccccccccccccccEEEEEEEEccccccccccccHHHHEccccccccccccccccccccccccccccEEEEccccccccccccccccccHcHEEEEEEcccccHHHHHcccccccccccccccEEEEEEEEccccccHHcccccccccEEEEEEEEccccHHccccccccHHHHHHHcccHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccEEEcccccEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHEEEHHEHEEcccHHHccHHEEEEEEEEccEccccccccc
mssddkarvssprapgakrKLLSRLSFKfkeghnnqnsfppkvllqrpkagsslsfcplekkmsnswspiepstfrvrgqnylrdkkkdfapnfaaycpfaadVFLSQRKIDHiarfvdlpvidsseelpsILVVnlqiplypaaifqgendgegMNLVLYFKLSesyskdlpvHFQEHVNRIINDevervkgfpldtiNSFRERLKILSRLvngedlhlSTTEKKILNtynekpvlsrpqhefylgenyfeidldvhrfsylsrkTFAAFQDRFKLCkldfgltiqenktenlpenmlccirlneidysnyrqlgv
mssddkarvssprapgakrkLLSRLSFKFkeghnnqnsfppkvllqrpKAGSSLSFCPLEKkmsnswspiepstfRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIindevervkgfpldtiNSFRERLKILsrlvngedlhlsttekkilntynekpvlsrPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIqenktenlpeNMLCCIRlneidysnyrqlgv
MSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
**************************************************************************FRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNY*****
*********************************************QRPKAGSSLS**********SWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVD*******EELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
*****************KRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
*******************KLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNY*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
225452618 532 PREDICTED: uncharacterized protein LOC10 1.0 0.595 0.722 1e-130
296087747 479 unnamed protein product [Vitis vinifera] 1.0 0.661 0.722 1e-130
255552782 483 conserved hypothetical protein [Ricinus 0.993 0.652 0.696 1e-129
224140901 478 predicted protein [Populus trichocarpa] 1.0 0.663 0.685 1e-126
356497824 512 PREDICTED: uncharacterized protein LOC10 1.0 0.619 0.671 1e-126
255558294 512 conserved hypothetical protein [Ricinus 0.949 0.587 0.707 1e-125
356501948 513 PREDICTED: uncharacterized protein LOC10 0.949 0.586 0.691 1e-124
449461897 439 PREDICTED: uncharacterized protein LOC10 0.955 0.690 0.689 1e-124
356550490 512 PREDICTED: uncharacterized protein LOC10 0.984 0.609 0.669 1e-122
224110962 551 predicted protein [Populus trichocarpa] 0.949 0.546 0.681 1e-122
>gi|225452618|ref|XP_002276119.1| PREDICTED: uncharacterized protein LOC100266380 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/317 (72%), Positives = 264/317 (83%)

Query: 1   MSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLE 60
           +SS DK R  SP  P A+RK   +LSFK +EGH     F PK LLQRP AGS + FCP  
Sbjct: 216 VSSVDKRRSLSPSHPIARRKPSLKLSFKRREGHATPPLFSPKALLQRPLAGSQIPFCPPG 275

Query: 61  KKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDL 120
           KKMS+SWS +EPSTF+VRG NYLRDKKKDFAPN+AA+ PF  DVFLS RKI+HIARFV+L
Sbjct: 276 KKMSDSWSTLEPSTFKVRGPNYLRDKKKDFAPNYAAFYPFGFDVFLSPRKINHIARFVEL 335

Query: 121 PVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHV 180
           P ++SS  LP ILVVNLQIPLYPA+IFQ ENDGEGM+ VLYFKLSES+SK+LP+HFQE++
Sbjct: 336 PAVNSSGILPPILVVNLQIPLYPASIFQSENDGEGMSFVLYFKLSESFSKELPLHFQENI 395

Query: 181 NRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRP 240
            R+I+DEVERV+GF +DTI  FRERLKIL RLVN EDLHLS  E+K++N YNEKPVLSRP
Sbjct: 396 RRLIDDEVERVRGFAVDTIAPFRERLKILGRLVNMEDLHLSAAERKLMNAYNEKPVLSRP 455

Query: 241 QHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLC 300
           QHEFYLGENYFEIDLD+HRFSY+SRK F AFQDR K C LDFGLTIQ NK E+LPEN+LC
Sbjct: 456 QHEFYLGENYFEIDLDMHRFSYISRKGFEAFQDRLKHCILDFGLTIQGNKAEDLPENILC 515

Query: 301 CIRLNEIDYSNYRQLGV 317
           C+RLNEIDY+N+ QLG 
Sbjct: 516 CMRLNEIDYANHNQLGC 532




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087747|emb|CBI35003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552782|ref|XP_002517434.1| conserved hypothetical protein [Ricinus communis] gi|223543445|gb|EEF44976.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224140901|ref|XP_002323816.1| predicted protein [Populus trichocarpa] gi|118482376|gb|ABK93111.1| unknown [Populus trichocarpa] gi|222866818|gb|EEF03949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497824|ref|XP_003517757.1| PREDICTED: uncharacterized protein LOC100787325 [Glycine max] Back     alignment and taxonomy information
>gi|255558294|ref|XP_002520174.1| conserved hypothetical protein [Ricinus communis] gi|223540666|gb|EEF42229.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356501948|ref|XP_003519785.1| PREDICTED: uncharacterized protein LOC100819425 [Glycine max] Back     alignment and taxonomy information
>gi|449461897|ref|XP_004148678.1| PREDICTED: uncharacterized protein LOC101209394 [Cucumis sativus] gi|449519689|ref|XP_004166867.1| PREDICTED: uncharacterized protein LOC101231709 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550490|ref|XP_003543620.1| PREDICTED: uncharacterized protein LOC100797844 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224110962|ref|XP_002315697.1| predicted protein [Populus trichocarpa] gi|222864737|gb|EEF01868.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
TAIR|locus:2012848485 AT1G10410 [Arabidopsis thalian 0.987 0.645 0.642 1e-109
TAIR|locus:2202877492 CW14 "AT1G59650" [Arabidopsis 0.993 0.640 0.636 3.5e-107
TAIR|locus:2093868513 AT3G29180 "AT3G29180" [Arabido 0.981 0.606 0.528 4.9e-85
TAIR|locus:2175648511 AT5G39430 "AT5G39430" [Arabido 0.987 0.612 0.493 3.3e-79
TAIR|locus:2014819504 AT1G13970 "AT1G13970" [Arabido 0.854 0.537 0.519 8.1e-76
TAIR|locus:2102465733 AT3G54800 [Arabidopsis thalian 0.255 0.110 0.310 2.1e-05
TAIR|locus:2198866313 AT1G06050 "AT1G06050" [Arabido 0.299 0.303 0.271 0.00032
TAIR|locus:2179255269 AT5G25020 "AT5G25020" [Arabido 0.268 0.315 0.293 0.00056
TAIR|locus:2057547737 AT2G28320 [Arabidopsis thalian 0.233 0.100 0.324 0.00068
TAIR|locus:2012848 AT1G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 201/313 (64%), Positives = 250/313 (79%)

Query:     3 SDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKK 62
             S DK R  S   P +++K   RLS+K++EGH +   F  K+ L+RP AGS + FCP++KK
Sbjct:   168 SIDKRRSLSSSPPSSRKKSSLRLSYKWREGHASGALFLSKMQLKRPIAGSQVPFCPIDKK 227

Query:    63 MSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPV 122
             M + WS I+P++FRVRG+ YLR+KKK+FAP+ AAY PF  DVFLS+ KI H+A++V LPV
Sbjct:   228 MLDCWSTIDPNSFRVRGKTYLREKKKEFAPSHAAYNPFGVDVFLSEHKIHHVAQYVKLPV 287

Query:   123 IDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNR 182
               +S +LPSILVVN+QIPLYP AIFQGE+DGEGMN+VLYFKLS++YSK+LP+HFQE + R
Sbjct:   288 TTTSTKLPSILVVNVQIPLYPTAIFQGESDGEGMNIVLYFKLSDNYSKELPLHFQESIRR 347

Query:   183 IINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQH 242
             +I+DEVE+VKGFPLDT   FRERLKIL R+ N +DLHLS  EKK++  YNEKPVLSRPQH
Sbjct:   348 LIDDEVEKVKGFPLDTTAPFRERLKILGRVANVDDLHLSGPEKKLMQAYNEKPVLSRPQH 407

Query:   243 EFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI 302
             EFYLG+NYFEID+D+HRF Y+SRK F  F DR K+C LD GLTIQ NK E LPE +LCC+
Sbjct:   408 EFYLGDNYFEIDIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPEELPEQILCCV 467

Query:   303 RLNEIDYSNYRQL 315
             RLN ID+ NY QL
Sbjct:   468 RLNGIDFMNYHQL 480




GO:0005634 "nucleus" evidence=ISM
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2202877 CW14 "AT1G59650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093868 AT3G29180 "AT3G29180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175648 AT5G39430 "AT5G39430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014819 AT1G13970 "AT1G13970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198866 AT1G06050 "AT1G06050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179255 AT5G25020 "AT5G25020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057547 AT2G28320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00020834001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (370 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
pfam07059215 pfam07059, DUF1336, Protein of unknown function (D 5e-76
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) Back     alignment and domain information
 Score =  231 bits (592), Expect = 5e-76
 Identities = 98/246 (39%), Positives = 128/246 (52%), Gaps = 35/246 (14%)

Query: 67  WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVID-S 125
           WS  +PSTF+VRG+ YL+DKKK  A N   Y     D F S +KIDHIA   DL V   +
Sbjct: 1   WSEPDPSTFKVRGKTYLKDKKKIPAGNPL-YTLIGVDWFKSDKKIDHIANHPDLRVQKAA 59

Query: 126 SEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIIN 185
            + LP +L+VN+Q+P            GEG +LVLYF L E   K+L   F   + R ++
Sbjct: 60  KKGLPFVLIVNIQVP-----------GGEGYSLVLYFALEEPVEKELSPAFGSLLRRFVD 108

Query: 186 -DEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVL--SRPQH 242
            DE      F         ERLKI+ R+V G     S   ++++  YNEKP L    PQ 
Sbjct: 109 GDE----DAFR-------NERLKIIPRIVKG-----SWIVRQLV--YNEKPCLVGKAPQC 150

Query: 243 EFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI 302
            +Y G NY EID+D+   S ++RK    F        LD   TIQ    E LPE +L  +
Sbjct: 151 NYYRGPNYLEIDVDIGS-SSIARKGLELFLGYLTNLVLDLAFTIQGQTEEELPERLLGAV 209

Query: 303 RLNEID 308
           RLN+ID
Sbjct: 210 RLNKID 215


This family represents the C-terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function. Length = 215

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
PF07059227 DUF1336: Protein of unknown function (DUF1336); In 100.0
PLN00188719 enhanced disease resistance protein (EDR2); Provis 100.0
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=4.1e-79  Score=562.57  Aligned_cols=222  Identities=43%  Similarity=0.747  Sum_probs=209.8

Q ss_pred             cccCCCCCeEEcCCCccCCCccccCCCCCccceeeeeEeeeCcccccccccCCCccccCCC-CCCcEEEEEEEcCCCccc
Q 021141           67 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSE-ELPSILVVNLQIPLYPAA  145 (317)
Q Consensus        67 Ws~~~~~~F~VRG~~Yl~dkkK~pa~~~~l~~lvgvDlf~s~~ki~hIa~~~~lp~~~~~~-~~P~~fIVNlqvP~~p~~  145 (317)
                      ||+|++++|+|||+||++||||+||+++ +|+++|||||+|++|++|||+|++++.+.... +.||+||||+|||+||++
T Consensus         1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~   79 (227)
T PF07059_consen    1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS   79 (227)
T ss_pred             CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence            9999999999999999999999999995 99999999999999999999999999887654 589999999999999999


Q ss_pred             ccCCCCCCCceEEEEEEeeCccccCCCCcchHhHhhhhhhhhhhhhcCCCCCChhhhh-hhcceeeeeeCCCcccchhhH
Q 021141          146 IFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFR-ERLKILSRLVNGEDLHLSTTE  224 (317)
Q Consensus       146 ~f~~~~dg~g~slV~Yf~~~~~~~~~l~~~f~~~~~rf~~~eve~vkgf~~d~~d~fR-~RfKlIp~Vvng~~i~l~~~~  224 (317)
                      +| ++.||+|||+|+||++++++.++.++++.++++||++++         +.+|+|| +||||||+|+||+|+      
T Consensus        80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------  143 (227)
T PF07059_consen   80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------  143 (227)
T ss_pred             cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence            99 999999999999999999998888888999999999843         1228999 999999999999998      


Q ss_pred             HHHHhhc-CCeeeeecC--ceeeecCCCeEEEEEeecCchHHHHHHHHHhhhccceeEEeeeEeeecCCCCCCccceece
Q 021141          225 KKILNTY-NEKPVLSRP--QHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCC  301 (317)
Q Consensus       225 ~~l~~av-n~KPvLi~~--~~~y~~G~nYlEiDvDI~sfS~vAr~~l~~~~~~~k~lvvD~gf~IEg~~~eELPE~lLG~  301 (317)
                        +++++ |+||||+|+  +|+||+|+||||||||||+ |+|||+++++|++|+|+|+|||||+|||+++||||||||||
T Consensus       144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~  220 (227)
T PF07059_consen  144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC  220 (227)
T ss_pred             --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence              67777 999999985  9999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecccc
Q 021141          302 IRLNEID  308 (317)
Q Consensus       302 vRl~~iD  308 (317)
                      +||||||
T Consensus       221 ~Rl~~id  227 (227)
T PF07059_consen  221 VRLNHID  227 (227)
T ss_pred             EEeeecC
Confidence            9999998



>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 46/372 (12%), Positives = 104/372 (27%), Gaps = 94/372 (25%)

Query: 9   VSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNS-- 66
           + +  +P    ++L +L ++      +++     + L+     + L      K   N   
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 67  -----WSPIEPSTFRVRGQNYL--RDKKKDFAPNFAAYCPFAAD----VFLSQRKIDHIA 115
                 +    + F +  +  L  R K+     + A     + D              + 
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 116 RFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFK----------LS 165
           +++D    D   E+ +        P   + I   E+  +G+     +K          + 
Sbjct: 309 KYLDCRPQDLPREVLTT------NPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 166 ESYS-----------KDLPVHFQEHVNRIINDEV------ERVKGFPLDTINSFRER--- 205
            S +             L V F    +  I   +      + +K   +  +N   +    
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV-FPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 206 ---------------LKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYL--GE 248
                          L++  +L N   LH     + I++ YN     +    +      +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIP--KTFDSDDLIPPYLD 470

Query: 249 NYFEIDLDVHRFSYLSRKTFAAFQ----DRFKLCKLDFGLTIQENKTENLPENMLCCIRL 304
            YF        +S++               F++  LDF     E K  +          +
Sbjct: 471 QYF--------YSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHDSTAWNASGSI 520

Query: 305 NE--IDYSNYRQ 314
                    Y+ 
Sbjct: 521 LNTLQQLKFYKP 532


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00