Citrus Sinensis ID: 021141
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| 225452618 | 532 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.595 | 0.722 | 1e-130 | |
| 296087747 | 479 | unnamed protein product [Vitis vinifera] | 1.0 | 0.661 | 0.722 | 1e-130 | |
| 255552782 | 483 | conserved hypothetical protein [Ricinus | 0.993 | 0.652 | 0.696 | 1e-129 | |
| 224140901 | 478 | predicted protein [Populus trichocarpa] | 1.0 | 0.663 | 0.685 | 1e-126 | |
| 356497824 | 512 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.619 | 0.671 | 1e-126 | |
| 255558294 | 512 | conserved hypothetical protein [Ricinus | 0.949 | 0.587 | 0.707 | 1e-125 | |
| 356501948 | 513 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.586 | 0.691 | 1e-124 | |
| 449461897 | 439 | PREDICTED: uncharacterized protein LOC10 | 0.955 | 0.690 | 0.689 | 1e-124 | |
| 356550490 | 512 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.609 | 0.669 | 1e-122 | |
| 224110962 | 551 | predicted protein [Populus trichocarpa] | 0.949 | 0.546 | 0.681 | 1e-122 |
| >gi|225452618|ref|XP_002276119.1| PREDICTED: uncharacterized protein LOC100266380 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/317 (72%), Positives = 264/317 (83%)
Query: 1 MSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLE 60
+SS DK R SP P A+RK +LSFK +EGH F PK LLQRP AGS + FCP
Sbjct: 216 VSSVDKRRSLSPSHPIARRKPSLKLSFKRREGHATPPLFSPKALLQRPLAGSQIPFCPPG 275
Query: 61 KKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDL 120
KKMS+SWS +EPSTF+VRG NYLRDKKKDFAPN+AA+ PF DVFLS RKI+HIARFV+L
Sbjct: 276 KKMSDSWSTLEPSTFKVRGPNYLRDKKKDFAPNYAAFYPFGFDVFLSPRKINHIARFVEL 335
Query: 121 PVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHV 180
P ++SS LP ILVVNLQIPLYPA+IFQ ENDGEGM+ VLYFKLSES+SK+LP+HFQE++
Sbjct: 336 PAVNSSGILPPILVVNLQIPLYPASIFQSENDGEGMSFVLYFKLSESFSKELPLHFQENI 395
Query: 181 NRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRP 240
R+I+DEVERV+GF +DTI FRERLKIL RLVN EDLHLS E+K++N YNEKPVLSRP
Sbjct: 396 RRLIDDEVERVRGFAVDTIAPFRERLKILGRLVNMEDLHLSAAERKLMNAYNEKPVLSRP 455
Query: 241 QHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLC 300
QHEFYLGENYFEIDLD+HRFSY+SRK F AFQDR K C LDFGLTIQ NK E+LPEN+LC
Sbjct: 456 QHEFYLGENYFEIDLDMHRFSYISRKGFEAFQDRLKHCILDFGLTIQGNKAEDLPENILC 515
Query: 301 CIRLNEIDYSNYRQLGV 317
C+RLNEIDY+N+ QLG
Sbjct: 516 CMRLNEIDYANHNQLGC 532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087747|emb|CBI35003.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255552782|ref|XP_002517434.1| conserved hypothetical protein [Ricinus communis] gi|223543445|gb|EEF44976.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224140901|ref|XP_002323816.1| predicted protein [Populus trichocarpa] gi|118482376|gb|ABK93111.1| unknown [Populus trichocarpa] gi|222866818|gb|EEF03949.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356497824|ref|XP_003517757.1| PREDICTED: uncharacterized protein LOC100787325 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255558294|ref|XP_002520174.1| conserved hypothetical protein [Ricinus communis] gi|223540666|gb|EEF42229.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356501948|ref|XP_003519785.1| PREDICTED: uncharacterized protein LOC100819425 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449461897|ref|XP_004148678.1| PREDICTED: uncharacterized protein LOC101209394 [Cucumis sativus] gi|449519689|ref|XP_004166867.1| PREDICTED: uncharacterized protein LOC101231709 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356550490|ref|XP_003543620.1| PREDICTED: uncharacterized protein LOC100797844 isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224110962|ref|XP_002315697.1| predicted protein [Populus trichocarpa] gi|222864737|gb|EEF01868.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| TAIR|locus:2012848 | 485 | AT1G10410 [Arabidopsis thalian | 0.987 | 0.645 | 0.642 | 1e-109 | |
| TAIR|locus:2202877 | 492 | CW14 "AT1G59650" [Arabidopsis | 0.993 | 0.640 | 0.636 | 3.5e-107 | |
| TAIR|locus:2093868 | 513 | AT3G29180 "AT3G29180" [Arabido | 0.981 | 0.606 | 0.528 | 4.9e-85 | |
| TAIR|locus:2175648 | 511 | AT5G39430 "AT5G39430" [Arabido | 0.987 | 0.612 | 0.493 | 3.3e-79 | |
| TAIR|locus:2014819 | 504 | AT1G13970 "AT1G13970" [Arabido | 0.854 | 0.537 | 0.519 | 8.1e-76 | |
| TAIR|locus:2102465 | 733 | AT3G54800 [Arabidopsis thalian | 0.255 | 0.110 | 0.310 | 2.1e-05 | |
| TAIR|locus:2198866 | 313 | AT1G06050 "AT1G06050" [Arabido | 0.299 | 0.303 | 0.271 | 0.00032 | |
| TAIR|locus:2179255 | 269 | AT5G25020 "AT5G25020" [Arabido | 0.268 | 0.315 | 0.293 | 0.00056 | |
| TAIR|locus:2057547 | 737 | AT2G28320 [Arabidopsis thalian | 0.233 | 0.100 | 0.324 | 0.00068 |
| TAIR|locus:2012848 AT1G10410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 201/313 (64%), Positives = 250/313 (79%)
Query: 3 SDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKK 62
S DK R S P +++K RLS+K++EGH + F K+ L+RP AGS + FCP++KK
Sbjct: 168 SIDKRRSLSSSPPSSRKKSSLRLSYKWREGHASGALFLSKMQLKRPIAGSQVPFCPIDKK 227
Query: 63 MSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPV 122
M + WS I+P++FRVRG+ YLR+KKK+FAP+ AAY PF DVFLS+ KI H+A++V LPV
Sbjct: 228 MLDCWSTIDPNSFRVRGKTYLREKKKEFAPSHAAYNPFGVDVFLSEHKIHHVAQYVKLPV 287
Query: 123 IDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNR 182
+S +LPSILVVN+QIPLYP AIFQGE+DGEGMN+VLYFKLS++YSK+LP+HFQE + R
Sbjct: 288 TTTSTKLPSILVVNVQIPLYPTAIFQGESDGEGMNIVLYFKLSDNYSKELPLHFQESIRR 347
Query: 183 IINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQH 242
+I+DEVE+VKGFPLDT FRERLKIL R+ N +DLHLS EKK++ YNEKPVLSRPQH
Sbjct: 348 LIDDEVEKVKGFPLDTTAPFRERLKILGRVANVDDLHLSGPEKKLMQAYNEKPVLSRPQH 407
Query: 243 EFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI 302
EFYLG+NYFEID+D+HRF Y+SRK F F DR K+C LD GLTIQ NK E LPE +LCC+
Sbjct: 408 EFYLGDNYFEIDIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPEELPEQILCCV 467
Query: 303 RLNEIDYSNYRQL 315
RLN ID+ NY QL
Sbjct: 468 RLNGIDFMNYHQL 480
|
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| TAIR|locus:2202877 CW14 "AT1G59650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2093868 AT3G29180 "AT3G29180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2175648 AT5G39430 "AT5G39430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014819 AT1G13970 "AT1G13970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2198866 AT1G06050 "AT1G06050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2179255 AT5G25020 "AT5G25020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2057547 AT2G28320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00020834001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (370 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| pfam07059 | 215 | pfam07059, DUF1336, Protein of unknown function (D | 5e-76 |
| >gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 5e-76
Identities = 98/246 (39%), Positives = 128/246 (52%), Gaps = 35/246 (14%)
Query: 67 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVID-S 125
WS +PSTF+VRG+ YL+DKKK A N Y D F S +KIDHIA DL V +
Sbjct: 1 WSEPDPSTFKVRGKTYLKDKKKIPAGNPL-YTLIGVDWFKSDKKIDHIANHPDLRVQKAA 59
Query: 126 SEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIIN 185
+ LP +L+VN+Q+P GEG +LVLYF L E K+L F + R ++
Sbjct: 60 KKGLPFVLIVNIQVP-----------GGEGYSLVLYFALEEPVEKELSPAFGSLLRRFVD 108
Query: 186 -DEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVL--SRPQH 242
DE F ERLKI+ R+V G S ++++ YNEKP L PQ
Sbjct: 109 GDE----DAFR-------NERLKIIPRIVKG-----SWIVRQLV--YNEKPCLVGKAPQC 150
Query: 243 EFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI 302
+Y G NY EID+D+ S ++RK F LD TIQ E LPE +L +
Sbjct: 151 NYYRGPNYLEIDVDIGS-SSIARKGLELFLGYLTNLVLDLAFTIQGQTEEELPERLLGAV 209
Query: 303 RLNEID 308
RLN+ID
Sbjct: 210 RLNKID 215
|
This family represents the C-terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function. Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| PF07059 | 227 | DUF1336: Protein of unknown function (DUF1336); In | 100.0 | |
| PLN00188 | 719 | enhanced disease resistance protein (EDR2); Provis | 100.0 |
| >PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-79 Score=562.57 Aligned_cols=222 Identities=43% Similarity=0.747 Sum_probs=209.8
Q ss_pred cccCCCCCeEEcCCCccCCCccccCCCCCccceeeeeEeeeCcccccccccCCCccccCCC-CCCcEEEEEEEcCCCccc
Q 021141 67 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSE-ELPSILVVNLQIPLYPAA 145 (317)
Q Consensus 67 Ws~~~~~~F~VRG~~Yl~dkkK~pa~~~~l~~lvgvDlf~s~~ki~hIa~~~~lp~~~~~~-~~P~~fIVNlqvP~~p~~ 145 (317)
||+|++++|+|||+||++||||+||+++ +|+++|||||+|++|++|||+|++++.+.... +.||+||||+|||+||++
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999995 99999999999999999999999999887654 589999999999999999
Q ss_pred ccCCCCCCCceEEEEEEeeCccccCCCCcchHhHhhhhhhhhhhhhcCCCCCChhhhh-hhcceeeeeeCCCcccchhhH
Q 021141 146 IFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFR-ERLKILSRLVNGEDLHLSTTE 224 (317)
Q Consensus 146 ~f~~~~dg~g~slV~Yf~~~~~~~~~l~~~f~~~~~rf~~~eve~vkgf~~d~~d~fR-~RfKlIp~Vvng~~i~l~~~~ 224 (317)
+| ++.||+|||+|+||++++++.++.++++.++++||++++ +.+|+|| +||||||+|+||+|+
T Consensus 80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------ 143 (227)
T PF07059_consen 80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------ 143 (227)
T ss_pred cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence 99 999999999999999999998888888999999999843 1228999 999999999999998
Q ss_pred HHHHhhc-CCeeeeecC--ceeeecCCCeEEEEEeecCchHHHHHHHHHhhhccceeEEeeeEeeecCCCCCCccceece
Q 021141 225 KKILNTY-NEKPVLSRP--QHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCC 301 (317)
Q Consensus 225 ~~l~~av-n~KPvLi~~--~~~y~~G~nYlEiDvDI~sfS~vAr~~l~~~~~~~k~lvvD~gf~IEg~~~eELPE~lLG~ 301 (317)
+++++ |+||||+|+ +|+||+|+||||||||||+ |+|||+++++|++|+|+|+|||||+|||+++||||||||||
T Consensus 144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~ 220 (227)
T PF07059_consen 144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC 220 (227)
T ss_pred --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence 67777 999999985 9999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEecccc
Q 021141 302 IRLNEID 308 (317)
Q Consensus 302 vRl~~iD 308 (317)
+||||||
T Consensus 221 ~Rl~~id 227 (227)
T PF07059_consen 221 VRLNHID 227 (227)
T ss_pred EEeeecC
Confidence 9999998
|
|
| >PLN00188 enhanced disease resistance protein (EDR2); Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-08
Identities = 46/372 (12%), Positives = 104/372 (27%), Gaps = 94/372 (25%)
Query: 9 VSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNS-- 66
+ + +P ++L +L ++ +++ + L+ + L K N
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 67 -----WSPIEPSTFRVRGQNYL--RDKKKDFAPNFAAYCPFAAD----VFLSQRKIDHIA 115
+ + F + + L R K+ + A + D +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 116 RFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFK----------LS 165
+++D D E+ + P + I E+ +G+ +K +
Sbjct: 309 KYLDCRPQDLPREVLTT------NPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 166 ESYS-----------KDLPVHFQEHVNRIINDEV------ERVKGFPLDTINSFRER--- 205
S + L V F + I + + +K + +N +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV-FPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 206 ---------------LKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYL--GE 248
L++ +L N LH + I++ YN + + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIP--KTFDSDDLIPPYLD 470
Query: 249 NYFEIDLDVHRFSYLSRKTFAAFQ----DRFKLCKLDFGLTIQENKTENLPENMLCCIRL 304
YF +S++ F++ LDF E K + +
Sbjct: 471 QYF--------YSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHDSTAWNASGSI 520
Query: 305 NE--IDYSNYRQ 314
Y+
Sbjct: 521 LNTLQQLKFYKP 532
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00