Citrus Sinensis ID: 021147
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.892 | 0.492 | 0.620 | 1e-103 | |
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.943 | 0.713 | 0.571 | 1e-100 | |
| 225470035 | 384 | PREDICTED: uncharacterized protein LOC10 | 0.851 | 0.703 | 0.614 | 6e-97 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.873 | 0.635 | 0.581 | 9e-94 | |
| 356567802 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.870 | 0.643 | 0.532 | 3e-85 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.864 | 0.562 | 0.543 | 2e-84 | |
| 357505165 | 475 | hypothetical protein MTR_7g055720 [Medic | 0.930 | 0.621 | 0.509 | 3e-83 | |
| 388500938 | 474 | unknown [Medicago truncatula] | 0.930 | 0.622 | 0.509 | 4e-83 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.801 | 0.530 | 0.494 | 2e-70 | |
| 42566738 | 481 | P-loop containing nucleoside triphosphat | 0.801 | 0.528 | 0.468 | 4e-65 |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/316 (62%), Positives = 224/316 (70%), Gaps = 33/316 (10%)
Query: 35 EGSRDSWDSL---VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVG 91
EGSR L +Q++ +REVLQSYDQL+ R SL + K+KILSYTPG W+ENV
Sbjct: 84 EGSRIPSSFLELQANQKKASTAYREVLQSYDQLKDRSKSLEEGKSKILSYTPGGWMENVI 143
Query: 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151
GM LSD+DVP TT LL+IGPKGSGKSSL+NRISKVFE+DKFASERAQV+YNSS DGTYF
Sbjct: 144 GMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDDKFASERAQVSYNSSAADGTYF 203
Query: 152 LQEYTIPR------------------------------GVRHGELVIRRSDSSSLRNRMR 181
LQEY IPR GV H EL+IR SD+S LRN+M+
Sbjct: 204 LQEYMIPRSSSSFCLYDTRGLSYDSYDSANMLKNWITKGVHHRELIIRPSDNSHLRNQMK 263
Query: 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 241
CKA GC+ R V FVIFVVDGLAVLKSM+ D K+Y Q++A TF+CPY+SF DD
Sbjct: 264 CKARGNGCQSKETRMVTFVIFVVDGLAVLKSMDNLVDEGKKYTQMIAKTFDCPYISFNDD 323
Query: 242 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 301
KPVVVVTHGDLLSL DRAR+R +LGELLGIPPAKQIFDIPES DP EL IV+ML Y LE
Sbjct: 324 KPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAKQIFDIPESHDPVTELTIVNMLHYSLE 383
Query: 302 HADRNLSCKSCARNKV 317
HAD+NL K KV
Sbjct: 384 HADKNLPHKRQIAKKV 399
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/334 (57%), Positives = 232/334 (69%), Gaps = 35/334 (10%)
Query: 9 RFFTPEGEEIISPV-DDFDIPLLSGDDEGSR----DSWDSLVDQRRRDAVFREVLQSYDQ 63
+ + P G+ + V +++ + ++ G R S + +QR++ F+E+LQSYDQ
Sbjct: 28 QLYHPSGKHDVERVNEEYGLAFGEFEEVGCRVLSPTSLEVEANQRKKWKAFKELLQSYDQ 87
Query: 64 LRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123
LR+R SL +AK+KILSYTPG W E VGGM LSDY+VPKTT+LLL+GP+GSGKSSLVNRI
Sbjct: 88 LRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRI 147
Query: 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP------------------------- 158
SKVF++DKFA ERAQV+YN S G+GTYFLQEY IP
Sbjct: 148 SKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSFCLYDTRGFFDNSYDNIEML 207
Query: 159 -----RGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 213
RGV HGEL +R+ D SSLR RM+CK G + R VNFVIFVV+GLAVLKSM
Sbjct: 208 KYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKNRTVNFVIFVVNGLAVLKSM 267
Query: 214 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP 273
+ + QY ++A+ FNCPY SF+DDKPVVVVTHGDLLSL+DR RIR +LGELLGIPP
Sbjct: 268 GSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPP 327
Query: 274 AKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 307
AKQIFDIPES DP EL I+DMLRY LEHAD NL
Sbjct: 328 AKQIFDIPESCDPVTELTIIDMLRYSLEHADNNL 361
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera] gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 185/301 (61%), Positives = 214/301 (71%), Gaps = 31/301 (10%)
Query: 47 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106
QRRR V+ ++LQSYD +R R +L AK++ILSYTPGAWIE GGM SDY+VP+TTSL
Sbjct: 28 QRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSL 87
Query: 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG------ 160
+L+GPKGSGKSSL+N+IS+VFE+DKFA ERAQV+YN SVGDGTYFLQEY IPRG
Sbjct: 88 ILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCL 147
Query: 161 ------------------------VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 196
VRHGEL IR SDS S+R RM+CKA + G S R
Sbjct: 148 YDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRL 207
Query: 197 VNFVIFVVDGLAVLKSMEGDSDVEKQ-YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSL 255
VNFVIFVV+GL+VLKS++ D Q Y Q +A F CPYLSFRDD PVVVVTHGDLLSL
Sbjct: 208 VNFVIFVVNGLSVLKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSL 267
Query: 256 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSCARN 315
+DRAR+R +LGE LGI P KQIFDIPES EL I+DMLRY LEHADRNL CK +
Sbjct: 268 SDRARVRVHLGEHLGISPGKQIFDIPESCGKATELTIIDMLRYSLEHADRNLPCKGWFLD 327
Query: 316 K 316
K
Sbjct: 328 K 328
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 179/308 (58%), Positives = 217/308 (70%), Gaps = 31/308 (10%)
Query: 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGG 92
+ E S + D + + RR+ V RE+++SYDQLR R +L AK KILSY+PGAWIE VGG
Sbjct: 67 ESEYSSAALDVDICRMRRNRVHREIIESYDQLRIRSENLNQAKQKILSYSPGAWIEQVGG 126
Query: 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152
M LSDYD+P+TTSL+LIGPKGSGKSSL+NRISKVFE D FA ERAQV+ NSS DGT+FL
Sbjct: 127 MKLSDYDIPQTTSLILIGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFL 186
Query: 153 QEYTIPR------------------------------GVRHGELVIRRSDSSSLRNRMRC 182
EY I R GV HG+LV R+SD+SSL NRMRC
Sbjct: 187 HEYMILRKSKSFCLYDTRGLSNDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRC 246
Query: 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 242
KA + V+R +NFVIFVVDGL+VLKS++GD D +K Y++++ T FNCPYLS+ DDK
Sbjct: 247 KARQSFPRSRVVRIINFVIFVVDGLSVLKSIDGD-DKQKDYDRVITTAFNCPYLSYGDDK 305
Query: 243 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 302
PVVV+THGDLLS + R+R +LG LLGIP KQIFDIP+ DP EL I+DML YCLEH
Sbjct: 306 PVVVLTHGDLLSFAENVRVRGHLGNLLGIPSTKQIFDIPDRYDPVTELTIIDMLHYCLEH 365
Query: 303 ADRNLSCK 310
AD+NL K
Sbjct: 366 ADKNLPPK 373
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/308 (53%), Positives = 204/308 (66%), Gaps = 32/308 (10%)
Query: 42 DSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101
D V++RRR ++E+LQ D+L+ L K KIL Y PGAWIE GG+ +SDYDVP
Sbjct: 67 DFEVNERRRVINYQEILQCCDELKIHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVP 126
Query: 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPR-- 159
KTT LLL+GP+GSGKSSL+NRISKV E+D+FA RAQ +YNS +GDGT FLQEY IPR
Sbjct: 127 KTTCLLLVGPRGSGKSSLINRISKVVEDDRFAPARAQESYNSLLGDGTSFLQEYMIPRYS 186
Query: 160 ------------------------------GVRHGELVIRRSDSSSLRNRMRCKAHKIGC 189
GV HGELV+R++D+ LR ++ KAHK G
Sbjct: 187 NSICLYDTRSLSDNSEKDENIRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGY 246
Query: 190 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249
S RKVNFVI+VV+GL VLK+ME D +E Q Q + +TFNCP+LSF+DDKPV+V TH
Sbjct: 247 LSSKTRKVNFVIYVVNGLLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTH 306
Query: 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSC 309
GDLLS ++RA +R +LG LLGIPP KQIFDIP+ P E I+ MLRY L HADR+
Sbjct: 307 GDLLSFSERALVREHLGTLLGIPPTKQIFDIPDCDCPATESAIIGMLRYSLAHADRHFPQ 366
Query: 310 KSCARNKV 317
+S +KV
Sbjct: 367 RSKVMDKV 374
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/307 (54%), Positives = 210/307 (68%), Gaps = 33/307 (10%)
Query: 44 LVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103
+V +R+R ++++E+LQSYD+L+ SL AK KIL Y PG WIE G+ L DYDVP+T
Sbjct: 65 VVGERKRLSIYQEILQSYDELKIDSISLKQAKEKILRYRPGTWIEKARGLKLRDYDVPET 124
Query: 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPR---- 159
TSL+L+GP GSGKSSL+NRISKVF++DKFA RAQV+YNS GDGTYFL+E+ IPR
Sbjct: 125 TSLILVGPSGSGKSSLINRISKVFDDDKFAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS 184
Query: 160 --------------------------GVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 193
GV HGELVIR D+ +L ++CK +K G S
Sbjct: 185 ICLYDTRSLSNKSHENNEMLKNWMTEGVHHGELVIRSKDNQTLTESLKCKGNKKGFFSSK 244
Query: 194 IRKVNFVIFVVDGLAVLKSME-GDSDVEKQY-NQIVAT-TFNCPYLSFRDDKPVVVVTHG 250
RKVNFVI+V++GL+VL ME D + +Y +IV+T FN P+LSF+DDKPV+V+THG
Sbjct: 245 SRKVNFVIYVLNGLSVLNMMENADGAFKARYIEEIVSTFNFNNPFLSFKDDKPVLVLTHG 304
Query: 251 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 310
DLLSL+DRAR+R YLGE+LGIPP KQIFDIPE D E I+ MLRY LEHAD N+ K
Sbjct: 305 DLLSLSDRARVRVYLGEVLGIPPTKQIFDIPECDDLVTESAIIGMLRYTLEHADNNIPQK 364
Query: 311 SCARNKV 317
+ NKV
Sbjct: 365 TNVMNKV 371
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula] gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 210/326 (64%), Gaps = 31/326 (9%)
Query: 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYT 82
++ D +S + + + DS++ +R+R +++E+LQSYD L+ +L +AK KILSY
Sbjct: 50 NELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYR 109
Query: 83 PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142
PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YN
Sbjct: 110 PGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYN 169
Query: 143 SSVGDGTYFLQEYTIPR------------------------------GVRHGELVIRRSD 172
S G+GT FL+EY IPR GVRHGELV R D
Sbjct: 170 SIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMD 229
Query: 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTF 231
L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y Q + +TF
Sbjct: 230 DKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTF 289
Query: 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 291
NCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E
Sbjct: 290 NCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESA 349
Query: 292 IVDMLRYCLEHADRNLSCKSCARNKV 317
IV MLRY LEHAD N KS NK+
Sbjct: 350 IVGMLRYTLEHADGNFPQKSNVMNKI 375
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 210/326 (64%), Gaps = 31/326 (9%)
Query: 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYT 82
++ D +S + + + DS++ +R+R +++E+LQSYD L+ +L +AK KILSY
Sbjct: 50 NELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYR 109
Query: 83 PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142
PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YN
Sbjct: 110 PGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYN 169
Query: 143 SSVGDGTYFLQEYTIPR------------------------------GVRHGELVIRRSD 172
S G+GT FL+EY IPR GVRHGELV R D
Sbjct: 170 SIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMD 229
Query: 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTF 231
L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y Q + +TF
Sbjct: 230 DKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTF 289
Query: 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 291
NCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E
Sbjct: 290 NCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESA 349
Query: 292 IVDMLRYCLEHADRNLSCKSCARNKV 317
IV MLRY LEHAD N KS NK+
Sbjct: 350 IVGMLRYTLEHADGNFPQKSNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/299 (49%), Positives = 193/299 (64%), Gaps = 45/299 (15%)
Query: 42 DSLVDQRRRDAVFREVLQSYD-QLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100
+ + D RRR+ ++E+LQSYD LR+ L A+N+IL YTPG+W + + LSDYDV
Sbjct: 47 NHVTDLRRREKSYQEILQSYDVLLRSSKRKLRQARNEILRYTPGSWSD----VKLSDYDV 102
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
PKTTS++L+GPKG+GKSSLVN+IS+V E+D+F RAQ ++ + GT+F+QEY IPRG
Sbjct: 103 PKTTSIMLVGPKGAGKSSLVNKISRVIEDDEFFPARAQESFGTQSKGGTFFVQEYMIPRG 162
Query: 161 --------------------------------VRHGELVIRRSDSSSLRNRMRCKAHKIG 188
V HGE VI SDSS L++R+ + G
Sbjct: 163 GSASFCLYDTRGLSHISSSDNTRMIEQWMTKGVHHGEPVIWTSDSSDLKDRL-IRDGGTG 221
Query: 189 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248
E RKVN VIFV++ + +LKSME E Y +++T FNCP LSF+DDKP VV+T
Sbjct: 222 YER---RKVNSVIFVINAVEILKSME----CETSYAHMISTAFNCPLLSFKDDKPAVVMT 274
Query: 249 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 307
HGD+LSL DRAR+R +LGELLGIPPAKQIFDIPES D L I ++L Y L+HAD+N
Sbjct: 275 HGDMLSLEDRARVRVFLGELLGIPPAKQIFDIPESRDIATALTICNLLCYSLDHADKNF 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566738|ref|NP_193039.3| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657819|gb|AEE83219.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 188/299 (62%), Gaps = 45/299 (15%)
Query: 42 DSLVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100
+ + D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++
Sbjct: 48 NHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNI 103
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
PKTTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG
Sbjct: 104 PKTTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRG 163
Query: 161 --------------------------------VRHGELVIRRSDSSSLRNRMRCKAHKIG 188
V HGE VI SDSS L++R+ + G
Sbjct: 164 GSASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTG 222
Query: 189 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248
E RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+T
Sbjct: 223 YER---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMT 275
Query: 249 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 307
HGD+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 276 HGDMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNF 334
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.485 | 0.320 | 0.509 | 1.1e-66 | |
| ZFIN|ZDB-GENE-030131-9145 | 313 | si:dkey-79f11.5 "si:dkey-79f11 | 0.211 | 0.214 | 0.423 | 0.00036 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 83/163 (50%), Positives = 109/163 (66%)
Query: 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 203
S D T ++++ + RGV HGE VI SDSS L++R+ + G E RKVN +IFV
Sbjct: 180 SSSDNTSMIEQW-MTRGVLHGEPVIWASDSSDLKDRL-IRDGGTGYER---RKVNSIIFV 234
Query: 204 VDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRT 263
V+ + +LKSME E Y ++ T FN P L F+DDKP VV+THGD+LS +RAR+R
Sbjct: 235 VNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMTHGDMLSREERARVRV 290
Query: 264 YLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN 306
+LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 291 FLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKN 333
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| ZFIN|ZDB-GENE-030131-9145 si:dkey-79f11.5 "si:dkey-79f11.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 86 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145
W+EN TLSD +V K +L++GP G+GKSS +N I+ VF+ + S +A V NS+
Sbjct: 57 WLEN---FTLSDPNV-KDIKILVVGPSGAGKSSFINSINSVFQ--RRISSKALV--NSAG 108
Query: 146 GDGTYF---LQEYTIPRG 160
GD F L+ TI G
Sbjct: 109 GDNHSFTEKLKRLTIKNG 126
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 317 317 0.00083 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 605 (64 KB)
Total size of DFA: 212 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.77u 0.14s 26.91t Elapsed: 00:00:02
Total cpu time: 26.77u 0.14s 26.91t Elapsed: 00:00:02
Start: Sat May 11 03:29:34 2013 End: Sat May 11 03:29:36 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_II002486 | hypothetical protein (575 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 317 | |||
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 4e-04 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.002 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 105 SLLLIGPKGSGKSSLVNRISKVFENDKF-------ASERAQVTYNSSVGDGTYFLQEYTI 157
+LL+GP G+GKS L R++ N + + ++ G + +
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60
Query: 158 PRGVRHGELVI 168
R R GE+ +
Sbjct: 61 VRAAREGEIAV 71
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This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 38/160 (23%)
Query: 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGEL 166
+++G G GKSSL+N + S+ T + V + + L
Sbjct: 1 VVVGRGGVGKSSLLNALLG--GEVGEVSDVPGTTRDPDVYVKELDKGKVKL-------VL 51
Query: 167 V----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 222
V + R ++R + ++ VVD S + +S+ + +
Sbjct: 52 VDTPGLDEFGGLGREELAR----------LLLRGADLILLVVD------STDRESEEDAK 95
Query: 223 YNQIVATTFNCPYLSFRDDKPVVVV-THGDLLSLTDRARI 261
+ ++ P+++V DLL + +
Sbjct: 96 LLILR--------RLRKEGIPIILVGNKIDLLEEREVEEL 127
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Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.93 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.93 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.93 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.9 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.88 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.88 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.87 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.87 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.86 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.85 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.85 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.85 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.84 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.83 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.81 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.8 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.79 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.79 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.79 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.78 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.78 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.77 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.75 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.75 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.75 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.74 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.72 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.72 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.72 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.66 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.62 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.59 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.58 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.5 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.49 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.49 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.46 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.43 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.43 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.42 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.4 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.4 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.38 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.38 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.36 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.32 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.26 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.26 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.21 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.11 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.1 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.07 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.06 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.05 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.01 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.99 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.92 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.91 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.88 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.87 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.87 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.86 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.86 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.84 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.83 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.82 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.78 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.75 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.68 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.63 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.63 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.62 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.56 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.54 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.51 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 98.5 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.5 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.48 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 98.48 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 98.45 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 98.45 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.44 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 98.44 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.41 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.39 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.38 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.37 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.35 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.32 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.32 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.31 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.31 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.3 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.29 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.23 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.19 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.19 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.19 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.18 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.18 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.17 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 98.17 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.16 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.15 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.15 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.13 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.13 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.12 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.12 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.12 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 98.12 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.1 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.07 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 98.06 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.06 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.04 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.02 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 98.02 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 98.02 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 98.02 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 98.01 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 98.01 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.01 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.0 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.99 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.99 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 97.96 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 97.95 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.95 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.95 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.92 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 97.92 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.91 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=394.14 Aligned_cols=227 Identities=16% Similarity=0.214 Sum_probs=204.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC-------CCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
.+..........|..+.+..-+..|++|+++.+|.++.. ..+.|+|+||+|.|+.+... .+|+|+||+|+
T Consensus 416 ~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~---~Vlk~lsfti~ 492 (716)
T KOG0058|consen 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDV---PVLKNLSFTIR 492 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCc---hhhcCceeeeC
Confidence 456677788889999999999999999999998887553 34679999999999876431 12999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
|||++|||||||+||||++++|.++|+ |++|+|.+||.+ +++++...+|++
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~-----PtsG~IllDG~~----------------------i~~~~~~~lr~~-- 543 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYD-----PTSGRILLDGVP----------------------ISDINHKYLRRK-- 543 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCee----------------------hhhcCHHHHHHH--
Confidence 999999999999999999999999999 999999999998 889999999988
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
||+|.|+|.+|.. ||+|||.++... ..++.+..+|+.+++| +..+|+||+|.+|||| .+|||||
T Consensus 544 -----Ig~V~QEPvLFs~--sI~eNI~YG~~~-----~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG--~qLSGGQ 609 (716)
T KOG0058|consen 544 -----IGLVGQEPVLFSG--SIRENIAYGLDN-----ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG--SQLSGGQ 609 (716)
T ss_pred -----eeeeeccceeecc--cHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCccccccccCCcc--ccccchH
Confidence 9999999999976 999999998763 3445589999999996 7779999999999999 9999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
||||||||||+++|.+|||||+|| ||.++|..+++++.++.+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 999999999999999999999999 999999999999988754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=388.77 Aligned_cols=225 Identities=17% Similarity=0.194 Sum_probs=203.9
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC--------CCCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
.+.+|+.+..+.|..+++.+.+..|+.++++.+++.... ..+.|+++||+|+|+...+.+ |+|+||+|
T Consensus 421 ~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~v----L~~isL~I 496 (709)
T COG2274 421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPV----LEDLSLEI 496 (709)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcch----hhceeEEe
Confidence 577899999999999999999999999999988774331 235699999999997664432 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||++||||+||||||||+|+|.|+|. |++|+|++||.+ +.+.+...+|++
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~d----------------------l~~i~~~~lR~~- 548 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVD----------------------LNDIDLASLRRQ- 548 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEe----------------------HHhcCHHHHHhh-
Confidence 9999999999999999999999999999 999999999988 788999999998
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
||||+|++.+|.+ |++||++++++.... +++.++|+.++++ +..+|.||.+.++|+| ..||||
T Consensus 549 ------ig~V~Q~~~Lf~g--SI~eNi~l~~p~~~~-----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G--~~LSGG 613 (709)
T COG2274 549 ------VGYVLQDPFLFSG--SIRENIALGNPEATD-----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGG--ANLSGG 613 (709)
T ss_pred ------eeEEcccchhhcC--cHHHHHhcCCCCCCH-----HHHHHHHHHhCcHHHHHhcccccccccccCC--CCCCHH
Confidence 9999999998876 999999988765443 3499999999996 6678999999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
||||++||||+.++|+++||||||| ||+.+|+.+.+.+.++.
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999 99999999999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=327.19 Aligned_cols=197 Identities=19% Similarity=0.253 Sum_probs=167.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++.+ + |++|||+|++||+++|+||||||||||+|||++|.. |++|+|+++|.+.
T Consensus 1 ~mi~i~~l~K~fg~~~-V-----Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~--- 66 (240)
T COG1126 1 MMIEIKNLSKSFGDKE-V-----LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDV--- 66 (240)
T ss_pred CeEEEEeeeEEeCCeE-E-----ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEec---
Confidence 4799999999998664 3 999999999999999999999999999999999999 9999999999751
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~ 227 (317)
....+...+|++ +|+|||...||+ .+||.+|+.++.... ....+..++..++
T Consensus 67 ------------------~~~~~~~~~R~~-------vGmVFQ~fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~l 120 (240)
T COG1126 67 ------------------GDKKDILKLRRK-------VGMVFQQFNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALEL 120 (240)
T ss_pred ------------------cchhhHHHHHHh-------cCeecccccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHH
Confidence 111245556666 999999999886 799999998765332 2334566778888
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+|+.. ..+.|| .+|||||+||+||||||+.+|++++|||||| |||+....+.+.++++.+.
T Consensus 121 L~~VGL~~--ka~~yP---------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTM 189 (240)
T COG1126 121 LEKVGLAD--KADAYP---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 189 (240)
T ss_pred HHHcCchh--hhhhCc---------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeE
Confidence 99999842 334788 5999999999999999999999999999999 9999999999999998754
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|...++.+++|||
T Consensus 190 ivVTHEM~FAr~Vadrv 206 (240)
T COG1126 190 IIVTHEMGFAREVADRV 206 (240)
T ss_pred EEEechhHHHHHhhheE
Confidence 567788899999986
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=357.73 Aligned_cols=227 Identities=17% Similarity=0.187 Sum_probs=203.8
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
..-+|++.+...|.++..++.+|+|+.++|+..|.... .+.+.+.++++++.-++.+.++ |++|||++.+|
T Consensus 287 RaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pi----l~~isF~l~~G 362 (580)
T COG4618 287 RALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPI----LKGISFALQAG 362 (580)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcc----eecceeEecCC
Confidence 45579999999999999999999999999987665433 3566899999999877665443 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
|.+|||||||||||||.|+|.|.++ |++|.|++||.+ +++|+++++-++
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~----------------------l~qWd~e~lG~h---- 411 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGAD----------------------LRQWDREQLGRH---- 411 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchh----------------------hhcCCHHHhccc----
Confidence 9999999999999999999999999 999999999988 889999999998
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI 261 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q 261 (317)
|||+||+..+|++ ||+|||+-... +.+.+++.++++.++.| +..+|+||+|.|++.| ..|||||||
T Consensus 412 ---iGYLPQdVeLF~G--TIaeNIaRf~~-----~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G--~~LSgGQRQ 479 (580)
T COG4618 412 ---IGYLPQDVELFDG--TIAENIARFGE-----EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG--ATLSGGQRQ 479 (580)
T ss_pred ---cCcCcccceecCC--cHHHHHHhccc-----cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCC--CCCCchHHH
Confidence 9999999999987 99999985432 23445699999999997 6679999999999999 899999999
Q ss_pred hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 262 RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
||++|||++.+|.+++||||.+ ||...|+.+.++|..+++.
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r 521 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999 9999999999999987643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=368.69 Aligned_cols=221 Identities=17% Similarity=0.161 Sum_probs=191.8
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc----------CCCCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
+..+.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++.+.+ |+|+||+
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~v-----L~~isl~ 357 (529)
T TIGR02868 283 AFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPV-----LDGVSLD 357 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCce-----eecceEE
Confidence 4456667777888999999999999999976543211 112359999999999765444 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||.+|||||||||||||+|+|+|+++ |++|+|++||.+ ++++ .+++|++
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~----------------------i~~~-~~~lr~~ 409 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVS----------------------VSSL-QDELRRR 409 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE----------------------hhhH-HHHHHhh
Confidence 99999999999999999999999999999 999999999987 6777 8888887
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+||||++.+|+. ||+|||.++.+.. .++++.++++.++++ +..+|+|+++.++++| ..|||
T Consensus 410 -------i~~V~Q~~~lF~~--TI~eNI~~g~~~~-----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G--~~LSG 473 (529)
T TIGR02868 410 -------ISVFAQDAHLFDT--TVRDNLRLGRPDA-----TDEELWAALERVGLADWLRSLPDGLDTVLGEGG--ARLSG 473 (529)
T ss_pred -------eEEEccCcccccc--cHHHHHhccCCCC-----CHHHHHHHHHHcCCHHHHHhCcccccchhcccc--CcCCH
Confidence 9999999999976 9999999875432 234588999999994 5568999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
|||||++||||++++|+++||||||| ||+++++.+.+.++++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999999875
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=370.23 Aligned_cols=239 Identities=19% Similarity=0.215 Sum_probs=206.6
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
+..+.......+..+..+..+.+|++++++.++..... ..+.|+++||+|.|++++.+ |+|+||+|++|
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~G 355 (567)
T COG1132 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPG 355 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCC
Confidence 34466777788899999999999999999986654332 22459999999999864445 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
|.+|||||||||||||+++|+|+|+ |++|+|++||.+ +++++...+|++
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~d----------------------I~~i~~~~lr~~---- 404 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYD-----PTSGEILIDGID----------------------IRDISLDSLRKR---- 404 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCEe----------------------hhhcCHHHHHHh----
Confidence 9999999999999999999999999 999999999987 888999999998
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI 261 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q 261 (317)
|++|||++.+|+. ||++|+.++++...+ +++.++++.++++ +..+|+|+++.++++| ..|||||||
T Consensus 405 ---I~~V~Qd~~LF~~--TI~~NI~~g~~~at~-----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G--~~LSgGQrQ 472 (567)
T COG1132 405 ---IGIVSQDPLLFSG--TIRENIALGRPDATD-----EEIEEALKLANAHEFIANLPDGYDTIVGERG--VNLSGGQRQ 472 (567)
T ss_pred ---ccEEcccceeecc--cHHHHHhcCCCCCCH-----HHHHHHHHHhChHHHHHhCcccccceecCCC--ccCCHHHHH
Confidence 9999999999985 999999998765433 4589999999885 5567999999999999 899999999
Q ss_pred hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 262 RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|++||||++++|+++||||||| ||+.++..+++.+.++.+. -.|+++-+.+ +|||
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~I 533 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRI 533 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEE
Confidence 9999999999999999999999 9999999999999976533 3466666655 6653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=378.79 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=195.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccccccccC---------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCE
Q 021147 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (317)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~ 105 (317)
..+......+.+++.+..+++++++.+|.+... ..+.|+++||+|.||....+ .+|+|+||+|++|++
T Consensus 942 ~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~---~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 942 GQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDV---PVLNNLSLSIRAGQT 1018 (1228)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCc---hhhcCCcEEecCCCE
Confidence 345556667788999999999999988754331 24569999999999865322 239999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhh
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAH 185 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (317)
+||||||||||||.+.+|-++|+ |++|.|.+||++ +++++.+.+|++
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYd-----p~~G~V~IDg~d----------------------ik~lnl~~LR~~------ 1065 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYD-----PDAGKVKIDGVD----------------------IKDLNLKWLRKQ------ 1065 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCcc----------------------cccCCHHHHHHh------
Confidence 99999999999999999999999 999999999998 889999999998
Q ss_pred hccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhh
Q 021147 186 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRT 263 (317)
Q Consensus 186 ~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl 263 (317)
+|+|.|+|.||+. |++|||+++.. . ..++++.++|+.+++| +..+|+||+|.+|+.| .+|||||||||
T Consensus 1066 -i~lVsQEP~LF~~--TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG--~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1066 -IGLVSQEPVLFNG--TIRENIAYGSE----E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG--VQLSGGQKQRI 1135 (1228)
T ss_pred -cceeccCchhhcc--cHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc--CcCCchHHHHH
Confidence 9999999999986 99999999822 1 3455699999999997 7789999999999999 99999999999
Q ss_pred cccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 264 YLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 264 ~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
|||||+++||++|||||+|| ||.++++.++++|.++..
T Consensus 1136 AIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~ 1174 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174 (1228)
T ss_pred HHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc
Confidence 99999999999999999999 999999999999999753
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=366.23 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=199.1
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------C--CCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
+..|.......|..+.+++.+.+|+.++++.+++... . ..+.|+++||+|.|.+++.+ |+|+||+|+
T Consensus 300 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~v-----L~~i~l~i~ 374 (588)
T PRK11174 300 FYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTL-----AGPLNFTLP 374 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCee-----eeeeEEEEc
Confidence 4567888888899999999999999999976543211 1 12359999999877544444 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+|+++|||||||||||||+++|+|+++ ++|+|++||.+ +++++.+.+|++
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p------~~G~I~i~g~~----------------------i~~~~~~~lr~~-- 424 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLP------YQGSLKINGIE----------------------LRELDPESWRKH-- 424 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC------CCcEEEECCEe----------------------cccCCHHHHHhh--
Confidence 999999999999999999999999993 48999999987 778899999988
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|+||||++.+|+. ||+|||.++++.. .++++.++++.++++ +..+|+|+++.++++| ..|||||
T Consensus 425 -----i~~v~Q~~~LF~~--TI~eNI~~g~~~~-----~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G--~~LSGGQ 490 (588)
T PRK11174 425 -----LSWVGQNPQLPHG--TLRDNVLLGNPDA-----SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA--AGLSVGQ 490 (588)
T ss_pred -----eEEecCCCcCCCc--CHHHHhhcCCCCC-----CHHHHHHHHHHhCHHHHHHhcccccccccccCC--CCCCHHH
Confidence 9999999999976 9999999875322 234588999999985 5568999999999999 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|||++||||++++|+++||||||| ||+.+++.+.+.|+++.+. ..|+++.+.+ +|+
T Consensus 491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~ 552 (588)
T PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQ 552 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCE
Confidence 999999999999999999999999 9999999999999887432 3455655543 555
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=380.39 Aligned_cols=241 Identities=18% Similarity=0.213 Sum_probs=208.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC---------CCCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
+-+-.+..+.+....+..++.++.+++++++..|..... ..+.|+++||+|+||.++.+ ..|+++||+
T Consensus 299 ~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv---~Il~g~sl~ 375 (1228)
T KOG0055|consen 299 IGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDV---KILKGVSLK 375 (1228)
T ss_pred hhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcc---hhhCCeEEE
Confidence 444456778889999999999999999999877665431 34679999999999876421 239999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++|+++||||||||||||++++|.|+|+ |++|+|++||.+ ++.++.+++|++
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~d----------------------i~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGED----------------------IRNLNLKWLRSQ 428 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCcc----------------------chhcchHHHHhh
Confidence 99999999999999999999999999999 999999999998 778898899988
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
||+|+|+|.+|.. ||+|||.++++.+. ++++.++++.++++ +..+|+||.+.++++| .+|||
T Consensus 429 -------iglV~QePvlF~~--tI~eNI~~G~~dat-----~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g--~qLSG 492 (1228)
T KOG0055|consen 429 -------IGLVSQEPVLFAT--TIRENIRYGKPDAT-----REEIEEAAKAANAHDFILKLPDGYDTLVGERG--VQLSG 492 (1228)
T ss_pred -------cCeeeechhhhcc--cHHHHHhcCCCccc-----HHHHHHHHHHccHHHHHHhhHHhhcccccCCC--CCCCh
Confidence 9999999988865 99999999876544 34589999999985 6678999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
||||||||||||+++|++|+|||||| ||+++++.++++|.++.+. -.|+|+-+.+ +|+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~ 556 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADK 556 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCE
Confidence 99999999999999999999999999 9999999999999987642 4456666665 554
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=370.03 Aligned_cols=239 Identities=16% Similarity=0.174 Sum_probs=202.6
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+.+|.......|..++.++.+.+|+.++++.+++.... ..+.|+++||+|+|++. +.+ |+|+||+|+
T Consensus 403 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~v-----L~~isl~i~ 477 (686)
T TIGR03797 403 SFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLI-----LDDVSLQIE 477 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCccc-----eeeeEEEEC
Confidence 456778888899999999999999999999765443211 12469999999999643 334 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||.+||+|+||||||||+|+|+|+|+ |++|+|++||++ +++++...+|++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~lr~~-- 528 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQD----------------------LAGLDVQAVRRQ-- 528 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE----------------------cCcCCHHHHHhc--
Confidence 999999999999999999999999999 999999999987 778899999988
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
||||||++.+|++ |++||+.++++ .. .+++.++++.++++ +..+|+|+++.++++| ..|||||
T Consensus 529 -----i~~v~Q~~~lf~g--TI~eNi~~~~~-~~-----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G--~~LSGGQ 593 (686)
T TIGR03797 529 -----LGVVLQNGRLMSG--SIFENIAGGAP-LT-----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGG--GTLSGGQ 593 (686)
T ss_pred -----cEEEccCCccCcc--cHHHHHhcCCC-CC-----HHHHHHHHHHcCcHHHHHhccccccccccCCC--CCCCHHH
Confidence 9999999999876 99999998754 22 34588999999995 4568999999999999 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
|||+++|||++++|+++||||||| ||+.+++.+.+.++++.+ ...|+++.+.. +|||
T Consensus 594 rQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~I 654 (686)
T TIGR03797 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRI 654 (686)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEE
Confidence 999999999999999999999999 999999999999988621 13455555543 5553
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=326.99 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=169.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++++|+|.|..... ..+.||+||||+|++||++||||.||||||||+|+|++|.. |++|+|.++|++
T Consensus 1 mI~l~~vsK~~~~~~~-~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~d----- 69 (339)
T COG1135 1 MIELENVSKTFGQTGT-GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQD----- 69 (339)
T ss_pred CeEEEeeeeeeccCCC-CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEe-----
Confidence 6999999999975210 01234999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~a~ 229 (317)
+..++...+|+. .++||++||.+.++. ..||++|++|....... ..+.++++.++++
T Consensus 70 -----------------i~~l~~~~Lr~~----R~~IGMIFQhFnLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLe 127 (339)
T COG1135 70 -----------------LTALSEAELRQL----RQKIGMIFQHFNLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLE 127 (339)
T ss_pred -----------------cccCChHHHHHH----HhhccEEeccccccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHH
Confidence 444554444432 233999999998876 58999999997654443 4566788889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+|++. ..+.|+ .+||||||||++|||||+.+|++|+.||||| |||+|.+.|.++|+++.+.
T Consensus 128 lVgL~d--k~~~yP---------~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv 196 (339)
T COG1135 128 LVGLSD--KADRYP---------AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196 (339)
T ss_pred HcCChh--hhccCc---------hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE
Confidence 999853 334688 6999999999999999999999999999999 9999999999999998654
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
-.|..+++...||||
T Consensus 197 lITHEm~Vvk~ic~rV 212 (339)
T COG1135 197 LITHEMEVVKRICDRV 212 (339)
T ss_pred EEechHHHHHHHhhhh
Confidence 456788888999886
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=318.00 Aligned_cols=192 Identities=18% Similarity=0.248 Sum_probs=169.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||||+|++.. + ++|+||+|++||+++++|||||||||++|+|++|++ |++|+|+++|++
T Consensus 1 MI~~~nvsk~y~~~~-a-----v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~----- 64 (309)
T COG1125 1 MIEFENVSKRYGNKK-A-----VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGED----- 64 (309)
T ss_pred CceeeeeehhcCCce-e-----eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCee-----
Confidence 699999999998553 3 999999999999999999999999999999999999 999999999998
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~a~ 229 (317)
+..++..++|++ ||||-|...+|+ ++||.+||++.. ...+......+++.+++.
T Consensus 65 -----------------i~~~d~~~LRr~-------IGYviQqigLFP-h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~ 119 (309)
T COG1125 65 -----------------ISDLDPVELRRK-------IGYVIQQIGLFP-HLTVAENIATVPKLLGWDKERIKKRADELLD 119 (309)
T ss_pred -----------------cccCCHHHHHHh-------hhhhhhhcccCC-CccHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence 778999999998 999999988776 799999998754 345666677888999999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCcc
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNLS 308 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~~ 308 (317)
.++++...+.+.|+ .+|||||+||+.+||||+.+|+++++|||++ |||.++..+++.+.++.+....-+-
T Consensus 120 lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTiv 190 (309)
T COG1125 120 LVGLDPSEYADRYP---------HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190 (309)
T ss_pred HhCCCHHHHhhcCc---------hhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEE
Confidence 99996544556788 6999999999999999999999999999999 9999999999999998776555444
Q ss_pred hhhc
Q 021147 309 CKSC 312 (317)
Q Consensus 309 ~~~~ 312 (317)
++++
T Consensus 191 fVTH 194 (309)
T COG1125 191 FVTH 194 (309)
T ss_pred EEec
Confidence 4443
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=366.33 Aligned_cols=240 Identities=17% Similarity=0.138 Sum_probs=202.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
.+.+|.......|..+..++.+.+|+.++++.+++... ...+.|+++||+|+|++...+ |+|+||+|
T Consensus 423 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~isl~i 497 (708)
T TIGR01193 423 YFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNI-----LSDISLTI 497 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcc-----eeceeEEE
Confidence 45578888889999999999999999999876544321 113469999999999754444 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.+||+|+||||||||+|+|+|+|+ |++|+|++||.+ +++++..++|++
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~lr~~- 549 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFS----------------------LKDIDRHTLRQF- 549 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEE----------------------HHHcCHHHHHHh-
Confidence 9999999999999999999999999999 999999999987 778899999988
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhh-ccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
||||||++.+|+. ||+||+.++. +.. ..+++.++++.++++ +..+|.|+++.+++.| ..|||
T Consensus 550 ------i~~v~Q~~~lf~g--TI~eNi~l~~~~~~-----~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G--~~LSg 614 (708)
T TIGR01193 550 ------INYLPQEPYIFSG--SILENLLLGAKENV-----SQDEIWAACEIAEIKDDIENMPLGYQTELSEEG--SSISG 614 (708)
T ss_pred ------eEEEecCceehhH--HHHHHHhccCCCCC-----CHHHHHHHHHHhCCHHHHHhcccccCcEecCCC--CCCCH
Confidence 9999999998875 9999999863 221 234588999999984 5568899999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH----hcCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE----HADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~----~~~~~~~~~~~~~~~~ 317 (317)
|||||++||||++++|+++||||||+ ||+.+++.+.+.|+++.. ...|+++.+. .+|||
T Consensus 615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i 678 (708)
T TIGR01193 615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKI 678 (708)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEE
Confidence 99999999999999999999999999 999999999999987511 1345555543 35653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=366.67 Aligned_cols=240 Identities=17% Similarity=0.132 Sum_probs=201.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------------CCCCceEEEeEEEEcCCC-CccccccCc
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------------RIGSLTDAKNKILSYTPG-AWIENVGGM 93 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~I~~~nls~~y~~~-~~~~~~~~L 93 (317)
.+.+|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. +.+ |
T Consensus 421 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~v-----L 495 (710)
T TIGR03796 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL-----I 495 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCc-----c
Confidence 45567788889999999999999999999976543211 012369999999999753 334 9
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCCh
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDS 173 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~ 173 (317)
+|+||+|++||.+||||+||||||||+|+|+|+|+ |++|+|++||.+ +++++.
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------i~~~~~ 548 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIP----------------------REEIPR 548 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEe----------------------HHHCCH
Confidence 99999999999999999999999999999999999 999999999987 778898
Q ss_pred HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccc
Q 021147 174 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 174 ~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~ 251 (317)
..+|++ ||||||++.+|+. |++||+.++++.. ..+++.++++.++++ +..+|+|+.+.+++.|
T Consensus 549 ~~lr~~-------i~~v~Q~~~lf~g--Ti~eNi~l~~~~~-----~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 549 EVLANS-------VAMVDQDIFLFEG--TVRDNLTLWDPTI-----PDADLVRACKDAAIHDVITSRPGGYDAELAEGG- 613 (710)
T ss_pred HHHHhh-------eeEEecCChhhhc--cHHHHhhCCCCCC-----CHHHHHHHHHHhCCHHHHHhCcCcccceeccCC-
Confidence 889888 9999999998875 9999998764322 234588899999985 4568899999999999
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
..||||||||+++|||++++|+++||||||| ||+.+++.+.+.+++.-+ ...|+++.+.. +|||
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~I 681 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEI 681 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEE
Confidence 8999999999999999999999999999999 999999999999986310 13455555544 5653
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=357.87 Aligned_cols=238 Identities=16% Similarity=0.109 Sum_probs=201.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC-----CCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
.+..|+......|..+.+.+.+++|+.++++.+++.... ..+.|+++||+|+|++...+ |+|+||+|++|
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~i-----l~~i~l~i~~G 367 (592)
T PRK10790 293 RLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLV-----LQNINLSVPSR 367 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCce-----eeceeEEEcCC
Confidence 455677788888999999999999999998754332111 12459999999999754444 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
|.+||+|+||||||||+|+|+|+++ |++|+|++||.+ +.+++.+.++++
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~l~~~---- 416 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRP----------------------LSSLSHSVLRQG---- 416 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEE----------------------hhhCCHHHHHhh----
Confidence 9999999999999999999999999 999999999987 778899999988
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI 261 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q 261 (317)
|+|+||++.+|+. |+++|+.+++ .. .++++.++++.++++ +..+|+|+++.+++.| ..|||||||
T Consensus 417 ---i~~v~Q~~~lF~~--Ti~~NI~~~~-~~-----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g--~~LSGGqrQ 483 (592)
T PRK10790 417 ---VAMVQQDPVVLAD--TFLANVTLGR-DI-----SEEQVWQALETVQLAELARSLPDGLYTPLGEQG--NNLSVGQKQ 483 (592)
T ss_pred ---eEEEccCCccccc--hHHHHHHhCC-CC-----CHHHHHHHHHHcCcHHHHHhccccccccccCCC--CCCCHHHHH
Confidence 9999999999986 9999999875 11 234588999999985 4568899999999998 899999999
Q ss_pred hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 262 RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.+ +|+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ 543 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADT 543 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCE
Confidence 9999999999999999999999 9999999999999887432 3445555443 454
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=363.29 Aligned_cols=240 Identities=18% Similarity=0.162 Sum_probs=204.2
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCC-CccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~ 99 (317)
.+.+|.......|..+...+.+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+
T Consensus 413 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~v-----L~~i~l~ 487 (694)
T TIGR03375 413 RALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA-----LDNVSLT 487 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccc-----eeeeeEE
Confidence 55678888899999999999999999999987654221 112469999999999753 334 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||.+||+|+||||||||+|+|+|+|+ |++|+|.+||.+ +++++...+|+.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~----------------------l~~~~~~~lr~~ 540 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVD----------------------IRQIDPADLRRN 540 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE----------------------hhhCCHHHHHhc
Confidence 99999999999999999999999999999 999999999987 778888889888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+||||++.+|+. |++||+.++++.. ..+++.++++.++++ +..+|+|+++.++++| ..|||
T Consensus 541 -------i~~v~Q~~~lf~~--TI~eNi~~~~~~~-----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G--~~LSg 604 (694)
T TIGR03375 541 -------IGYVPQDPRLFYG--TLRDNIALGAPYA-----DDEEILRAAELAGVTEFVRRHPDGLDMQIGERG--RSLSG 604 (694)
T ss_pred -------cEEECCChhhhhh--hHHHHHhCCCCCC-----CHHHHHHHHHHcChHHHHHhCcccccceecCCC--CCCCH
Confidence 9999999998875 9999999875422 234588999999984 5568999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||||+++|||++++|+++||||||| ||+.+++.+.+.+.++.+. ..|+++.+. .+|||
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~i 669 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRI 669 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEE
Confidence 99999999999999999999999999 9999999999999987432 346666553 45653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=353.50 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=200.5
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEecC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPK 102 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~ 102 (317)
+..|.......|..+...+.+..|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+|++
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i-----l~~i~l~i~~ 368 (582)
T PRK11176 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA-----LRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCcc-----ccCceEEeCC
Confidence 4456777788899999999999999999875543211 112369999999999754 334 9999999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
||.+||+|+||||||||+++|+|+++ |++|+|++||++ +.+++...++++
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~----------------------i~~~~~~~~~~~--- 418 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHD----------------------LRDYTLASLRNQ--- 418 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCCceEEECCEE----------------------hhhcCHHHHHhh---
Confidence 99999999999999999999999999 999999999987 777888888887
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
|+|+||++.+|+. |+++|+.++... ..+.+++.++++.++++ ...+|+|+++.++++| .+||||||
T Consensus 419 ----i~~v~Q~~~lf~~--Ti~~Ni~~~~~~----~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g--~~LSGGqr 486 (582)
T PRK11176 419 ----VALVSQNVHLFND--TIANNIAYARTE----QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG--VLLSGGQR 486 (582)
T ss_pred ----ceEEccCceeecc--hHHHHHhcCCCC----CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCC--CcCCHHHH
Confidence 9999999998875 999999986431 12334588899999984 4568899999999999 89999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||++||||++++|+++||||||+ ||+.++..+.+.+.++.+. ..|+++.+.+ +|||
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~-~D~I 548 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEI 548 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEE
Confidence 99999999999999999999999 9999999999999887432 3455655543 6653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=338.36 Aligned_cols=233 Identities=20% Similarity=0.237 Sum_probs=207.6
Q ss_pred cccccccc-----cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccC--------CCCceEEEeEEEEcCCCCcc
Q 021147 21 PVDDFDIP-----LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWI 87 (317)
Q Consensus 21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~I~~~nls~~y~~~~~~ 87 (317)
.|-||.+- .+--|+.=....++++++...-.++++++++.+++..+. ..+-|+++||+|.|..++++
T Consensus 474 tVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v 553 (790)
T KOG0056|consen 474 TVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV 553 (790)
T ss_pred cccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce
Confidence 45566532 234577777788899999999999999999887776442 34679999999999877776
Q ss_pred ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCccccccee
Q 021147 88 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 88 ~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
|+||||+++||+++|||||||+||||++|+|.++++ .++|.|.+||++
T Consensus 554 -----l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-----v~sGsI~iDgqd---------------------- 601 (790)
T KOG0056|consen 554 -----LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-----VNSGSITIDGQD---------------------- 601 (790)
T ss_pred -----eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-----ccCceEEEcCch----------------------
Confidence 999999999999999999999999999999999999 999999999998
Q ss_pred eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEE
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVV 245 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~ 245 (317)
++.....++|++ ||+||||..+|+. |+..||.++++.+++++ +.++|+++++| +..+|+||.+.
T Consensus 602 Irnvt~~SLRs~-------IGVVPQDtvLFNd--TI~yNIryak~~Asnee-----vyaAAkAA~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 602 IRNVTQSSLRSS-------IGVVPQDTVLFND--TILYNIRYAKPSASNEE-----VYAAAKAAQIHDRILQFPEGYNTR 667 (790)
T ss_pred HHHHHHHHHHHh-------cCcccCcceeecc--eeeeheeecCCCCChHH-----HHHHHHHhhHHHHHhcCchhhhhh
Confidence 777888889988 9999999999987 89999999887766655 89999999997 67789999999
Q ss_pred EEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 246 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 246 i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+||+| ..||||||||+|+||++++.|.+++|||+|| ||..+|+.++..+.+++.
T Consensus 668 VGERG--LkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca 722 (790)
T KOG0056|consen 668 VGERG--LKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA 722 (790)
T ss_pred hhhcc--cccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc
Confidence 99999 8999999999999999999999999999999 999999999999999874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=351.32 Aligned_cols=235 Identities=13% Similarity=0.140 Sum_probs=197.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEecCCC
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTT 104 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge 104 (317)
+.......+..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|+++ ..+ |+|+||+|++|+
T Consensus 293 ~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~i~~~i~~G~ 367 (574)
T PRK11160 293 ALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPV-----LKGLSLQIKAGE 367 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCcc-----eecceEEECCCC
Confidence 4455667788888999999999999986654211 112469999999999754 334 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKA 184 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (317)
++||+||||||||||+++|+|+++ |++|+|++||.+ +++++...+|+.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~----------------------i~~~~~~~~r~~----- 415 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWD-----PQQGEILLNGQP----------------------IADYSEAALRQA----- 415 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE----------------------hhhCCHHHHHhh-----
Confidence 999999999999999999999999 999999999987 778888888887
Q ss_pred hhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 185 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 185 ~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
|+|+||++.+|+. |++||+.++.+. ...+++.++++.++++ +.. |+|+++.++++| ..||||||||
T Consensus 416 --i~~v~Q~~~lf~~--ti~~Ni~~~~~~-----~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g--~~LSgGqrqR 483 (574)
T PRK11160 416 --ISVVSQRVHLFSA--TLRDNLLLAAPN-----ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGG--RQLSGGEQRR 483 (574)
T ss_pred --eeEEcccchhhcc--cHHHHhhcCCCc-----cCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCC--CCCCHHHHHH
Confidence 9999999998875 999999987532 2334588999999994 556 899999999999 8999999999
Q ss_pred hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 263 TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
+++|||++++|+++||||||+ ||+.+++.+.+.+.++.+. ..|+++.+.. +|||
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i 543 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRI 543 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEE
Confidence 999999999999999999999 9999999999999987431 3455555543 5653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=348.77 Aligned_cols=239 Identities=14% Similarity=0.174 Sum_probs=199.3
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc----C--CCCceEEEeEEEEcCCCC-ccccccCceeeeeEecC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT----R--IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPK 102 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~ 102 (317)
+..+.......|..+.+++.+.+|+.++++.+++... . ..+.|+++||+|+|++.. .+ |+|+||+|++
T Consensus 273 ~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~i~l~i~~ 347 (529)
T TIGR02857 273 FYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAPA-----LRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCccc-----ccceeEEECC
Confidence 3455666777899999999999999999874432111 1 123699999999997643 34 9999999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
|+.++|+||||||||||+|+|+|+++ |++|+|++||.+ +++++.+.++++
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~----------------------i~~~~~~~lr~~--- 397 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVP----------------------LADADADSWRDQ--- 397 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEe----------------------hhhCCHHHHHhh---
Confidence 99999999999999999999999999 999999999987 777888888887
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
|+|++|++.+|+. |++||+.++.+.. .++++.++++.++++ ...+|+|+++.+++.| .+||||||
T Consensus 398 ----i~~v~Q~~~lf~~--ti~~Ni~~~~~~~-----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g--~~LSgGq~ 464 (529)
T TIGR02857 398 ----IAWVPQHPFLFAG--TIAENIRLARPDA-----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGG--AGLSGGQA 464 (529)
T ss_pred ----eEEEcCCCcccCc--CHHHHHhccCCCC-----CHHHHHHHHHHcCcHHHHHhCcccccchhcccc--ccCCHHHH
Confidence 9999999998875 9999999865322 234588899999984 5568899999999999 89999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i 526 (529)
T TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRI 526 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEE
Confidence 99999999999999999999999 9999999999999987421 355666654 36664
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=311.47 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=157.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.++++++|++.|++. .+ |+||||+|.+||+++||||||||||||+|+|+|+.+ |++|+|.++|++
T Consensus 2 ~~l~i~~v~~~f~~~-~v-----l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~---- 66 (248)
T COG1116 2 ALLEIEGVSKSFGGV-EV-----LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRP---- 66 (248)
T ss_pred ceEEEEeeEEEeCce-EE-----eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcc----
Confidence 468999999999863 33 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+.+..+ .+|||||+..+|+ .+||.+|+.++..... ...+..+++.+++
T Consensus 67 ------------------v~~p~~------------~~~~vFQ~~~LlP-W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L 115 (248)
T COG1116 67 ------------------VTGPGP------------DIGYVFQEDALLP-WLTVLDNVALGLELRGKSKAEARERAKELL 115 (248)
T ss_pred ------------------cCCCCC------------CEEEEeccCcccc-hhhHHhhheehhhccccchHhHHHHHHHHH
Confidence 212111 1888888887665 6899999998765433 3344556788889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+|+. .+.+.|+ .+||||||||++||||++.+|++++||||++ ||+.|+..+++.+.++.+.
T Consensus 116 ~~VgL~--~~~~~~P---------~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tv 184 (248)
T COG1116 116 ELVGLA--GFEDKYP---------HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184 (248)
T ss_pred HHcCCc--chhhcCc---------cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEE
Confidence 999973 2445788 6999999999999999999999999999999 9999999999999998766
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++.-+..+.|||
T Consensus 185 llVTHdi~EAv~LsdRi 201 (248)
T COG1116 185 LLVTHDVDEAVYLADRV 201 (248)
T ss_pred EEEeCCHHHHHhhhCEE
Confidence 345555555555554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=379.27 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=192.5
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------------CCCCceEEEeEEEEcCCC--CccccccCceeeee
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDY 98 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl 98 (317)
........|..+.+++.+..|++++++.+++... ...+.|+|+||+|+|++. ..+ |+|+||
T Consensus 1115 ~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v-----L~~lsl 1189 (1466)
T PTZ00265 1115 YAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-----YKDLTF 1189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc-----ccCeeE
Confidence 3556778889999999999999999976542210 112459999999999743 234 999999
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCC-----------------------------------------------
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----------------------------------------------- 131 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~----------------------------------------------- 131 (317)
+|++|+++|||||||||||||+++|.|+|+|.+
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999410
Q ss_pred --CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHh
Q 021147 132 --FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 209 (317)
Q Consensus 132 --~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~ 209 (317)
.-|++|+|++||.+ +++++...+|++ ||||+|++.+|+. ||+|||.+
T Consensus 1270 ~~~~~~~G~I~idG~d----------------------i~~~~~~~lR~~-------i~~V~Qep~LF~g--TIreNI~~ 1318 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVD----------------------ICDYNLKDLRNL-------FSIVSQEPMLFNM--SIYENIKF 1318 (1466)
T ss_pred cccCCCCCeEEECCEE----------------------HHhCCHHHHHhh-------ccEeCCCCccccc--cHHHHHhc
Confidence 01269999999987 788999999988 9999999999865 99999999
Q ss_pred hhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCH
Q 021147 210 LKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDP 286 (317)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~ 286 (317)
+.+.. .++++.++++.++++ +..+|+||+|.++++| ..|||||||||+|||||+++|++|||||||| ||+
T Consensus 1319 g~~~a-----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G--~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1319 GKEDA-----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYG--KSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred CCCCC-----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 85432 234589999999995 6679999999999999 8999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHH
Q 021147 287 ENELIIVDMLRYCL 300 (317)
Q Consensus 287 ~t~~~l~~~l~~l~ 300 (317)
++++.+++.|.++.
T Consensus 1392 ~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIK 1405 (1466)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=359.52 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=190.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCC--CccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~ 99 (317)
.+..+.......+..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+
T Consensus 429 ~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v-----L~~isl~ 503 (711)
T TIGR00958 429 QLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV-----LKGLTFT 503 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc-----ccCceEE
Confidence 45667778888999999999999999999976554321 123469999999999753 234 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||++|||||||||||||+++|.|+++ |++|+|++||++ +++++...++++
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~----------------------i~~~~~~~lr~~ 556 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQ-----PTGGQVLLDGVP----------------------LVQYDHHYLHRQ 556 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEE----------------------HHhcCHHHHHhh
Confidence 99999999999999999999999999999 999999999987 778888888888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+|++|++.+|+. |++||+.++.+... ++++.++++.++++ +..+|+|+++.++++| ..|||
T Consensus 557 -------i~~v~Q~~~lF~g--TIreNI~~g~~~~~-----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G--~~LSG 620 (711)
T TIGR00958 557 -------VALVGQEPVLFSG--SVRENIAYGLTDTP-----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG--SQLSG 620 (711)
T ss_pred -------ceEEecCcccccc--CHHHHHhcCCCCCC-----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC--CcCCH
Confidence 9999999998875 99999998754222 34588999999985 4567889999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
|||||++||||++++|+++||||||| ||+++++.+.+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 99999999999999999999999999 99999999988
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=336.30 Aligned_cols=182 Identities=20% Similarity=0.274 Sum_probs=169.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.|+|+||+|.|++++++ |+++||+|++||.+||||+|||||||++|+|.++++ ++|+|++||++
T Consensus 349 ~~~I~F~dV~f~y~~k~~i-----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~d--- 414 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKV-----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQD--- 414 (591)
T ss_pred CCcEEEEeeEEEeCCCCce-----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCee---
Confidence 4569999999999887766 999999999999999999999999999999999997 58999999998
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+.+.+|+. ||||||+..+|+. ||..||.++++...+.+ +.++|
T Consensus 415 -------------------ik~~~~~SlR~~-------Ig~VPQd~~LFnd--TIl~NI~YGn~sas~ee-----V~e~~ 461 (591)
T KOG0057|consen 415 -------------------IKEVSLESLRQS-------IGVVPQDSVLFND--TILYNIKYGNPSASDEE-----VVEAC 461 (591)
T ss_pred -------------------HhhhChHHhhhh-------eeEeCCcccccch--hHHHHhhcCCCCcCHHH-----HHHHH
Confidence 778999999998 9999999999986 99999999987666544 99999
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+.+++| +..+|+||.|.+|++| ..||||||||+++|||++++|++++|||||| ||.+||..+.+++...
T Consensus 462 k~a~~hd~i~~l~~GY~T~VGerG--~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~ 533 (591)
T KOG0057|consen 462 KRAGLHDVISRLPDGYQTLVGERG--LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV 533 (591)
T ss_pred HHcCcHHHHHhccccchhhHhhcc--cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh
Confidence 999997 5678999999999999 9999999999999999999999999999999 9999999999999884
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=314.41 Aligned_cols=195 Identities=18% Similarity=0.273 Sum_probs=167.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++++||++.|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |.+|+|+++|++
T Consensus 2 ~L~~~~ls~~y~~~-~i-----l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~----- 65 (258)
T COG1120 2 MLEVENLSFGYGGK-PI-----LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKD----- 65 (258)
T ss_pred eeEEEEEEEEECCe-eE-----EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCc-----
Confidence 68999999999855 34 999999999999999999999999999999999999 999999999998
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c----CCCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M----EGDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~----~~~~~~~~~~~~ 225 (317)
+..++.+++.++ ++|+||.+. .++.+||+|-+.++.. + ....+.+.+.+.
T Consensus 66 -----------------i~~~~~kelAk~-------ia~vpQ~~~-~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~ 120 (258)
T COG1120 66 -----------------IASLSPKELAKK-------LAYVPQSPS-APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120 (258)
T ss_pred -----------------hhhcCHHHHhhh-------EEEeccCCC-CCCCcEEeehHhhcCCcccccccCCCHhHHHHHH
Confidence 777888888777 999999874 5557899999988752 1 112345566788
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... ...+ .+||||||||+.|||||+.+|++++|||||+ ||..++..++++++++.+.
T Consensus 121 ~aL~~~~~~~la---~r~~--------~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~ 189 (258)
T COG1120 121 EALELLGLEHLA---DRPV--------DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189 (258)
T ss_pred HHHHHhCcHHHh---cCcc--------cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 899999985333 3445 7999999999999999999999999999999 9999999999999999744
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
.-|++.++..++|++
T Consensus 190 ~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 190 LTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 457788888888874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.10 Aligned_cols=240 Identities=16% Similarity=0.147 Sum_probs=200.4
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... .....|+++||+|+|++. ..+ |+|+||+|+
T Consensus 282 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~inl~i~ 356 (571)
T TIGR02203 282 ALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPA-----LDSISLVIE 356 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCcc-----ccCeeEEec
Confidence 45567778888999999999999999999876544221 112459999999999653 334 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||.++|+|+||||||||+++|+|+++ |++|+|+++|.+ +..++...++++
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-----~~~G~I~i~g~~----------------------i~~~~~~~~~~~-- 407 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE-----PDSGQILLDGHD----------------------LADYTLASLRRQ-- 407 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEe----------------------HHhcCHHHHHhh--
Confidence 999999999999999999999999999 999999999987 677888888887
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|+|+||++.+|++ |++||+.+++.. +..++++.++++.++++ ...+|+|+++.++++| ..|||||
T Consensus 408 -----i~~v~Q~~~lf~~--Ti~~Ni~~~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g--~~LSgGq 474 (571)
T TIGR02203 408 -----VALVSQDVVLFND--TIANNIAYGRTE----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG--VLLSGGQ 474 (571)
T ss_pred -----ceEEccCcccccc--cHHHHHhcCCCC----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCC--CcCCHHH
Confidence 9999999998876 999999876421 12245688999999984 4567889999999999 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.|+++.+. ..|+.+.+ +.+|+
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ 536 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADR 536 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCE
Confidence 999999999999999999999999 9999999999999887431 34555443 33554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=348.01 Aligned_cols=241 Identities=20% Similarity=0.225 Sum_probs=199.0
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 28 PLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
..+.++.......|..+..++.+..++.++++.+++... ...+.|+++||+|+|++...+ |+|+||+
T Consensus 283 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~inl~ 357 (588)
T PRK13657 283 TLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-----VEDVSFE 357 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCce-----ecceeEE
Confidence 456677778888899999999999999998876433211 012359999999999754444 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
+++|++++|+|+||||||||+|+|+|+++ |++|+|++||.+ +++++...++++
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~----------------------i~~~~~~~~r~~ 410 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTD----------------------IRTVTRASLRRN 410 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEE----------------------hhhCCHHHHHhh
Confidence 99999999999999999999999999999 999999999987 778888888888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+|+||++.+|++ |++||+.++++... ++++.++++.+++. ...+|+|+++.+++.| ..|||
T Consensus 411 -------i~~v~Q~~~lf~~--Ti~~Ni~~~~~~~~-----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g--~~LSg 474 (588)
T PRK13657 411 -------IAVVFQDAGLFNR--SIEDNIRVGRPDAT-----DEEMRAAAERAQAHDFIERKPDGYDTVVGERG--RQLSG 474 (588)
T ss_pred -------eEEEecCcccccc--cHHHHHhcCCCCCC-----HHHHHHHHHHhCHHHHHHhCcccccchhcCCC--CCCCH
Confidence 9999999999976 99999998643222 33477888888884 4457889999999998 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||+||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+.+.+. .+|||
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~i 539 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRI 539 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEE
Confidence 99999999999999999999999999 9999999999999886431 334444443 35553
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=302.06 Aligned_cols=200 Identities=17% Similarity=0.235 Sum_probs=163.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++++.+ |+||||+|++||++||||+||||||||+|+|+|+.+ |++|+|.++|.+
T Consensus 2 ~~i~~~nl~k~yp~~~~a-----L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~---- 67 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQA-----LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQ---- 67 (258)
T ss_pred ceEEEeeeeeecCCCcee-----eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccc----
Confidence 479999999999766665 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc---------cCCCChHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS---------MEGDSDVE 220 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~---------~~~~~~~~ 220 (317)
+.....+++++. ..+|||+||.+.+.+ .++|.+|+..+.. +......+
T Consensus 68 ------------------i~~~~~k~lr~~----r~~iGmIfQ~~nLv~-r~sv~~NVl~grl~~~s~~~slfglfsk~d 124 (258)
T COG3638 68 ------------------ITKLKGKELRKL----RRDIGMIFQQFNLVP-RLSVLENVLLGRLGYTSTWRSLFGLFSKED 124 (258)
T ss_pred ------------------hhccchHHHHHH----HHhceeEeccCCccc-ccHHHHHHHhhhcccchHHHHHhCCCCHHH
Confidence 333443333322 233999999998776 5899999976532 12234567
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..+..++++.+|+-...+ ..+ .+|||||+||++|||||+.+|++++.|||++ |||.+.+.+++.|+++
T Consensus 125 k~~Al~aLervgi~~~A~---qra--------~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 125 KAQALDALERVGILDKAY---QRA--------STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred HHHHHHHHHHcCcHHHHH---HHh--------ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 778889999999832221 122 6899999999999999999999999999999 9999999999999998
Q ss_pred HHh-------cCCCcchhhcccCCC
Q 021147 300 LEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+. .-|.+..+.++||||
T Consensus 194 n~~~g~Tvi~nLH~vdlA~~Y~~Ri 218 (258)
T COG3638 194 NQEDGITVIVNLHQVDLAKKYADRI 218 (258)
T ss_pred HHHcCCEEEEEechHHHHHHHHhhh
Confidence 765 346677788888875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=300.37 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=151.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++++||++.|..+... +.+|++|||+|++||+++|+||||||||||+++|.|+.. |++|.|.++|++
T Consensus 1 ~i~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d----- 68 (226)
T COG1136 1 MIELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKD----- 68 (226)
T ss_pred CcEEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEE-----
Confidence 47899999999654221 233999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh-HHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-VEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~-~~~~~~~~ 226 (317)
+..++. ..+|+ +.||||||+..+++ .+|+.||+.+...+..... ...++...
T Consensus 69 -----------------~~~l~~~~~~~~R~------~~iGfvFQ~~nLl~-~ltv~ENv~lpl~~~~~~~~~~~~~~~~ 124 (226)
T COG1136 69 -----------------LTKLSEKELAKLRR------KKIGFVFQNFNLLP-DLTVLENVELPLLIAGKSAGRRKRAAEE 124 (226)
T ss_pred -----------------cCcCCHHHHHHHHH------HhEEEECccCCCCC-CCCHHHHHHhHHHHcCCChhHHHHHHHH
Confidence 444443 23333 35999999998776 5999999997654444333 34566778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.+++... +.+.++ .+|||||+||+||||||+.+|++++.||||. ||.++.+.++++++++.+.
T Consensus 125 l~~~lgl~~~-~~~~~p---------~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 125 LLEVLGLEDR-LLKKKP---------SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred HHHhcCChhh-hccCCc---------hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 8999897421 112344 6999999999999999999999999999999 9999999999999998765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=293.23 Aligned_cols=196 Identities=19% Similarity=0.207 Sum_probs=163.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+|+||+++|+++..+ |+||||+|++||++-|+||||||||||+|+|++... |++|+|+++|.+..
T Consensus 1 mI~f~~V~k~Y~~g~~a-----L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~--- 67 (223)
T COG2884 1 MIRFENVSKAYPGGREA-----LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLS--- 67 (223)
T ss_pred CeeehhhhhhcCCCchh-----hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecc---
Confidence 69999999999888544 999999999999999999999999999999999999 99999999998721
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
.++..+...+|++ ||+||||..++. ..||+||++|...-.. ......+++.++++
T Consensus 68 ----------------~l~~~~iP~LRR~-------IGvVFQD~rLL~-~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~ 123 (223)
T COG2884 68 ----------------RLKGREIPFLRRQ-------IGVVFQDFRLLP-DRTVYENVALPLRVIGKPPREIRRRVSEVLD 123 (223)
T ss_pred ----------------cccccccchhhhe-------eeeEeeeccccc-cchHhhhhhhhhhccCCCHHHHHHHHHHHHH
Confidence 1334444567776 999999998776 6899999998764433 33566788889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+|+-. ..+..+ .+|||||+||++||||++.+|++||.||||. |||.+...+++++.++...
T Consensus 124 ~VgL~~--k~~~lP---------~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ 192 (223)
T COG2884 124 LVGLKH--KARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLM 192 (223)
T ss_pred Hhccch--hhhcCc---------cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEE
Confidence 999821 122455 5999999999999999999999999999999 9999999999999998543
Q ss_pred cCCCcchhhccc
Q 021147 303 ADRNLSCKSCAR 314 (317)
Q Consensus 303 ~~~~~~~~~~~~ 314 (317)
|.|+.+.+..+.
T Consensus 193 ATHd~~lv~~~~ 204 (223)
T COG2884 193 ATHDLELVNRMR 204 (223)
T ss_pred EeccHHHHHhcc
Confidence 666666655544
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=349.05 Aligned_cols=240 Identities=18% Similarity=0.206 Sum_probs=201.8
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I 100 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. +.+ |+|+||+|
T Consensus 406 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i-----l~~i~l~i 480 (694)
T TIGR01846 406 RVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEV-----LSNLNLDI 480 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEE
Confidence 45567788888999999999999999999976544321 112469999999999644 334 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.+||+|+||||||||+|+|+|+++ |++|+|++||.+ +++++...+|+.
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~----------------------i~~~~~~~~r~~- 532 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVD----------------------LAIADPAWLRRQ- 532 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEe----------------------hhhCCHHHHHHh-
Confidence 9999999999999999999999999999 999999999987 778888888887
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|+||+|++.+|+. |++||+.++.+.. ..+++.++++.++++ +..+|+|+++.++++| ..||||
T Consensus 533 ------i~~v~q~~~lf~~--ti~eNi~~~~~~~-----~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g--~~LSgG 597 (694)
T TIGR01846 533 ------MGVVLQENVLFSR--SIRDNIALCNPGA-----PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG--ANLSGG 597 (694)
T ss_pred ------CeEEccCCeehhh--hHHHHHhcCCCCC-----CHHHHHHHHHHcChHHHHHhCcCccCcEecCCC--CCCCHH
Confidence 9999999998875 9999998765322 234588889999984 4568899999999998 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.. +|||
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 661 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRI 661 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEE
Confidence 9999999999999999999999999 9999999999999987421 3455555543 5653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=301.81 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=163.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|+++.|+.+..+ ..+|++|||+|.+||++||||+||||||||+|+|+|+.+ |++|+|.++|++
T Consensus 2 ~~l~v~nl~~~y~~~~~~--~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~---- 70 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFA--FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKP---- 70 (252)
T ss_pred ceEEEeceEEEecCCcch--hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcc----
Confidence 579999999999876521 123999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
..... .+... +.|.+|||+|. -+++..||.+-+.-... ....+..++++.++
T Consensus 71 ------------------~~~~~~~~~~~-------~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-~~~~~~~~~~i~~~ 124 (252)
T COG1124 71 ------------------LAPKKRAKAFY-------RPVQMVFQDPYSSLNPRRTVGRILSEPLR-PHGLSKSQQRIAEL 124 (252)
T ss_pred ------------------cCccccchhhc-------cceeEEecCCccccCcchhHHHHHhhhhc-cCCccHHHHHHHHH
Confidence 21111 11222 23899999886 57777788777653221 12334556668999
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.++++..- .+.++ .+|||||+||+||||||..+|+++|+||||| ||...+..+.+++.++.+.
T Consensus 125 L~~VgL~~~~-l~R~P---------~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt 194 (252)
T COG1124 125 LDQVGLPPSF-LDRRP---------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLT 194 (252)
T ss_pred HHHcCCCHHH-HhcCc---------hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCce
Confidence 9999996332 23566 5899999999999999999999999999999 9999999999999999876
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
-+|++..+..+||||
T Consensus 195 ~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 195 YLFISHDLALVEHMCDRI 212 (252)
T ss_pred EEEEeCcHHHHHHHhhhe
Confidence 478899999999986
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=296.25 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=164.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.++++||++.|++.+. |+|||++|++++++||+||||||||||+|+++++.+.-++.-.+|+|.++|++..
T Consensus 5 ~~~~~~~~l~~yYg~~~a------L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~- 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHA------LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY- 77 (253)
T ss_pred cceeEecceeEEECchhh------hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc-
Confidence 356999999999986643 9999999999999999999999999999999999985444455799999998721
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
-...+...+|++ ||+|||.|.-|+ +||+||++++....... ..-.+.++..
T Consensus 78 -------------------~~~~d~~~lRr~-------vGMVFQkPnPFp--~SIydNVayG~r~~g~~~~~ldeiVe~s 129 (253)
T COG1117 78 -------------------DPKVDVVELRRR-------VGMVFQKPNPFP--MSIYDNVAYGLRLHGIKDKELDEIVESS 129 (253)
T ss_pred -------------------CCCCCHHHHHHH-------heeeccCCCCCC--chHHHHHHHhHHhhccchHHHHHHHHHH
Confidence 124577788888 999999998776 79999999986543322 3445667778
Q ss_pred HHHcCCCcc---cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 228 ATTFNCPYL---SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 228 a~~~~l~~~---~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++.++++.. .+. ... ..|||||+||++|||||+.+|+++++||||| |||.+...|-++|.++.+.
T Consensus 130 Lk~AaLWdEVKDrL~-~sa---------~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~y 199 (253)
T COG1117 130 LKKAALWDEVKDRLH-KSA---------LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKY 199 (253)
T ss_pred HHHhHhHHHhHHHhh-CCc---------cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhcc
Confidence 888888421 121 122 6899999999999999999999999999999 9999999999999998754
Q ss_pred ----cCCCcchhhcccCC
Q 021147 303 ----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~ 316 (317)
..||..+++.+.|+
T Consensus 200 TIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 200 TIVIVTHNMQQAARVSDY 217 (253)
T ss_pred EEEEEeCCHHHHHHHhHh
Confidence 46677776666654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=328.92 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=188.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccccccccC-------CCCc--eEEEeEEEEcCCCCccccccCceeeeeEecCCCE
Q 021147 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSL--TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (317)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~ 105 (317)
-.....|..-.....+.+.+..+++.+...... ..+. ++++|+++.|++++.+ ++|+||++++|+.
T Consensus 275 R~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~-----l~~l~~t~~~g~~ 349 (559)
T COG4988 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA-----LSDLNLTIKAGQL 349 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcc-----cCCceeEecCCcE
Confidence 344557777777888888999898877553321 1223 4455999999887654 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhh
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAH 185 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (317)
+||||+||||||||+++|+|+.+ |++|+|.+||.+ .++.+...|+++
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~----------------------l~~l~~~~~~k~------ 396 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLA-----PTQGEIRVNGID----------------------LRDLSPEAWRKQ------ 396 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCcc----------------------ccccCHHHHHhH------
Confidence 99999999999999999999999 999999999998 778899999998
Q ss_pred hccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhc
Q 021147 186 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTY 264 (317)
Q Consensus 186 ~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ 264 (317)
+++|+|+|++|.. |++||+.++++...+ +++.++++.+++. ....|+|.+++++++| ..|||||+||++
T Consensus 397 -i~~v~Q~p~lf~g--TireNi~l~~~~~s~-----e~i~~al~~a~l~~~v~~p~GLdt~ige~G--~~LSgGQ~QRla 466 (559)
T COG4988 397 -ISWVSQNPYLFAG--TIRENILLARPDASD-----EEIIAALDQAGLLEFVPKPDGLDTVIGEGG--AGLSGGQAQRLA 466 (559)
T ss_pred -eeeeCCCCccccc--cHHHHhhccCCcCCH-----HHHHHHHHHhcHHHhhcCCCcccchhccCC--CCCCHHHHHHHH
Confidence 9999999999976 999999988754333 3488899999883 2223789999999999 899999999999
Q ss_pred ccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 265 LGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 265 iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+|||+.++++++||||||+ ||.+||+.+.+.|.++.+.
T Consensus 467 LARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 467 LARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505 (559)
T ss_pred HHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC
Confidence 9999999999999999999 9999999999999998754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=317.40 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=155.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||++.|++.. + |++|||+|++||+++|+||||||||||||+|+||.+ |++|+|+++|++
T Consensus 1 M~~i~l~~v~K~yg~~~-~-----l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~--- 66 (338)
T COG3839 1 MAELELKNVRKSFGSFE-V-----LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRD--- 66 (338)
T ss_pred CcEEEEeeeEEEcCCce-e-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE---
Confidence 46799999999997654 4 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
++++++++ +. |++|||+..+++ +|||++|++|+..... ..++..+++.++
T Consensus 67 -------------------vt~l~P~~--R~-------iamVFQ~yALyP-hmtV~~Niaf~Lk~~~~~k~ei~~rV~ev 117 (338)
T COG3839 67 -------------------VTDLPPEK--RG-------IAMVFQNYALYP-HMTVYENIAFGLKLRGVPKAEIDKRVKEV 117 (338)
T ss_pred -------------------CCCCChhH--CC-------EEEEeCCccccC-CCcHHHHhhhhhhhCCCchHHHHHHHHHH
Confidence 56666653 22 999999987665 7999999999876544 345667889999
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++.+++... -+.++ .+|||||+||+|+||||+++|++++||||.| ||+..+..+...|+++.+.
T Consensus 118 a~~L~l~~l--L~r~P---------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 118 AKLLGLEHL--LNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred HHHcCChhH--HhcCc---------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence 999998422 22455 6999999999999999999999999999999 9999999999999997654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=305.16 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=161.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||++.|++. .+ |+||||+|++|++++||||||||||||+|+|+|+++ |.+|+|.+.|++
T Consensus 2 ~~~i~v~nl~v~y~~~-~v-----l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~--- 67 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PV-----LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKP--- 67 (254)
T ss_pred CcEEEEeeeEEEECCE-ee-----eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEcccc---
Confidence 4579999999999865 45 999999999999999999999999999999999999 999999999975
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccC-----CCChHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSME-----GDSDVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~-----~~~~~~~~ 222 (317)
..+... +.+ ||||||... -..+++||+|-+.++.... ...+.+.+
T Consensus 68 -------------------~~~~~~---~~~-------IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~ 118 (254)
T COG1121 68 -------------------VRKRRK---RLR-------IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118 (254)
T ss_pred -------------------cccccc---CCe-------EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHH
Confidence 211111 122 999999542 3556789999998764221 22345577
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+.++++.+++.... +..+ .+|||||+||+.|||||+.+|++++||||++ +|+.++..+.++|.++.+
T Consensus 119 ~v~~aL~~Vgm~~~~---~r~i--------~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 119 KVDEALERVGMEDLR---DRQI--------GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred HHHHHHHHcCchhhh---CCcc--------cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 889999999985433 4566 7999999999999999999999999999999 999999999999999976
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|+++.+...+|+|
T Consensus 188 eg~tIl~vtHDL~~v~~~~D~v 209 (254)
T COG1121 188 EGKTVLMVTHDLGLVMAYFDRV 209 (254)
T ss_pred CCCEEEEEeCCcHHhHhhCCEE
Confidence 4 567888888888875
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=339.34 Aligned_cols=224 Identities=15% Similarity=0.238 Sum_probs=192.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCC--CccccccCceeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSD 97 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~is 97 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. +.+ |+|+|
T Consensus 286 ~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i-----L~~in 360 (576)
T TIGR02204 286 MVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA-----LDGLN 360 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc-----cccee
Confidence 45667888888999999999999999999876543111 112359999999999753 234 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||.++|+|+||||||||+|+|+|+++ |++|+|++||.+ ++.++...++
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~----------------------i~~~~~~~~~ 413 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVD----------------------LRQLDPAELR 413 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEE----------------------HHhcCHHHHH
Confidence 9999999999999999999999999999999 999999999987 6778888888
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
+. ++|+||++.+|+. |++||+.++.+.. ..+++.++++.+++. ...+|+|.++.+++.| ..|
T Consensus 414 ~~-------i~~~~Q~~~lf~~--Ti~~Ni~~~~~~~-----~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g--~~L 477 (576)
T TIGR02204 414 AR-------MALVPQDPVLFAA--SVMENIRYGRPDA-----TDEEVEAAARAAHAHEFISALPEGYDTYLGERG--VTL 477 (576)
T ss_pred Hh-------ceEEccCCccccc--cHHHHHhcCCCCC-----CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC--CcC
Confidence 87 9999999998876 9999998865322 134588899999884 4457889999999988 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||||||+++|||++++|+++||||||+ ||+.+++.+.+.++++.
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM 523 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999999998874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=336.88 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=190.2
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..|.......|..+..++.+.+|+.++++.+++... ...+.|+++|++|+|+.. ..+ |+|+||+|+
T Consensus 265 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~-----l~~i~~~i~ 339 (569)
T PRK10789 265 LMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPA-----LENVNFTLK 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCcc-----ccCeeEEEC
Confidence 34456667778889999999999999999876543211 112359999999999753 334 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+|++++|+||||||||||+++|+|+++ |++|+|+++|++ +.+++...+++.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~~~~-- 390 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFD-----VSEGDIRFHDIP----------------------LTKLQLDSWRSR-- 390 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEE----------------------HhhCCHHHHHhh--
Confidence 999999999999999999999999999 999999999987 667787788877
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
++|++|++.+|+. |++||+.++.+.. ..+++.++++.++++ ...+|+|+.+.++++| ..|||||
T Consensus 391 -----i~~v~q~~~lf~~--ti~~Ni~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g--~~LSgGq 456 (569)
T PRK10789 391 -----LAVVSQTPFLFSD--TVANNIALGRPDA-----TQQEIEHVARLASVHDDILRLPQGYDTEVGERG--VMLSGGQ 456 (569)
T ss_pred -----eEEEccCCeeccc--cHHHHHhcCCCCC-----CHHHHHHHHHHcCCHHHHHhCcCcccceecCCC--CcCCHHH
Confidence 9999999998875 9999998764321 234577788888884 4457889999999998 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||+++|||++++|+++||||||+ ||+.+++.+.+.|+++.
T Consensus 457 ~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 99999999999998864
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=334.76 Aligned_cols=240 Identities=19% Similarity=0.236 Sum_probs=196.6
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCC-CccccccCceeeeeEecC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPK 102 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~ 102 (317)
.+..|.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|+++ ..+ |+|+||+|++
T Consensus 269 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~~~~~i~~ 343 (544)
T TIGR01842 269 RALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPT-----LRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEEcC
Confidence 45567888888999999999999999999976543221 122469999999999754 334 9999999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
|+.++|+||||||||||+++|+|+++ |++|+|.++|.+ +..++...+++.
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~----------------------i~~~~~~~~~~~--- 393 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGAD----------------------LKQWDRETFGKH--- 393 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe----------------------hhhCCHHHHhhh---
Confidence 99999999999999999999999999 999999999987 666777777777
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
++|+||++.+|+. |++||+.+.... ...+++.++++.++++ ...+|+|+.+.++++| ..||||||
T Consensus 394 ----i~~v~q~~~lf~~--ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g--~~LSgGq~ 460 (544)
T TIGR01842 394 ----IGYLPQDVELFPG--TVAENIARFGEN-----ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGG--ATLSGGQR 460 (544)
T ss_pred ----eEEecCCcccccc--cHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCccccccccCCCc--CCCCHHHH
Confidence 9999999998875 999999864421 1233477778888773 4457889999999998 89999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
||+++|||++++|+++||||||+ ||+.+++.+.+.++++... ..|+++.. +.+|+|
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i 523 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKI 523 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEE
Confidence 99999999999999999999999 9999999999999887421 34555543 235653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=336.60 Aligned_cols=240 Identities=15% Similarity=0.165 Sum_probs=196.8
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
.+.++.......|..+..++.+.+|+.++++.+++... ...+.|+++||+|+|++...+ |+|+||+|
T Consensus 284 ~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~i~~~i 358 (585)
T TIGR01192 284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQG-----VFDVSFEA 358 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceeEEE
Confidence 45567777888899999999999999998875433211 112369999999999764444 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|++++|+||||||||||+++|+|+++ |++|+|+++|.+ +.+++...+++.
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~----------------------~~~~~~~~~~~~- 410 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGID----------------------INTVTRESLRKS- 410 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEE----------------------hhhCCHHHHHhh-
Confidence 9999999999999999999999999999 999999999987 667777778777
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
++|++|++.+|+. |++||+.++.+.. ..+++.++++.++++ ...+++|+.+.++++| ..||||
T Consensus 411 ------i~~v~q~~~lf~~--ti~~Ni~~~~~~~-----~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~--~~LSgG 475 (585)
T TIGR01192 411 ------IATVFQDAGLFNR--SIRENIRLGREGA-----TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG--NRLSGG 475 (585)
T ss_pred ------eEEEccCCccCcc--cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHhccccccchhcCCC--CCCCHH
Confidence 9999999988864 9999998764322 233467778888774 3457889999999998 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||+++|||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+.+ +|+|
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i 539 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLV 539 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEE
Confidence 9999999999999999999999999 9999999999999887432 3455555543 5653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=366.62 Aligned_cols=235 Identities=13% Similarity=0.071 Sum_probs=196.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEe
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDV 100 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I 100 (317)
+.......|..+.....+.+|+.++++.+++... +..+.|+++||+|+|+++ ..+ |+|+||+|
T Consensus 1185 ~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v-----L~~isl~I 1259 (1495)
T PLN03232 1185 LLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV-----LHGLSFFV 1259 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc-----cccceEEE
Confidence 4445566677788889999999999876544221 113469999999999644 344 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||.+||||+||||||||+++|.|+++ |++|+|++||.+ +++++...+|++
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~d----------------------i~~i~~~~lR~~- 1311 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCD----------------------VAKFGLTDLRRV- 1311 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCceEEECCEE----------------------hhhCCHHHHHhh-
Confidence 9999999999999999999999999999 999999999987 778898999988
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|++|||+|.+|++ ||++|+.++.. ...+++.++++.++++ +..+|+|+++.++++| .+||||
T Consensus 1312 ------i~iVpQdp~LF~g--TIr~NL~~~~~------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G--~~LSgG 1375 (1495)
T PLN03232 1312 ------LSIIPQSPVLFSG--TVRFNIDPFSE------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG--ENFSVG 1375 (1495)
T ss_pred ------cEEECCCCeeeCc--cHHHHcCCCCC------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC--CCCCHH
Confidence 9999999999976 99999976431 2234588999999984 5567889999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||++||||++++|+++||||||| ||++|++.+++.|++..+. -.|+++.+.+ +|||
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrI 1439 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKI 1439 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEE
Confidence 9999999999999999999999999 9999999999999987432 3455555544 4553
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=323.74 Aligned_cols=216 Identities=17% Similarity=0.193 Sum_probs=188.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCC
Q 021147 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (317)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~S 112 (317)
.......+...+..|+.++++++++...+ ....++++||||+|++.+..+ |+|+||++++||.+||+|+|
T Consensus 298 ~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~----L~~~~l~l~~GEkvAIlG~S 373 (573)
T COG4987 298 GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKA----LKNFNLTLAQGEKVAILGRS 373 (573)
T ss_pred hhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccch----hhccceeecCCCeEEEECCC
Confidence 34466667788888999998887665443 111699999999998776322 99999999999999999999
Q ss_pred CChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccc
Q 021147 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 192 (317)
Q Consensus 113 GsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q 192 (317)
|||||||+.+|.|.|+ |++|+|.++|.+ +..++.+.+++. +++++|
T Consensus 374 GsGKSTllqLl~~~~~-----~~~G~i~~~g~~----------------------~~~l~~~~~~e~-------i~vl~Q 419 (573)
T COG4987 374 GSGKSTLLQLLAGAWD-----PQQGSITLNGVE----------------------IASLDEQALRET-------ISVLTQ 419 (573)
T ss_pred CCCHHHHHHHHHhccC-----CCCCeeeECCcC----------------------hhhCChhhHHHH-------Hhhhcc
Confidence 9999999999999999 999999999987 677888888887 999999
Q ss_pred ccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceec
Q 021147 193 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 193 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~ 270 (317)
.+++|.. |+++|+.+.++..+++ ++.++++.++++ ....|+|+.+.+++.| ..|||||+||++|||++.
T Consensus 420 r~hlF~~--Tlr~NL~lA~~~AsDE-----el~~aL~qvgL~~l~~~~p~gl~t~lge~G--~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 420 RVHLFSG--TLRDNLRLANPDASDE-----ELWAALQQVGLEKLLESAPDGLNTWLGEGG--RRLSGGERRRLALARALL 490 (573)
T ss_pred chHHHHH--HHHHHHhhcCCCCCHH-----HHHHHHHHcCHHHHHHhChhhhhchhccCC--CcCCchHHHHHHHHHHHH
Confidence 9999976 9999999887765544 389999999995 4456789999999999 899999999999999999
Q ss_pred cccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 271 IPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 271 ~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.+++||||||. ||+.|++.+++.+.+..+
T Consensus 491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred cCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 9999999999999 999999999999988654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=315.23 Aligned_cols=181 Identities=18% Similarity=0.146 Sum_probs=154.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++.|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+.. |++|+|.++|++
T Consensus 3 ~~~l~i~~v~k~yg~~-~a-----v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~--- 68 (352)
T COG3842 3 KPALEIRNVSKSFGDF-TA-----VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGED--- 68 (352)
T ss_pred CceEEEEeeeeecCCe-eE-----EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE---
Confidence 4579999999999843 33 999999999999999999999999999999999999 999999999997
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~~ 226 (317)
+..+++. ++. ||+|||+..||+ ++||++|++|+..... .. ....+++.+
T Consensus 69 -------------------i~~lpp~--kR~-------ig~VFQ~YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e 119 (352)
T COG3842 69 -------------------ITDVPPE--KRP-------IGMVFQSYALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEE 119 (352)
T ss_pred -------------------CCCCChh--hcc-------cceeecCcccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHH
Confidence 5566654 233 999999998776 7999999999876333 22 345678889
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhc
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHA 303 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~ 303 (317)
+++.+++.. +.+.++ .+|||||+||+|+||||+.+|++++||||.| ||.+-+..++..++++.+..
T Consensus 120 ~L~lV~L~~--~~~R~p---------~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~ 186 (352)
T COG3842 120 ALELVGLEG--FADRKP---------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL 186 (352)
T ss_pred HHHHcCchh--hhhhCh---------hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc
Confidence 999999843 233455 6999999999999999999999999999999 99999999999999987654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=365.95 Aligned_cols=235 Identities=13% Similarity=0.077 Sum_probs=195.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEe
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDV 100 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I 100 (317)
........|..+.....+.+|+.++++.+++... +..+.|+|+||+|+|++. ..+ |+||||+|
T Consensus 1188 ~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~V-----L~~is~~I 1262 (1622)
T PLN03130 1188 LLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPV-----LHGLSFEI 1262 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCce-----ecceeEEE
Confidence 3444445566667788899999998876544211 123469999999999654 234 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||.+||||+||||||||+++|.|+++ |++|+|++||.+ +++++...+|++
T Consensus 1263 ~~GekVaIVGrSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~d----------------------I~~i~l~~LR~~- 1314 (1622)
T PLN03130 1263 SPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCD----------------------ISKFGLMDLRKV- 1314 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCEe----------------------cccCCHHHHHhc-
Confidence 9999999999999999999999999999 999999999998 778999999988
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|++|||+|.+|++ ||++|+.++.. ..++++.++++.++++ +..+|+|+++.++++| .+||||
T Consensus 1315 ------IsiVpQdp~LF~G--TIreNLd~~~~------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G--~nLSgG 1378 (1622)
T PLN03130 1315 ------LGIIPQAPVLFSG--TVRFNLDPFNE------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG--ENFSVG 1378 (1622)
T ss_pred ------cEEECCCCccccc--cHHHHhCcCCC------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCC--CCCCHH
Confidence 9999999999976 99999976532 1345689999999994 5568899999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||++|||||+++|+++||||||| ||++|++.+++.|++..+. -.|+++.+.+ +|||
T Consensus 1379 QrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrI 1442 (1622)
T PLN03130 1379 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI 1442 (1622)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEE
Confidence 9999999999999999999999999 9999999999999987432 3455655554 4553
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=296.40 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=167.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|++|+|+++..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.+
T Consensus 2 ~~i~~~~l~~~y~~~~~~-----l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~---- 67 (235)
T COG1122 2 RMIEAENLSFRYPGRKAA-----LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLD---- 67 (235)
T ss_pred ceEEEEEEEEEcCCCcee-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCee----
Confidence 579999999999776343 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec-cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~ 227 (317)
+. ..+...++++ +|||+|+|..+...-||.+.++|+.... ...++..+++.++
T Consensus 68 ------------------~~~~~~~~~~~~~-------vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~ 122 (235)
T COG1122 68 ------------------TSSEKSLLELRQK-------VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122 (235)
T ss_pred ------------------ccchhhHHHhhcc-------eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHH
Confidence 22 2445556665 9999999976666679999999986443 3334567788899
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... ..+. ..||||||||++||.+|+.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 123 l~~vgl~~~~---~r~p--------~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~t 191 (235)
T COG1122 123 LELVGLEELL---DRPP--------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT 191 (235)
T ss_pred HHHcCchhhc---cCCc--------cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCe
Confidence 9999984332 3344 7999999999999999999999999999999 9999999999999998755
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+++|||
T Consensus 192 ii~~tHd~~~~~~~ad~v 209 (235)
T COG1122 192 IIIVTHDLELVLEYADRV 209 (235)
T ss_pred EEEEeCcHHHHHhhCCEE
Confidence 578888888888875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=290.97 Aligned_cols=201 Identities=18% Similarity=0.238 Sum_probs=160.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.|++++|+++|+++. + ++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|.+
T Consensus 6 ~~~I~vr~v~~~fG~~~-I-----ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~--- 71 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV-I-----LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGED--- 71 (263)
T ss_pred cceEEEeeeeeecCCEE-E-----ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcc---
Confidence 56899999999997664 4 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC--hHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS--DVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~--~~~~~~~~~ 226 (317)
+.+.+..++. ++.+++|++||...||. .+||+||++|........ +..++.+..
T Consensus 72 -------------------i~~ls~~~~~----~ir~r~GvlFQ~gALFs-sltV~eNVafplre~~~lp~~~i~~lv~~ 127 (263)
T COG1127 72 -------------------IPQLSEEELY----EIRKRMGVLFQQGALFS-SLTVFENVAFPLREHTKLPESLIRELVLM 127 (263)
T ss_pred -------------------hhccCHHHHH----HHHhheeEEeecccccc-ccchhHhhheehHhhccCCHHHHHHHHHH
Confidence 4444433221 12234999999998887 699999999864333323 233444445
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
-++++|++... .+.|+ .+|||||++|+++|||++.+|+++++||||+ |||.+...+.++|+++.+.
T Consensus 128 KL~~VGL~~~~-~~~~P---------sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~ 197 (263)
T COG1127 128 KLELVGLRGAA-ADLYP---------SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197 (263)
T ss_pred HHHhcCCChhh-hhhCc---------hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 57888885221 23577 6999999999999999999999999999999 9999999999999998765
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
-.|++.-+...+|||
T Consensus 198 T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 198 TVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred EEEEEECChHHHHhhhceE
Confidence 456666666666664
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=308.54 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=160.7
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|+++ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~-----L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~-- 68 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA-----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQD-- 68 (343)
T ss_pred CEEEEEEEEEECCCCcceEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 58999999999632 223 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+..++...++.. .+.|||+||++.++. .+||++|+++...... ......+++.+
T Consensus 69 --------------------i~~~~~~~l~~~----r~~Ig~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~v~e 123 (343)
T TIGR02314 69 --------------------LTTLSNSELTKA----RRQIGMIFQHFNLLS-SRTVFGNVALPLELDNTPKDEIKRKVTE 123 (343)
T ss_pred --------------------CCcCCHHHHHHH----hcCEEEEECCccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444333221 234999999987664 5799999987643222 22334566788
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++... .+.++ .+||||||||++|||||+.+|+++|+||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~vgL~~~--~~~~~---------~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~ 192 (343)
T TIGR02314 124 LLALVGLGDK--HDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192 (343)
T ss_pred HHHHcCCchh--hhCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 8999998422 22344 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..+||||
T Consensus 193 tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 193 TILLITHEMDVVKRICDCV 211 (343)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 467788888888875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=358.85 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=191.9
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc----c-------CCCCceEEEeEEEEcCCC-CccccccCceeee
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR----T-------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSD 97 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~is 97 (317)
+..+.......|..+.....+.+|+.++++.+++.. . +..+.|+|+||+|+|+++ ..+ |+|||
T Consensus 1232 ~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~v-----L~~is 1306 (1522)
T TIGR00957 1232 VTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV-----LRHIN 1306 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCccc-----cccee
Confidence 345566777888999999999999999986554322 0 123569999999999754 334 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||.+||||+||||||||+++|.|+++ |++|+|++||.+ +++++...+|
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~d----------------------I~~i~~~~LR 1359 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLN----------------------IAKIGLHDLR 1359 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEE----------------------ccccCHHHHH
Confidence 9999999999999999999999999999999 999999999998 7889999999
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
++ |+++||+|.+|++ ||++|+.... ....+++.++++.++++ +..+|+|+++.++++| ..|
T Consensus 1360 ~~-------i~iVpQdp~LF~g--TIr~NLdp~~------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G--~~L 1422 (1522)
T TIGR00957 1360 FK-------ITIIPQDPVLFSG--SLRMNLDPFS------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG--ENL 1422 (1522)
T ss_pred hc-------CeEECCCCcccCc--cHHHHcCccc------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC--CcC
Confidence 88 9999999999976 9999996321 12234588999999984 5567889999999999 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||||||++||||++++|+++||||||| ||++|++.+++.|++..
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999 99999999999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=287.64 Aligned_cols=196 Identities=17% Similarity=0.204 Sum_probs=155.1
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
||+++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~---- 66 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPA-----LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQD---- 66 (216)
T ss_pred CeEEEEEEEEecCCCeeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEe----
Confidence 58999999999653 234 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~ 225 (317)
+...+.. .+++. ++|++|++.++. .+|+.+|+.+........ ....+++.
T Consensus 67 ------------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~ 120 (216)
T TIGR00960 67 ------------------LTRLRGREIPFLRRH-------IGMVFQDHRLLS-DRTVYDNVAFPLRIIGVPPRDANERVS 120 (216)
T ss_pred ------------------hhhcChhHHHHHHHh-------ceEEecCccccc-cccHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3333222 23333 999999987554 579999998754322111 23345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 189 (216)
T TIGR00960 121 AALEKVGLEGKA---HALP--------MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGT 189 (216)
T ss_pred HHHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC
Confidence 888888874221 2233 6899999999999999999999999999999 9999999999999988542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 190 tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 190 TVLVATHDINLVETYRHRT 208 (216)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 456777777777764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=357.57 Aligned_cols=223 Identities=11% Similarity=0.035 Sum_probs=188.8
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc--------------------------------------cCCCCc
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR--------------------------------------TRIGSL 71 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 71 (317)
+.+++......|..+.....+.+|+.++++..++.. ....+.
T Consensus 1229 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 1308 (1560)
T PTZ00243 1229 TTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGS 1308 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCe
Confidence 345556667778888899999999999885322110 001246
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+|+||+|+|+++...+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|++||.+
T Consensus 1309 I~f~nVsf~Y~~~~~~v----L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~d------ 1373 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLV----LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGRE------ 1373 (1560)
T ss_pred EEEEEEEEEeCCCCCce----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE------
Confidence 99999999997653322 999999999999999999999999999999999999 999999999998
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+..++.+.+|++ |+++||++.+|++ ||++||.... ....+++.++++.+
T Consensus 1374 ----------------i~~i~l~~LR~~-------I~iVpQdp~LF~g--TIreNIdp~~------~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1374 ----------------IGAYGLRELRRQ-------FSMIPQDPVLFDG--TVRQNVDPFL------EASSAEVWAALELV 1422 (1560)
T ss_pred ----------------cccCCHHHHHhc-------ceEECCCCccccc--cHHHHhCccc------CCCHHHHHHHHHHC
Confidence 778888899888 9999999999976 9999996432 12235699999999
Q ss_pred CCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc-cceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 232 NCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP-PAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 232 ~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~-p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++ +..+++|+++.++++| .+||||||||++|||||+++ |+++||||||| ||+.+++.+++.|++..
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G--~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGG--SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred CChHHHhhCcccccccccCCc--CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence 995 5567899999999999 89999999999999999995 89999999999 99999999999998864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=298.62 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=164.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..++++||+++|+....+ |+||||+|++|+++||+||||||||||+|+|+|++. |++|+|.++|.+
T Consensus 3 ~~i~~~~l~k~~~~~~~~-----l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~---- 68 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTA-----LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYD---- 68 (293)
T ss_pred ceeeecceEEEeCCCCEE-----EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEe----
Confidence 468899999999843334 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
... +...++++ |||+||++. +...+|++||+.|...... .....++++.+++
T Consensus 69 ------------------~~~-~~~~~~~~-------igy~~~~~~-~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l 121 (293)
T COG1131 69 ------------------VVK-EPAKVRRR-------IGYVPQEPS-LYPELTVRENLEFFARLYGLSKEEAEERIEELL 121 (293)
T ss_pred ------------------Ccc-CHHHHHhh-------eEEEccCCC-CCccccHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 211 14455665 999999997 6668999999998654332 2244566788999
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.++++... +..+ ..||+|||||+.||+||+.+|+++||||||+ |||.++..+.+.|+++.+.
T Consensus 122 ~~~~L~~~~---~~~~--------~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tv 190 (293)
T COG1131 122 ELFGLEDKA---NKKV--------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190 (293)
T ss_pred HHcCCchhh---Ccch--------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEE
Confidence 999985322 4445 7999999999999999999999999999999 9999999999999999764
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
+.|.+..+..+||||
T Consensus 191 lissH~l~e~~~~~d~v 207 (293)
T COG1131 191 LLSTHILEEAEELCDRV 207 (293)
T ss_pred EEeCCcHHHHHHhCCEE
Confidence 567788888888875
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=305.79 Aligned_cols=196 Identities=18% Similarity=0.178 Sum_probs=157.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 m~~l~i~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~--- 67 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQV-----IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRV--- 67 (356)
T ss_pred CCEEEEEeEEEEeCCCCEE-----EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEE---
Confidence 3479999999999433334 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...++. ++ .|||+||++.+|+ .+||++|+.++..... ......+++.++
T Consensus 68 -------------------i~~~~~~--~r-------~ig~v~Q~~~lfp-~~tv~eNi~~~~~~~~~~~~~~~~~~~~~ 118 (356)
T PRK11650 68 -------------------VNELEPA--DR-------DIAMVFQNYALYP-HMSVRENMAYGLKIRGMPKAEIEERVAEA 118 (356)
T ss_pred -------------------CCCCCHH--HC-------CEEEEeCCccccC-CCCHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 3333332 22 3999999997664 6899999998753222 222334567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 119 l~~~gL~~~--~~~~~---------~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 187 (356)
T PRK11650 119 ARILELEPL--LDRKP---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTT 187 (356)
T ss_pred HHHcCChhH--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 999998422 22333 6999999999999999999999999999999 9999999999999988654
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 188 ii~vTHd~~ea~~l~D~i 205 (356)
T PRK11650 188 SLYVTHDQVEAMTLADRV 205 (356)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 346666666667764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=287.93 Aligned_cols=194 Identities=19% Similarity=0.240 Sum_probs=153.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------ 63 (235)
T cd03261 1 IELRGLTKSFGGR-TV-----LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGED------ 63 (235)
T ss_pred CeEEEEEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC-CChHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG-DSDVEKQYNQI 226 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~ 226 (317)
+...+. ..+++. |+|++|++.+++ .+|+.+|+.+... +.. ......+++.+
T Consensus 64 ----------------~~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (235)
T cd03261 64 ----------------ISGLSEAELYRLRRR-------MGMLFQSGALFD-SLTVFENVAFPLREHTRLSEEEIREIVLE 119 (235)
T ss_pred ----------------ccccChhhHHHHhcc-------eEEEccCcccCC-CCcHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 333332 233333 999999987655 5799999987532 111 11223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 188 (235)
T cd03261 120 KLEAVGLRGAE---DLYP--------AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188 (235)
T ss_pred HHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 88888874221 2333 6899999999999999999999999999999 9999999999999998642
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 189 tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 189 TSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred EEEEEecCHHHHHHhcCEE
Confidence 446677777777764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=282.17 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=155.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|+++.|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~i-----l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~----- 65 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAA-----LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGED----- 65 (214)
T ss_pred CEEEEeeeEEeCCCcee-----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE-----
Confidence 58999999999533334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~ 226 (317)
+..++.. .+++. ++|++|++.++. ..|+.+|+.+....... .....+++.+
T Consensus 66 -----------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (214)
T TIGR02673 66 -----------------VNRLRGRQLPLLRRR-------IGVVFQDFRLLP-DRTVYENVALPLEVRGKKEREIQRRVGA 120 (214)
T ss_pred -----------------cccCCHHHHHHHHhh-------eEEEecChhhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333322 23333 999999987554 57999999875332211 1223456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T TIGR02673 121 ALRQVGLEHKA---DAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189 (214)
T ss_pred HHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 88888874221 2223 6899999999999999999999999999999 9999999999999997542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|++
T Consensus 190 ii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 190 VIVATHDLSLVDRVAHRV 207 (214)
T ss_pred EEEEeCCHHHHHHhcCEE
Confidence 457777777777764
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=346.40 Aligned_cols=238 Identities=13% Similarity=0.125 Sum_probs=193.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEE
Q 021147 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSL 106 (317)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~v 106 (317)
...+.|..+..++.+..|+.++++.++.... .....|+++||+|+|++.. .+ |+|+||+|++||++
T Consensus 340 ~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v-----L~~isl~i~~Ge~v 414 (1466)
T PTZ00265 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI-----YKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce-----eccceEEEcCCCEE
Confidence 3456788889999999999999987654321 1113599999999997532 33 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC-cccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhh
Q 021147 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAH 185 (317)
Q Consensus 107 aIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~-g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (317)
|||||||||||||+++|+|+|+ |++|+|+++ |.+ +..++...+|++
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~----------------------i~~~~~~~lr~~------ 461 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYD-----PTEGDIIINDSHN----------------------LKDINLKWWRSK------ 461 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhcc-----CCCCeEEEeCCcc----------------------hhhCCHHHHHHh------
Confidence 9999999999999999999999 999999994 565 566777777777
Q ss_pred hccccccccccccchhhHHHHHHhhhccCC--------------------------------------------------
Q 021147 186 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-------------------------------------------------- 215 (317)
Q Consensus 186 ~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-------------------------------------------------- 215 (317)
||||+|++.+|+. ||++|+.++.....
T Consensus 462 -Ig~V~Q~~~LF~~--TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 -IGVVSQDPLLFSN--SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred -ccEecccccchhc--cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 9999999998864 99999998631000
Q ss_pred --CChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHH
Q 021147 216 --DSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENEL 290 (317)
Q Consensus 216 --~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~ 290 (317)
......+++.++++.++++ +..+++|+.+.++++| ..||||||||++||||++++|+++||||||+ ||+.++.
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g--~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~ 616 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA--SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 0012345688899999985 4468999999999998 8999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 291 IIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 291 ~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+++.|+++.+. ..|+++.+ ..+|+|
T Consensus 617 ~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~I 649 (1466)
T PTZ00265 617 LVQKTINNLKGNENRITIIIAHRLSTI-RYANTI 649 (1466)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEE
Confidence 999999998531 44566655 356653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=297.86 Aligned_cols=195 Identities=16% Similarity=0.213 Sum_probs=158.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|.+
T Consensus 6 ~~i~i~~l~k~~~~~-~~-----l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~---- 70 (306)
T PRK13537 6 APIDFRNVEKRYGDK-LV-----VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEP---- 70 (306)
T ss_pred ceEEEEeEEEEECCe-EE-----EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEe----
Confidence 579999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+.... ...+++ |||+||++.++ ..+|+++|+.+...... ......+++.+++
T Consensus 71 ------------------~~~~~-~~~~~~-------ig~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 123 (306)
T PRK13537 71 ------------------VPSRA-RHARQR-------VGVVPQFDNLD-PDFTVRENLLVFGRYFGLSAAAARALVPPLL 123 (306)
T ss_pred ------------------cccch-HHHHhc-------EEEEeccCcCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32222 234444 99999998755 46899999986543222 2223345566788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ ..||+||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 124 ~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til 192 (306)
T PRK13537 124 EFAKLENKA---DAKV--------GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTIL 192 (306)
T ss_pred HHcCCchHh---cCch--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888874222 3444 7899999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|.+..+..+||||
T Consensus 193 l~sH~l~e~~~~~d~i 208 (306)
T PRK13537 193 LTTHFMEEAERLCDRL 208 (306)
T ss_pred EECCCHHHHHHhCCEE
Confidence 567888888888875
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=281.26 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=152.9
Q ss_pred EEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 73 DAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 73 ~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~l~~~~~~~~~~i-----l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 64 (211)
T cd03225 1 ELKNLSFSYPDGARPA-----LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKD------ 64 (211)
T ss_pred CceeEEEecCCCCeee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE------
Confidence 478999999752 234 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.......|+.+|+.+...... ......+++.++++.
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 65 ----------------LTKLSLKELRRK-------VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121 (211)
T ss_pred ----------------cccCCHHHHHhh-------ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333444444544 99999997532335799999986532211 112234456778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. .
T Consensus 122 ~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~ 190 (211)
T cd03225 122 VGLEGLR---DRSP--------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIV 190 (211)
T ss_pred cCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 8874211 2223 6899999999999999999999999999999 9999999999999998653 5
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+..++|++
T Consensus 191 sH~~~~~~~~~d~i 204 (211)
T cd03225 191 THDLDLLLELADRV 204 (211)
T ss_pred eCCHHHHHHhCCEE
Confidence 56777777777764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=302.04 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=158.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 4 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~--- 69 (351)
T PRK11432 4 KNFVVLKNITKRFGSN-TV-----IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGED--- 69 (351)
T ss_pred CcEEEEEeEEEEECCe-EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEE---
Confidence 5689999999999753 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~ 227 (317)
+...+. .++ .|||+||++.+|+ .+||++|+.|+.... .......+++.++
T Consensus 70 -------------------i~~~~~--~~r-------~ig~vfQ~~~lfp-~~tv~eNi~~~l~~~~~~~~~~~~~v~~~ 120 (351)
T PRK11432 70 -------------------VTHRSI--QQR-------DICMVFQSYALFP-HMSLGENVGYGLKMLGVPKEERKQRVKEA 120 (351)
T ss_pred -------------------CCCCCH--HHC-------CEEEEeCCcccCC-CCCHHHHHHHHHhHcCCCHHHHHHHHHHH
Confidence 333332 122 3999999997665 589999999875322 2223445677888
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 121 l~~~gl~~~--~~r~~---------~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 189 (351)
T PRK11432 121 LELVDLAGF--EDRYV---------DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNIT 189 (351)
T ss_pred HHHcCCchh--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 999987422 22344 6999999999999999999999999999999 9999999999999998654
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 190 ii~vTHd~~e~~~laD~i 207 (351)
T PRK11432 190 SLYVTHDQSEAFAVSDTV 207 (351)
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 345666666666764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=281.60 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=152.1
Q ss_pred eEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~i-----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~--- 67 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA-----LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTD--- 67 (218)
T ss_pred CeEeeeEEEecCCCcceeE-----EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEe---
Confidence 5789999999752 234 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
+...+...... ...+.++|++|++.++. .+|+.+|+.+........ ....+++.++
T Consensus 68 -------------------~~~~~~~~~~~---~~~~~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 124 (218)
T cd03255 68 -------------------ISKLSEKELAA---FRRRHIGFVFQSFNLLP-DLTALENVELPLLLAGVPKKERRERAEEL 124 (218)
T ss_pred -------------------hhhcchhHHHH---HHhhcEEEEeeccccCC-CCcHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 33333221110 01123999999987554 579999998754322211 2234567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 193 (218)
T cd03255 125 LERVGLGDRL---NHYP--------SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193 (218)
T ss_pred HHHcCCchhh---hcCh--------hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999998652
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|+|
T Consensus 194 ii~~sH~~~~~~-~~d~v 210 (218)
T cd03255 194 IVVVTHDPELAE-YADRI 210 (218)
T ss_pred EEEEECCHHHHh-hhcEE
Confidence 456666665 66664
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=290.89 Aligned_cols=197 Identities=19% Similarity=0.294 Sum_probs=156.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++...+ |+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 68 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKA-----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGRE----- 68 (274)
T ss_pred eEEEEEEEEEeCCCCee-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEE-----
Confidence 79999999999643334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+...+...+++. |||++|++.......|+.+|+.++..... ......+++.++++
T Consensus 69 -----------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 124 (274)
T PRK13647 69 -----------------VNAENEKWVRSK-------VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALK 124 (274)
T ss_pred -----------------CCCCCHHHHHhh-------EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHH
Confidence 434444444444 99999997422234699999987543211 11223455677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... . .... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~~L~~~--~-~~~~--------~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili 193 (274)
T PRK13647 125 AVRMWDF--R-DKPP--------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV 193 (274)
T ss_pred HCCCHHH--h-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 8887421 1 2233 6999999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 194 ~tH~~~~~~~~~d~i 208 (274)
T PRK13647 194 ATHDVDLAAEWADQV 208 (274)
T ss_pred EeCCHHHHHHhCCEE
Confidence 457777777778774
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=301.48 Aligned_cols=224 Identities=18% Similarity=0.174 Sum_probs=197.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccccCC---------CCceEEEeEEEEcCCCCccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~I~~~nls~~y~~~~~~~~~~~L~~isl~ 99 (317)
-++-|..-....++.+.+++...++.++++..+.+....+ .+.+.|+||+|.|....++ |+++||+
T Consensus 211 qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~i-----L~~isf~ 285 (497)
T COG5265 211 QLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-----LNGISFT 285 (497)
T ss_pred hhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchh-----hcCcccc
Confidence 4566777778888888888888888888887655443321 2358999999999777665 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
+++|+.+|+|||||+||||++++|.++|+ +++|.|.+||++ ++......+|+.
T Consensus 286 i~~g~tvAiVg~SG~gKsTI~rllfRFyD-----~~sG~I~id~qd----------------------ir~vtq~slR~a 338 (497)
T COG5265 286 IPLGKTVAIVGESGAGKSTILRLLFRFYD-----VNSGSITIDGQD----------------------IRDVTQQSLRRA 338 (497)
T ss_pred ccCccEEEEEeCCCCcHHHHHHHHHHHhC-----CcCceEEEcchh----------------------HHHhHHHHHHHH
Confidence 99999999999999999999999999999 999999999998 777888888888
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
||+|||+..||+. |++.|+.++.+....++ +.++++.+.++ +..+|+||.+.||++| ..|||
T Consensus 339 -------Ig~VPQDtvLFND--ti~yni~ygr~~at~ee-----v~aaa~~aqi~~fi~~lP~gy~t~Vgerg--lklSg 402 (497)
T COG5265 339 -------IGIVPQDTVLFND--TIAYNIKYGRPDATAEE-----VGAAAEAAQIHDFIQSLPEGYDTGVGERG--LKLSG 402 (497)
T ss_pred -------hCcCcccceehhh--hHHHHHhccCccccHHH-----HHHHHHHhhhhHHHHhCchhhhcccchhe--eeccC
Confidence 9999999999976 89999999877665544 78888888885 6678999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
|||||++|||+++++|++++|||+|| ||..||+.++..|++..
T Consensus 403 gekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~ 446 (497)
T COG5265 403 GEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446 (497)
T ss_pred chHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999 99999999999999875
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=291.71 Aligned_cols=196 Identities=17% Similarity=0.185 Sum_probs=158.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++|+++.|+.... ++||||+|+.||.+||.||||||||||+|+|+||.. |++|.|.++|+.
T Consensus 2 ~i~i~~~~~~~~~~~a------~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~----- 65 (345)
T COG1118 2 SIRINNVKKRFGAFGA------LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRV----- 65 (345)
T ss_pred ceeehhhhhhcccccc------cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEe-----
Confidence 5899999999976533 999999999999999999999999999999999999 999999999983
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---CCChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---GDSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~ 227 (317)
+.+......+ -++||+|+|+..+|. .|||++||+|+.... ........++.++
T Consensus 66 -----------------l~D~~~~~~~------~R~VGfvFQ~YALF~-HmtVa~NIAFGl~~~~~~p~~~~~r~rv~el 121 (345)
T COG1118 66 -----------------LFDVSNLAVR------DRKVGFVFQHYALFP-HMTVADNIAFGLKVRKERPSEAEIRARVEEL 121 (345)
T ss_pred -----------------ccchhccchh------hcceeEEEechhhcc-cchHHhhhhhcccccccCCChhhHHHHHHHH
Confidence 1111111111 123999999998665 899999999986432 2223456677788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+.+. .+.+.|+ .+|||||+||+|+|||++..|++|+||||.. ||..-+..+...|+++...
T Consensus 122 L~lvqL~--~la~ryP---------~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~t 190 (345)
T COG1118 122 LRLVQLE--GLADRYP---------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190 (345)
T ss_pred HHHhccc--chhhcCc---------hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCce
Confidence 8888763 2445788 6999999999999999999999999999999 9999999999999998755
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
-.|+...+.+.+|||
T Consensus 191 tvfVTHD~eea~~ladrv 208 (345)
T COG1118 191 TVFVTHDQEEALELADRV 208 (345)
T ss_pred EEEEeCCHHHHHhhcceE
Confidence 456666667777765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=305.55 Aligned_cols=196 Identities=16% Similarity=0.254 Sum_probs=161.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 ~~L~~~nls~~y~~~-~v-----L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~---- 66 (402)
T PRK09536 2 PMIDVSDLSVEFGDT-TV-----LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDD---- 66 (402)
T ss_pred ceEEEeeEEEEECCE-EE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEE----
Confidence 579999999999754 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c----CCCChHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M----EGDSDVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~----~~~~~~~~~~~ 224 (317)
+...+...++++ +||++|++.++ +.+|+.+|+.++.. + ........+++
T Consensus 67 ------------------i~~~~~~~~~~~-------ig~v~q~~~l~-~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v 120 (402)
T PRK09536 67 ------------------VEALSARAASRR-------VASVPQDTSLS-FEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120 (402)
T ss_pred ------------------cCcCCHHHHhcc-------eEEEccCCCCC-CCCCHHHHHHhccchhcccccCCCHHHHHHH
Confidence 444555555555 99999998653 35899999987642 1 11123455677
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 121 ~~~le~vgl~~~~---~~~~--------~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g 189 (402)
T PRK09536 121 ERAMERTGVAQFA---DRPV--------TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189 (402)
T ss_pred HHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 8889999974222 3344 7999999999999999999999999999999 9999999999999998753
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 190 ~TIIivsHdl~~~~~~adri 209 (402)
T PRK09536 190 KTAVAAIHDLDLAARYCDEL 209 (402)
T ss_pred CEEEEEECCHHHHHHhCCEE
Confidence 467778887888874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=282.23 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=153.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc-----cCCCCCCcCcEEEECcccC
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~-----~p~~~~p~~G~I~i~g~~~ 146 (317)
|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|++ + |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~- 68 (227)
T cd03260 1 IELRDLNVYYGDK-HA-----LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKD- 68 (227)
T ss_pred CEEEEEEEEcCCc-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEE-
Confidence 5789999999754 34 99999999999999999999999999999999999 7 999999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~ 222 (317)
+...+ ...+++. ++|++|++.++ .+|+.+|+.+....... . ....+
T Consensus 69 ---------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~ 118 (227)
T cd03260 69 ---------------------IYDLDVDVLELRRR-------VGMVFQKPNPF--PGSIYDNVAYGLRLHGIKLKEELDE 118 (227)
T ss_pred ---------------------hhhcchHHHHHHhh-------EEEEecCchhc--cccHHHHHHhHHHhcCCCcHHHHHH
Confidence 33333 2333344 99999998766 57999999875432111 1 12345
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++.... ...+.. .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 119 ~~~~~l~~~~l~~~~-~~~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 119 RVEEALRKAALWDEV-KDRLHA--------LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK 189 (227)
T ss_pred HHHHHHHHcCCChHH-hccCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence 677888888874221 111102 6899999999999999999999999999999 999999999999999865
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 190 ~~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 190 EYTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CcEEEEEeccHHHHHHhCCEE
Confidence 2 456676666677764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=280.02 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=153.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||++.|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQA-----LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHD----- 65 (222)
T ss_pred CEEEEeeEEEecCCCeE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 58999999999433334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHH---HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSS---LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+... +++. ++|++|++.++ ..+|+.+|+.+...... ......+++.+
T Consensus 66 -----------------i~~~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (222)
T PRK10908 66 -----------------ITRLKNREVPFLRRQ-------IGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVSA 120 (222)
T ss_pred -----------------cccCChhHHHHHHhh-------eEEEecCcccc-ccccHHHHHHhHHHhcCCCHHHHHHHHHH
Confidence 33333222 3333 99999998644 35799999987532221 11223345667
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (222)
T PRK10908 121 ALDKVGLLDKA---KNFP--------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189 (222)
T ss_pred HHHHcCChhhh---hCCc--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence 78888874221 2223 6899999999999999999999999999999 9999999999999988542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|||
T Consensus 190 iii~sH~~~~~~~~~d~i 207 (222)
T PRK10908 190 VLMATHDIGLISRRSYRM 207 (222)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 457777777777764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=280.19 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=151.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------ 63 (213)
T cd03259 1 LELKGLSKTYGSV-RA-----LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRD------ 63 (213)
T ss_pred CeeeeeEEEeCCe-ee-----ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE------
Confidence 5789999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+. .++. ++|+||++.++. .+|+++|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~~~~--~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (213)
T cd03259 64 ----------------VTGVPP--ERRN-------IGMVFQDYALFP-HLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117 (213)
T ss_pred ----------------cCcCch--hhcc-------EEEEcCchhhcc-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 322221 2223 999999987554 5799999987532221 112234456778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 186 (213)
T cd03259 118 VGLEGLL---NRYP--------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186 (213)
T ss_pred cCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 187 ~sH~~~~~~~~~d~v 201 (213)
T cd03259 187 VTHDQEEALALADRI 201 (213)
T ss_pred EecCHHHHHHhcCEE
Confidence 446666666777764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=300.17 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=158.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~--- 67 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAF-TA-----LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRD--- 67 (353)
T ss_pred CcEEEEEEEEEEeCCe-EE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEE---
Confidence 4579999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...++. ++ .+||+||++.+|+ .+||++|++|+..... ......+++.++
T Consensus 68 -------------------~~~~~~~--~r-------~ig~v~Q~~~lfp-~~tv~eNi~~~~~~~~~~~~~~~~~~~~~ 118 (353)
T TIGR03265 68 -------------------ITRLPPQ--KR-------DYGIVFQSYALFP-NLTVADNIAYGLKNRGMGRAEVAERVAEL 118 (353)
T ss_pred -------------------CCCCCHH--HC-------CEEEEeCCcccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3333332 22 3999999997775 6899999998753222 223445678889
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+|||||+||++|||||+.+|++++||||++ ||+.++..+.+.|+++.+.
T Consensus 119 l~~l~L~~~--~~~~~---------~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t 187 (353)
T TIGR03265 119 LDLVGLPGS--ERKYP---------GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187 (353)
T ss_pred HHHcCCCch--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 999998432 22333 6999999999999999999999999999999 9999999999999988653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 188 vi~vTHd~~ea~~l~d~i 205 (353)
T TIGR03265 188 TIMVTHDQEEALSMADRI 205 (353)
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 446666666666664
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=283.08 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=153.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||++.|+.+..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQA-----LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTD----- 65 (243)
T ss_pred CeEEEeeeeecCCCcce-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEE-----
Confidence 58999999999722334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------CCCh
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------GDSD 218 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~~~~ 218 (317)
+...+.. .+++. ++|+||++.+++ .+|+.+|+.+..... ....
T Consensus 66 -----------------~~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (243)
T TIGR02315 66 -----------------ITKLRGKKLRKLRRR-------IGMIFQHYNLIE-RLTVLENVLHGRLGYKPTWRSLLGRFSE 120 (243)
T ss_pred -----------------hhhCCHHHHHHHHhh-------eEEEcCCCcccc-cccHHHHHhhcccccccchhhhhccccH
Confidence 3333321 23333 999999987554 579999997643110 1112
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
...+++.++++.+++.... +... ..|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+
T Consensus 121 ~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 189 (243)
T TIGR02315 121 EDKERALSALERVGLADKA---YQRA--------DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189 (243)
T ss_pred HHHHHHHHHHHHcCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 3345667788888874211 2233 6899999999999999999999999999999 99999999999999
Q ss_pred HHHHh-------cCCCcchhhcccCCC
Q 021147 298 YCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+...+|+|
T Consensus 190 ~~~~~~~~tiii~tH~~~~~~~~~d~v 216 (243)
T TIGR02315 190 RINKEDGITVIINLHQVDLAKKYADRI 216 (243)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 88542 456677776677764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=279.19 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=153.6
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|++.. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i-----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~-- 68 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA-----VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFD-- 68 (218)
T ss_pred CeEEEEEEEecCCCCcccee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEE--
Confidence 589999999997541 33 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+.. ....+++. ++|++|++.++. .+|+.+|+.+...... ......+++.+
T Consensus 69 --------------------~~~-~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 119 (218)
T cd03266 69 --------------------VVK-EPAEARRR-------LGFVSDSTGLYD-RLTARENLEYFAGLYGLKGDELTARLEE 119 (218)
T ss_pred --------------------ccc-CHHHHHhh-------EEEecCCcccCc-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 22334444 999999986554 5799999986543221 12233456677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 188 (218)
T cd03266 120 LADRLGMEELL---DRRV--------GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188 (218)
T ss_pred HHHHcCCHHHH---hhhh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 88888874221 2233 7899999999999999999999999999999 9999999999999998542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+||+
T Consensus 189 ii~~tH~~~~~~~~~d~i 206 (218)
T cd03266 189 ILFSTHIMQEVERLCDRV 206 (218)
T ss_pred EEEEeCCHHHHHHhcCEE
Confidence 455666666666653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=277.54 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=152.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 64 (214)
T cd03292 1 IEFINVTKTYPNGTAA-----LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQD------ 64 (214)
T ss_pred CEEEEEEEEeCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE------
Confidence 5789999999654334 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIV 227 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~ 227 (317)
+...+.. .+++. ++|++|++.+++ .+|+.+|+.+..... .......+++.++
T Consensus 65 ----------------i~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (214)
T cd03292 65 ----------------VSDLRGRAIPYLRRK-------IGVVFQDFRLLP-DRNVYENVAFALEVTGVPPREIRKRVPAA 120 (214)
T ss_pred ----------------cccCCHHHHHHHHHh-------eEEEecCchhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333322 23333 999999987554 579999998754221 1122334566778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ti 189 (214)
T cd03292 121 LELVGLSHKH---RALP--------AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTV 189 (214)
T ss_pred HHHcCCHHHh---hCCh--------hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEE
Confidence 8888874221 2223 6899999999999999999999999999999 9999999999999997542
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|++
T Consensus 190 iivtH~~~~~~~~~d~i 206 (214)
T cd03292 190 VVATHAKELVDTTRHRV 206 (214)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 456666666667763
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=282.02 Aligned_cols=195 Identities=17% Similarity=0.186 Sum_probs=152.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 64 (241)
T cd03256 1 IEVENLSKTYPNGKKA-----LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTD------ 64 (241)
T ss_pred CEEeeEEEecCCccEE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEe------
Confidence 5789999999752334 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCC---hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------CCChH
Q 021147 152 LQEYTIPRGVRHGELVIRRSD---SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------GDSDV 219 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~~~~~ 219 (317)
+...+ ...+++. ++|+||++.++. .+|+.+|+.+..... .....
T Consensus 65 ----------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (241)
T cd03256 65 ----------------INKLKGKALRQLRRQ-------IGMIFQQFNLIE-RLSVLENVLSGRLGRRSTWRSLFGLFPKE 120 (241)
T ss_pred ----------------ccccCHhHHHHHHhc-------cEEEcccCcccc-cCcHHHHHHhhhcccchhhhhhcccCcHH
Confidence 33333 2233333 999999987554 579999997643210 11123
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 121 ~~~~~~~~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 121 EKQRALAALERVGLLDKA---YQRA--------DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHHHHHHHHHcCChhhh---CCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 345567788888874221 2233 6899999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+|+|
T Consensus 190 ~~~~~~~tii~~tH~~~~~~~~~d~v 215 (241)
T cd03256 190 INREEGITVIVSLHQVDLAREYADRI 215 (241)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8643 456677777777764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=290.36 Aligned_cols=199 Identities=16% Similarity=0.233 Sum_probs=155.3
Q ss_pred ceEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.|+++||+++|+.. ..+ |+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~- 70 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA-----LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVD- 70 (287)
T ss_pred EEEEEEEEEECCCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEE-
Confidence 38999999999643 123 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQY 223 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~ 223 (317)
+...+ ...++++ |||+||++.......||++|+.+...... ......++
T Consensus 71 ---------------------~~~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 122 (287)
T PRK13637 71 ---------------------ITDKKVKLSDIRKK-------VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122 (287)
T ss_pred ---------------------CCCcCccHHHHhhc-------eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH
Confidence 33222 2234444 99999987432234699999987543222 22233456
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.++++...+. +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 123 ~~~~l~~~gL~~~~~~-~~~~--------~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (287)
T PRK13637 123 VKRAMNIVGLDYEDYK-DKSP--------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193 (287)
T ss_pred HHHHHHHcCCCchhhc-cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh
Confidence 7788888887411111 2333 6999999999999999999999999999999 9999999999999998653
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 194 ~g~tvi~vtHd~~~~~~~~drv 215 (287)
T PRK13637 194 YNMTIILVSHSMEDVAKLADRI 215 (287)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE
Confidence 356677777777774
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=288.42 Aligned_cols=199 Identities=17% Similarity=0.254 Sum_probs=157.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++...+ |+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 ~~~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--- 67 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEA-----LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEP--- 67 (277)
T ss_pred CceEEEEEEEEEeCCCCce-----eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE---
Confidence 3579999999999644334 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+...+++. +||++|++..+....|+.+|+.+...... ......+++.++
T Consensus 68 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (277)
T PRK13652 68 -------------------ITKENIREVRKF-------VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121 (277)
T ss_pred -------------------CCcCCHHHHHhh-------eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHH
Confidence 333333444444 99999997422224699999986543222 222334556788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 122 l~~~~l~~~~---~~~~--------~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 190 (277)
T PRK13652 122 LHMLGLEELR---DRVP--------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMT 190 (277)
T ss_pred HHHCCChhHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999988653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 191 vli~tH~~~~~~~~~drv 208 (277)
T PRK13652 191 VIFSTHQLDLVPEMADYI 208 (277)
T ss_pred EEEEecCHHHHHHhCCEE
Confidence 456777777777774
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=277.84 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=148.2
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++||+++|++...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~l~~~~~~~~~~-----l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~------- 63 (205)
T cd03226 1 RIENISFSYKKGTEI-----LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKP------- 63 (205)
T ss_pred CcccEEEEeCCcCce-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE-------
Confidence 468999999752334 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
+.. ...++ .++|++|++.......|+.+|+.+....... ..+++.++++.++
T Consensus 64 ---------------~~~---~~~~~-------~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~l~~~~ 115 (205)
T cd03226 64 ---------------IKA---KERRK-------SIGYVMQDVDYQLFTDSVREELLLGLKELDA---GNEQAETVLKDLD 115 (205)
T ss_pred ---------------hhh---HHhhc-------ceEEEecChhhhhhhccHHHHHhhhhhhcCc---cHHHHHHHHHHcC
Confidence 221 22233 3999999974322346999999875332211 1245778889988
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
+.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+. ..|
T Consensus 116 l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 184 (205)
T cd03226 116 LYALK---ERHP--------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184 (205)
T ss_pred Cchhc---CCCc--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 74221 2233 6899999999999999999999999999999 9999999999999988543 456
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
++..+...+|++
T Consensus 185 ~~~~~~~~~d~i 196 (205)
T cd03226 185 DYEFLAKVCDRV 196 (205)
T ss_pred CHHHHHHhCCEE
Confidence 666666667764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=297.96 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=157.2
Q ss_pred ceEEEeEEEEcCC---CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~---~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|+. ...+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 mi~i~~l~~~y~~~~~~~~i-----l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~-- 68 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA-----LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQD-- 68 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE--
Confidence 5899999999972 2233 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+..++...++. +.+.|||+||++.+++ .+|+.+|+.+...... ......+++.+
T Consensus 69 --------------------i~~~~~~~~~~----~~~~ig~v~q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~ 123 (343)
T PRK11153 69 --------------------LTALSEKELRK----ARRQIGMIFQHFNLLS-SRTVFDNVALPLELAGTPKAEIKARVTE 123 (343)
T ss_pred --------------------CCcCCHHHHHH----HhcCEEEEeCCCccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43444332211 1234999999987554 5799999987643222 12233456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~~gL~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 192 (343)
T PRK11153 124 LLELVGLSDKA---DRYP--------AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL 192 (343)
T ss_pred HHHHcCCchhh---hCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888874221 2233 6899999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 193 tiilvtH~~~~i~~~~d~v 211 (343)
T PRK11153 193 TIVLITHEMDVVKRICDRV 211 (343)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 457777777778774
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=297.09 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=157.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||+++|++.. + |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 39 ~~~i~i~nl~k~y~~~~-~-----l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~--- 104 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA-V-----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVP--- 104 (340)
T ss_pred ceeEEEEEEEEEECCEE-E-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEE---
Confidence 34799999999997543 3 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~ 227 (317)
+.... ...++. |||+||++.++ ..+|+.+|+.+... +........+++.++
T Consensus 105 -------------------~~~~~-~~~~~~-------ig~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l 156 (340)
T PRK13536 105 -------------------VPARA-RLARAR-------IGVVPQFDNLD-LEFTVRENLLVFGRYFGMSTREIEAVIPSL 156 (340)
T ss_pred -------------------CCcch-HHHhcc-------EEEEeCCccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32221 233333 99999998654 46899999986443 222222233455677
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.++++... +..+ ..||+||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 157 l~~~~L~~~~---~~~~--------~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~ti 225 (340)
T PRK13536 157 LEFARLESKA---DARV--------SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTI 225 (340)
T ss_pred HHHcCCchhh---CCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 8888874322 3444 7999999999999999999999999999999 9999999999999998643
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..+||||
T Consensus 226 lisSH~l~e~~~~~d~i 242 (340)
T PRK13536 226 LLTTHFMEEAERLCDRL 242 (340)
T ss_pred EEECCCHHHHHHhCCEE
Confidence 567888888888875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=278.42 Aligned_cols=194 Identities=16% Similarity=0.210 Sum_probs=153.1
Q ss_pred eEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++||++.|++. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 l~~~~l~~~~~~~~~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (220)
T cd03263 1 LQIRNLTKTYKKGTKPA-----VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYS----- 65 (220)
T ss_pred CEEEeeEEEeCCCCcee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEe-----
Confidence 5799999999752 334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+... ...++++ ++|++|++.++. ..|+.+|+.+...... ......+++.++++
T Consensus 66 -----------------~~~~-~~~~~~~-------i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 119 (220)
T cd03263 66 -----------------IRTD-RKAARQS-------LGYCPQFDALFD-ELTVREHLRFYARLKGLPKSEIKEEVELLLR 119 (220)
T ss_pred -----------------cccc-hHHHhhh-------EEEecCcCCccc-cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2221 1233333 999999986553 5799999987543222 12223456778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hc
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-----HA 303 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~ 303 (317)
.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+ ..
T Consensus 120 ~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~ 188 (220)
T cd03263 120 VLGLTDKA---NKRA--------RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILT 188 (220)
T ss_pred HcCCHHHH---hChh--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 88874221 2233 6899999999999999999999999999999 999999999999998764 25
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+.+.+|++
T Consensus 189 sH~~~~~~~~~d~i 202 (220)
T cd03263 189 THSMDEAEALCDRI 202 (220)
T ss_pred cCCHHHHHHhcCEE
Confidence 66777777777764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=279.35 Aligned_cols=199 Identities=18% Similarity=0.184 Sum_probs=154.9
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++|++++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~-- 68 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA-----LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTD-- 68 (233)
T ss_pred CeEEecceEEccCCCCceee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE--
Confidence 589999999997541 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+...... ..+.++|+||++.++. .+|+.+|+.+...... ......+++.+
T Consensus 69 --------------------~~~~~~~~~~~----~~~~i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~ 123 (233)
T cd03258 69 --------------------LTLLSGKELRK----ARRRIGMIFQHFNLLS-SRTVFENVALPLEIAGVPKAEIEERVLE 123 (233)
T ss_pred --------------------cccCCHHHHHH----HHhheEEEccCcccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333222211 1123999999987654 5799999987532211 12223456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.++++... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 192 (233)
T cd03258 124 LLELVGLEDKA---DAYP--------AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL 192 (233)
T ss_pred HHHHCCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 88888874221 2233 6899999999999999999999999999999 9999999999999988653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 193 tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 193 TIVLITHEMEVVKRICDRV 211 (233)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 456677777777764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=281.95 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=152.6
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 63 (236)
T cd03219 1 LEVRGLTKRFGGL-VA-----LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGED------ 63 (236)
T ss_pred CeeeeeEEEECCE-EE-----ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEE------
Confidence 5789999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-----------ChHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-----------SDVE 220 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-----------~~~~ 220 (317)
+...+...+.+ ..++|+||++.+++ .+|+.+|+.+....... ....
T Consensus 64 ----------------~~~~~~~~~~~------~~i~~v~q~~~l~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (236)
T cd03219 64 ----------------ITGLPPHEIAR------LGIGRTFQIPRLFP-ELTVLENVMVAAQARTGSGLLLARARREEREA 120 (236)
T ss_pred ----------------CCCCCHHHHHh------cCEEEEeccccccc-CCCHHHHHHHHHhhccccccccccccccHHHH
Confidence 33333322211 23999999987554 57999999875422111 1223
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 121 ~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 121 RERAEELLERVGLADLA---DRPA--------GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred HHHHHHHHHHcCccchh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 44567778888874221 2333 7999999999999999999999999999999 9999999999999988
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|+|
T Consensus 190 ~~~~~tii~vsH~~~~~~~~~d~i 213 (236)
T cd03219 190 RERGITVLLVEHDMDVVMSLADRV 213 (236)
T ss_pred HHCCCEEEEEecCHHHHHHhCCEE
Confidence 642 456677777777764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=288.79 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=153.8
Q ss_pred eEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|++. ..+ |+||||+|++||+++|+|+||||||||+|+|+|+++ |++|+|.++|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~-----L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~-- 70 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA-----LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERV-- 70 (290)
T ss_pred EEEEEEEEEECCCCcccccc-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 8999999999642 223 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeecc----CChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCC-CChHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEG-DSDVE 220 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~-~~~~~ 220 (317)
+.. .....+++. |||+||++. ++ ..||.+|+.++..... .....
T Consensus 71 --------------------i~~~~~~~~~~~~~~~-------ig~v~q~~~~~l~--~~tv~eni~~~~~~~~~~~~~~ 121 (290)
T PRK13634 71 --------------------ITAGKKNKKLKPLRKK-------VGIVFQFPEHQLF--EETVEKDICFGPMNFGVSEEDA 121 (290)
T ss_pred --------------------CccccccchHHHHHhh-------EEEEeeCchhhhh--hhhHHHHHHHHHHHcCCCHHHH
Confidence 321 223334444 999999873 44 4699999987643222 22233
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.++++ ... +... ..||+||+||++|||||+.+|+++||||||+ ||+.++..+.+.|++
T Consensus 122 ~~~~~~~l~~~gL~~~~~---~~~~--------~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 122 KQKAREMIELVGLPEELL---ARSP--------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred HHHHHHHHHHCCCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 45677888999874 221 2333 6899999999999999999999999999999 999999999999998
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+|||
T Consensus 191 l~~~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 191 LHKEKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8643 456667777777774
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=276.34 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=152.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (213)
T cd03262 1 IEIKNLHKSFGDF-HV-----LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLK------ 63 (213)
T ss_pred CEEEEEEEEECCe-Ee-----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC-CChHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG-DSDVEKQYNQIV 227 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~ 227 (317)
+. ..+...+++. ++|++|++.+++ .+|+.+|+.+... ... ......+++.++
T Consensus 64 ----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~ 119 (213)
T cd03262 64 ----------------LTDDKKNINELRQK-------VGMVFQQFNLFP-HLTVLENITLAPIKVKGMSKAEAEERALEL 119 (213)
T ss_pred ----------------CCccchhHHHHHhc-------ceEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHHH
Confidence 21 1222233444 999999987554 4799999987532 111 112334556778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.++++... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tv 188 (213)
T cd03262 120 LEKVGLADKA---DAYP--------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 188 (213)
T ss_pred HHHcCCHhHh---hhCc--------cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999998652
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 189 i~~sh~~~~~~~~~d~i 205 (213)
T cd03262 189 VVVTHEMGFAREVADRV 205 (213)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 456666666667654
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=275.76 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=150.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 63 (208)
T cd03268 1 LKTNDLTKTYGKK-RV-----LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKS------ 63 (208)
T ss_pred CEEEEEEEEECCe-Ee-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCc------
Confidence 5799999999653 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+... ..+++. ++|++|++.++ ..+|+.+|+.+....... ..+++.++++.+
T Consensus 64 ----------------~~~~--~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~---~~~~~~~~l~~~ 114 (208)
T cd03268 64 ----------------YQKN--IEALRR-------IGALIEAPGFY-PNLTARENLRLLARLLGI---RKKRIDEVLDVV 114 (208)
T ss_pred ----------------ccch--HHHHhh-------EEEecCCCccC-ccCcHHHHHHHHHHhcCC---cHHHHHHHHHHc
Confidence 3221 223333 99999998654 357999999875432211 234567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.++++.+. ..
T Consensus 115 ~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t 183 (208)
T cd03268 115 GLKDSA---KKKV--------KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183 (208)
T ss_pred CCHHHH---hhhH--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 874221 2222 6899999999999999999999999999999 9999999999999987642 55
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+...+|++
T Consensus 184 H~~~~~~~~~d~v 196 (208)
T cd03268 184 HLLSEIQKVADRI 196 (208)
T ss_pred CCHHHHHHhcCEE
Confidence 6777776677764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=291.42 Aligned_cols=195 Identities=18% Similarity=0.188 Sum_probs=154.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 67 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK-VV-----VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEP---- 67 (303)
T ss_pred cEEEEEeEEEEeCCe-EE-----EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE----
Confidence 369999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~a 228 (317)
+... ....++. +||+||++.++ ..+|+.+|+.+... +........+++.+++
T Consensus 68 ------------------~~~~-~~~~~~~-------i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll 120 (303)
T TIGR01288 68 ------------------VPSR-ARLARVA-------IGVVPQFDNLD-PEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120 (303)
T ss_pred ------------------Cccc-HHHHhhc-------EEEEeccccCC-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2221 2233333 99999998655 35799999975432 2222222334556778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.++++... +..+ ..|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til 189 (303)
T TIGR01288 121 EFARLESKA---DVRV--------ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 189 (303)
T ss_pred HHCCChhHh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888864221 2333 6899999999999999999999999999999 9999999999999998542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 190 ~~sH~~~~~~~~~d~i 205 (303)
T TIGR01288 190 LTTHFMEEAERLCDRL 205 (303)
T ss_pred EECCCHHHHHHhCCEE
Confidence 557777777778874
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=277.78 Aligned_cols=193 Identities=15% Similarity=0.196 Sum_probs=152.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~~~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~------ 63 (220)
T cd03265 1 IEVENLVKKYGDF-EA-----VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHD------ 63 (220)
T ss_pred CEEEEEEEEECCE-Ee-----eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEe------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+.. ....++++ ++|++|++.++. .+|+++|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~-~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 118 (220)
T cd03265 64 ----------------VVR-EPREVRRR-------IGIVFQDLSVDD-ELTGWENLYIHARLYGVPGAERRERIDELLDF 118 (220)
T ss_pred ----------------cCc-ChHHHhhc-------EEEecCCccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 222 12233333 999999987554 5799999987532211 122334567788899
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... ...+ .+|||||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 119 ~~l~~~~---~~~~--------~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 119 VGLLEAA---DRLV--------KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred cCCHHHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2333 6999999999999999999999999999999 9999999999999988653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 188 ~tH~~~~~~~~~d~i 202 (220)
T cd03265 188 TTHYMEEAEQLCDRV 202 (220)
T ss_pred EeCCHHHHHHhCCEE
Confidence 346666666666664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=286.89 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=156.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|+++..+ |+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~-- 71 (283)
T PRK13636 4 YILKVEELNYNYSDGTHA-----LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPID-- 71 (283)
T ss_pred ceEEEEeEEEEeCCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECC--
Confidence 479999999999643334 999999999999999999999999999999999999 99999999998611
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
....+...+++. +||+||++.......|+.+|+.+...... ......+++.+++
T Consensus 72 ------------------~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 126 (283)
T PRK13636 72 ------------------YSRKGLMKLRES-------VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNAL 126 (283)
T ss_pred ------------------CCcchHHHHHhh-------EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHH
Confidence 111223344444 99999987422234699999987543222 1222345677888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+||+||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~~~gL~~~~---~~~~--------~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~ti 195 (283)
T PRK13636 127 KRTGIEHLK---DKPT--------HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTI 195 (283)
T ss_pred HHCCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 888874221 2333 7999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 196 llvsH~~~~~~~~~dri 212 (283)
T PRK13636 196 IIATHDIDIVPLYCDNV 212 (283)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 457777777777764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=298.94 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=155.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~i~~l~~~~~~~-~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~---- 66 (369)
T PRK11000 2 ASVTLRNVTKAYGDV-VI-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKR---- 66 (369)
T ss_pred CEEEEEEEEEEeCCe-EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE----
Confidence 469999999999754 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+...+. .++ .|||++|++.+|+ .+||++|+.++..... ......+++.+++
T Consensus 67 ------------------i~~~~~--~~~-------~i~~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l 118 (369)
T PRK11000 67 ------------------MNDVPP--AER-------GVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEEINQRVNQVA 118 (369)
T ss_pred ------------------CCCCCH--hHC-------CEEEEeCCcccCC-CCCHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 333332 122 3999999987664 5899999988643222 2223345677889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~lgL~~~~---~~~~--------~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv 187 (369)
T PRK11000 119 EVLQLAHLL---DRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (369)
T ss_pred HHcCChhhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 998874221 2223 6999999999999999999999999999999 9999999999999988653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|||
T Consensus 188 I~vTHd~~~~~~~~d~i 204 (369)
T PRK11000 188 IYVTHDQVEAMTLADKI 204 (369)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 456666677777764
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=287.85 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=153.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+|.|+..... ...+|+||||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|.+
T Consensus 1 mi~~~~v~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 69 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPF-ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIV----- 69 (288)
T ss_pred CEEEEEEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEE-----
Confidence 58999999999643210 0012999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeecc----CChHHHHHHHHHhhhhcccccccc--ccccchhhHHHHHHhhhccCCC-ChHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVI--RKVNFVIFVVDGLAVLKSMEGD-SDVEKQY 223 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~--~~~~~~~tv~eni~~~~~~~~~-~~~~~~~ 223 (317)
+.. .....+++. +||++|++ .++. .||.+|+.++...... .....++
T Consensus 70 -----------------i~~~~~~~~~~~~~~~-------ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~ 123 (288)
T PRK13643 70 -----------------VSSTSKQKEIKPVRKK-------VGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKI 123 (288)
T ss_pred -----------------CccccccccHHHHHhh-------EEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHH
Confidence 321 222334444 99999987 4454 5999999886432221 2233455
Q ss_pred HHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+.++++.+++. ... +... ..|||||+||++|||+|+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 124 ~~~~l~~~~L~~~~~---~~~~--------~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~ 192 (288)
T PRK13643 124 AAEKLEMVGLADEFW---EKSP--------FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192 (288)
T ss_pred HHHHHHHcCCChhhc---cCCc--------ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 67788888873 221 2333 6899999999999999999999999999999 999999999999998764
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 193 ~g~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 193 SGQTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred CCCEEEEEecCHHHHHHhCCEE
Confidence 2 456677777777764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=342.06 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=195.3
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------------------------CCCCceEEEeEEEEcCCC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------------------------RIGSLTDAKNKILSYTPG 84 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~I~~~nls~~y~~~ 84 (317)
+.+++......|..+.....+.+|+.++++.+++... +..+.|+|+||+|+|+..
T Consensus 1151 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~ 1230 (1490)
T TIGR01271 1151 ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC
Confidence 3445566667788888889999999999865433210 123469999999999753
Q ss_pred -CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccc
Q 021147 85 -AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRH 163 (317)
Q Consensus 85 -~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~ 163 (317)
..+ |+||||+|++||.+||||+||||||||+++|.|+++ + +|+|++||.+
T Consensus 1231 ~~~v-----L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-----~-~G~I~IdG~d------------------ 1281 (1490)
T TIGR01271 1231 GRAV-----LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-----T-EGEIQIDGVS------------------ 1281 (1490)
T ss_pred Ccce-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-----C-CcEEEECCEE------------------
Confidence 334 999999999999999999999999999999999986 4 7999999987
Q ss_pred cceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCC
Q 021147 164 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDD 241 (317)
Q Consensus 164 ~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~ 241 (317)
+..++...+|++ |+|+||+|.+|++ ||++|+.... ....+++.++++.+++. +..+++|
T Consensus 1282 ----i~~i~~~~lR~~-------is~IpQdp~LF~G--TIR~NLdp~~------~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1282 ----WNSVTLQTWRKA-------FGVIPQKVFIFSG--TFRKNLDPYE------QWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred ----cccCCHHHHHhc-------eEEEeCCCccCcc--CHHHHhCccc------CCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 778888899988 9999999999976 9999995422 12345689999999984 4557889
Q ss_pred CCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccC
Q 021147 242 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARN 315 (317)
Q Consensus 242 ~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~ 315 (317)
+++.++++| ..||||||||++|||||+++|+++||||||+ ||+.++..+++.|++..+. -.|+++.+.+ +|
T Consensus 1343 Ldt~v~e~G--~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~D 1419 (1490)
T TIGR01271 1343 LDFVLVDGG--YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQ 1419 (1490)
T ss_pred cccccccCC--CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CC
Confidence 999999999 8999999999999999999999999999999 9999999999999986432 3455555544 56
Q ss_pred CC
Q 021147 316 KV 317 (317)
Q Consensus 316 ~~ 317 (317)
||
T Consensus 1420 rI 1421 (1490)
T TIGR01271 1420 QF 1421 (1490)
T ss_pred EE
Confidence 53
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=277.54 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=148.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 63 (222)
T cd03224 1 LEVENLNAGYGKS-QI-----LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRD------ 63 (222)
T ss_pred CEEeeEEeecCCe-eE-----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHH-HHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSL-RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+.... ++ .++|+||++.+++ .+|+.+|+.+...... ......++.++++.
T Consensus 64 ----------------~~~~~~~~~~~~-------~i~~~~q~~~~~~-~~t~~~~l~~~~~~~~-~~~~~~~~~~~l~~ 118 (222)
T cd03224 64 ----------------ITGLPPHERARA-------GIGYVPEGRRIFP-ELTVEENLLLGAYARR-RAKRKARLERVYEL 118 (222)
T ss_pred ----------------cCCCCHHHHHhc-------CeEEeccccccCC-CCcHHHHHHHHhhhcC-chhHHHHHHHHHHH
Confidence 333333322 22 3999999987554 5799999987543221 11223334455666
Q ss_pred c-CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 231 F-NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 231 ~-~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
+ ++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 187 (222)
T cd03224 119 FPRLKERR---KQLA--------GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187 (222)
T ss_pred HHhhhhhh---hCch--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5 332111 2233 6899999999999999999999999999999 9999999999999988642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|+|
T Consensus 188 ~sH~~~~~~~~~d~i 202 (222)
T cd03224 188 VEQNARFALEIADRA 202 (222)
T ss_pred EeCCHHHHHHhccEE
Confidence 446666666777764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=275.22 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=151.2
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+|+++||++.|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~-- 68 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV-----LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQS-- 68 (221)
T ss_pred CEEEEeeeEEccCCCcceEe-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE--
Confidence 47899999999642 233 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~ 226 (317)
+..++....+.. ..+.++|++|++.+++ ..|+++|+.+....... .....+++.+
T Consensus 69 --------------------~~~~~~~~~~~~---~~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 124 (221)
T TIGR02211 69 --------------------LSKLSSNERAKL---RNKKLGFIYQFHHLLP-DFTALENVAMPLLIGKKSVKEAKERAYE 124 (221)
T ss_pred --------------------hhhcCHhHHHHH---HHhcEEEEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 333333222110 0123999999986554 57999999875322111 1223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.++++... +... ..|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 193 (221)
T TIGR02211 125 MLEKVGLEHRI---NHRP--------SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193 (221)
T ss_pred HHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888874221 2233 6899999999999999999999999999999 9999999999999988642
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|+|
T Consensus 194 tii~~tH~~~~~~~-~d~v 211 (221)
T TIGR02211 194 SFLVVTHDLELAKK-LDRV 211 (221)
T ss_pred EEEEEeCCHHHHhh-cCEE
Confidence 4466665544 4653
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=286.24 Aligned_cols=197 Identities=19% Similarity=0.265 Sum_probs=155.0
Q ss_pred CceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 70 SLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 70 ~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+|+++||+++|++. ..+ |+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~-- 70 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT-----LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDL-- 70 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 379999999999642 223 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+...+++. +||++|++..+....||.+|+.+...... ......+++.+
T Consensus 71 --------------------i~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 123 (279)
T PRK13650 71 --------------------LTEENVWDIRHK-------IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE 123 (279)
T ss_pred --------------------CCcCcHHHHHhh-------ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHH
Confidence 433444445544 99999997433335699999987643221 22233456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~l~~~gL~~~~---~~~~--------~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 192 (279)
T PRK13650 124 ALELVGMQDFK---EREP--------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQM 192 (279)
T ss_pred HHHHCCCHhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 88998874221 2233 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 193 tilivtH~~~~~~-~~dri 210 (279)
T PRK13650 193 TVISITHDLDEVA-LSDRV 210 (279)
T ss_pred EEEEEecCHHHHH-hCCEE
Confidence 346666653 56663
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=281.24 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=152.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-----CcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-----~G~I~i~g~~ 145 (317)
+|+++||+++|++.. + ++|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|+++|++
T Consensus 1 ~l~~~~l~~~~~~~~-~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEKE-A-----LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCee-e-----ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 589999999997543 3 999999999999999999999999999999999999 77 9999999986
Q ss_pred CceeeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEK 221 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~ 221 (317)
+... +...+++. ++|+||++.+++ .|+.+|+.+...... ......
T Consensus 70 ----------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~ 118 (247)
T TIGR00972 70 ----------------------IYDKKIDVVELRRR-------VGMVFQKPNPFP--MSIYDNIAYGPRLHGIKDKKELD 118 (247)
T ss_pred ----------------------ccccccchHHHHhh-------eEEEecCcccCC--CCHHHHHHhHHHhcCCCCHHHHH
Confidence 3221 22233444 999999987665 799999987542221 112334
Q ss_pred HHHHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
+++.++++.+++... ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 119 EIVEESLKKAALWDEVKDRL-HDSA--------LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHHHHcCCCcchhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 556778888887410 111 2223 6899999999999999999999999999999 999999999999998
Q ss_pred HHHh-----cCCCcchhhcccCCC
Q 021147 299 CLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-----~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+|||
T Consensus 190 ~~~~~tiiivsH~~~~~~~~~d~i 213 (247)
T TIGR00972 190 LKKKYTIVIVTHNMQQAARISDRT 213 (247)
T ss_pred HHhcCeEEEEecCHHHHHHhCCEE
Confidence 7642 456666666666664
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=281.26 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=153.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 66 (250)
T PRK11264 2 SAIEVKNLVKKFHGQ-TV-----LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDIT---- 66 (250)
T ss_pred CcEEEeceEEEECCe-ee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE----
Confidence 479999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCC--------hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC-CChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSD--------SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG-DSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~--------~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~-~~~~ 219 (317)
+...+ ...+++. ++|++|++.+++ ..|+.+|+.++.. ... ....
T Consensus 67 ------------------~~~~~~~~~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~ 120 (250)
T PRK11264 67 ------------------IDTARSLSQQKGLIRQLRQH-------VGFVFQNFNLFP-HRTVLENIIEGPVIVKGEPKEE 120 (250)
T ss_pred ------------------ccccccccchhhHHHHhhhh-------EEEEecCcccCC-CCCHHHHHHHHHHHhcCCCHHH
Confidence 22211 1223333 999999987553 4799999986432 111 1122
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 121 ~~~~~~~~l~~~gl~~~~---~~~~--------~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 121 ATARARELLAKVGLAGKE---TSYP--------RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHHHHHHHHHHcCCcchh---hCCh--------hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 345566778888874221 2223 6999999999999999999999999999999 999999999999998
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+...+||+
T Consensus 190 ~~~~~~tvi~~tH~~~~~~~~~d~i 214 (250)
T PRK11264 190 LAQEKRTMVIVTHEMSFARDVADRA 214 (250)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 8642 456666666667764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=277.18 Aligned_cols=189 Identities=21% Similarity=0.243 Sum_probs=149.4
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------- 62 (213)
T cd03235 1 EVEDLTVSYGGH-PV-----LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKP------- 62 (213)
T ss_pred CcccceeEECCE-Ee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCcc-------
Confidence 468999999753 34 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccccc-chhhHHHHHHhhhccC-----CCChHHHHHHHH
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN-FVIFVVDGLAVLKSME-----GDSDVEKQYNQI 226 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~-~~~tv~eni~~~~~~~-----~~~~~~~~~~~~ 226 (317)
+. .+++. ++|++|++.+.. ...|+.+|+.+..... .......+++.+
T Consensus 63 ---------------~~-----~~~~~-------i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 115 (213)
T cd03235 63 ---------------LE-----KERKR-------IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115 (213)
T ss_pred ---------------HH-----HHHhh-------eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHH
Confidence 21 23333 999999986522 2469999998753211 111233456777
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 184 (213)
T cd03235 116 ALERVGLSELA---DRQI--------GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184 (213)
T ss_pred HHHHcCCHHHH---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 88888874211 2233 6899999999999999999999999999999 9999999999999998642
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 185 vi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 185 ILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred EEEEeCCHHHHHHhcCEE
Confidence 566777777777764
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=276.40 Aligned_cols=197 Identities=20% Similarity=0.253 Sum_probs=150.2
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+|+++||+++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~-- 68 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA-----LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKD-- 68 (228)
T ss_pred CeEEEeeeEeccCCCcceee-----ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE--
Confidence 589999999996541 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhccCC-CCh-HHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKSMEG-DSD-VEK 221 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~~~~-~~~-~~~ 221 (317)
+...+. ..+++. ++|++|++.. +...+|+.+|+.+...... ... ...
T Consensus 69 --------------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~ 121 (228)
T cd03257 69 --------------------LLKLSRRLRKIRRKE-------IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121 (228)
T ss_pred --------------------ccccchhhHHHhhcc-------EEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHH
Confidence 333332 233333 9999999842 4456899999976432211 111 111
Q ss_pred HHH-HHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 222 QYN-QIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 222 ~~~-~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
+++ .++++.+++. ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|++
T Consensus 122 ~~~~~~~l~~~~l~~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 122 KEAVLLLLVGVGLPEEVL---NRYP--------HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HHHHHHHHHHCCCChhHh---hCCc--------hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 222 3667777763 111 2233 6899999999999999999999999999999 999999999999998
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|+...+...+|+|
T Consensus 191 ~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 191 LQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 8652 456666666666764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=296.27 Aligned_cols=193 Identities=18% Similarity=0.224 Sum_probs=156.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 ~L~i~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~----- 65 (353)
T PRK10851 2 SIEIANIKKSFGRT-QV-----LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTD----- 65 (353)
T ss_pred EEEEEEEEEEeCCe-EE-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-----
Confidence 48999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC----C-CChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME----G-DSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~----~-~~~~~~~~~~ 225 (317)
+...+. .++ .+||+||++.+|+ .+||.+|+.++.... . ......+++.
T Consensus 66 -----------------i~~~~~--~~r-------~i~~v~Q~~~l~p-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~ 118 (353)
T PRK10851 66 -----------------VSRLHA--RDR-------KVGFVFQHYALFR-HMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118 (353)
T ss_pred -----------------CCCCCH--HHC-------CEEEEecCcccCC-CCcHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 333322 122 3999999987664 589999999864321 1 1123455677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.++++.. .+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 119 ~~l~~~~L~~~--~~~~~---------~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g 187 (353)
T PRK10851 119 QLLEMVQLAHL--ADRYP---------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELK 187 (353)
T ss_pred HHHHHcCCchh--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 88999987422 22333 6999999999999999999999999999999 9999999999999998653
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 188 ~tii~vTHd~~ea~~~~Dri 207 (353)
T PRK10851 188 FTSVFVTHDQEEAMEVADRV 207 (353)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 557777777777764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=275.21 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=150.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~~~~~~~~~-~~-----l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~------ 62 (211)
T cd03264 1 LQLENLTKRYGKK-RA-----LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQD------ 62 (211)
T ss_pred CEEEEEEEEECCE-EE-----EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCc------
Confidence 5799999999654 34 99999999999 999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+ ..+++. ++|++|++.++. .+|+.+|+.+...... ......+++.++++.
T Consensus 63 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (211)
T cd03264 63 ----------------VLKQP-QKLRRR-------IGYLPQEFGVYP-NFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117 (211)
T ss_pred ----------------cccch-HHHHhh-------eEEecCCCcccc-cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33333 334444 999999987654 4799999986432211 112234556778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cC
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----AD 304 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~ 304 (317)
+++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 118 ~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 118 VNLGDRA---KKKI--------GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred CCCHHHH---hCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999988532 45
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|++..+...+||+
T Consensus 187 H~~~~~~~~~d~i 199 (211)
T cd03264 187 HIVEDVESLCNQV 199 (211)
T ss_pred CCHHHHHHhCCEE
Confidence 5666666666653
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=281.00 Aligned_cols=193 Identities=16% Similarity=0.181 Sum_probs=150.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (239)
T cd03296 2 SIEVRNVSKRFGDF-VA-----LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGED----- 65 (239)
T ss_pred EEEEEeEEEEECCE-Ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 48999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-----CChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-----DSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-----~~~~~~~~~~ 225 (317)
+...+. .++ .++|++|++.++. ..|+.+|+.+...... ......+++.
T Consensus 66 -----------------~~~~~~--~~~-------~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (239)
T cd03296 66 -----------------ATDVPV--QER-------NVGFVFQHYALFR-HMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118 (239)
T ss_pred -----------------CCcCCc--ccc-------ceEEEecCCcccC-CCCHHHHHhhhhhhccccccCCHHHHHHHHH
Confidence 222221 122 3999999987553 5799999987532211 1122234566
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +..+ .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 187 (239)
T cd03296 119 ELLKLVQLDWLA---DRYP--------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187 (239)
T ss_pred HHHHHcCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 778888874211 2233 6899999999999999999999999999999 9999999999999988642
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 188 ~tvii~sH~~~~~~~~~d~i 207 (239)
T cd03296 188 VTTVFVTHDQEEALEVADRV 207 (239)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 445666666666664
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=277.41 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=145.8
Q ss_pred CceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++||++.|+++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~- 72 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV-----LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQP- 72 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE-
Confidence 579999999999643 233 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
+...+....... ..+.++|++|++.+++ .+|+.+|+.+...... ......+++.
T Consensus 73 ---------------------i~~~~~~~~~~~---~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~ 127 (233)
T PRK11629 73 ---------------------MSKLSSAAKAEL---RNQKLGFIYQFHHLLP-DFTALENVAMPLLIGKKKPAEINSRAL 127 (233)
T ss_pred ---------------------cCcCCHHHHHHH---HhccEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 434443322110 0123999999986554 5799999987532211 1223345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++++.+++.... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 128 ~~l~~~gl~~~~---~~~~--------~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 128 EMLAAVGLEHRA---NHRP--------SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 (233)
T ss_pred HHHHHcCCchhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 888988874221 2223 6899999999999999999999999999999 999999999999998854
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=279.20 Aligned_cols=197 Identities=18% Similarity=0.257 Sum_probs=153.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 64 (242)
T cd03295 1 IEFENVTKRYGGGKKA-----VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGED------ 64 (242)
T ss_pred CEEEEEEEEeCCcceE-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeE------
Confidence 5789999999752234 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|+||++.+++ .+|+.+|+.+...... ......+++.++++.
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (242)
T cd03295 65 ----------------IREQDPVELRRK-------IGYVIQQIGLFP-HMTVEENIALVPKLLKWPKEKIRERADELLAL 120 (242)
T ss_pred ----------------cCcCChHHhhcc-------eEEEccCccccC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333444344444 999999987554 4799999987543222 112334567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++...... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 l~l~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii 191 (242)
T cd03295 121 VGLDPAEFA-DRYP--------HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF 191 (242)
T ss_pred cCCCcHHHH-hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 887420011 2222 6899999999999999999999999999999 9999999999999998653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 192 ~sH~~~~~~~~~d~i 206 (242)
T cd03295 192 VTHDIDEAFRLADRI 206 (242)
T ss_pred EecCHHHHHHhCCEE
Confidence 345666666666664
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=297.49 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=156.6
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 11 ~~~~L~l~~l~~~~~~~~-~-----l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~-- 77 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE-V-----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQD-- 77 (375)
T ss_pred CCceEEEEEEEEEECCeE-E-----EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE--
Confidence 345799999999997543 3 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~ 226 (317)
+...++. ++ .+||+||++.+|+ .+||++|++|+....... ....+++.+
T Consensus 78 --------------------i~~~~~~--~r-------~ig~vfQ~~~lfp-~ltv~eNi~~~l~~~~~~~~~~~~~~~~ 127 (375)
T PRK09452 78 --------------------ITHVPAE--NR-------HVNTVFQSYALFP-HMTVFENVAFGLRMQKTPAAEITPRVME 127 (375)
T ss_pred --------------------CCCCCHH--HC-------CEEEEecCcccCC-CCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 3333332 22 3999999987665 689999999875322222 233456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.. +.+.++ .+|||||+||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~--~~~~~p---------~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 196 (375)
T PRK09452 128 ALRMVQLEE--FAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196 (375)
T ss_pred HHHHcCCch--hhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 889888742 222344 6999999999999999999999999999999 9999999999999998654
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 197 tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 197 TFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 345555555556653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=308.88 Aligned_cols=214 Identities=12% Similarity=0.115 Sum_probs=172.0
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc--c----CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCC
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR--T----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G 103 (317)
+.+|.......|..+..++.+.+|+.+++..+++.. . ...+.|+++||+|+|++...+ |+|+||+|++|
T Consensus 275 ~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~-----l~~i~~~i~~G 349 (547)
T PRK10522 275 LRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFS-----VGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCCeE-----EecceEEEcCC
Confidence 446888888999999999999999999875432211 1 112369999999999754444 99999999999
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCK 183 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (317)
+.+||+||||||||||+++|+|+++ |++|+|++||++ +.+.+...++++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~----------------------~~~~~~~~~~~~---- 398 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKP----------------------VTAEQPEDYRKL---- 398 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE----------------------CCCCCHHHHhhh----
Confidence 9999999999999999999999999 999999999987 667787788877
Q ss_pred hhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 184 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 184 ~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
|+|++|++.+|+. |+++| . .....+++.++++.+++... ..+++. .+| ..||||||||
T Consensus 399 ---i~~v~q~~~lf~~--ti~~n---~------~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~G--~~LSgGq~qR 457 (547)
T PRK10522 399 ---FSAVFTDFHLFDQ--LLGPE---G------KPANPALVEKWLERLKMAHKLELEDGR-----ISN--LKLSKGQKKR 457 (547)
T ss_pred ---eEEEecChhHHHH--hhccc---c------CchHHHHHHHHHHHcCCchhhhccccC-----CCC--CCCCHHHHHH
Confidence 9999999988865 77777 1 11233456778888776311 111111 024 6899999999
Q ss_pred hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 263 TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++|||++++|+++||||||+ ||+.+++.+.+.+.+..
T Consensus 458 l~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 496 (547)
T PRK10522 458 LALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLL 496 (547)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999887654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=284.17 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=152.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 1 ml~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~--- 66 (271)
T PRK13638 1 MLATSDLWFRYQDE-PV-----LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLD--- 66 (271)
T ss_pred CeEEEEEEEEcCCc-cc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcc---
Confidence 58999999999754 34 999999999999999999999999999999999999 99999999998610
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
....+...+++. ++|++|++..+....++.+|+.+...... ......+++.++++
T Consensus 67 -----------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 122 (271)
T PRK13638 67 -----------------YSKRGLLALRQQ-------VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122 (271)
T ss_pred -----------------cccCCHHHHHhh-------eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 112222334444 99999997643334578899976432211 12222345667788
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 123 ~~~l~~~~---~~~~--------~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 191 (271)
T PRK13638 123 LVDAQHFR---HQPI--------QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII 191 (271)
T ss_pred HcCCHhHh---cCCc--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 88873221 2333 6999999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 192 vtH~~~~~~~~~d~i 206 (271)
T PRK13638 192 SSHDIDLIYEISDAV 206 (271)
T ss_pred EeCCHHHHHHhCCEE
Confidence 456677776777764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=285.07 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=151.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++...+ |+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ml~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 65 (274)
T PRK13644 1 MIRLENVSYSYPDGTPA-----LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGID----- 65 (274)
T ss_pred CEEEEEEEEEcCCCCce-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE-----
Confidence 58999999999643334 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+...+ ...+++. +||++|++.......|+.+|+.+...... ......+++.+++
T Consensus 66 -----------------~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 66 -----------------TGDFSKLQGIRKL-------VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRAL 121 (274)
T ss_pred -----------------CCccccHHHHHhh-------eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHH
Confidence 33332 2334444 99999997532334699999987543221 1122345567778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 122 ~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til 190 (274)
T PRK13644 122 AEIGLEKYR---HRSP--------KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIV 190 (274)
T ss_pred HHCCCHHHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888874221 2233 6899999999999999999999999999999 9999999999999987642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 191 ~~tH~~~~~~-~~d~v 205 (274)
T PRK13644 191 YITHNLEELH-DADRI 205 (274)
T ss_pred EEecCHHHHh-hCCEE
Confidence 445666654 36654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=290.18 Aligned_cols=217 Identities=15% Similarity=0.185 Sum_probs=153.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+|+|++.... ...+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.+..-
T Consensus 19 ~~~l~~~nl~~~y~~~~~~-~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQEN-ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIGD 92 (320)
T ss_pred CceEEEEeEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEccc
Confidence 4589999999999643100 0012999999999999999999999999999999999999 999999999976210
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
.+.-++ ++... ..........+++. |||++|++. +|. .|+.+|+.++..... ......+++.
T Consensus 93 ~~~~~~--~~~~~----~~~~~~~~~~~~~~-------ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 157 (320)
T PRK13631 93 KKNNHE--LITNP----YSKKIKNFKELRRR-------VSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAK 157 (320)
T ss_pred cccccc--ccccc----cccccchHHHHHhc-------EEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHH
Confidence 000000 00000 00000112233443 999999873 454 499999987643222 1223345667
Q ss_pred HHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.++++ ... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 158 ~~l~~~gL~~~~~---~~~~--------~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g 226 (320)
T PRK13631 158 FYLNKMGLDDSYL---ERSP--------FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN 226 (320)
T ss_pred HHHHHcCCChhHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC
Confidence 788888874 111 2222 6899999999999999999999999999999 9999999999999987542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 227 ~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 227 KTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 456666666667764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=277.64 Aligned_cols=195 Identities=17% Similarity=0.216 Sum_probs=151.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~------ 63 (232)
T cd03218 1 LRAENLSKRYGKR-KV-----VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQD------ 63 (232)
T ss_pred CeEEEEEEEeCCE-Ee-----eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEe------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a~~ 230 (317)
+...+.....+ ..++|++|++.+++ .+|+.+|+.+........ ....+++.++++.
T Consensus 64 ----------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (232)
T cd03218 64 ----------------ITKLPMHKRAR------LGIGYLPQEASIFR-KLTVEENILAVLEIRGLSKKEREEKLEELLEE 120 (232)
T ss_pred ----------------cccCCHhHHHh------ccEEEecCCccccc-cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33333322211 13999999987554 579999998754222111 2233456678888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+. .
T Consensus 121 ~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~ 189 (232)
T cd03218 121 FHITHLR---KSKA--------SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT 189 (232)
T ss_pred cCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 8874211 2333 6899999999999999999999999999999 9999999999999987642 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+.+.+|+|
T Consensus 190 sH~~~~~~~~~d~i 203 (232)
T cd03218 190 DHNVRETLSITDRA 203 (232)
T ss_pred eCCHHHHHHhCCEE
Confidence 45555666666653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=284.34 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=153.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 5 ~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--- 70 (269)
T PRK11831 5 ANLVDMRGVSFTRGNR-CI-----FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGEN--- 70 (269)
T ss_pred cceEEEeCeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE---
Confidence 4589999999999654 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CCChHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GDSDVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~ 226 (317)
+...+...... +.+.++|++|++.+++ .+|+.+|+.+..... ........++.+
T Consensus 71 -------------------i~~~~~~~~~~----~~~~i~~v~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (269)
T PRK11831 71 -------------------IPAMSRSRLYT----VRKRMSMLFQSGALFT-DMNVFDNVAYPLREHTQLPAPLLHSTVMM 126 (269)
T ss_pred -------------------ccccChhhHHH----HhhcEEEEecccccCC-CCCHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 33333222111 1123999999987654 579999998653211 111223345667
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~l~~~gl~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 195 (269)
T PRK11831 127 KLEAVGLRGAA---KLMP--------SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV 195 (269)
T ss_pred HHHHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence 78888874221 2233 6999999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 196 tiiivsH~~~~~~~~~d~v 214 (269)
T PRK11831 196 TCVVVSHDVPEVLSIADHA 214 (269)
T ss_pred EEEEEecCHHHHHHhhCEE
Confidence 346666666666664
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=308.48 Aligned_cols=213 Identities=10% Similarity=0.074 Sum_probs=175.6
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcc---cccc---cc----------CCCCceEEEeEEEEcCCC----Cccc
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQS---YDQL---RT----------RIGSLTDAKNKILSYTPG----AWIE 88 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~----------~~~~~I~~~nls~~y~~~----~~~~ 88 (317)
.+.+|.......|..+..++.+.+|+.++++. ++.. .. .....|+++||+|+|++. ..+
T Consensus 279 ~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~- 357 (555)
T TIGR01194 279 YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA- 357 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce-
Confidence 45678888889999999999999999999752 1111 10 012369999999999753 124
Q ss_pred cccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceee
Q 021147 89 NVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVI 168 (317)
Q Consensus 89 ~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~ 168 (317)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ +
T Consensus 358 ----l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~----------------------i 406 (555)
T TIGR01194 358 ----LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAA----------------------V 406 (555)
T ss_pred ----eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----------------------C
Confidence 999999999999999999999999999999999999 999999999987 6
Q ss_pred ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEE
Q 021147 169 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVV 246 (317)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i 246 (317)
+.++...+++. +++++|++.+|+. |+++|.. .....+++.++++.++++ ...+|+|+++.
T Consensus 407 ~~~~~~~~~~~-------i~~v~q~~~lf~~--ti~~n~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~- 468 (555)
T TIGR01194 407 SADSRDDYRDL-------FSAIFADFHLFDD--LIGPDEG--------EHASLDNAQQYLQRLEIADKVKIEDGGFSTT- 468 (555)
T ss_pred CCCCHHHHHhh-------CcEEccChhhhhh--hhhcccc--------cchhHHHHHHHHHHcCCchhhcccccccCCc-
Confidence 67777778777 9999999988865 7888741 122345578899999985 34567787761
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
..||||||||++||||++++|+++||||||+ ||+.+++.+.+.+.
T Consensus 469 ------~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~ 514 (555)
T TIGR01194 469 ------TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL 514 (555)
T ss_pred ------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999 99999999988654
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=279.02 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=153.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 66 (241)
T PRK14250 2 NEIEFKEVSYSSFGK-EI-----LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVD---- 66 (241)
T ss_pred ceEEEEeEEEEeCCe-ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----
Confidence 469999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+...... ....++.++++
T Consensus 67 ------------------i~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~~---~~~~~~~~~l~ 116 (241)
T PRK14250 67 ------------------IKTIDVIDLRRK-------IGMVFQQPHLFE--GTVKDNIEYGPMLKG---EKNVDVEYYLS 116 (241)
T ss_pred ------------------hhhcChHHhhhc-------EEEEecCchhch--hhHHHHHhcchhhcC---cHHHHHHHHHH
Confidence 333344444444 999999987765 599999986532211 12345677888
Q ss_pred HcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 230 TFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 230 ~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++++ ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 117 ~~~l~~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 117 IVGLNKEYA---TRDV--------KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred HcCCCHHHh---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 88874 111 2223 6899999999999999999999999999999 9999999999999987652
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 186 i~~sH~~~~~~~~~d~i 202 (241)
T PRK14250 186 IWITHNMEQAKRIGDYT 202 (241)
T ss_pred EEEeccHHHHHHhCCEE
Confidence 456677777777764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=291.75 Aligned_cols=209 Identities=13% Similarity=0.086 Sum_probs=160.4
Q ss_pred CCCceEEEeEEEEcCCCCc-------cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 68 IGSLTDAKNKILSYTPGAW-------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~-------~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
.+++|+++||++.|+.... ...+.+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~I~ 79 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVA 79 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcEEE
Confidence 3468999999999963110 001123999999999999999999999999999999999999 9999999
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC--CC
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME--GD 216 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~--~~ 216 (317)
++|++ +...+...++. +.+.|+|++|++. .++..+|+.+|+.+... +. ..
T Consensus 80 ~~G~~----------------------i~~~~~~~~~~----~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~ 133 (331)
T PRK15079 80 WLGKD----------------------LLGMKDDEWRA----VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLS 133 (331)
T ss_pred ECCEE----------------------CCcCCHHHHHH----HhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCC
Confidence 99986 44444333221 1234999999984 34557899999986432 11 12
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
.....+++.++++.++++.. ..+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++
T Consensus 134 ~~~~~~~~~~~l~~vgl~~~-~~~~~p---------~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l 203 (331)
T PRK15079 134 RQEVKDRVKAMMLKVGLLPN-LINRYP---------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203 (331)
T ss_pred HHHHHHHHHHHHHHcCCChH-HhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 22344566788899888321 122444 6999999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+..++|||
T Consensus 204 L~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 204 LQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 9998653 457788888888875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=285.15 Aligned_cols=194 Identities=15% Similarity=0.222 Sum_probs=152.9
Q ss_pred eEEEeEEEEcCCCC----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~~----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|+++. .+ |+||||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~-- 70 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA-----IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDIT-- 70 (286)
T ss_pred EEEEEEEEEECCCCccccCc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 89999999996432 23 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeecc----CChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCC-CChHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEG-DSDVE 220 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~-~~~~~ 220 (317)
+.. .+...+++. |||+||++. ++. .|+.+|+.++..... .....
T Consensus 71 --------------------i~~~~~~~~~~~~~~~-------ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~ 121 (286)
T PRK13646 71 --------------------ITHKTKDKYIRPVRKR-------IGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEV 121 (286)
T ss_pred --------------------CccccccchHHHHHhh-------eEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHH
Confidence 322 122344444 999999873 443 599999987643221 12233
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.+++. ... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.+++
T Consensus 122 ~~~~~~~l~~~gL~~~~~---~~~~--------~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 122 KNYAHRLLMDLGFSRDVM---SQSP--------FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHHHHHHHHcCCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 45567788888873 111 2233 6999999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 191 l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 191 LQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred HHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 8643 446677777777764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=273.40 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=150.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (210)
T cd03269 1 LEVENVTKRFGRV-TA-----LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKP------ 63 (210)
T ss_pred CEEEEEEEEECCE-EE-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCc------
Confidence 5789999999753 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~ 230 (317)
+.. ..++ .++|++|++.++. ..|+.+|+.+..... .......+++.++++.
T Consensus 64 ----------------~~~----~~~~-------~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 115 (210)
T cd03269 64 ----------------LDI----AARN-------RIGYLPEERGLYP-KMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115 (210)
T ss_pred ----------------hhH----HHHc-------cEEEeccCCcCCc-CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 211 2233 3999999987554 479999998754321 1122334567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 116 ~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~ 184 (210)
T cd03269 116 LELSEYA---NKRV--------EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184 (210)
T ss_pred cCChHHH---hCcH--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999987543 4
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+.+.+|++
T Consensus 185 sH~~~~~~~~~d~i 198 (210)
T cd03269 185 THQMELVEELCDRV 198 (210)
T ss_pred CCCHHHHHHhhhEE
Confidence 45666666666653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=274.65 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=153.0
Q ss_pred CceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++||+++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~- 73 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSI-----LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQP- 73 (228)
T ss_pred ceEEEeeeEEEccCCCcceEE-----EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEE-
Confidence 5799999999997531 23 999999999999999999999999999999999999 999999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
+...+...... .....++|++|++.++. .+|+.+|+.+...... ......+++.
T Consensus 74 ---------------------~~~~~~~~~~~---~~~~~i~~~~q~~~l~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~ 128 (228)
T PRK10584 74 ---------------------LHQMDEEARAK---LRAKHVGFVFQSFMLIP-TLNALENVELPALLRGESSRQSRNGAK 128 (228)
T ss_pred ---------------------cccCCHHHHHH---HHhheEEEEEcccccCC-CcCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33343322110 00123999999987554 5799999986532211 1223445677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... .... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~l~~~~l~~~~---~~~~--------~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 129 ALLEQLGLGKRL---DHLP--------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred HHHHHcCCHhHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 888888874221 2223 6899999999999999999999999999999 9999999999999988543
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|+...+.. +|++
T Consensus 198 ~tii~~sH~~~~~~~-~d~i 216 (228)
T PRK10584 198 TTLILVTHDLQLAAR-CDRR 216 (228)
T ss_pred CEEEEEecCHHHHHh-CCEE
Confidence 4456655543 5653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=283.85 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=154.4
Q ss_pred CceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++|+++||++.|++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~--- 70 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYA-----LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMV--- 70 (279)
T ss_pred ceEEEEEEEEEeCCCCccc-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEE---
Confidence 479999999999642 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+...+++. |||++|++..+....|+.+|+.++..... ......+++.++
T Consensus 71 -------------------i~~~~~~~~~~~-------i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 124 (279)
T PRK13635 71 -------------------LSEETVWDVRRQ-------VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124 (279)
T ss_pred -------------------CCcCcHHHHhhh-------eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHH
Confidence 434444444444 99999998423334699999987532221 222334567778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... .... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 l~~~gL~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~t 193 (279)
T PRK13635 125 LRQVGMEDFL---NREP--------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGIT 193 (279)
T ss_pred HHHcCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCE
Confidence 8888874221 2233 6899999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +||+
T Consensus 194 ilivsH~~~~~~~-~d~i 210 (279)
T PRK13635 194 VLSITHDLDEAAQ-ADRV 210 (279)
T ss_pred EEEEecCHHHHHc-CCEE
Confidence 3455666553 6653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=288.12 Aligned_cols=219 Identities=13% Similarity=0.184 Sum_probs=154.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++.... ...+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.+....
T Consensus 2 ~i~~~~l~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~~- 74 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPT-ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKNK- 74 (305)
T ss_pred EEEEEEEEEEECCCCCc-cccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceecccc-
Confidence 48999999999653210 0012999999999999999999999999999999999999 9999999998641000
Q ss_pred EecccCCCCcccccceeecc------CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRR------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQY 223 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~ 223 (317)
...- -..+....+.+.. .....+++. |||+||++.......||.+|+.++.... .......++
T Consensus 75 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~ 144 (305)
T PRK13651 75 --KKTK-EKEKVLEKLVIQKTRFKKIKKIKEIRRR-------VGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR 144 (305)
T ss_pred --cccc-cccccccccccccccccccchHHHHHhc-------eEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH
Confidence 0000 0000000000100 112233333 9999998632222459999998764322 222344566
Q ss_pred HHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+.++++.+++. ... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 145 ~~~~l~~~gL~~~~~---~~~~--------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 213 (305)
T PRK13651 145 AAKYIELVGLDESYL---QRSP--------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK 213 (305)
T ss_pred HHHHHHHcCCChhhh---hCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 78889999974 221 2333 6999999999999999999999999999999 999999999999998864
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 214 ~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 214 QGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred CCCEEEEEeeCHHHHHHhCCEE
Confidence 2 456677777777764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=271.69 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=162.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++.+++++|+.... |++||||++++||++||.|||||||||++|+|++|+. |++|+|++||-+
T Consensus 1 Ml~v~~l~K~y~~~v~-----AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d----- 65 (245)
T COG4555 1 MLEVTDLTKSYGSKVQ-----AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVD----- 65 (245)
T ss_pred CeeeeehhhhccCHHh-----hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecc-----
Confidence 6899999999986433 3999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~a~ 229 (317)
. ..++...|++ ||+++-+. -++..+|++||+.|.. .+.-......+++.++.+
T Consensus 66 -----------------~-~~~p~~vrr~-------IGVl~~e~-glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k 119 (245)
T COG4555 66 -----------------T-VRDPSFVRRK-------IGVLFGER-GLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119 (245)
T ss_pred -----------------c-ccChHHHhhh-------cceecCCc-ChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 2455667777 99998444 4666899999998754 333333445667778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH------h
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE------H 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~------~ 302 (317)
.+++.... +..+ ..+|-|+|||++|||||+++|+++|||||++ ||..+...+.+.+.++.. .
T Consensus 120 ~l~l~~~~---~rRv--------~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viF 188 (245)
T COG4555 120 RLQLLEYL---DRRV--------GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188 (245)
T ss_pred HhChHHHH---HHHH--------hhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEE
Confidence 88873222 2333 7999999999999999999999999999999 999999999999999865 3
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
+.|..+-++.+||||
T Consensus 189 SSH~m~EvealCDrv 203 (245)
T COG4555 189 SSHIMQEVEALCDRV 203 (245)
T ss_pred ecccHHHHHHhhheE
Confidence 788888999999986
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=273.61 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=150.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~------ 63 (213)
T cd03301 1 VELENVTKRFGNV-TA-----LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRD------ 63 (213)
T ss_pred CEEEeeEEEECCe-ee-----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5789999999764 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+.. ++. ++|++|++.++. ..|+.+|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~~~~~--~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (213)
T cd03301 64 ----------------VTDLPPK--DRD-------IAMVFQNYALYP-HMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117 (213)
T ss_pred ----------------CCcCCcc--cce-------EEEEecChhhcc-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2222221 123 999999987553 5799999987532221 122334456677888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 186 (213)
T cd03301 118 LQIEHLL---DRKP--------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIY 186 (213)
T ss_pred cCCHHHH---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999998653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 187 ~sH~~~~~~~~~d~i 201 (213)
T cd03301 187 VTHDQVEAMTMADRI 201 (213)
T ss_pred EeCCHHHHHHhcCeE
Confidence 346666666666653
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=290.78 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=160.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||++.|+.... .+.+|+||||+|++||++||+|+||||||||+++|+|+++|. ..|++|+|.++|++
T Consensus 1 m~~L~v~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~--- 74 (326)
T PRK11022 1 MALLNVDKLSVHFGDESA--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQD--- 74 (326)
T ss_pred CceEEEeCeEEEECCCCc--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEE---
Confidence 357999999999965321 011299999999999999999999999999999999999731 12489999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC-CCChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-GDSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-~~~~~~~~~~~ 225 (317)
+..++.+.+++. ..+.|+|+||++. .++..+++.+++..... .. .......+++.
T Consensus 75 -------------------i~~~~~~~~~~~---r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~ 132 (326)
T PRK11022 75 -------------------LQRISEKERRNL---VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAI 132 (326)
T ss_pred -------------------CCcCCHHHHHHH---hCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 444554444331 1124999999985 36667788877653221 11 12234456778
Q ss_pred HHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.++++. ....+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.+.|+++.+.
T Consensus 133 ~~L~~~gL~~~~~~l~~~p---------~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~ 203 (326)
T PRK11022 133 DLLNQVGIPDPASRLDVYP---------HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE 203 (326)
T ss_pred HHHHHCCCCChHHHHhCCc---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8899999842 11122344 6999999999999999999999999999999 9999999999999998653
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 204 g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 204 NMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 467788888888875
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=295.82 Aligned_cols=195 Identities=15% Similarity=0.122 Sum_probs=156.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|+++|++
T Consensus 17 ~~~l~l~~v~~~~~~~-~~-----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~--- 82 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ-HA-----VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVD--- 82 (377)
T ss_pred CceEEEEeEEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 4579999999999753 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...++ .++. |||+||++.+|+ .+||.+|++++..... ......+++.++
T Consensus 83 -------------------i~~~~~--~~r~-------ig~vfQ~~~lfp-~ltv~eNi~~~l~~~~~~~~~~~~~v~~~ 133 (377)
T PRK11607 83 -------------------LSHVPP--YQRP-------INMMFQSYALFP-HMTVEQNIAFGLKQDKLPKAEIASRVNEM 133 (377)
T ss_pred -------------------CCCCCH--HHCC-------EEEEeCCCccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333332 2333 999999998665 6899999998643222 223344567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.. +.+.++ .+|||||+||++|||||+.+|++++||||++ ||+.++..+.+.++++.+.
T Consensus 134 l~~l~L~~--~~~~~~---------~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 202 (377)
T PRK11607 134 LGLVHMQE--FAKRKP---------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVT 202 (377)
T ss_pred HHHcCCch--hhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 89888742 222344 6999999999999999999999999999999 9999999999988887653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 203 ii~vTHd~~ea~~laDri 220 (377)
T PRK11607 203 CVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 445666666666664
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=278.76 Aligned_cols=204 Identities=17% Similarity=0.172 Sum_probs=155.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|++|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 1 ~~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--- 71 (250)
T PRK14247 1 MNKIEIRDLKVSFGQV-EV-----LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD--- 71 (250)
T ss_pred CceEEEEeeEEEECCe-ee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE---
Confidence 3579999999999754 34 99999999999999999999999999999999999732112479999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~ 225 (317)
+...+...+++. |||++|++.++ ..+|+.+|+.+...... ......+++.
T Consensus 72 -------------------i~~~~~~~~~~~-------i~~v~q~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14247 72 -------------------IFKMDVIELRRR-------VQMVFQIPNPI-PNLSIFENVALGLKLNRLVKSKKELQERVR 124 (250)
T ss_pred -------------------CCcCCHHHHhcc-------EEEEeccCccC-CCCcHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 433444444444 99999998644 45799999987532211 1123345677
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE- 301 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~- 301 (317)
++++.+++... ... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 125 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (250)
T PRK14247 125 WALEKAQLWDEVKDRL-DAPA--------GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD 195 (250)
T ss_pred HHHHHcCCCcchhhhh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 88888887321 111 2223 6899999999999999999999999999999 999999999999998743
Q ss_pred ----hcCCCcchhhcccCCC
Q 021147 302 ----HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ----~~~~~~~~~~~~~~~~ 317 (317)
...|++..+...+|+|
T Consensus 196 ~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 196 MTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred CEEEEEeCCHHHHHHhcCEE
Confidence 1445666666666654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=274.02 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=149.6
Q ss_pred eEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++|+++.|++. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~i-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 67 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA-----LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEP--- 67 (220)
T ss_pred CeEEEEEEEcCCCCcceEE-----EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 5789999999752 234 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+.. .++ .++|++|++.++. ..|+.+|+.+...... ......+++.++
T Consensus 68 -------------------~~~-----~~~-------~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 115 (220)
T cd03293 68 -------------------VTG-----PGP-------DRGYVFQQDALLP-WLTVLDNVALGLELQGVPKAEARERAEEL 115 (220)
T ss_pred -------------------Ccc-----ccC-------cEEEEeccccccc-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 122 3999999987554 4799999987532211 112334567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 l~~~~l~~~~---~~~~--------~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 184 (220)
T cd03293 116 LELVGLSGFE---NAYP--------HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKT 184 (220)
T ss_pred HHHcCChhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 8888874211 2233 6899999999999999999999999999999 9999999999999987543
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 185 iii~sH~~~~~~~~~d~i 202 (220)
T cd03293 185 VLLVTHDIDEAVFLADRV 202 (220)
T ss_pred EEEEecCHHHHHHhCCEE
Confidence 345666666666653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=284.74 Aligned_cols=197 Identities=16% Similarity=0.190 Sum_probs=153.5
Q ss_pred ceEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
+|+++||++.|++. ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~- 70 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG-----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYH- 70 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE-
Confidence 58999999999742 233 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEK 221 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~ 221 (317)
+... +....++. +||++|++......+|+.+|+.+..... .......
T Consensus 71 ---------------------~~~~~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 122 (287)
T PRK13641 71 ---------------------ITPETGNKNLKKLRKK-------VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122 (287)
T ss_pred ---------------------CccccccchHHHHHhc-------eEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHH
Confidence 2211 12233333 9999998731122469999998754322 2222334
Q ss_pred HHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.+++. ... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 123 ~~~~~~l~~~gL~~~~~---~~~~--------~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 123 EKALKWLKKVGLSEDLI---SKSP--------FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HHHHHHHHHcCCChhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 5567888888873 222 3333 7999999999999999999999999999999 9999999999999998
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|+|
T Consensus 192 ~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 192 QKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEE
Confidence 542 557777777777764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=273.60 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=152.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ ++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~~i~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~--- 70 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA-KI-----LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGED--- 70 (225)
T ss_pred CceEEEeccEEeeCCc-ee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEE---
Confidence 3479999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+....... ....+++.+++
T Consensus 71 -------------------~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~enl~~~~~~~~~-~~~~~~~~~~l 121 (225)
T PRK10247 71 -------------------ISTLKPEIYRQQ-------VSYCAQTPTLFG--DTVYDNLIFPWQIRNQ-QPDPAIFLDDL 121 (225)
T ss_pred -------------------cCcCCHHHHHhc-------cEEEeccccccc--ccHHHHHHhHHhhcCC-ChHHHHHHHHH
Confidence 334444444444 999999987765 4999999864322111 12234566788
Q ss_pred HHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 229 TTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 229 ~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
+.+++. ... +... .+||+||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 122 ~~~~l~~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 190 (225)
T PRK10247 122 ERFALPDTIL---TKNI--------AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA 190 (225)
T ss_pred HHcCCChHHh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 888873 111 2333 6899999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+ +|++
T Consensus 191 vii~sh~~~~~~~-~d~i 207 (225)
T PRK10247 191 VLWVTHDKDEINH-ADKV 207 (225)
T ss_pred EEEEECChHHHHh-CCEE
Confidence 3355555543 6653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=275.99 Aligned_cols=193 Identities=18% Similarity=0.244 Sum_probs=151.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~----- 64 (236)
T TIGR03864 1 ALEVAGLSFAYGAR-RA-----LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHD----- 64 (236)
T ss_pred CEEEEeeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEE-----
Confidence 58999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+...+.. .++. ++|++|++.++ ..+|+.+|+.+...... ......+++.++++
T Consensus 65 -----------------i~~~~~~-~~~~-------i~~~~q~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 118 (236)
T TIGR03864 65 -----------------LRRAPRA-ALAR-------LGVVFQQPTLD-LDLSVRQNLRYHAALHGLSRAEARERIAALLA 118 (236)
T ss_pred -----------------cccCChh-hhhh-------EEEeCCCCCCc-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3333322 2223 99999998654 35799999986543221 11223445677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~gl~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 187 (236)
T TIGR03864 119 RLGLAERA---DDKV--------RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVL 187 (236)
T ss_pred HcCChhhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 88874221 2233 6899999999999999999999999999999 9999999999999998642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+ +|++
T Consensus 188 i~sH~~~~~~~-~d~i 202 (236)
T TIGR03864 188 WATHLVDEIEA-DDRL 202 (236)
T ss_pred EEecChhhHhh-CCEE
Confidence 4466666654 6653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=277.10 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=152.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|+++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 64 (240)
T PRK09493 1 MIEFKNVSKHFGPT-QV-----LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLK----- 64 (240)
T ss_pred CEEEEeEEEEECCe-EE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 58999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c-CCCChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M-EGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~-~~~~~~~~~~~~~ 226 (317)
+... +...+++. ++|++|++.++. .+|+.+|+.+... . ........+++.+
T Consensus 65 -----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (240)
T PRK09493 65 -----------------VNDPKVDERLIRQE-------AGMVFQQFYLFP-HLTALENVMFGPLRVRGASKEEAEKQARE 119 (240)
T ss_pred -----------------CCcCChhHHHHhhc-------eEEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHH
Confidence 3222 12233333 999999986553 5799999986531 1 1112223455677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 188 (240)
T PRK09493 120 LLAKVGLAERA---HHYP--------SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188 (240)
T ss_pred HHHHcCChHHH---hcCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 88888874221 2223 6899999999999999999999999999999 9999999999999988643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 189 iii~sH~~~~~~~~~d~i 206 (240)
T PRK09493 189 MVIVTHEIGFAEKVASRL 206 (240)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 456666666666663
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=282.12 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=153.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++...+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~----- 65 (275)
T PRK13639 1 ILETRDLKYSYPDGTEA-----LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEP----- 65 (275)
T ss_pred CEEEEEEEEEeCCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEE-----
Confidence 58999999999643334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+. ..+...+++. |+|++|++.......|+.+|+.+...... ......+++.++
T Consensus 66 -----------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~ 121 (275)
T PRK13639 66 -----------------IKYDKKSLLEVRKT-------VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA 121 (275)
T ss_pred -----------------CccccchHHHHHhh-------eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32 1122233444 99999997422224599999987543221 122334556778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... . .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 122 l~~~~L~~~--~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~ti 190 (275)
T PRK13639 122 LKAVGMEGF--E-NKPP--------HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITI 190 (275)
T ss_pred HHHCCCchh--h-cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 888887422 1 2333 7999999999999999999999999999999 9999999999999998642
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 191 l~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 191 IISTHDVDLVPVYADKV 207 (275)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 456677777777764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=287.03 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=155.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++++|++++|++. .+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~-~~-----l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~----- 65 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ-NA-----LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGED----- 65 (301)
T ss_pred EEEEEEEEEEECCE-EE-----EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 48999999999754 33 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+.. ....+++. +||+||++.++ ..+|+.+|+.+...... ......+++.++++
T Consensus 66 -----------------~~~-~~~~~~~~-------ig~~~q~~~l~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 119 (301)
T TIGR03522 66 -----------------VLQ-NPKEVQRN-------IGYLPEHNPLY-LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE 119 (301)
T ss_pred -----------------ccc-ChHHHHhc-------eEEecCCCCCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 322 22234444 99999998754 45799999987543222 11223455778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hc
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-----HA 303 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~ 303 (317)
.+++.... +..+ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+ .+
T Consensus 120 ~~gl~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~ 188 (301)
T TIGR03522 120 LVGLRPEQ---HKKI--------GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILS 188 (301)
T ss_pred HCCCchHh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 88874222 3333 7899999999999999999999999999999 999999999999999743 25
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|.+..+..+||||
T Consensus 189 sH~l~~~~~~~d~i 202 (301)
T TIGR03522 189 THIMQEVEAICDRV 202 (301)
T ss_pred cCCHHHHHHhCCEE
Confidence 66677777777774
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=281.87 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=153.0
Q ss_pred CCceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+|+++|+++.|++ ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~~l~~~nl~~~~~~~~~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~-- 72 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNA-----LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGIT-- 72 (271)
T ss_pred ceEEEEEeEEEEcCCCCccc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEe--
Confidence 358999999999963 3334 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+...+++. ++|++|++..+....|+++|+.+...... .......++.+
T Consensus 73 --------------------i~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (271)
T PRK13632 73 --------------------ISKENLKEIRKK-------IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD 125 (271)
T ss_pred --------------------cCcCCHHHHhcc-------eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHH
Confidence 433444445544 99999997423334799999987543221 12223345677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 194 (271)
T PRK13632 126 LAKKVGMEDYL---DKEP--------QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK 194 (271)
T ss_pred HHHHcCCHHHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 88888873211 2222 6899999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+. .+|+|
T Consensus 195 tiii~sH~~~~~~-~~d~v 212 (271)
T PRK13632 195 TLISITHDMDEAI-LADKV 212 (271)
T ss_pred EEEEEEechhHHh-hCCEE
Confidence 345555553 45553
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=293.50 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=155.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC--cEEEECcccCc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGD 147 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~--G~I~i~g~~~~ 147 (317)
+.|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~-- 70 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN-TV-----LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRD-- 70 (362)
T ss_pred eEEEEEEEEEEECCe-EE-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEE--
Confidence 358999999999754 33 999999999999999999999999999999999999 999 999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+. .++ .|||++|++.+| ..+||++|+.|+..... ......+++.+
T Consensus 71 --------------------~~~~~~--~~r-------~ig~vfQ~~~l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~ 120 (362)
T TIGR03258 71 --------------------LTHAPP--HKR-------GLALLFQNYALF-PHLKVEDNVAFGLRAQKMPKADIAERVAD 120 (362)
T ss_pred --------------------CCCCCH--HHC-------CEEEEECCcccC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333332 122 399999999866 46899999998653222 22334556788
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++... .+.++ .+|||||+||++|||||+.+|++++||||++ ||+.++..+.+.|+++.+.
T Consensus 121 ~l~~~gL~~~--~~~~~---------~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g 189 (362)
T TIGR03258 121 ALKLVGLGDA--AAHLP---------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189 (362)
T ss_pred HHHhcCCCch--hhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 8999998422 22333 6999999999999999999999999999999 9999999999999988654
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 190 ~til~vTHd~~ea~~l~dri 209 (362)
T TIGR03258 190 LTILCVTHDQDDALTLADKA 209 (362)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 335555555566654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=279.03 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=153.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++|++++|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (255)
T PRK11231 2 TLRTENLTVGYGTK-RI-----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKP----- 65 (255)
T ss_pred EEEEEeEEEEECCE-EE-----EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEE-----
Confidence 68999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-----cCCCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-----MEGDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-----~~~~~~~~~~~~~ 225 (317)
+...+...+++. ++|++|++.++ ...|+.+|+.++.. +........+++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~ 120 (255)
T PRK11231 66 -----------------ISMLSSRQLARR-------LALLPQHHLTP-EGITVRELVAYGRSPWLSLWGRLSAEDNARVN 120 (255)
T ss_pred -----------------hHHCCHHHHhhh-------eEEecccCCCC-CCccHHHHHHhccchhhhhccCCCHHHHHHHH
Confidence 333444444444 99999998655 35789999987521 1111223345567
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~ 189 (255)
T PRK11231 121 QAMEQTRINHLA---DRRL--------TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK 189 (255)
T ss_pred HHHHHcCCHHHH---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 788888874221 2223 6899999999999999999999999999999 9999999999999987542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 190 tiii~tH~~~~~~~~~d~i 208 (255)
T PRK11231 190 TVVTVLHDLNQASRYCDHL 208 (255)
T ss_pred EEEEEECCHHHHHHhcCEE
Confidence 446666666666653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=271.78 Aligned_cols=197 Identities=15% Similarity=0.189 Sum_probs=155.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+|++++||+..|+..+ + |++|||++++||+++|+|+||+|||||+|+|+|+.+ |.+|+|.++|++
T Consensus 2 ~mL~v~~l~~~YG~~~-~-----L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~d---- 66 (237)
T COG0410 2 PMLEVENLSAGYGKIQ-A-----LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGED---- 66 (237)
T ss_pred CceeEEeEeeccccee-E-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCee----
Confidence 5899999999998754 3 999999999999999999999999999999999999 999999999998
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+..+++...-+. .|+||||...+|+ .+||.||+.++.............+..+.+
T Consensus 67 ------------------it~~p~~~r~r~------Gi~~VPegR~iF~-~LTVeENL~~g~~~~~~~~~~~~~~e~v~~ 121 (237)
T COG0410 67 ------------------ITGLPPHERARL------GIAYVPEGRRIFP-RLTVEENLLLGAYARRDKEAQERDLEEVYE 121 (237)
T ss_pred ------------------cCCCCHHHHHhC------CeEeCcccccchh-hCcHHHHHhhhhhcccccccccccHHHHHH
Confidence 667766544332 4999999998776 699999998764322211111111333433
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+ |.+.-..+... ..|||||+|.++|||||+.+|++++||||+. |-|.-.+.|.+.|+++.+.
T Consensus 122 lF--P~Lker~~~~a--------G~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIl 191 (237)
T COG0410 122 LF--PRLKERRNQRA--------GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191 (237)
T ss_pred HC--hhHHHHhcCcc--------cCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 32 21111112222 6999999999999999999999999999999 9999999999999999864
Q ss_pred -cCCCcchhhcccCC
Q 021147 303 -ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -~~~~~~~~~~~~~~ 316 (317)
.+.|+..+.+++||
T Consensus 192 LVEQn~~~Al~iaDr 206 (237)
T COG0410 192 LVEQNARFALEIADR 206 (237)
T ss_pred EEeccHHHHHHhhCE
Confidence 45777777777776
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=278.65 Aligned_cols=195 Identities=16% Similarity=0.225 Sum_probs=154.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~----- 65 (258)
T PRK13548 2 MLEARNLSVRLGGR-TL-----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRP----- 65 (258)
T ss_pred eEEEEeEEEEeCCe-ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE-----
Confidence 68999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
+..++...+++. ++|++|++.++ ..+|+.+|+.+..... .......+++.++++
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 120 (258)
T PRK13548 66 -----------------LADWSPAELARR-------RAVLPQHSSLS-FPFTVEEVVAMGRAPHGLSRAEDDALVAAALA 120 (258)
T ss_pred -----------------cccCCHHHhhhh-------eEEEccCCcCC-CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHH
Confidence 333444444444 99999998653 3579999998753211 111223345677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec------cccceeeccCCCC-CCHHHHHHHHHHHHHHH-H
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG------IPPAKQIFDIPES-SDPENELIIVDMLRYCL-E 301 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~-~ 301 (317)
.+++.... +..+ .+|||||+||++||||++ .+|+++||||||+ ||+.++..+.+.|+++. +
T Consensus 121 ~~~l~~~~---~~~~--------~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (258)
T PRK13548 121 QVDLAHLA---GRDY--------PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189 (258)
T ss_pred HcCCHhHh---cCCc--------ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 88874211 2233 699999999999999999 5999999999999 99999999999999986 3
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|+|
T Consensus 190 ~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 190 RGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred cCCEEEEEECCHHHHHHhcCEE
Confidence 2 446677777777764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=275.48 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=153.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|+++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~i~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~---- 65 (242)
T TIGR03411 1 PILYLEGLSVSFDGF-KA-----LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTD---- 65 (242)
T ss_pred CeEEEEeeEEEcCCe-EE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCee----
Confidence 368999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------CCChHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------GDSDVE 220 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~~~~~~ 220 (317)
+...+.....+ ..++|++|++.+++ .+|+.+|+.+..... ......
T Consensus 66 ------------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~ 120 (242)
T TIGR03411 66 ------------------LTGLPEHQIAR------AGIGRKFQKPTVFE-NLTVFENLELALPRDKSVFASLFFRLSAEE 120 (242)
T ss_pred ------------------cCCCCHHHHHh------cCeeEeccccccCC-CCCHHHHHHHhhhcccccccccccccHHHH
Confidence 33333322211 13999999987664 579999998753211 001223
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... +..+ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 121 ~~~~~~~l~~~~l~~~~---~~~~--------~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 189 (242)
T TIGR03411 121 KDRIEEVLETIGLADEA---DRLA--------GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189 (242)
T ss_pred HHHHHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH
Confidence 45567788888874221 2233 6899999999999999999999999999999 9999999999999998
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.+.+|+|
T Consensus 190 ~~~~tii~~sH~~~~~~~~~d~i 212 (242)
T TIGR03411 190 AGKHSVVVVEHDMEFVRSIADKV 212 (242)
T ss_pred hcCCEEEEEECCHHHHHHhCCEE
Confidence 542 446666666777764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=276.46 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 66 (241)
T PRK10895 2 ATLTAKNLAKAYKGR-RV-----VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDED---- 66 (241)
T ss_pred ceEEEeCcEEEeCCE-EE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~ 226 (317)
+...+... .++. ++|++|++.++. .+|+.+|+.+...... .......++.+
T Consensus 67 ------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 120 (241)
T PRK10895 67 ------------------ISLLPLHARARRG-------IGYLPQEASIFR-RLSVYDNLMAVLQIRDDLSAEQREDRANE 120 (241)
T ss_pred ------------------CCCCCHHHHHHhC-------eEEeccCCcccc-cCcHHHHHhhhhhcccccCHHHHHHHHHH
Confidence 33333322 2333 999999987554 4799999986532111 11223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 189 (241)
T PRK10895 121 LMEEFHIEHLR---DSMG--------QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189 (241)
T ss_pred HHHHcCCHHHh---hcch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 78888763211 2233 6899999999999999999999999999999 9999999999999887542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|+|
T Consensus 190 iii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 190 VLITDHNVRETLAVCERA 207 (241)
T ss_pred EEEEEcCHHHHHHhcCEE
Confidence 345555555566653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=278.88 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=151.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 ml~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 64 (255)
T PRK11248 1 MLQISHLYADYGGK-PA-----LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKP----- 64 (255)
T ss_pred CEEEEEEEEEeCCe-ee-----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-----
Confidence 58999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~ 229 (317)
+.... .. +||++|++.++. ..|+.+|+.+...... ......+++.++++
T Consensus 65 -----------------~~~~~-----~~-------~~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 114 (255)
T PRK11248 65 -----------------VEGPG-----AE-------RGVVFQNEGLLP-WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114 (255)
T ss_pred -----------------CCCCC-----Cc-------EEEEeCCCccCC-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence 22111 12 899999986553 4799999986532211 11223456778888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... .... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~gl~~~~---~~~~--------~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvi 183 (255)
T PRK11248 115 KVGLEGAE---KRYI--------WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVL 183 (255)
T ss_pred HcCChhHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 88874221 2233 6899999999999999999999999999999 9999999999999997542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|+|
T Consensus 184 ivsH~~~~~~~~~d~i 199 (255)
T PRK11248 184 LITHDIEEAVFMATEL 199 (255)
T ss_pred EEeCCHHHHHHhCCEE
Confidence 456677777777764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=275.69 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=150.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~--- 68 (237)
T PRK11614 3 KVMLSFDKVSAHYGKI-QA-----LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKD--- 68 (237)
T ss_pred ccEEEEEeEEEeeCCc-ee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEe---
Confidence 4589999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+...+... .++. ++|++|++.+++ .+|+.+|+.+...... .....+++.++
T Consensus 69 -------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~-~~~~~~~~~~~ 120 (237)
T PRK11614 69 -------------------ITDWQTAKIMREA-------VAIVPEGRRVFS-RMTVEENLAMGGFFAE-RDQFQERIKWV 120 (237)
T ss_pred -------------------cCCCCHHHHHHhC-------EEEeccCcccCC-CCcHHHHHHHhhhccC-hhHHHHHHHHH
Confidence 33333322 2333 999999987664 5799999987542221 11222334455
Q ss_pred HHHc-CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 228 ATTF-NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 228 a~~~-~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
++.+ ++... .+. .. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 l~~~~~l~~~--~~~-~~--------~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (237)
T PRK11614 121 YELFPRLHER--RIQ-RA--------GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT 189 (237)
T ss_pred HHHHHHHHHH--HhC-ch--------hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 5555 23211 112 22 6899999999999999999999999999999 9999999999999987643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 190 iii~sH~~~~~~~~~d~i 207 (237)
T PRK11614 190 IFLVEQNANQALKLADRG 207 (237)
T ss_pred EEEEeCcHHHHHhhCCEE
Confidence 456666666667764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=279.80 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=153.5
Q ss_pred ceEEEeEEEEcCC--------CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC
Q 021147 71 LTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (317)
Q Consensus 71 ~I~~~nls~~y~~--------~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~ 142 (317)
+|+++||++.|+. ...+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 71 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV-----LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFR 71 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE-----eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEC
Confidence 6899999999963 2233 999999999999999999999999999999999999 999999999
Q ss_pred cccCceeeEecccCCCCcccccceeeccCChHH---HHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cCC-C
Q 021147 143 SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSS---LRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-MEG-D 216 (317)
Q Consensus 143 g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~~-~ 216 (317)
|++ +...+... +++ .|+|++|++. .+....|+.+|+.+... ... .
T Consensus 72 g~~----------------------i~~~~~~~~~~~~~-------~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 122 (265)
T TIGR02769 72 GQD----------------------LYQLDRKQRRAFRR-------DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122 (265)
T ss_pred CEE----------------------ccccCHHHHHHHhh-------ceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCC
Confidence 976 33333322 233 3999999974 35556799999975432 111 1
Q ss_pred ChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.....+++.++++.+++. ... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+
T Consensus 123 ~~~~~~~~~~~l~~~gl~~~~~---~~~~--------~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~ 191 (265)
T TIGR02769 123 ESEQKARIAELLDMVGLRSEDA---DKLP--------RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191 (265)
T ss_pred HHHHHHHHHHHHHHcCCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 123345577888888873 211 2233 6899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh-------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.|+++.+. ..|++..+...+|++
T Consensus 192 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHHhcEE
Confidence 99998653 456677776666663
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=279.40 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=155.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||++.|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 9 ~~~l~i~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 74 (265)
T PRK10575 9 DTTFALRNVSFRVPGR-TL-----LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQP--- 74 (265)
T ss_pred CceEEEeeEEEEECCE-EE-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEe---
Confidence 3579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C----CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G----DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~----~~~~~~~~ 223 (317)
+...+...+++. ++|++|++.++ ..+|+.+|+.+..... . ......++
T Consensus 75 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 127 (265)
T PRK10575 75 -------------------LESWSSKAFARK-------VAYLPQQLPAA-EGMTVRELVAIGRYPWHGALGRFGAADREK 127 (265)
T ss_pred -------------------hhhCCHHHHhhh-------eEEeccCCCCC-CCccHHHHHHhCcccccccccCCCHHHHHH
Confidence 333444444444 99999987654 3579999998642111 0 11223455
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++... . +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 128 ~~~~l~~~~l~~~--~-~~~~--------~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 196 (265)
T PRK10575 128 VEEAISLVGLKPL--A-HRLV--------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196 (265)
T ss_pred HHHHHHHcCCHHH--h-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 6778888887321 1 2223 6899999999999999999999999999999 9999999999999998643
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|+|
T Consensus 197 ~~~tiii~sH~~~~i~~~~d~i 218 (265)
T PRK10575 197 RGLTVIAVLHDINMAARYCDYL 218 (265)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE
Confidence 456677777777764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=274.78 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=151.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (242)
T PRK11124 2 SIQLNGINCFYGAH-QA-----LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDF-- 68 (242)
T ss_pred EEEEEeeEEEECCe-ee-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc--
Confidence 58999999999754 34 999999999999999999999999999999999999 999999999975100
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc-CCCChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM-EGDSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~-~~~~~~~~~~~~~~a 228 (317)
.. .........+++. ++|++|++.++. .+|+.+|+.+.. .. ........+++.+++
T Consensus 69 -------------~~-~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l 126 (242)
T PRK11124 69 -------------SK-TPSDKAIRELRRN-------VGMVFQQYNLWP-HLTVQQNLIEAPCRVLGLSKDQALARAEKLL 126 (242)
T ss_pred -------------cc-ccchhhHHHHHhh-------eEEEecCccccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00 0001112233333 999999987554 479999997432 11 111122344567788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.++++... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 195 (242)
T PRK11124 127 ERLRLKPYA---DRFP--------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQV 195 (242)
T ss_pred HHcCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 888874221 2223 6899999999999999999999999999999 9999999999999987542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+||+
T Consensus 196 ~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 196 IVTHEVEVARKTASRV 211 (242)
T ss_pred EEeCCHHHHHHhcCEE
Confidence 456666666666653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=286.86 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=159.9
Q ss_pred CCceEEEeEEEEcCCCCc----cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 69 GSLTDAKNKILSYTPGAW----IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~----~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.++|+++||++.|+.... ...+.+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~~g~ 77 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYYQGQ 77 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEECCE
Confidence 357999999999963110 000123999999999999999999999999999999999999 99999999998
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc-C-CCChHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM-E-GDSDVEK 221 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~-~-~~~~~~~ 221 (317)
+ +..++...++. +...|+|+||++. .++..+++.+++...... . .......
T Consensus 78 ~----------------------l~~~~~~~~~~----~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~ 131 (327)
T PRK11308 78 D----------------------LLKADPEAQKL----LRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR 131 (327)
T ss_pred E----------------------cCcCCHHHHHH----HhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH
Confidence 6 44444333221 1234999999984 466678999988643221 1 1223345
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++.++++.++++... .+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++|+++.
T Consensus 132 ~~~~~~l~~~gL~~~~-~~~~p---------~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 132 EKALAMMAKVGLRPEH-YDRYP---------HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHCCCChHH-hcCCC---------ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 6678889999984211 12344 6999999999999999999999999999999 99999999999999986
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 202 ~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 202 QELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEE
Confidence 54 567788888888875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=277.32 Aligned_cols=203 Identities=19% Similarity=0.208 Sum_probs=153.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|+++|....|++|+|+++|++
T Consensus 5 ~~~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 75 (254)
T PRK14273 5 EAIIETENLNLFYTDF-KA-----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN--- 75 (254)
T ss_pred CceEEEeeeEEEeCCc-ee-----ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe---
Confidence 4589999999999754 34 99999999999999999999999999999999999832212369999999975
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .+...+++. |+|++|++.++. .|+++|+.+...... ......+++
T Consensus 76 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 127 (254)
T PRK14273 76 -------------------IYSNNFDILELRRK-------IGMVFQTPNPFL--MSIYDNISYGPKIHGTKDKKKLDEIV 127 (254)
T ss_pred -------------------cccccccHHHHhhc-------eEEEeecccccc--CcHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 221 122334444 999999987763 799999987542211 112234556
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 128 ~~~l~~~~l~~~l~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (254)
T PRK14273 128 EQSLKKSALWNEVKDKL-NTNA--------LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198 (254)
T ss_pred HHHHHHhCCchhhHHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc
Confidence 67778877621 0111 2222 6899999999999999999999999999999 999999999999999853
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+||+
T Consensus 199 ~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 199 SYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 1 556666666677764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=286.91 Aligned_cols=207 Identities=15% Similarity=0.205 Sum_probs=158.1
Q ss_pred CCCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..++|+++|++++|.+. ..+ |+|+||+|++||++||+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~-----L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~- 150 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHV-----LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN- 150 (329)
T ss_pred cCceEEEEeeEEEecCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE-
Confidence 34689999999999643 233 99999999999999999999999999999999999732222679999999986
Q ss_pred ceeeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-C-ChHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-D-SDVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~-~~~~~~ 222 (317)
+. ..+...+++. ++|+||++.+|+ .|+++|+.++..+.. . .....+
T Consensus 151 ---------------------i~~~~~~~~~lr~~-------i~~v~q~~~~~~--~ti~eNi~~~~~~~~~~~~~~~~~ 200 (329)
T PRK14257 151 ---------------------TRSKKISSLELRTR-------IGMVFQKPTPFE--MSIFDNVAYGPRNNGINDRKILEK 200 (329)
T ss_pred ---------------------ccccccchHhhhcc-------EEEEecCCccCC--CcHHHHHHhHHHhcCCChHHHHHH
Confidence 32 2233344444 999999998775 599999997643221 1 111223
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+.++++.++++. +....+.+++ ..|||||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+
T Consensus 201 ~~~~~l~~~~L~~-----~l~~~~~~~~--~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~ 273 (329)
T PRK14257 201 IVEKSLKSAALWD-----EVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK 273 (329)
T ss_pred HHHHHHHHcCCcc-----hhhhhhhCCc--ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 3566777777531 1122334445 7999999999999999999999999999999 999999999999998764
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+.+.+|||
T Consensus 274 ~~Tii~iTH~l~~i~~~~Dri 294 (329)
T PRK14257 274 KYSIIIVTHSMAQAQRISDET 294 (329)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 3 456777777777775
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=275.90 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=153.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++|+...|++|+|+++|++
T Consensus 2 ~~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~--- 72 (253)
T PRK14267 2 KFAIETVNLRVYYGSN-HV-----IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRN--- 72 (253)
T ss_pred cceEEEEeEEEEeCCe-ee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE---
Confidence 3579999999999754 34 99999999999999999999999999999999999821111259999999986
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~ 223 (317)
+. ..+...+++. ++|++|++.++. .+|+.+|+.+...... ......++
T Consensus 73 -------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (253)
T PRK14267 73 -------------------IYSPDVDPIEVRRE-------VGMVFQYPNPFP-HLTIYDNVAIGVKLNGLVKSKKELDER 125 (253)
T ss_pred -------------------ccccccChHHHhhc-------eeEEecCCccCC-CCcHHHHHHHHHHhcCccCCHHHHHHH
Confidence 32 1223334444 999999987654 4799999987532111 11223345
Q ss_pred HHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++... ... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 126 ~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14267 126 VEWALKKAALWDEVKDRL-NDYP--------SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK 196 (253)
T ss_pred HHHHHHHcCCccchhhhh-ccCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 6677888776311 111 2222 7899999999999999999999999999999 99999999999999975
Q ss_pred Hh-----cCCCcchhhcccCCC
Q 021147 301 EH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-----~~~~~~~~~~~~~~~ 317 (317)
+. ..|+...+...+|||
T Consensus 197 ~~~tiii~sH~~~~~~~~~d~i 218 (253)
T PRK14267 197 KEYTIVLVTHSPAQAARVSDYV 218 (253)
T ss_pred hCCEEEEEECCHHHHHhhCCEE
Confidence 32 456666667777764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=278.51 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=153.4
Q ss_pred CCceEEEeEEEEcCCC--------CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 69 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~--------~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
.++|+++||+++|+.. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~ 71 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA-----VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELL 71 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce-----eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEE
Confidence 3579999999999631 223 999999999999999999999999999999999999 9999999
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccC--CCC
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSME--GDS 217 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~--~~~ 217 (317)
++|.+ +........++. ++|+||++. .+....|+.+|+.+..... ...
T Consensus 72 ~~g~~----------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 122 (267)
T PRK15112 72 IDDHP----------------------LHFGDYSYRSQR-------IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEP 122 (267)
T ss_pred ECCEE----------------------CCCCchhhHhcc-------EEEEecCchhhcCcchhHHHHHHHHHHhccCCCH
Confidence 99976 322222222233 999999875 2444568899987643211 111
Q ss_pred hHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 218 DVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
....+++.++++.+++. ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.
T Consensus 123 ~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 191 (267)
T PRK15112 123 EQREKQIIETLRQVGLLPDHA---SYYP--------HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191 (267)
T ss_pred HHHHHHHHHHHHHcCCChHHH---hcCc--------hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 22345567889998873 221 2233 6899999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+...+|+|
T Consensus 192 l~~~~~~~g~tviivsH~~~~~~~~~d~i 220 (267)
T PRK15112 192 MLELQEKQGISYIYVTQHLGMMKHISDQV 220 (267)
T ss_pred HHHHHHHcCcEEEEEeCCHHHHHHhcCEE
Confidence 9998643 456777777777764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=261.49 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=146.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||.+++|.|.|+.... ..+++|++||++||+||||||||||+++|+|+.. |.+|+|+++|++
T Consensus 1 ~l~L~~V~~~y~~~~~--------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d----- 62 (231)
T COG3840 1 MLALDDVRFSYGHLPM--------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVD----- 62 (231)
T ss_pred CccccceEEeeCcceE--------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCee-----
Confidence 5788999999965432 4899999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~ 229 (317)
....++.+ +- ++++||+..+|. .+||.+|+.++... -......++++..++.
T Consensus 63 -----------------~t~~~P~~--RP-------VSmlFQEnNLFa-HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~ 115 (231)
T COG3840 63 -----------------HTASPPAE--RP-------VSMLFQENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAA 115 (231)
T ss_pred -----------------cCcCCccc--CC-------hhhhhhccccch-hhhhhhhhcccCCcccccCHHHHHHHHHHHH
Confidence 33333322 11 888999988776 79999999987533 3344567888999999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+|+.- +.+..+ .+||||||||+++||+++++-++++||||+| |||.-+.....++.+++..
T Consensus 116 ~vGl~~--~~~RLP---------~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 116 QVGLAG--FLKRLP---------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred HhChhh--HhhhCc---------cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 999831 122344 4899999999999999999999999999999 9999999999999998754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=276.82 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=152.7
Q ss_pred CceEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++|+++|+++.|++.. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 6 ~~l~i~~l~~~~~~~~~~~-----l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~--- 72 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFT-----LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQA--- 72 (269)
T ss_pred ceEEEEEEEEEcCCCCCcc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE---
Confidence 4799999999997532 23 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~ 227 (317)
+...+...+++. ++|++|++..+....++.+|+.+....... .....+++.++
T Consensus 73 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
T PRK13648 73 -------------------ITDDNFEKLRKH-------IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126 (269)
T ss_pred -------------------CCcCCHHHHHhh-------eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHH
Confidence 434444455555 999999985223346889999775322111 12234456778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 l~~~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t 195 (269)
T PRK13648 127 LKQVDMLERA---DYEP--------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT 195 (269)
T ss_pred HHHcCCchhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 8888873211 1222 6899999999999999999999999999999 9999999999999987643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+...+.. +|||
T Consensus 196 iiivtH~~~~~~~-~d~i 212 (269)
T PRK13648 196 IISITHDLSEAME-ADHV 212 (269)
T ss_pred EEEEecCchHHhc-CCEE
Confidence 3355555554 6653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=279.10 Aligned_cols=195 Identities=14% Similarity=0.194 Sum_probs=151.3
Q ss_pred eEEEeEEEEcCCCC----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~~----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|++.. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~-- 70 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA-----LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTL-- 70 (280)
T ss_pred EEEEEEEEEcCCCCccccce-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE--
Confidence 89999999997531 23 999999999999999999999999999999999999 999999999976
Q ss_pred eeeEecccCCCCcccccceeecc----CChHHHHHHHHHhhhhcccccccc--ccccchhhHHHHHHhhhcc-CCCChHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCEPSVI--RKVNFVIFVVDGLAVLKSM-EGDSDVE 220 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~ig~v~Q~~--~~~~~~~tv~eni~~~~~~-~~~~~~~ 220 (317)
+.. .+...+++. |+|++|++ .++. .|+.+|+.+.... .......
T Consensus 71 --------------------i~~~~~~~~~~~~~~~-------i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~ 121 (280)
T PRK13649 71 --------------------ITSTSKNKDIKQIRKK-------VGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEA 121 (280)
T ss_pred --------------------ccccccccCHHHHHhh-------eEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHH
Confidence 222 123344444 99999987 3443 5999999875322 1112223
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... . .... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++
T Consensus 122 ~~~~~~~l~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (280)
T PRK13649 122 EALAREKLALVGISESL-F-EKNP--------FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191 (280)
T ss_pred HHHHHHHHHHcCCChhh-h-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 34566777888873111 1 2333 6899999999999999999999999999999 9999999999999988
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|+...+...+|++
T Consensus 192 ~~~~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 192 HQSGMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred HHCCCEEEEEeccHHHHHHhCCEE
Confidence 642 456666666667764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=269.82 Aligned_cols=198 Identities=19% Similarity=0.232 Sum_probs=160.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++.+.++|+.++|+... + +++|||++++||+++|.|||||||||.+.++.|+.+ |++|+|++||.+
T Consensus 2 ~~~L~a~~l~K~y~kr~-V-----v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~d--- 67 (243)
T COG1137 2 MSTLVAENLAKSYKKRK-V-----VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDED--- 67 (243)
T ss_pred CcEEEehhhhHhhCCee-e-----eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCcc---
Confidence 46799999999997664 4 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CCh--HHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSD--VEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~--~~~~~~~ 225 (317)
++.++.....+. .|||+||++..|- .+||.||+........ +.+ ..+.+..
T Consensus 68 -------------------iT~lPm~~RArl------GigYLpQE~SIFr-~LtV~dNi~~vlE~~~~d~~~~~~~~~l~ 121 (243)
T COG1137 68 -------------------ITKLPMHKRARL------GIGYLPQEASIFR-KLTVEDNIMAVLEIREKDLKKAERKEELD 121 (243)
T ss_pred -------------------cccCChHHHhhc------CcccccccchHhh-cCcHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence 556664332222 3999999998776 5999999976543322 223 2333466
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+.+.... +... .+||||||.|+.|||||+.+|+.++||||++ .||.+-..++++++.+...
T Consensus 122 ~LL~ef~i~hlr--~~~a---------~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgi 190 (243)
T COG1137 122 ALLEEFHITHLR--DSKA---------YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGI 190 (243)
T ss_pred HHHHHhchHHHh--cCcc---------cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCc
Confidence 888888873222 1222 6899999999999999999999999999999 9999999999999998754
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
.|||..---.+|||+
T Consensus 191 GvLITDHNVREtL~i~dRa 209 (243)
T COG1137 191 GVLITDHNVRETLDICDRA 209 (243)
T ss_pred eEEEccccHHHHHhhhheE
Confidence 678877777777763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=286.60 Aligned_cols=209 Identities=16% Similarity=0.147 Sum_probs=159.5
Q ss_pred CCceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++|+++||++.|+.. ..+ |+||||+|.+||+++|+|+||||||||+++|+|+++|. ..|++|+|+++|++
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~-----l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~ 74 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKA-----VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDID 74 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEE-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEE
Confidence 3579999999999531 223 99999999999999999999999999999999998631 12589999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhc---cCC----CC
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKS---MEG----DS 217 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~---~~~----~~ 217 (317)
+..++...++.. ..+.|+|+||++.. ++..+||.+++..... ... ..
T Consensus 75 ----------------------i~~~~~~~~~~~---~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~ 129 (330)
T PRK15093 75 ----------------------LLRLSPRERRKL---VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRF 129 (330)
T ss_pred ----------------------CCcCCHHHHHHH---hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccH
Confidence 444444433221 11249999999863 5667889999864311 111 11
Q ss_pred hHHHHHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 218 DVEKQYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
....+++.++++.++++.. ...+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++
T Consensus 130 ~~~~~~~~~~L~~~gL~~~~~~~~~~p---------~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l 200 (330)
T PRK15093 130 GWRKRRAIELLHRVGIKDHKDAMRSFP---------YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRL 200 (330)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCc---------hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 2334567788999998421 1122444 6999999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+..++|||
T Consensus 201 L~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 201 LTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 9998653 457888888888875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=279.45 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=153.0
Q ss_pred CceEEEeEEEEcCCC-----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 70 SLTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
+||+++||+++|++. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~ 72 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA-----LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGL 72 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE
Confidence 579999999999642 223 999999999999999999999999999999999999 99999999997
Q ss_pred cCceeeEecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQ 222 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~ 222 (317)
+ +.... ...+++. +||+||++..+....++.+|+.+...... ......+
T Consensus 73 ~----------------------i~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 123 (280)
T PRK13633 73 D----------------------TSDEENLWDIRNK-------AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123 (280)
T ss_pred e----------------------ccccccHHHHhhh-------eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH
Confidence 6 32221 2233444 99999997532223589999987542211 1223345
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 124 ~~~~~l~~~gL~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 124 RVDESLKKVGMYEYR---RHAP--------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHCCCHhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 677888888874221 2233 6999999999999999999999999999999 999999999999999864
Q ss_pred h-------cCCCcchhhcccCCC
Q 021147 302 H-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+.. +||+
T Consensus 193 ~~g~tillvtH~~~~~~~-~d~v 214 (280)
T PRK13633 193 KYGITIILITHYMEEAVE-ADRI 214 (280)
T ss_pred hcCCEEEEEecChHHHhc-CCEE
Confidence 3 4466666654 6664
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=279.35 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=154.1
Q ss_pred CceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC---cEEEECccc
Q 021147 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~---G~I~i~g~~ 145 (317)
.+|+++|+++.|++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~-----l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPA-----LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred ceEEEEEEEEEcCCCCccc-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 479999999999643 233 999999999999999999999999999999999999 877 899999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYN 224 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~ 224 (317)
+.......++++ +||++|++..+....|+.+|+.+....... .....+++
T Consensus 74 ----------------------~~~~~~~~~~~~-------ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (282)
T PRK13640 74 ----------------------LTAKTVWDIREK-------VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124 (282)
T ss_pred ----------------------CCcCCHHHHHhh-------eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHH
Confidence 333343444444 999999985333357999999875432222 22334567
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~~l~~~~L~~~~---~~~~--------~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ 193 (282)
T PRK13640 125 RDVLADVGMLDYI---DSEP--------ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193 (282)
T ss_pred HHHHHHCCChhHh---cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 7889998874221 2223 6999999999999999999999999999999 9999999999999988643
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+||+
T Consensus 194 g~tvli~tH~~~~~~-~~d~i 213 (282)
T PRK13640 194 NLTVISITHDIDEAN-MADQV 213 (282)
T ss_pred CCEEEEEecCHHHHH-hCCEE
Confidence 345666653 46653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=276.47 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=151.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~--- 75 (257)
T PRK11247 10 GTPLLLNAVSKRYGER-TV-----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAP--- 75 (257)
T ss_pred CCcEEEEEEEEEECCc-ce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE---
Confidence 3579999999999754 34 999999999999999999999999999999999999 999999998864
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+. .+++. ++|++|++.+++ ..|+.+|+.+... . ...+++.+++
T Consensus 76 -------------------~~-----~~~~~-------i~~v~q~~~l~~-~~tv~enl~~~~~--~---~~~~~~~~~l 118 (257)
T PRK11247 76 -------------------LA-----EARED-------TRLMFQDARLLP-WKKVIDNVGLGLK--G---QWRDAALQAL 118 (257)
T ss_pred -------------------HH-----HhhCc-------eEEEecCccCCC-CCcHHHHHHhccc--c---hHHHHHHHHH
Confidence 21 22333 999999987554 4799999986421 1 1234567788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~gl~~~~---~~~~--------~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 119 AAVGLADRA---NEWP--------AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred HHcCChhHh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 888874221 2233 6999999999999999999999999999999 9999999999999987543
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|+|
T Consensus 188 iivsHd~~~~~~~~d~i 204 (257)
T PRK11247 188 LLVTHDVSEAVAMADRV 204 (257)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 567777777777764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=275.48 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=155.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 3 ~~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH-EV-----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 4579999999999754 34 999999999999999999999999999999999999 999999999975110
Q ss_pred eeEecccCCCCccccccee-eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc-CCCChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM-EGDSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~-~~~~~~~~~~~~ 225 (317)
+... .+... ........+++ .++|+||++.++. .+|+++|+.++. .. ........+++.
T Consensus 72 --~~~~--------~~~~~~~~~~~~~~~~~-------~i~~v~q~~~l~~-~~sv~enl~~~~~~~~~~~~~~~~~~~~ 133 (257)
T PRK10619 72 --VRDK--------DGQLKVADKNQLRLLRT-------RLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQEARERAV 133 (257)
T ss_pred --cccc--------ccccccccchHHHHHhh-------ceEEEecCcccCC-CCcHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0000 00000 00001122333 3999999987665 479999997642 11 111223345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... . +... .+||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 134 ~~l~~~gl~~~~-~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ 203 (257)
T PRK10619 134 KYLAKVGIDERA-Q-GKYP--------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 203 (257)
T ss_pred HHHHHcCCChhh-h-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 888998874221 1 2223 6899999999999999999999999999999 9999999999999998643
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 204 tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 204 TMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred EEEEEeCCHHHHHHhcCEE
Confidence 456677777777764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=265.89 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=146.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++.. + |+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~i~~l~~~~~~~~-~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (201)
T cd03231 1 LEADELTCERDGRA-L-----FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGP------ 63 (201)
T ss_pred CEEEEEEEEeCCce-e-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEe------
Confidence 57899999997543 3 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... ..+++. ++|++|++.++ ...|+++|+.+..... ..+++.++++.+
T Consensus 64 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~-----~~~~~~~~l~~~ 113 (201)
T cd03231 64 ----------------LDFQR-DSIARG-------LLYLGHAPGIK-TTLSVLENLRFWHADH-----SDEQVEEALARV 113 (201)
T ss_pred ----------------ccccc-HHhhhh-------eEEeccccccC-CCcCHHHHHHhhcccc-----cHHHHHHHHHHc
Confidence 22111 233344 99999987644 3579999998753211 234567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
++.... ...+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 114 ~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~s 182 (201)
T cd03231 114 GLNGFE---DRPV--------AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182 (201)
T ss_pred CChhhh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 874221 2233 6899999999999999999999999999999 9999999999999987543 34
Q ss_pred CCcchhhcccCC
Q 021147 305 RNLSCKSCARNK 316 (317)
Q Consensus 305 ~~~~~~~~~~~~ 316 (317)
|+.....+++++
T Consensus 183 H~~~~~~~~~~~ 194 (201)
T cd03231 183 HQDLGLSEAGAR 194 (201)
T ss_pred cCchhhhhccce
Confidence 444444445544
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=270.09 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=152.6
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++|+++.|++. ..+ ++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~-----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~---- 67 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPA-----LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTD---- 67 (220)
T ss_pred eEEEEEEEEEcCCCCccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEE----
Confidence 38899999999653 233 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+..... . .+.+.++++
T Consensus 68 ------------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~---~--~~~~~~~l~ 115 (220)
T cd03245 68 ------------------IRQLDPADLRRN-------IGYVPQDVTLFY--GTLRDNITLGAPLA---D--DERILRAAE 115 (220)
T ss_pred ------------------hHHCCHHHHHhh-------EEEeCCCCcccc--chHHHHhhcCCCCC---C--HHHHHHHHH
Confidence 333343334444 999999997665 49999997643211 1 233556677
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+++. ...++.++.+.+.... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~--~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii 193 (220)
T cd03245 116 LAGVTDFVNKHPNGLDLQIGERG--RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLI 193 (220)
T ss_pred HcCcHHHHHhccccccceecCCC--ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77763 1223445555443333 6899999999999999999999999999999 9999999999999987542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+ ..+|+|
T Consensus 194 ~~sH~~~~~-~~~d~v 208 (220)
T cd03245 194 IITHRPSLL-DLVDRI 208 (220)
T ss_pred EEeCCHHHH-HhCCEE
Confidence 34555554 466653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=275.37 Aligned_cols=197 Identities=11% Similarity=0.169 Sum_probs=151.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~---- 68 (255)
T PRK11300 4 PLLSVSGLMMRFGGL-LA-----VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQH---- 68 (255)
T ss_pred ceEEEeeEEEEECCE-EE-----EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEE----
Confidence 479999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------------
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--------------- 214 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--------------- 214 (317)
+...+....++ ..++|++|++.+++ .+|+.+|+.++....
T Consensus 69 ------------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 123 (255)
T PRK11300 69 ------------------IEGLPGHQIAR------MGVVRTFQHVRLFR-EMTVIENLLVAQHQQLKTGLFSGLLKTPAF 123 (255)
T ss_pred ------------------CCCCCHHHHHh------cCeEEeccCcccCC-CCcHHHHHHHhhhccccchhhhhhcccccc
Confidence 33333322221 13889999987554 579999998753110
Q ss_pred C-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 215 G-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 215 ~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
. ......+++.++++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+
T Consensus 124 ~~~~~~~~~~~~~~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (255)
T PRK11300 124 RRAESEALDRAATWLERVGLLEHA---NRQA--------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192 (255)
T ss_pred ccchhHHHHHHHHHHHhCChhhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 0 0012224456677777763221 2333 6999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+.|.++.+. ..|++..+...+|+|
T Consensus 193 ~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 193 DELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999987543 345566666666653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=277.09 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=155.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 5 ~~~l~i~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~--- 70 (265)
T PRK10253 5 VARLRGEQLTLGYGKY-TV-----AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEH--- 70 (265)
T ss_pred ccEEEEEEEEEEECCE-EE-----eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEE---
Confidence 4579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc----CCCChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM----EGDSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~----~~~~~~~~~~ 223 (317)
+...+...++.. ++|+||++.++. .+|+.+|+.+.. .. ........++
T Consensus 71 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T PRK10253 71 -------------------IQHYASKEVARR-------IGLLAQNATTPG-DITVQELVARGRYPHQPLFTRWRKEDEEA 123 (265)
T ss_pred -------------------hhhCCHHHHhhh-------eEEeeccCcCCC-CCcHHHHHHhCcccccccccCCCHHHHHH
Confidence 434444444444 999999987554 579999998642 11 0111223445
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... .... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 124 ~~~~l~~~~l~~~~---~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~ 192 (265)
T PRK10253 124 VTKAMQATGITHLA---DQSV--------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192 (265)
T ss_pred HHHHHHHcCCHHHh---cCCc--------ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh
Confidence 67888888874211 2233 6999999999999999999999999999999 9999999999999998652
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 193 ~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 193 KGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE
Confidence 446666666667764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=267.04 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=147.8
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEec
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
++||++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~-------- 61 (206)
T TIGR03608 1 LKNISKKFGDK-II-----LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKE-------- 61 (206)
T ss_pred CcceEEEECCE-EE-----EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE--------
Confidence 47999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcC
Q 021147 154 EYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFN 232 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~ 232 (317)
+..+...... ....+.++|++|++.+++ ..|+.+|+.+...... ......+++.++++.++
T Consensus 62 --------------~~~~~~~~~~---~~~~~~i~~~~q~~~~~~-~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (206)
T TIGR03608 62 --------------TPPLNSKKAS---KFRREKLGYLFQNFALIE-NETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123 (206)
T ss_pred --------------ccccchhhHH---HHHHhCeeEEecchhhcc-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 2222211100 011224999999987554 5799999987543221 12233456778888888
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
+.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|
T Consensus 124 l~~~~---~~~~--------~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 124 LNLKL---KQKI--------YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred chhhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 74221 2233 6899999999999999999999999999999 9999999999999987642 345
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
+.... ..+|++
T Consensus 193 ~~~~~-~~~d~i 203 (206)
T TIGR03608 193 DPEVA-KQADRV 203 (206)
T ss_pred CHHHH-hhcCEE
Confidence 55544 345653
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=274.32 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=153.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+|+|+|++++....|++|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~---- 74 (253)
T PRK14242 5 PKMEARGLSFFYGDF-QA-----LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN---- 74 (253)
T ss_pred cEEEEeeeEEEECCe-ee-----ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE----
Confidence 579999999999754 34 99999999999999999999999999999999997411001579999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.++. .|+.+|+.+...... ......+++.
T Consensus 75 ------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 127 (253)
T PRK14242 75 ------------------IYDPHVDVVELRRR-------VGMVFQKPNPFP--KSIFENVAYGLRVNGVKDKAYLAERVE 127 (253)
T ss_pred ------------------ccccccCHHHHhhc-------EEEEecCCCCCc--CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 322 222334444 999999987775 499999987532211 1123345667
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 128 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (253)
T PRK14242 128 RSLRHAALWDEVKDRL-HESA--------LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198 (253)
T ss_pred HHHHHcCCchhhhHHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence 7788888631 1111 2222 6899999999999999999999999999999 9999999999999987431
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 199 ~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 199 YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred CeEEEEEecHHHHHHhCCEE
Confidence 556666666777764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=274.98 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=154.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~------ 64 (256)
T TIGR03873 2 LRLSRVSWSAGGR-LI-----VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVD------ 64 (256)
T ss_pred ceEEeEEEEECCE-EE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEE------
Confidence 6899999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c----CCCChHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M----EGDSDVEKQYNQI 226 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~----~~~~~~~~~~~~~ 226 (317)
+...+...+++. ++|++|++..+ ..+|+.+|+.+... . ........+++.+
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (256)
T TIGR03873 65 ----------------LHGLSRRARARR-------VALVEQDSDTA-VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120 (256)
T ss_pred ----------------cccCCHHHHhhh-------eEEecccCccC-CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHH
Confidence 444454444444 99999998533 35799999987531 1 1111223345677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (256)
T TIGR03873 121 ALARTELSHLA---DRDM--------STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189 (256)
T ss_pred HHHHcCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCE
Confidence 88888873211 2233 6899999999999999999999999999999 9999999999999998643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 190 iii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 190 VVAALHDLNLAASYCDHV 207 (256)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 456777777777764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=279.68 Aligned_cols=203 Identities=15% Similarity=0.172 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCC----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 70 SLTDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+.|+++||+++|++.. .+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA-----LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE
Confidence 4699999999997542 23 999999999999999999999999999999999999 999999999976
Q ss_pred CceeeEecccCCCCcccccceeeccC-ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQY 223 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~ 223 (317)
.. . ..... +...+++. |+|++|++.......|+.+|+.+........ ....++
T Consensus 75 i~-----------------~-~~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 129 (289)
T PRK13645 75 IP-----------------A-NLKKIKEVKRLRKE-------IGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK 129 (289)
T ss_pred cc-----------------c-cccccccHHHHhcc-------EEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH
Confidence 10 0 00011 22333434 9999998742222359999998754322111 222345
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.++++.. .. +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 130 ~~~ll~~~~L~~~-~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (289)
T PRK13645 130 VPELLKLVQLPED-YV-KRSP--------FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199 (289)
T ss_pred HHHHHHHcCCChh-Hh-cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 5677788776311 11 2333 6999999999999999999999999999999 9999999999999988643
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 200 ~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 200 YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred cCCEEEEEecCHHHHHHhCCEE
Confidence 446666666667764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=273.39 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=152.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|.. |++|+|.++|++
T Consensus 2 ~~~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~----- 68 (246)
T PRK14269 2 IAKTTNLNLFYGKK-QA-----LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKD----- 68 (246)
T ss_pred ceeeeeeEEEECCE-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEe-----
Confidence 58999999999753 34 999999999999999999999999999999999985210 689999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~ 227 (317)
+...+...+++. ++|+||++.+|+ .|+++|+.+...... .......++.++
T Consensus 69 -----------------i~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~ 122 (246)
T PRK14269 69 -----------------VKNQDVVALRKN-------VGMVFQQPNVFV--KSIYENISYAPKLHGMIKNKDEEEALVVDC 122 (246)
T ss_pred -----------------cccCCHHHHhhh-------EEEEecCCcccc--ccHHHHhhhHHhhcCcccChHHHHHHHHHH
Confidence 434444444444 999999998775 599999987532211 112234456778
Q ss_pred HHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.++++.. .+. +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 123 l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~t 193 (246)
T PRK14269 123 LQKVGLFEEVKDKL-KQNA--------LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193 (246)
T ss_pred HHHcCCChhhhHHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 888887311 111 1222 6899999999999999999999999999999 9999999999999987432
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+++.+...+|||
T Consensus 194 iii~tH~~~~~~~~~d~i 211 (246)
T PRK14269 194 MIMVTHNMQQGKRVADYT 211 (246)
T ss_pred EEEEecCHHHHHhhCcEE
Confidence 345555555666653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=276.89 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=154.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|++
T Consensus 11 ~~~l~i~nl~~~~~~~-~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~--- 81 (269)
T PRK14259 11 NIIISLQNVTISYGTF-EA-----VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD--- 81 (269)
T ss_pred CceEEEEeEEEEECCE-EE-----EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE---
Confidence 4589999999999754 33 99999999999999999999999999999999998732112489999999976
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+. ..+...+++. ++|+||++.++. .|+.+|+.+............+++.+
T Consensus 82 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 133 (269)
T PRK14259 82 -------------------LYDPRVDPVEVRRR-------IGMVFQQPNPFP--KSIYENIAFGARINGYTGDMDELVER 133 (269)
T ss_pred -------------------cccccCCHHHHhhc-------eEEEccCCccch--hhHHHHHhhhhhhcCCcHHHHHHHHH
Confidence 22 1233344444 999999987665 39999998754321111222345566
Q ss_pred HHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 134 ~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 204 (269)
T PRK14259 134 SLRKAAVWDECKDKL-NESG--------YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF 204 (269)
T ss_pred HHHHhCCcchhhhhh-CCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 777777521 1111 2222 6899999999999999999999999999999 9999999999999987532
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 205 tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 205 TIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred EEEEEeCCHHHHHHhcCEE
Confidence 556777777777764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=271.00 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=147.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (230)
T TIGR03410 1 LEVSNLNVYYGQS-HI-----LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGED------ 63 (230)
T ss_pred CEEEeEEEEeCCe-EE-----ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+... .++ .++|++|++.+++ .+|+.+|+.+........ ..+...++++.
T Consensus 64 ----------------~~~~~~~~~~~~-------~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~--~~~~~~~~l~~ 117 (230)
T TIGR03410 64 ----------------ITKLPPHERARA-------GIAYVPQGREIFP-RLTVEENLLTGLAALPRR--SRKIPDEIYEL 117 (230)
T ss_pred ----------------CCCCCHHHHHHh-------CeEEeccCCcccC-CCcHHHHHHHHHHhcCcc--hHHHHHHHHHH
Confidence 33333322 222 3999999987654 579999998754321111 12223455555
Q ss_pred cC-CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 231 FN-CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 231 ~~-l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
++ +.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 118 ~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 186 (230)
T TIGR03410 118 FPVLKEML---GRRG--------GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAIL 186 (230)
T ss_pred HHhHHHHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 54 22111 2233 7899999999999999999999999999999 9999999999999987642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 187 ~~sH~~~~~~~~~d~v 202 (230)
T TIGR03410 187 LVEQYLDFARELADRY 202 (230)
T ss_pred EEeCCHHHHHHhCCEE
Confidence 446666666667764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=276.57 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=155.4
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++||++.|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++|....|++|+|+++|++
T Consensus 16 ~~~~l~~~nl~~~~~~~-~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~-- 87 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK-QA-----LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED-- 87 (267)
T ss_pred CCceEEEEeEEEEECCE-EE-----EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE--
Confidence 35689999999999753 34 99999999999999999999999999999999999732112489999999976
Q ss_pred eeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQ 222 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~ 222 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+...... ......+
T Consensus 88 --------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~ 138 (267)
T PRK14235 88 --------------------IYDPRLDVVELRAR-------VGMVFQKPNPFP--KSIYENVAYGPRIHGLARSKAELDE 138 (267)
T ss_pred --------------------CcccccchHHHhhc-------eEEEecCCCCCC--CcHHHHHHHHHHhcccccchHHHHH
Confidence 321 223334444 999999988775 399999987542211 1122345
Q ss_pred HHHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.++++.+++... ... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 139 ~~~~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 139 IVETSLRKAGLWEEVKDRL-HEPG--------TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHHcCCchhhhHHh-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 56778888887321 011 2223 6899999999999999999999999999999 9999999999999987
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.+.+|++
T Consensus 210 ~~~~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 210 RQNYTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred hcCCeEEEEEcCHHHHHhhCCEE
Confidence 532 456666666667764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=280.02 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=150.9
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
.++|+++.|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 26 ~~~~~~~~~~~~~-i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~------- 87 (269)
T cd03294 26 SKEEILKKTGQTV-G-----VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQD------- 87 (269)
T ss_pred hhhhhhhhcCCce-E-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE-------
Confidence 5668888886543 3 999999999999999999999999999999999999 999999999976
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHc
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF 231 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~ 231 (317)
+...+...++.. ..+.++|++|++.+++ .+|+.+|+.+...... ......+++.++++.+
T Consensus 88 ---------------~~~~~~~~~~~~---~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (269)
T cd03294 88 ---------------IAAMSRKELREL---RRKKISMVFQSFALLP-HRTVLENVAFGLEVQGVPRAEREERAAEALELV 148 (269)
T ss_pred ---------------ccccChhhhhhh---hcCcEEEEecCcccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 333333222110 0124999999987553 5799999987532211 1223345577788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------c
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------A 303 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~ 303 (317)
++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+. .
T Consensus 149 ~l~~~~---~~~~--------~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~ 217 (269)
T cd03294 149 GLEGWE---HKYP--------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217 (269)
T ss_pred CCHhHh---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 874221 2233 6899999999999999999999999999999 9999999999999988642 4
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+...+|+|
T Consensus 218 tH~~~~~~~~~d~v 231 (269)
T cd03294 218 THDLDEALRLGDRI 231 (269)
T ss_pred eCCHHHHHHhcCEE
Confidence 46666666777764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=278.16 Aligned_cols=196 Identities=15% Similarity=0.193 Sum_probs=159.6
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++||+++|++. ..+ |+|+||+|++||+++|+|+||||||||+++|+|+++ + +|+|+++|.+
T Consensus 2 ~i~~~nls~~~~~~~~~~-----l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-----~-~G~I~i~g~~---- 66 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAV-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-----T-EGDIQIDGVS---- 66 (275)
T ss_pred eEEEEEEEEEeCCCCCcc-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-----C-CcEEEECCEE----
Confidence 48999999999642 333 999999999999999999999999999999999986 4 7999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|+||++.+|+ .|+++|+...... ..+++.++++
T Consensus 67 ------------------i~~~~~~~lr~~-------i~~v~q~~~lf~--~tv~~nl~~~~~~------~~~~~~~~l~ 113 (275)
T cd03289 67 ------------------WNSVPLQKWRKA-------FGVIPQKVFIFS--GTFRKNLDPYGKW------SDEEIWKVAE 113 (275)
T ss_pred ------------------hhhCCHHHHhhh-------EEEECCCcccch--hhHHHHhhhccCC------CHHHHHHHHH
Confidence 545566666666 999999998886 4999999632211 1245778888
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+++. ...++.++.+.+++.| ..||+||+||+++|||++.+|+++||||||+ ||+.++..+++.|+++...
T Consensus 114 ~~gL~~~~~~~p~~l~~~~~~~g--~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii 191 (275)
T cd03289 114 EVGLKSVIEQFPGQLDFVLVDGG--CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVI 191 (275)
T ss_pred HcCCHHHHHhCcccccceecCCC--CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88884 3346778888888888 8999999999999999999999999999999 9999999999999986421
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|||
T Consensus 192 ~isH~~~~i~~-~dri 206 (275)
T cd03289 192 LSEHRIEAMLE-CQRF 206 (275)
T ss_pred EEECCHHHHHh-CCEE
Confidence 2345555544 6653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=290.28 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=147.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++ +...+
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~----------------------i~~~~ 61 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGEN----------------------IMKQS 61 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEE----------------------CCcCC
Confidence 999999999999999999999999999999999999 999999999987 55555
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
...++.. ..+.+||++|++.+|+ .+||.+|+.+...... ......+++.++++.+++... .+.++
T Consensus 62 ~~~~~~~---rr~~i~~v~Q~~~l~~-~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~--~~~~p-------- 127 (363)
T TIGR01186 62 PVELREV---RRKKIGMVFQQFALFP-HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY--EHRYP-------- 127 (363)
T ss_pred HHHHHHH---HhCcEEEEECCCcCCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh--hhCCh--------
Confidence 5544210 0124999999998664 5899999998754322 223345667888999887422 22333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++|||||+.+|+++|||||++ ||+.++..+++.+.++.+. ..|++..+...+|||
T Consensus 128 -~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 128 -DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 6999999999999999999999999999999 9999999999999988543 456677677777764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=268.63 Aligned_cols=181 Identities=19% Similarity=0.199 Sum_probs=146.1
Q ss_pred ceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++|++++|++. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 67 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPV-----LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVD---- 67 (221)
T ss_pred cEEEEEEEEecCCCCccc-----ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEE----
Confidence 48999999999753 234 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+.... ..+++.++++
T Consensus 68 ------------------~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~enl~~~~~~------~~~~~~~~~~ 114 (221)
T cd03244 68 ------------------ISKIGLHDLRSR-------ISIIPQDPVLFS--GTIRSNLDPFGEY------SDEELWQALE 114 (221)
T ss_pred ------------------hHhCCHHHHhhh-------EEEECCCCcccc--chHHHHhCcCCCC------CHHHHHHHHH
Confidence 444455555555 999999998664 4999999754221 1234566677
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+++. ...++.++.+.+.... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 115 ~~~l~~~~~~l~~~l~~~~~~~~--~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 115 RVGLKEFVESLPGGLDTVVEEGG--ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HhCcHHHHHhcccccccccccCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 77763 2223445655544444 7999999999999999999999999999999 99999999999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=274.81 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=153.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++|+++.|++. .+ |+|+||+|++||++||+|+||||||||+++|+|+++|....|++|+|.++|++
T Consensus 10 ~~~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--- 80 (258)
T PRK14268 10 QPQIKVENLNLWYGEK-QA-----LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED--- 80 (258)
T ss_pred ceeEEEeeeEEEeCCe-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE---
Confidence 5689999999999754 34 99999999999999999999999999999999999721001379999999975
Q ss_pred eeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~ 225 (317)
+... +...+++. ++|++|++.++. .|+.+|+.+........ ....+++.
T Consensus 81 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 132 (258)
T PRK14268 81 -------------------IYEPDVDVVELRKN-------VGMVFQKPNPFP--MSIYDNVAYGPRIHGANKKDLDGVVE 132 (258)
T ss_pred -------------------cccccchHHHHhhh-------EEEEecCCccCc--ccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2221 12233333 999999987665 69999998753221111 22234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 133 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 203 (258)
T PRK14268 133 NALRSAALWDETSDRL-KSPA--------LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD 203 (258)
T ss_pred HHHHHcCCCcchhhhh-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhC
Confidence 7888887621 0111 2233 6999999999999999999999999999999 9999999999999987532
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 204 ~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 204 YTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred CEEEEEECCHHHHHHhCCEE
Confidence 556677777777764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=266.60 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=149.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++. ..|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~------ 61 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVD------ 61 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE------
Confidence 5799999999642 238999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|++|++.++. .+|+.+|+.+..... .......+++.++++.
T Consensus 62 ----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 115 (211)
T cd03298 62 ----------------VTAAPP--ADR-------PVSMLFQENNLFA-HLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR 115 (211)
T ss_pred ----------------cCcCCH--hHc-------cEEEEecccccCC-CCcHHHHHhcccccccCccHHHHHHHHHHHHH
Confidence 333322 122 3999999987554 579999998653211 1112334567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~l~~~~---~~~~--------~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 184 (211)
T cd03298 116 VGLAGLE---KRLP--------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184 (211)
T ss_pred cCCHHHH---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2223 6899999999999999999999999999999 9999999999999988642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+||+
T Consensus 185 ~sH~~~~~~~~~d~i 199 (211)
T cd03298 185 VTHQPEDAKRLAQRV 199 (211)
T ss_pred EecCHHHHHhhhCEE
Confidence 456666676777764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=273.39 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=150.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (252)
T TIGR03005 1 VRFSDVTKRFGIL-TV-----LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQ------ 63 (252)
T ss_pred CEEEEEEEEeCCe-eE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCC-------------hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCC
Q 021147 152 LQEYTIPRGVRHGELVIRRSD-------------SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGD 216 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~-------------~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~ 216 (317)
+..++ ...+++ .++|++|++.+++ ..|+.+|+.+.... ...
T Consensus 64 ----------------i~~~~~~~~~~~~~~~~~~~~~~~-------~i~~v~q~~~~~~-~~tv~~nl~~~~~~~~~~~ 119 (252)
T TIGR03005 64 ----------------LYHMPGRNGPLVPADEKHLRQMRN-------KIGMVFQSFNLFP-HKTVLDNVTEAPVLVLGMA 119 (252)
T ss_pred ----------------ccccccccccccccchhHHHHHhh-------CeEEEecCcccCC-CCcHHHHHHHHHHHhcCCC
Confidence 22221 112233 3999999986553 57999999874321 111
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
......++.++++.+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.
T Consensus 120 ~~~~~~~~~~~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 188 (252)
T TIGR03005 120 RAEAEKRAMELLDMVGLADKA---DHMP--------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188 (252)
T ss_pred HHHHHHHHHHHHHHcCChhHh---hcCh--------hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 222345567788888874221 1222 6899999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. ..|++..+...+||+
T Consensus 189 l~~~~~~~~~tiiivsH~~~~~~~~~d~i 217 (252)
T TIGR03005 189 IRRLASEHDLTMLLVTHEMGFAREFADRV 217 (252)
T ss_pred HHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 9988653 346666666666653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=273.02 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=144.8
Q ss_pred eEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++||+++|+.. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 65 (237)
T cd03252 1 ITFEHVRFRYKPDGPVI-----LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHD----- 65 (237)
T ss_pred CEEEEEEEecCCCCccc-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCee-----
Confidence 5789999999643 333 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|+||++.+++ .|+.+|+.+.... .. ...+...++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~nl~~~~~~--~~---~~~~~~~~~~ 114 (237)
T cd03252 66 -----------------LALADPAWLRRQ-------VGVVLQENVLFN--RSIRDNIALADPG--MS---MERVIEAAKL 114 (237)
T ss_pred -----------------hHhcCHHHHhhc-------EEEEcCCchhcc--chHHHHhhccCCC--CC---HHHHHHHHHH
Confidence 333444444444 999999987664 5999999864321 11 1123333444
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++. ...++.+....+..+. .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~~~~~l~~l~~~~~~~~~~~~--~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 192 (237)
T cd03252 115 AGAHDFISELPEGYDTIVGEQG--AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVII 192 (237)
T ss_pred cCcHHHHHhCcccccchhhcCC--CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4432 1112223222222222 6999999999999999999999999999999 9999999999999987431
Q ss_pred cCCCcchhhcccCC
Q 021147 303 ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (317)
..|++..+. .+|+
T Consensus 193 ~sH~~~~~~-~~d~ 205 (237)
T cd03252 193 IAHRLSTVK-NADR 205 (237)
T ss_pred EeCCHHHHH-hCCE
Confidence 345555553 3555
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=290.57 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=156.9
Q ss_pred CceEEEeEEEEcCCCCcc------------------ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCC
Q 021147 70 SLTDAKNKILSYTPGAWI------------------ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~------------------~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~ 131 (317)
.+|+++||++.|+..... ..+.+|+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--- 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--- 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---
Confidence 368888888888654210 00114999999999999999999999999999999999999
Q ss_pred CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh
Q 021147 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 211 (317)
Q Consensus 132 ~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~ 211 (317)
|++|+|+++|++ +...+...+++. ..+.+||++|++.+|+ .+|+.+|+.+..
T Consensus 80 --p~sG~I~i~G~~----------------------i~~~~~~~l~~~---~~~~igyv~Q~~~l~~-~~Tv~enl~~~~ 131 (400)
T PRK10070 80 --PTRGQVLIDGVD----------------------IAKISDAELREV---RRKKIAMVFQSFALMP-HMTVLDNTAFGM 131 (400)
T ss_pred --CCCCEEEECCEE----------------------CCcCCHHHHHHH---HhCCEEEEECCCcCCC-CCCHHHHHHHHH
Confidence 999999999986 444444333211 1124999999987654 579999998764
Q ss_pred ccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 212 SMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 212 ~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
.... ......+++.++++.+++... .+.++ .+|||||+||++|||||+.+|+++||||||+ ||+.++
T Consensus 132 ~~~~~~~~~~~~~~~e~L~~~gL~~~--~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 132 ELAGINAEERREKALDALRQVGLENY--AHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCChh--hhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 3221 223334567788899887422 12333 6999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 290 LIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 290 ~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
..+.+.|.++.+. ..|++..+...+|||
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 9999999988543 456666666667764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=271.23 Aligned_cols=197 Identities=16% Similarity=0.229 Sum_probs=164.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+++++++|+++|++-.. ++||||++++||+++||||||||||||+++|+|+|+ |++|+|.++|++
T Consensus 3 ~lL~v~~l~k~FGGl~A------l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~---- 67 (250)
T COG0411 3 PLLEVRGLSKRFGGLTA------VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRD---- 67 (250)
T ss_pred ceeeeccceeecCCEEE------EeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcc----
Confidence 57899999999986543 999999999999999999999999999999999999 999999999997
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-------------CCC
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-------------EGD 216 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-------------~~~ 216 (317)
+..+++..+.+. .|+-.||.+.+|. .+||.||+..+... ...
T Consensus 68 ------------------it~l~p~~iar~------Gi~RTFQ~~rlF~-~lTVlENv~va~~~~~~~~~~l~~~~~~~~ 122 (250)
T COG0411 68 ------------------ITGLPPHRIARL------GIARTFQITRLFP-GLTVLENVAVGAHARLGLSGLLGRPRARKE 122 (250)
T ss_pred ------------------cCCCCHHHHHhc------cceeecccccccC-CCcHHHHHHHHhhhhhhhhhhhccccchhh
Confidence 777777654432 2555699998776 69999999876321 113
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
.+..+++..++++.+++.... +... .+||+||++|+.|||||+.+|++++||||.+ |.+.....+.+.
T Consensus 123 e~~~~e~A~~~Le~vgL~~~a---~~~A--------~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~ 191 (250)
T COG0411 123 EREARERARELLEFVGLGELA---DRPA--------GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191 (250)
T ss_pred HHHHHHHHHHHHHHcCCchhh---cchh--------hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHH
Confidence 455677788889999985333 3333 7899999999999999999999999999999 999999999999
Q ss_pred HHHHHHh-------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|+++.+. -+|+...+-.+||||
T Consensus 192 i~~i~~~~g~tillIEHdM~~Vm~l~dri 220 (250)
T COG0411 192 IRELRDRGGVTILLIEHDMKLVMGLADRI 220 (250)
T ss_pred HHHHHhcCCcEEEEEEeccHHHhhhccEE
Confidence 9999764 467888888888885
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=278.36 Aligned_cols=211 Identities=19% Similarity=0.218 Sum_probs=166.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.++++||+..|..... .+.+++||||+|++||++||||+||||||||.++|+|+++++.....+|+|.++|++
T Consensus 1 lL~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~----- 73 (316)
T COG0444 1 LLEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD----- 73 (316)
T ss_pred CceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc-----
Confidence 4789999999965432 123499999999999999999999999999999999999743233478999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC-C-CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-G-DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-~-~~~~~~~~~~~ 226 (317)
+..++.+.+++. .-+.|+++||+|. -+++.++|.+.+.-.-. .. . ...+..+++.+
T Consensus 74 -----------------l~~l~~~~~~~i---RG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~ 133 (316)
T COG0444 74 -----------------LLSLSEKELRKI---RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIE 133 (316)
T ss_pred -----------------cccCCHHHHHhh---cCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 444554433221 1234999999975 67788888887753222 11 1 23456778899
Q ss_pred HHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 227 VATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 227 ~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
+++.++++.. ..-+.|+ .+|||||+||+.||.|++.+|+++|.||||+ ||..++..+.++|+++.+.
T Consensus 134 ~L~~Vgi~~~~~~~~~YP---------helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~ 204 (316)
T COG0444 134 LLELVGIPDPERRLKSYP---------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKG 204 (316)
T ss_pred HHHHcCCCCHHHHHhhCC---------cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 9999999632 2334788 4999999999999999999999999999999 9999999999999999863
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
-.|++..++.++|||
T Consensus 205 ~aiilITHDl~vva~~aDri 224 (316)
T COG0444 205 TALILITHDLGVVAEIADRV 224 (316)
T ss_pred CEEEEEeCCHHHHHHhcceE
Confidence 467899999999986
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=274.21 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=153.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|+. +++|+|+++|.+
T Consensus 3 ~~l~~~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--~~~G~i~~~g~~---- 70 (262)
T PRK09984 3 TIIRVEKLAKTFNQH-QA-----LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK--SAGSHIELLGRT---- 70 (262)
T ss_pred cEEEEeeEEEEeCCe-EE-----EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC--CCceEEEECCEe----
Confidence 479999999999754 34 999999999999999999999999999999999998220 135999999975
Q ss_pred eEecccCCCCcccccceeeccC-----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---------C
Q 021147 150 YFLQEYTIPRGVRHGELVIRRS-----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---------G 215 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~-----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---------~ 215 (317)
+... +...+++. ++|+||++.+++ .+|+.+|+.+..... .
T Consensus 71 ------------------~~~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~ 124 (262)
T PRK09984 71 ------------------VQREGRLARDIRKSRAN-------TGYIFQQFNLVN-RLSVLENVLIGALGSTPFWRTCFSW 124 (262)
T ss_pred ------------------cccccccchhHHHHHhh-------eEEEcccccccc-CCcHHHHHHhhhcccccchhhhccc
Confidence 2211 12233333 999999987654 579999998653210 0
Q ss_pred CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 216 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 216 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.......++.++++.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.+...+.+
T Consensus 125 ~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 193 (262)
T PRK09984 125 FTREQKQRALQALTRVGMVHFA---HQRV--------STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193 (262)
T ss_pred ccHHHHHHHHHHHHHcCCHHHH---hCCc--------cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHH
Confidence 1122345677888888874221 2333 6899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh-------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.|+++.+. ..|++..+...+||+
T Consensus 194 ~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 194 TLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99998653 456777777777764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=281.74 Aligned_cols=178 Identities=17% Similarity=0.257 Sum_probs=144.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+ +.. .
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----------------------~~~-~ 60 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYD----------------------VVR-E 60 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE----------------------ccc-C
Confidence 999999999999999999999999999999999999 999999999976 322 2
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
...+++. +||+||++.++ ..+|+.+|+.+...... ......+++.++++.+++.... +..+
T Consensus 61 ~~~~~~~-------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~------- 122 (302)
T TIGR01188 61 PRKVRRS-------IGIVPQYASVD-EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA---DRPV------- 122 (302)
T ss_pred HHHHHhh-------cEEecCCCCCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh---CCch-------
Confidence 2334444 99999998755 46899999987543222 2223345677889998874222 3333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|++..+...||||
T Consensus 123 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 123 -GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 7899999999999999999999999999999 9999999999999998642 567777788888875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=271.16 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=140.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++|++++|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 66 (229)
T cd03254 2 EIEFENVNFSYDEKKPV-----LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGID----- 66 (229)
T ss_pred eEEEEEEEEecCCCCcc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEe-----
Confidence 48999999999743334 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+..... . ..++.++++.
T Consensus 67 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~~~~~~~~~~--~---~~~~~~~~~~ 115 (229)
T cd03254 67 -----------------IRDISRKSLRSM-------IGVVLQDTFLFS--GTIMENIRLGRPNA--T---DEEVIEAAKE 115 (229)
T ss_pred -----------------HHHcCHHHHhhh-------EEEecCCchhhh--hHHHHHHhccCCCC--C---HHHHHHHHHH
Confidence 433444445554 999999987665 39999998653211 1 1234444555
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++. ...++.+....+.... .+||+||+||++||||++.+|+++||||||+ ||+.+++.+.+.++++.
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~--~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 116 AGAHDFIMKLPNGYDTVLGENG--GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred hChHHHHHhCcccccCHhhcCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 4442 1112223332222222 6899999999999999999999999999999 99999999999999874
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=284.52 Aligned_cols=209 Identities=17% Similarity=0.150 Sum_probs=159.6
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc---CcEEEECcc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSS 144 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~---~G~I~i~g~ 144 (317)
.+++|+++||++.|+.... .+.+|+||||+|++||++||+|+||||||||+++|+|+++ |. +|+|.++|+
T Consensus 9 ~~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G~ 81 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNGR 81 (330)
T ss_pred CCceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECCE
Confidence 3468999999999953210 0112999999999999999999999999999999999998 64 999999998
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC-CCChHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-GDSDVEK 221 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-~~~~~~~ 221 (317)
+ +..++...+++. ..+.|+|+||++. .++..+|+.+|+..... .. .......
T Consensus 82 ~----------------------i~~~~~~~~~~~---r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~ 136 (330)
T PRK09473 82 E----------------------ILNLPEKELNKL---RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAF 136 (330)
T ss_pred E----------------------CCcCCHHHHHHH---hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH
Confidence 7 445554444321 1124999999984 45667888888864321 11 1222334
Q ss_pred HHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.++++.. ...+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+.++|+++
T Consensus 137 ~~~~~~L~~vgL~~~~~~~~~~p---------~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 137 EESVRMLDAVKMPEARKRMKMYP---------HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHHcCCCChHHHhcCCc---------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 567778888887421 1112344 6999999999999999999999999999999 9999999999999998
Q ss_pred HHh-------cCCCcchhhcccCCC
Q 021147 300 LEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+..++|||
T Consensus 208 ~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 208 KREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEE
Confidence 764 567788888788875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=264.57 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=142.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|++++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~----- 64 (204)
T PRK13538 1 MLEARNLACERDER-IL-----FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEP----- 64 (204)
T ss_pred CeEEEEEEEEECCE-EE-----EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-----
Confidence 58999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.... ..+++. ++|++|++.++ ..+|+.+|+.+....... ...+++.++++.
T Consensus 65 -----------------~~~~~-~~~~~~-------~~~~~~~~~~~-~~~tv~e~l~~~~~~~~~--~~~~~~~~~l~~ 116 (204)
T PRK13538 65 -----------------IRRQR-DEYHQD-------LLYLGHQPGIK-TELTALENLRFYQRLHGP--GDDEALWEALAQ 116 (204)
T ss_pred -----------------cccch-HHhhhh-------eEEeCCccccC-cCCcHHHHHHHHHHhcCc--cHHHHHHHHHHH
Confidence 22221 223333 99999987644 457999999876432211 234557788999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+++.... ...+ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 117 ~gl~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 117 VGLAGFE---DVPV--------RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred cCCHHHh---hCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 8874221 2333 6899999999999999999999999999999 999999999999998753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=267.21 Aligned_cols=205 Identities=12% Similarity=0.170 Sum_probs=151.7
Q ss_pred ceEEEeEEEEcCCC------CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 71 LTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 71 ~I~~~nls~~y~~~------~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
||+++||+++|+.. ..+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~ 70 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV-----LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHE 70 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE-----EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecC
Confidence 58999999999631 233 999999999999999999999999999999999999 99999999842
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQY 223 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~ 223 (317)
... ..+..++...... .....++|++|++.++ ..+|+.+|+.+... .........++
T Consensus 71 g~~------------------~~~~~~~~~~~~~---~~~~~i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~ 128 (224)
T TIGR02324 71 GAW------------------VDLAQASPREVLE---VRRKTIGYVSQFLRVI-PRVSALEVVAEPLLERGVPREAARAR 128 (224)
T ss_pred CCc------------------cchhhcCHHHHHH---HHhcceEEEecccccC-CCccHHHHHHHHHHHcCCCHHHHHHH
Confidence 100 0022233222111 0112399999998754 46799999976322 11111233455
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... . .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~~~l~~~~l~~~~-~-~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 129 ARELLARLNIPERL-W-HLPP--------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred HHHHHHHcCCchhh-h-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 67788888874211 1 2233 6899999999999999999999999999999 9999999999999997543
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+++||+
T Consensus 199 g~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 199 GAALIGIFHDEEVRELVADRV 219 (224)
T ss_pred CCEEEEEeCCHHHHHHhccee
Confidence 456677777777875
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=276.70 Aligned_cols=196 Identities=17% Similarity=0.233 Sum_probs=151.9
Q ss_pred ceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 71 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 71 ~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+|+++||+++|++.. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~-----l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 70 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ-----LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGEL--- 70 (277)
T ss_pred eEEEEEEEEEcCCCCcCee-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEE---
Confidence 799999999997432 23 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+...+++. +||++|++..+....|+.+|+.++..... ......+++.++
T Consensus 71 -------------------i~~~~~~~~~~~-------i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~ 124 (277)
T PRK13642 71 -------------------LTAENVWNLRRK-------IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124 (277)
T ss_pred -------------------CCcCCHHHHhcc-------eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHH
Confidence 333333344444 99999997533334699999986532211 122233556778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +..+ .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 l~~~~l~~~~---~~~~--------~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 193 (277)
T PRK13642 125 LLAVNMLDFK---TREP--------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT 193 (277)
T ss_pred HHHCCCHhHh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 8888874221 2333 6899999999999999999999999999999 9999999999999988653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|+|
T Consensus 194 iil~sH~~~~~~-~~d~i 210 (277)
T PRK13642 194 VLSITHDLDEAA-SSDRI 210 (277)
T ss_pred EEEEeCCHHHHH-hCCEE
Confidence 345555554 35553
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=295.12 Aligned_cols=258 Identities=19% Similarity=0.227 Sum_probs=192.3
Q ss_pred ccccCcccccccccccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------------CCCCceEEEeEEEEcCC
Q 021147 16 EEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------------RIGSLTDAKNKILSYTP 83 (317)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~I~~~nls~~y~~ 83 (317)
-+++..+-|.-+.|-.|..-.....-+-+.+.+.-+.+ .+++..|.... ...++++++||++.|..
T Consensus 215 l~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~--~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~ 292 (539)
T COG1123 215 LGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTR--GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGS 292 (539)
T ss_pred HHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccH--HHHhhCCCcccccccccccccccccCceeEeeeeeeeecc
Confidence 34556667777778787777666665555544433332 23332222111 14578999999999974
Q ss_pred CC-----ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCC
Q 021147 84 GA-----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 158 (317)
Q Consensus 84 ~~-----~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~ 158 (317)
.. ....+.|++||||+|.+||++||||+||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 293 ~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i~~~g~~~~----------- 356 (539)
T COG1123 293 RKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSIIFDGQDLD----------- 356 (539)
T ss_pred ccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEEeCcccc-----------
Confidence 21 1123567999999999999999999999999999999999999 99999999997511
Q ss_pred CcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCC--ChHHHHHHHHHHHHcCCCc
Q 021147 159 RGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGD--SDVEKQYNQIVATTFNCPY 235 (317)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 235 (317)
+...+...++++ +-++||+|. -+++.+||.+++.-....... .....+++.++++.++++.
T Consensus 357 ---------~~~~~~~~~r~~-------~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~ 420 (539)
T COG1123 357 ---------LTGGELRRLRRR-------IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP 420 (539)
T ss_pred ---------cccchhhhhhhh-------eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH
Confidence 222223334444 889999987 577889999998754321111 2333456778899999863
Q ss_pred ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCc
Q 021147 236 LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNL 307 (317)
Q Consensus 236 ~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~ 307 (317)
. ..+.|+ .+||||||||++|||||+.+|+++|+|||+| ||+.++..+.++|.++.+. -+|++
T Consensus 421 ~-~l~ryP---------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 421 E-FLDRYP---------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred H-HHhcCc---------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 2 223577 5999999999999999999999999999999 9999999999999998765 57899
Q ss_pred chhhcccCCC
Q 021147 308 SCKSCARNKV 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
..+..+||||
T Consensus 491 ~vV~~i~drv 500 (539)
T COG1123 491 AVVRYIADRV 500 (539)
T ss_pred HHHHhhCceE
Confidence 9999999986
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=262.21 Aligned_cols=174 Identities=15% Similarity=0.166 Sum_probs=141.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 ml~~~~l~~~~~~~~-i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~----- 64 (200)
T PRK13540 1 MLDVIELDFDYHDQP-L-----LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQS----- 64 (200)
T ss_pred CEEEEEEEEEeCCee-E-----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCc-----
Confidence 589999999997543 4 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.. ....++++ ++|++|++.++ ...|+.+|+.+...... ...++.++++.
T Consensus 65 -----------------~~~-~~~~~~~~-------i~~~~q~~~~~-~~~tv~~~~~~~~~~~~----~~~~~~~~l~~ 114 (200)
T PRK13540 65 -----------------IKK-DLCTYQKQ-------LCFVGHRSGIN-PYLTLRENCLYDIHFSP----GAVGITELCRL 114 (200)
T ss_pred -----------------ccc-CHHHHHhh-------eEEeccccccC-cCCCHHHHHHHHHhcCc----chHHHHHHHHH
Confidence 321 22233333 99999987644 35799999987532111 12356778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++++... ++++ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 115 ~~l~~~~---~~~~--------~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 115 FSLEHLI---DYPC--------GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred cCCchhh---hCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 8864221 3444 6899999999999999999999999999999 999999999999998754
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=274.11 Aligned_cols=204 Identities=17% Similarity=0.165 Sum_probs=154.6
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.++|+++|+++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|++
T Consensus 10 ~~~~l~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~-- 81 (260)
T PRK10744 10 APSKIQVRNLNFYYGKF-HA-----LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN-- 81 (260)
T ss_pred CCceEEEEEEEEEeCCe-EE-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE--
Confidence 45689999999999754 34 99999999999999999999999999999999998621111579999999976
Q ss_pred eeeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CCChHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GDSDVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~ 223 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+..... .......++
T Consensus 82 --------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~ 132 (260)
T PRK10744 82 --------------------ILTPKQDIALLRAK-------VGMVFQKPTPFP--MSIYDNIAFGVRLFEKLSRAEMDER 132 (260)
T ss_pred --------------------ccccccchHHHhcc-------eEEEecCCccCc--CcHHHHHhhhHhhcCCCCHHHHHHH
Confidence 22 1233344444 999999987664 69999998753221 111223456
Q ss_pred HHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 133 ~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 133 VEWALTKAALWNEVKDKL-HQSG--------YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK 203 (260)
T ss_pred HHHHHHHcCCChhhHHHH-hcCC--------CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 778888888631 1111 1222 6899999999999999999999999999999 99999999999999885
Q ss_pred Hh-----cCCCcchhhcccCCC
Q 021147 301 EH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-----~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+...+||+
T Consensus 204 ~~~tiii~sH~~~~~~~~~d~i 225 (260)
T PRK10744 204 QDYTVVIVTHNMQQAARCSDYT 225 (260)
T ss_pred cCCeEEEEeCCHHHHHHhCCEE
Confidence 32 446666666666664
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=269.66 Aligned_cols=197 Identities=22% Similarity=0.324 Sum_probs=146.5
Q ss_pred eEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|+++.|++.. .+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 65 (234)
T cd03251 1 VEFKNVTFRYPGDGPPV-----LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHD----- 65 (234)
T ss_pred CEEEEEEEEeCCCCccc-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEE-----
Confidence 57899999997542 33 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.++. .|+++|+.+..... . .....+.++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~enl~~~~~~~--~---~~~~~~~~~~ 114 (234)
T cd03251 66 -----------------VRDYTLASLRRQ-------IGLVSQDVFLFN--DTVAENIAYGRPGA--T---REEVEEAARA 114 (234)
T ss_pred -----------------hhhCCHHHHHhh-------EEEeCCCCeecc--ccHHHHhhccCCCC--C---HHHHHHHHHH
Confidence 333444444554 999999987764 59999998753211 1 1122333333
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++. ...++.+....+..+. ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~~~~~~~~l~~~l~~~~~~~~--~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 192 (234)
T cd03251 115 ANAHEFIMELPEGYDTVIGERG--VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFV 192 (234)
T ss_pred cCcHHHHHhcccCcceeeccCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3331 1112223333333332 7899999999999999999999999999999 9999999999999987432
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|+|
T Consensus 193 ~sh~~~~~~~-~d~v 206 (234)
T cd03251 193 IAHRLSTIEN-ADRI 206 (234)
T ss_pred EecCHHHHhh-CCEE
Confidence 3345555543 6653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=271.19 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=147.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECcccCcee
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
|+++||+++|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|++ + |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~---- 65 (243)
T TIGR01978 1 LKIKDLHVSVEDK-EI-----LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQD---- 65 (243)
T ss_pred CeEeeEEEEECCE-EE-----EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEe----
Confidence 5789999999754 34 99999999999999999999999999999999995 6 899999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CC-------CChHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EG-------DSDVEK 221 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~-------~~~~~~ 221 (317)
+...+.....+ ..++|++|++.++. .+|+.+|+.+.... .. ......
T Consensus 66 ------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
T TIGR01978 66 ------------------LLELEPDERAR------AGLFLAFQYPEEIP-GVSNLEFLRSALNARRSARGEEPLDLLDFL 120 (243)
T ss_pred ------------------cCCCCHHHhhc------cceEeeeccccccC-CcCHHHHHHHHHHHhhcccccccccHHHHH
Confidence 33333322211 12899999987654 57899998764211 10 111223
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchh-cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL-SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~-~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.++++.... +... . .||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 121 ~~~~~~l~~~~l~~~~~--~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 121 KLLKAKLALLGMDEEFL--NRSV--------NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190 (243)
T ss_pred HHHHHHHHHcCCchhhc--cccc--------ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 45677788888741111 2222 3 599999999999999999999999999999 9999999999999998
Q ss_pred HHh------cCCCcchhhcc-cCCC
Q 021147 300 LEH------ADRNLSCKSCA-RNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~-~~~~ 317 (317)
.+. ..|++..+... +|++
T Consensus 191 ~~~~~tvi~vsH~~~~~~~~~~d~i 215 (243)
T TIGR01978 191 REPDRSFLIITHYQRLLNYIKPDYV 215 (243)
T ss_pred HHCCcEEEEEEecHHHHHhhcCCeE
Confidence 542 45666666665 5653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=264.80 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=151.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++.. + ++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~-i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~--- 74 (214)
T PRK13543 9 PPLLAAHALAFSRNEEP-V-----FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKT--- 74 (214)
T ss_pred cceEEEeeEEEecCCce-e-----eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEE---
Confidence 35899999999997543 4 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+... ..++. ++|++|++.++. .+|+.+|+.+....... ...+.+.+++
T Consensus 75 -------------------i~~~---~~~~~-------i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~--~~~~~~~~~l 122 (214)
T PRK13543 75 -------------------ATRG---DRSRF-------MAYLGHLPGLKA-DLSTLENLHFLCGLHGR--RAKQMPGSAL 122 (214)
T ss_pred -------------------ccch---hhhhc-------eEEeecCccccc-CCcHHHHHHHHHHhcCC--cHHHHHHHHH
Confidence 2211 12223 999999886544 46999999765432111 1223456777
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ ..||+||+||+++||+++.+|+++||||||+ ||+.+++.+.+.++++.+.
T Consensus 123 ~~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 191 (214)
T PRK13543 123 AIVGLAGYE---DTLV--------RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAAL 191 (214)
T ss_pred HHcCChhhc---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888764221 2333 6999999999999999999999999999999 9999999999999987543
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 192 i~sH~~~~~~~~~~~i 207 (214)
T PRK13543 192 VTTHGAYAAPPVRTRM 207 (214)
T ss_pred EEecChhhhhhhcceE
Confidence 456666666666663
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=271.41 Aligned_cols=203 Identities=19% Similarity=0.195 Sum_probs=152.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|++|+++||++.|++. .+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|++
T Consensus 1 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--- 71 (250)
T PRK14240 1 MGKISVKDLDLFYGDF-QA-----LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD--- 71 (250)
T ss_pred CCeEEEEEEEEEECCc-ee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE---
Confidence 4579999999999754 34 99999999999999999999999999999999998622111279999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--ChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--SDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~~~~~~~~ 224 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+....... .....+++
T Consensus 72 -------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~ 123 (250)
T PRK14240 72 -------------------IYKSDIDVNQLRKR-------VGMVFQQPNPFP--MSIYDNVAYGPRTHGIKDKKKLDEIV 123 (250)
T ss_pred -------------------ccccccchHHHhcc-------EEEEecCCccCc--ccHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 221 233334444 999999987664 6999999875422111 12234556
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 124 ~~~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14240 124 EKSLKGAALWDEVKDRL-KKSA--------LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194 (250)
T ss_pred HHHHHHcCCchhhHHHH-hcCC--------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 67777777521 0111 2222 6899999999999999999999999999999 999999999999998743
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 195 ~~tiii~sH~~~~~~~~~d~v 215 (250)
T PRK14240 195 DYTIVIVTHNMQQASRISDKT 215 (250)
T ss_pred CCeEEEEEeCHHHHHhhCCEE
Confidence 2 345666666666664
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=272.58 Aligned_cols=203 Identities=18% Similarity=0.211 Sum_probs=152.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|+++|++
T Consensus 10 ~~~l~i~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~--- 80 (259)
T PRK14274 10 QEVYQINGMNLWYGQH-HA-----LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN--- 80 (259)
T ss_pred CceEEEeeEEEEECCe-ee-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE---
Confidence 4689999999999754 34 99999999999999999999999999999999998721001268999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .+...+++. +||+||++.++.. |+++|+.+...... ......+++
T Consensus 81 -------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~~--tv~enl~~~~~~~~~~~~~~~~~~~ 132 (259)
T PRK14274 81 -------------------ILKGKVDLVELRKN-------IGMVFQKGNPFPQ--SIFDNVAYGPRIHGTKNKKKLQEIV 132 (259)
T ss_pred -------------------ccccccCHHHHhhc-------eEEEecCCccccc--CHHHHHHhHHHhcCCCCHHHHHHHH
Confidence 221 222334444 9999999887753 99999987532211 112223445
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||+++||+++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 133 ~~~l~~~~l~~~~~~~l-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 203 (259)
T PRK14274 133 EKSLKDVALWDEVKDRL-HTQA--------LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203 (259)
T ss_pred HHHHHHcCCchhhhhhh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc
Confidence 66777777631 1111 1222 6899999999999999999999999999999 999999999999999753
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+||+
T Consensus 204 ~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 204 KYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred CCEEEEEEcCHHHHHHhCCEE
Confidence 2 345666666666764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=272.85 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=152.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|++
T Consensus 4 ~l~i~~v~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~----- 72 (258)
T PRK14241 4 RIDVKDLNIYYGSF-HA-----VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED----- 72 (258)
T ss_pred cEEEeeEEEEECCE-ee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe-----
Confidence 69999999999754 34 99999999999999999999999999999999999732111379999999976
Q ss_pred EecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~ 226 (317)
+. ..+...+++. ++|++|++.+++ .+|+.+|+.+...... ......+++.+
T Consensus 73 -----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~ 127 (258)
T PRK14241 73 -----------------LYGPGVDPVAVRRT-------IGMVFQRPNPFP-TMSIRDNVVAGLKLNGVRNKKDLDELVEK 127 (258)
T ss_pred -----------------ccccccChHHHhcc-------eEEEccccccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 21 1222333444 999999987654 5799999986542211 11223345667
Q ss_pred HHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 198 (258)
T PRK14241 128 SLRGANLWNEVKDRL-DKPG--------GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDY 198 (258)
T ss_pred HHHHcCCchhhhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 788887621 1111 2233 6899999999999999999999999999999 9999999999999987432
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 199 tviivsH~~~~~~~~~d~i 217 (258)
T PRK14241 199 TIVIVTHNMQQAARVSDQT 217 (258)
T ss_pred EEEEEecCHHHHHHhCCEE
Confidence 456666666666664
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=269.87 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=147.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~------ 64 (236)
T cd03253 1 IEFENVTFAYDPGRPV-----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQD------ 64 (236)
T ss_pred CEEEEEEEEeCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEE------
Confidence 5789999999643334 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+...+...+++. ++|++|++.+++ .|+.+|+.+..... . ...+...++.+
T Consensus 65 ----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~nl~~~~~~~--~---~~~~~~~~~~~ 114 (236)
T cd03253 65 ----------------IREVTLDSLRRA-------IGVVPQDTVLFN--DTIGYNIRYGRPDA--T---DEEVIEAAKAA 114 (236)
T ss_pred ----------------hhhCCHHHHHhh-------EEEECCCChhhc--chHHHHHhhcCCCC--C---HHHHHHHHHHc
Confidence 444454455554 999999998775 59999998753211 1 11233444444
Q ss_pred CCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----c
Q 021147 232 NCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----A 303 (317)
Q Consensus 232 ~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~ 303 (317)
++. ...++.++.+.+..+. ..||+||+||+++|||++.+|+++||||||+ ||+.+...+.+.|.++.+. .
T Consensus 115 ~l~~~~~~l~~~~~~~~~~~~--~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~ 192 (236)
T cd03253 115 QIHDKIMRFPDGYDTIVGERG--LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI 192 (236)
T ss_pred CcHHHHHhccccccchhhcCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 442 1123334443332332 6899999999999999999999999999999 9999999999999887531 2
Q ss_pred CCCcchhhcccCC
Q 021147 304 DRNLSCKSCARNK 316 (317)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (317)
.|+...+.. +|+
T Consensus 193 sh~~~~~~~-~d~ 204 (236)
T cd03253 193 AHRLSTIVN-ADK 204 (236)
T ss_pred cCCHHHHHh-CCE
Confidence 344455443 554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=274.29 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=152.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc--------CcEEEEC
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 142 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~--------~G~I~i~ 142 (317)
||+++|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~-~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHR-AI-----LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCE-eE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 58999999999754 34 999999999999999999999999999999999999 77 8999999
Q ss_pred cccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cC---C-CC
Q 021147 143 SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-ME---G-DS 217 (317)
Q Consensus 143 g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~---~-~~ 217 (317)
|.+ +...+...+++. ++|+||++..+. .+|+.+|+.+... .. . ..
T Consensus 70 g~~----------------------~~~~~~~~~~~~-------~~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~ 119 (272)
T PRK13547 70 GEP----------------------LAAIDAPRLARL-------RAVLPQAAQPAF-AFSAREIVLLGRYPHARRAGALT 119 (272)
T ss_pred CEE----------------------cccCCHHHHHhh-------cEEecccCCCCC-CCcHHHHHhhcccccccccccCC
Confidence 986 434444444444 899999875433 4799999986431 11 1 11
Q ss_pred hHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHH
Q 021147 218 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPE 287 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~ 287 (317)
....+.+.++++.+++.... +... .+||+||+||+++|||++ .+|+++||||||+ ||+.
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~ 188 (272)
T PRK13547 120 HRDGEIAWQALALAGATALV---GRDV--------TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188 (272)
T ss_pred HHHHHHHHHHHHHcCcHhhh---cCCc--------ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHH
Confidence 22334566788888874221 2333 699999999999999999 5999999999999 9999
Q ss_pred HHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 288 NELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 288 t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
++..+.+.|+++.+. ..|++..+...+|++
T Consensus 189 ~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 999999999988653 346666666666663
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=264.19 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=148.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++||++.|+. . ++++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 ~~~~~l~~~~~~---~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 61 (213)
T TIGR01277 1 LALDKVRYEYEH---L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQS------ 61 (213)
T ss_pred CeEEeeeEEeCC---c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE------
Confidence 478999999962 2 789999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~a~~ 230 (317)
+.... .+++. ++|++|++.++. .+|+.+|+.+... .........+++.++++.
T Consensus 62 ----------------~~~~~--~~~~~-------i~~v~q~~~~~~-~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (213)
T TIGR01277 62 ----------------HTGLA--PYQRP-------VSMLFQENNLFA-HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQ 115 (213)
T ss_pred ----------------cccCC--hhccc-------eEEEeccCccCC-CCcHHHHHHhHhhccCCccHHHHHHHHHHHHH
Confidence 32221 12333 999999987553 5799999976421 111112234556778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 116 VGIADYL---DRLP--------EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred cCcHHHh---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999998643
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|+|
T Consensus 185 vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 185 VTHHLSDARAIASQI 199 (213)
T ss_pred EeCCHHHHHhhcCeE
Confidence 335666666667764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=269.61 Aligned_cols=199 Identities=14% Similarity=0.200 Sum_probs=151.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc---ccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl---~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++|+++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+ ++|. |++|+|.++|++
T Consensus 2 ~~l~~~~~~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~---~~~G~i~~~g~~- 71 (250)
T PRK14245 2 VKIDARDVNFWYGDF-HA-----LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT---RLEGEIRIDGRN- 71 (250)
T ss_pred cEEEEEEEEEEECCE-eE-----EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC---CCceEEEECCEe-
Confidence 579999999999754 33 9999999999999999999999999999999997 3411 258999999986
Q ss_pred ceeeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~ 222 (317)
+... +...+++. ++|+||++.++. .|+.+|+.+...... ......+
T Consensus 72 ---------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~ 121 (250)
T PRK14245 72 ---------------------IYDKGVQVDELRKN-------VGMVFQRPNPFP--KSIFENVAYGLRVNGVKDNAFIRQ 121 (250)
T ss_pred ---------------------cccccccHHHHhhh-------eEEEecCCccCc--ccHHHHHHHHHHHcCCCcHHHHHH
Confidence 3222 22334444 999999987775 499999986532211 1122345
Q ss_pred HHHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 122 ~~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 122 RVEETLKGAALWDEVKDKL-KESA--------FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred HHHHHHHHcCCCcchhhhh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 5677888888732 1111 2223 6899999999999999999999999999999 9999999999999997
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.+.+|||
T Consensus 193 ~~~~tiiivtH~~~~~~~~~d~v 215 (250)
T PRK14245 193 KKDYTIVIVTHNMQQAARVSDKT 215 (250)
T ss_pred hcCCeEEEEeCCHHHHHhhCCEE
Confidence 432 446666666777764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=273.03 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=153.4
Q ss_pred CCceEEEeEEEEcCC--------CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 69 GSLTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 69 ~~~I~~~nls~~y~~--------~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
|++|+++||++.|+. ...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~ 70 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTV-----LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVS 70 (268)
T ss_pred CceEEEeceEEEecCCccccccCceee-----EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 357999999999973 2334 999999999999999999999999999999999999 9999999
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cCC
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-MEG 215 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~~ 215 (317)
++|++ +...+.. .+++. ++|++|++. .+....|+.+|+.+... ...
T Consensus 71 ~~g~~----------------------~~~~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~ 121 (268)
T PRK10419 71 WRGEP----------------------LAKLNRAQRKAFRRD-------IQMVFQDSISAVNPRKTVREIIREPLRHLLS 121 (268)
T ss_pred ECCEe----------------------ccccChhHHHHHHhc-------EEEEEcChhhccCCCCCHHHHHHHHHHhhcc
Confidence 99976 3333332 23333 999999974 35456789999865321 111
Q ss_pred -CChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 216 -DSDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 216 -~~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
........+.++++.+++. ... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+
T Consensus 122 ~~~~~~~~~~~~~l~~~gl~~~~~---~~~~--------~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~ 190 (268)
T PRK10419 122 LDKAERLARASEMLRAVDLDDSVL---DKRP--------PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190 (268)
T ss_pred CCHHHHHHHHHHHHHHcCCChhHh---hCCC--------ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 1222334567788888873 221 2233 6899999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|+...+...+|++
T Consensus 191 ~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred HHHHHHHHHHcCcEEEEEECCHHHHHHhCCEE
Confidence 9999988653 346666666666764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=267.05 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=149.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++ . ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~--~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~----- 62 (232)
T PRK10771 1 MLKLTDITWLYHH--L------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQD----- 62 (232)
T ss_pred CeEEEEEEEEECC--c------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCee-----
Confidence 5899999999963 2 448999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
+...+. .++ .++|++|++.++. .+|+.+|+.+..... .......+++.++++
T Consensus 63 -----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 115 (232)
T PRK10771 63 -----------------HTTTPP--SRR-------PVSMLFQENNLFS-HLTVAQNIGLGLNPGLKLNAAQREKLHAIAR 115 (232)
T ss_pred -----------------cCcCCh--hhc-------cEEEEeccccccc-CCcHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 322222 122 2999999987554 479999997642111 112233456788899
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 116 ~~~l~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tii 184 (232)
T PRK10771 116 QMGIEDLL---ARLP--------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLL 184 (232)
T ss_pred HcCcHHHH---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 98874221 2333 6899999999999999999999999999999 9999999999999988653
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|||
T Consensus 185 i~sH~~~~~~~~~d~i 200 (232)
T PRK10771 185 MVSHSLEDAARIAPRS 200 (232)
T ss_pred EEECCHHHHHHhCCEE
Confidence 346666666666664
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=260.77 Aligned_cols=174 Identities=16% Similarity=0.218 Sum_probs=140.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (198)
T TIGR01189 1 LAARNLACSRGER-ML-----FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTA------ 63 (198)
T ss_pred CEEEEEEEEECCE-EE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... ..+++. ++|++|++.+++ .+|+.+|+.+....... . .+++.++++.+
T Consensus 64 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~-~--~~~~~~~l~~~ 115 (198)
T TIGR01189 64 ----------------LAEQR-DEPHRN-------ILYLGHLPGLKP-ELSALENLHFWAAIHGG-A--QRTIEDALAAV 115 (198)
T ss_pred ----------------cccch-HHhhhh-------eEEeccCccccc-CCcHHHHHHHHHHHcCC-c--HHHHHHHHHHc
Confidence 32222 123333 999999876543 47999999875432221 1 33567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 116 ~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 116 GLTGFE---DLPA--------AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred CCHHHh---cCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 874221 2333 6899999999999999999999999999999 999999999999998754
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=273.07 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=152.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~--- 89 (276)
T PRK14271 19 APAMAAVNLTLGFAGK-TV-----LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS--- 89 (276)
T ss_pred CcEEEEeeEEEEECCE-EE-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE---
Confidence 4589999999999754 34 99999999999999999999999999999999999843222479999999975
Q ss_pred eeEecccCCCCcccccceeeccC-ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~ 225 (317)
+..+ +...+++. ++|++|++.+|+ .|+.+|+.+...... .. ......+.
T Consensus 90 -------------------i~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~ 141 (276)
T PRK14271 90 -------------------IFNYRDVLEFRRR-------VGMLFQRPNPFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQ 141 (276)
T ss_pred -------------------ccccchhHHHhhh-------eEEeccCCccCC--ccHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3222 12233444 999999987765 599999987532211 11 12223445
Q ss_pred HHHHHcCCCcccC-CCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPYLSF-RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l-~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.+++..... ..+... .+||+||+||++||||++.+|+++||||||+ ||+.+++.+.+.|+++.+.
T Consensus 142 ~~l~~~~l~~~~~~~l~~~~--------~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 213 (276)
T PRK14271 142 ARLTEVGLWDAVKDRLSDSP--------FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213 (276)
T ss_pred HHHHHcCCCchhhhHhhCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 6677777631100 001222 6899999999999999999999999999999 9999999999999987542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 214 tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 214 TVIIVTHNLAQAARISDRA 232 (276)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 445666666666664
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=263.92 Aligned_cols=194 Identities=13% Similarity=0.165 Sum_probs=150.5
Q ss_pred eEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++||++.|+++ ..+ |+++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|++
T Consensus 2 l~~~~l~~~~~~~~~~~~i-----l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~--- 68 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQV-----LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQE--- 68 (220)
T ss_pred EEEEEEEEEccCCCcceeE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE---
Confidence 7899999999642 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~ 223 (317)
+...+.. ..++. ++|++|++.++. ..|+.+|+.+...... ......+.
T Consensus 69 -------------------~~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~~n~~~~~~~~~~~~~~~~~~~ 121 (220)
T TIGR02982 69 -------------------LYGASEKELVQLRRN-------IGYIFQAHNLLG-FLTARQNVQMALELQPNLSYQEARER 121 (220)
T ss_pred -------------------hHhcCHhHHHHHHhh-------eEEEcCChhhcC-CCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 3333322 23333 999999987665 5799999987643221 11223445
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... .... .+||+||+||+++||+++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 122 ~~~~l~~~~l~~~~---~~~~--------~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 122 ARAMLEAVGLGDHL---DYYP--------HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHcCChhhh---hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 67788888873211 1222 6899999999999999999999999999999 9999999999999998652
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|+... .+.+|+|
T Consensus 191 ~~~tii~~sh~~~~-~~~~d~v 211 (220)
T TIGR02982 191 QGCTILIVTHDNRI-LDVADRI 211 (220)
T ss_pred cCCEEEEEeCCHHH-HhhCCEE
Confidence 3455553 3456653
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=296.64 Aligned_cols=200 Identities=16% Similarity=0.199 Sum_probs=156.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++|+ |++|+|.++|.+
T Consensus 3 ~~~l~~~nl~~~~~~~-~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~--- 70 (506)
T PRK13549 3 EYLLEMKNITKTFGGV-KA-----LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG---TYEGEIIFEGEE--- 70 (506)
T ss_pred CceEEEeeeEEEeCCe-Ee-----ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEE---
Confidence 3579999999999754 34 99999999999999999999999999999999999822 389999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--C--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--G--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~--~~~~~~~~~ 224 (317)
+...+....+ .+.+||++|++.++. .+|+.+|+.+..... . ......+++
T Consensus 71 -------------------~~~~~~~~~~------~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 124 (506)
T PRK13549 71 -------------------LQASNIRDTE------RAGIAIIHQELALVK-ELSVLENIFLGNEITPGGIMDYDAMYLRA 124 (506)
T ss_pred -------------------CCCCCHHHHH------HCCeEEEEeccccCC-CCcHHHHhhhcccccccCCcCHHHHHHHH
Confidence 3333332221 123999999986554 589999998754221 1 112234557
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +..+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 125 ~~~l~~~~l~~~~---~~~~--------~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 193 (506)
T PRK13549 125 QKLLAQLKLDINP---ATPV--------GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193 (506)
T ss_pred HHHHHHcCCCCCc---ccch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 7888888874221 3344 7999999999999999999999999999999 9999999999999998542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 194 ~tvi~~tH~~~~~~~~~d~v 213 (506)
T PRK13549 194 IACIYISHKLNEVKAISDTI 213 (506)
T ss_pred CEEEEEeCcHHHHHHhcCEE
Confidence 567777777777764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=266.04 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=146.3
Q ss_pred CCCceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 68 IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..++|+++|++++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~ 77 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLV-----LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKP 77 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCcc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCc
Confidence 45789999999999753 233 999999999999999999999999999999999999 999999999976
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHH---
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ--- 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~--- 222 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+...... .....+
T Consensus 78 ----------------------~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~~nl~~~~~~~~-~~~~~~~~~ 125 (226)
T cd03248 78 ----------------------ISQYEHKYLHSK-------VSLVGQEPVLFA--RSLQDNIAYGLQSCS-FECVKEAAQ 125 (226)
T ss_pred ----------------------hHHcCHHHHHhh-------EEEEecccHHHh--hhHHHHhccccCCCC-HHHHHHHHH
Confidence 333343344444 999999987664 599999986432111 111000
Q ss_pred --HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 --YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 --~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+.+.++.+. .+....+..+. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++
T Consensus 126 ~~~~~~~l~~l~-------~gl~~~~~~~~--~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 126 KAHAHSFISELA-------SGYDTEVGEKG--SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred HcCcHHHHHhcc-------ccccchhhcCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1223344441 11111111111 6899999999999999999999999999999 9999999999999987
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|+...+.+ +|+|
T Consensus 197 ~~~~tii~~sh~~~~~~~-~d~i 218 (226)
T cd03248 197 PERRTVLVIAHRLSTVER-ADQI 218 (226)
T ss_pred cCCCEEEEEECCHHHHHh-CCEE
Confidence 532 3455555544 6653
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=269.73 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=152.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 71 (249)
T PRK14253 2 NKFNIENLDLFYGEN-QA-----LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---- 71 (249)
T ss_pred CeEEEeccEEEECCe-ee-----eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE----
Confidence 479999999999753 34 99999999999999999999999999999999999832222369999999975
Q ss_pred eEecccCCCCcccccceeec-cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-C-ChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-D-SDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~-~~~~~~~~~~ 226 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+...... . .....+++.+
T Consensus 72 ------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 124 (249)
T PRK14253 72 ------------------IYGNIDVADLRIK-------VGMVFQKPNPFP--MSIYENVAYGLRAQGIKDKKVLDEVVER 124 (249)
T ss_pred ------------------cccccchHHHHhh-------eeEEecCCCcCc--ccHHHHHHhHHHhcCCCchHHHHHHHHH
Confidence 22 2233344444 999999987664 699999987532211 1 1222345566
Q ss_pred HHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++... ... +... .+||+||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 125 ~~~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 195 (249)
T PRK14253 125 SLRGAALWDEVKDRL-KSHA--------FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY 195 (249)
T ss_pred HHHHcCCchhhhHHh-hcCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 7777776311 111 1222 6899999999999999999999999999999 9999999999999998542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+||+
T Consensus 196 tii~~sh~~~~~~~~~d~i 214 (249)
T PRK14253 196 TIVIVTHSMQQARRISDRT 214 (249)
T ss_pred eEEEEecCHHHHHHhCCEE
Confidence 445666666666663
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=270.57 Aligned_cols=203 Identities=15% Similarity=0.172 Sum_probs=153.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|+++|.....++|+|.++|++
T Consensus 5 ~~~l~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~--- 75 (259)
T PRK14260 5 IPAIKVKDLSFYYNTS-KA-----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN--- 75 (259)
T ss_pred cceEEEEEEEEEECCe-Ee-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEe---
Confidence 4579999999999753 34 99999999999999999999999999999999999832100058999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .....++.. ++|++|++.+++ .|+.+|+.+...... ......+++
T Consensus 76 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 127 (259)
T PRK14260 76 -------------------IYDPRININRLRRQ-------IGMVFQRPNPFP--MSIYENVAYGVRISAKLPQADLDEIV 127 (259)
T ss_pred -------------------ccccccchHhhhhh-------eEEEecccccCC--ccHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 221 222334444 999999987775 699999987532211 112223456
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 128 ~~~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (259)
T PRK14260 128 ESALKGAALWQEVKDKL-NKSA--------LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS 198 (259)
T ss_pred HHHHHHcCCcchhhhHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 67788877621 1111 1222 6899999999999999999999999999999 999999999999998753
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+.+.+|++
T Consensus 199 ~~tiii~tH~~~~i~~~~d~i 219 (259)
T PRK14260 199 ELTIAIVTHNMQQATRVSDFT 219 (259)
T ss_pred CCEEEEEeCCHHHHHHhcCeE
Confidence 2 456677777777764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=274.30 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=154.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 36 ~~~~l~i~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~-- 107 (285)
T PRK14254 36 GETVIEARDLNVFYGDE-QA-----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN-- 107 (285)
T ss_pred CCceEEEEEEEEEECCE-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE--
Confidence 35689999999999754 34 99999999999999999999999999999999998721111589999999976
Q ss_pred eeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.++. .|+.+|+.+............+++.
T Consensus 108 --------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~ 158 (285)
T PRK14254 108 --------------------VYDADVDPVALRRR-------IGMVFQKPNPFP--KSIYDNVAYGLKIQGYDGDIDERVE 158 (285)
T ss_pred --------------------ccccccchHhhhcc-------EEEEecCCccCc--CCHHHHHHHHHHHcCCcHHHHHHHH
Confidence 221 222333444 999999987665 3999999865322111122345577
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 159 ~~l~~~~l~~~i~~~~-~~~~--------~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~ 229 (285)
T PRK14254 159 ESLRRAALWDEVKDQL-DSSG--------LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229 (285)
T ss_pred HHHHHcCCCchhHHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 7888888631 1111 2223 6999999999999999999999999999999 9999999999999998542
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|++..+...+||
T Consensus 230 ~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 230 YTVVIVTHNMQQAARISDK 248 (285)
T ss_pred CEEEEEeCCHHHHHhhcCE
Confidence 45666776667776
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=272.06 Aligned_cols=202 Identities=18% Similarity=0.188 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|++.+....|++|+|.++|++
T Consensus 9 ~~l~i~~v~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~---- 78 (264)
T PRK14243 9 TVLRTENLNVYYGSF-LA-----VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN---- 78 (264)
T ss_pred eEEEEeeeEEEECCE-EE-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE----
Confidence 479999999999754 34 99999999999999999999999999999999998622101379999999976
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+. ..+...+++. ++|++|++.+++ .|+.+|+.+............+++.++
T Consensus 79 ------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 131 (264)
T PRK14243 79 ------------------LYAPDVDPVEVRRR-------IGMVFQKPNPFP--KSIYDNIAYGARINGYKGDMDELVERS 131 (264)
T ss_pred ------------------ccccccChHHHhhh-------EEEEccCCcccc--ccHHHHHHhhhhhcCcchHHHHHHHHH
Confidence 21 1223334444 999999987665 399999987543211111223345556
Q ss_pred HHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 132 l~~~~l~~~l~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~t 202 (264)
T PRK14243 132 LRQAALWDEVKDKL-KQSG--------LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT 202 (264)
T ss_pred HHHhCchhhHHHHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCE
Confidence 67766521 1111 2222 6899999999999999999999999999999 9999999999999987532
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
+.|++..+...+|||
T Consensus 203 vi~vtH~~~~~~~~~d~v 220 (264)
T PRK14243 203 IIIVTHNMQQAARVSDMT 220 (264)
T ss_pred EEEEecCHHHHHHhCCEE
Confidence 456777777777764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=268.65 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=153.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~--- 72 (251)
T PRK14270 2 KIKMESKNLNLWYGEK-QA-----LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN--- 72 (251)
T ss_pred ccEEEEEEeEEEECCe-ee-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe---
Confidence 3689999999999753 34 99999999999999999999999999999999999732111279999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--ChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--SDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~~~~~~~~ 224 (317)
+.. .+....++. ++|+||++.++. .|+++|+.+....... .....+++
T Consensus 73 -------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 124 (251)
T PRK14270 73 -------------------IYDKDVDVVELRKR-------VGMVFQKPNPFP--MSIYDNVAYGPRIHGIKDKKELDKIV 124 (251)
T ss_pred -------------------cccccccHHHHHhh-------eEEEecCCCcCC--CcHHHHHHhHHHhcCCCcHHHHHHHH
Confidence 322 122233444 999999987664 6999999875422111 12223456
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 125 ~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 195 (251)
T PRK14270 125 EWALKKAALWDEVKDDL-KKSA--------LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK 195 (251)
T ss_pred HHHHHHcCCchhhhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 67788887621 1111 1222 6899999999999999999999999999999 999999999999998754
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|||
T Consensus 196 ~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 196 EYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred CCeEEEEEcCHHHHHHhcCEE
Confidence 2 446666666666664
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=270.85 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=152.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+|+||+|++||++||+|+||||||||+++|+|+++|....|++|+|.++|++
T Consensus 18 ~~~l~~~nl~~~~~~~-~i-----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 88 (267)
T PRK14237 18 EIALSTKDLHVYYGKK-EA-----IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID--- 88 (267)
T ss_pred CeEEEEeeEEEEECCe-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE---
Confidence 3589999999999653 34 99999999999999999999999999999999999732112589999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~ 224 (317)
+.. .+...+++. |+|+||++.++. .|+.+|+.++..... .......++
T Consensus 89 -------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 140 (267)
T PRK14237 89 -------------------INRKEINVYEMRKH-------IGMVFQRPNPFA--KSIYENITFALERAGVKDKKVLDEIV 140 (267)
T ss_pred -------------------cccccCChHHHhcc-------eEEEecCCcccc--ccHHHHHHhHHHhcCCCCHHHHHHHH
Confidence 221 223334444 999999987765 499999987532211 112234556
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 141 ~~~l~~~~l~~~i~~~~-~~~~--------~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 211 (267)
T PRK14237 141 ETSLKQAALWDQVKDDL-HKSA--------LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK 211 (267)
T ss_pred HHHHHHcCCCchhhhhh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 77788887631 0111 1222 6999999999999999999999999999999 999999999999998743
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+|+|
T Consensus 212 ~~tiii~tH~~~~~~~~~d~i 232 (267)
T PRK14237 212 NYTIIIVTHNMQQAARASDYT 232 (267)
T ss_pred CCEEEEEecCHHHHHHhcCEE
Confidence 2 345555555666653
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=257.76 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=133.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeec--c
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIR--R 170 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~--~ 170 (317)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++ +. .
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~----------------------~~~~~ 60 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEP----------------------LDYSR 60 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEE----------------------ccccc
Confidence 999999999999999999999999999999999999 999999999976 21 1
Q ss_pred CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 171 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 171 ~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
.....+++. ++|++|++.......|+.+|+.+...... ......+++.++++.+++.... ....
T Consensus 61 ~~~~~~~~~-------i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----- 125 (190)
T TIGR01166 61 KGLLERRQR-------VGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR---ERPT----- 125 (190)
T ss_pred cchHHHHhh-------EEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh---hCCh-----
Confidence 122233334 99999997422224699999987532211 1122345567888888874221 2233
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCcchhhc
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNLSCKSC 312 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~~~~~~ 312 (317)
.+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.++ +.-+-++++
T Consensus 126 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 126 ---HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEee
Confidence 6899999999999999999999999999999 9999999999999998543 333444443
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=327.26 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=174.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC--CccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I 100 (317)
++..|.......+..+.+++.+.+|+.+++..++.... ...+.|+++|++|+|+.. ..+ |+|+||+|
T Consensus 566 ~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v-----L~~inl~i 640 (1622)
T PLN03130 566 VLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT-----LSNINLDV 640 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce-----eeceeEEe
Confidence 44556666777888999999999999999875432111 112369999999999742 333 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC-cEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~-G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
++|+.++|+||||||||||+++|.|.++ |++ |+|.+.++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~GG~I~l~~~----------------------------------- 680 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELP-----PRSDASVVIRGT----------------------------------- 680 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhc-----cCCCceEEEcCe-----------------------------------
Confidence 9999999999999999999999999999 999 89985432
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|+||+|+|.+|+. ||+|||.|+.++ +.++..++++.+++. +..+|+|..|.|+++| ..|||
T Consensus 681 -------Iayv~Q~p~Lfng--TIreNI~fg~~~------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G--~~LSG 743 (1622)
T PLN03130 681 -------VAYVPQVSWIFNA--TVRDNILFGSPF------DPERYERAIDVTALQHDLDLLPGGDLTEIGERG--VNISG 743 (1622)
T ss_pred -------EEEEcCccccCCC--CHHHHHhCCCcc------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC--CCCCH
Confidence 9999999998875 999999998653 234578888888883 5568999999999999 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYC 299 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l 299 (317)
||||||+||||++++|+++|||||+| ||+.+++.+.+ .++.+
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999 99999988764 45544
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=325.64 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=173.5
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC--CccccccCceeeeeEe
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDV 100 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I 100 (317)
++..|.......+..+.+++.+.+|+.++++.+++... ...+.|+++|++|+|++. ..+ |+|+||+|
T Consensus 566 ~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v-----L~~inl~i 640 (1495)
T PLN03232 566 VLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT-----LSDINLEI 640 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce-----eeeeEEEE
Confidence 45566777778889999999999999999976543211 112369999999999742 334 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.++|+||||||||||+++|.|+++ |++|.+.. ++..
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~G~i~~----------------------------------~~~~- 680 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELS-----HAETSSVV----------------------------------IRGS- 680 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCc-----ccCCCEEE----------------------------------ecCc-
Confidence 9999999999999999999999999999 98886541 1122
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
|+||+|++.+|+. ||+|||.++.++ +.++..++++.+++. ...+|+|+.|.|+++| ..||||
T Consensus 681 ------Iayv~Q~p~Lf~g--TIreNI~fg~~~------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G--~~LSGG 744 (1495)
T PLN03232 681 ------VAYVPQVSWIFNA--TVRENILFGSDF------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERG--VNISGG 744 (1495)
T ss_pred ------EEEEcCccccccc--cHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC--cccCHH
Confidence 9999999999976 999999988632 234577888888873 5568999999999999 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH-HHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM-LRYC 299 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~-l~~l 299 (317)
||||++||||++++|+++||||||| ||+.+++.+.+. +...
T Consensus 745 QkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~ 787 (1495)
T PLN03232 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787 (1495)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999 999999988665 4443
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=295.54 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=155.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~---- 67 (501)
T PRK10762 3 ALLQLKGIDKAFPGV-KA-----LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKE---- 67 (501)
T ss_pred ceEEEeeeEEEeCCe-EE-----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---C-CC-hHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---G-DS-DVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~-~~-~~~~~~~ 224 (317)
+...+....+ .+.++|++|++.++. .+|+++|+.++.... . .. ....+++
T Consensus 68 ------------------~~~~~~~~~~------~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 122 (501)
T PRK10762 68 ------------------VTFNGPKSSQ------EAGIGIIHQELNLIP-QLTIAENIFLGREFVNRFGRIDWKKMYAEA 122 (501)
T ss_pred ------------------CCCCCHHHHH------hCCEEEEEcchhccC-CCcHHHHhhhccccccccCccCHHHHHHHH
Confidence 3222222211 123999999986554 689999998753211 1 11 2223456
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 123 ~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 191 (501)
T PRK10762 123 DKLLARLNLRFSS---DKLV--------GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191 (501)
T ss_pred HHHHHHcCCCCCc---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence 7788888874221 3334 7999999999999999999999999999999 9999999999999998543
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 192 ~tvii~sHd~~~~~~~~d~i 211 (501)
T PRK10762 192 RGIVYISHRLKEIFEICDDV 211 (501)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 467777777788774
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=271.00 Aligned_cols=203 Identities=19% Similarity=0.212 Sum_probs=151.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++.....|++|+|.++|++
T Consensus 19 ~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 89 (268)
T PRK14248 19 EHILEVKDLSIYYGEK-RA-----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN--- 89 (268)
T ss_pred CceEEEEEEEEEeCCc-ee-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE---
Confidence 4589999999999754 34 99999999999999999999999999999999986310001689999999986
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC--hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS--DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~--~~~~~~~ 224 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+........ ....+.+
T Consensus 90 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 141 (268)
T PRK14248 90 -------------------ILDSNINVVNLRRE-------IGMVFQKPNPFP--KSIYNNITHALKYAGERRKSVLDEIV 141 (268)
T ss_pred -------------------cccccccHHHHhcc-------EEEEecCCccCc--ccHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 221 122233334 999999987775 39999998653222111 1223445
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 142 ~~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 142 EESLTKAALWDEVKDRL-HSSA--------LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHHHHHcCCCcchHHHH-hcCc--------ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 66677776521 0111 2222 6899999999999999999999999999999 999999999999999853
Q ss_pred -----hcCCCcchhhcccCCC
Q 021147 302 -----HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 -----~~~~~~~~~~~~~~~~ 317 (317)
...|++..+.+.+|||
T Consensus 213 ~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 213 EYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred CCEEEEEEeCHHHHHHhCCEE
Confidence 2456666666777764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=268.68 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=150.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~-~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~---- 71 (250)
T PRK14262 2 PIIEIENFSAYYGEK-KA-----VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD---- 71 (250)
T ss_pred ceEEEEeeEEEeCCc-ee-----EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE----
Confidence 579999999999753 33 99999999999999999999999999999999999721001289999999975
Q ss_pred eEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-C-ChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-D-SDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~-~~~~~~~~~ 225 (317)
+... +...+++. ++|++|++.++. .|+++|+.+...... . .....+++.
T Consensus 72 ------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14262 72 ------------------IYDPQLDVTEYRKK-------VGMVFQKPTPFP--MSIYDNVAFGPRIHGVKSKHKLDRIVE 124 (250)
T ss_pred ------------------cccchhhHHHhhhh-------EEEEecCCccCc--ccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 2221 12223333 999999987664 699999987532211 1 122334566
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++... ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (250)
T PRK14262 125 ESLKKAALWDEVKSEL-NKPG--------TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN 195 (250)
T ss_pred HHHHHcCCCchhHHHH-hCCh--------hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcC
Confidence 77777776311 111 2222 7999999999999999999999999999999 9999999999999987532
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 196 ~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 196 YTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred cEEEEEeCCHHHHHHhCCEE
Confidence 345555555556653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=268.15 Aligned_cols=199 Identities=19% Similarity=0.227 Sum_probs=150.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC---cCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p---~~G~I~i~g~~~ 146 (317)
++|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++. | ++|+|.++|++
T Consensus 4 ~~l~~~~l~~~~~~~-~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~- 73 (252)
T PRK14239 4 PILQVSDLSVYYNKK-KA-----LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHN- 73 (252)
T ss_pred ceEEEEeeEEEECCe-ee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEE-
Confidence 479999999999754 34 99999999999999999999999999999999995311 5 58999999976
Q ss_pred ceeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQ 222 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~ 222 (317)
+.. .+...+++. ++|+||++.+++ .|+.+|+.+...... .. ....+
T Consensus 74 ---------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~ 123 (252)
T PRK14239 74 ---------------------IYSPRTDTVDLRKE-------IGMVFQQPNPFP--MSIYENVVYGLRLKGIKDKQVLDE 123 (252)
T ss_pred ---------------------CcCcccchHhhhhc-------EEEEecCCccCc--CcHHHHHHHHHHHcCCCcHHHHHH
Confidence 221 122233444 999999987765 699999987532211 11 12234
Q ss_pred HHHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.++|+++
T Consensus 124 ~~~~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 124 AVEKSLKGASIWDEVKDRL-HDSA--------LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred HHHHHHHHcCCchhHHHHH-hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 5566777777521 1111 2222 6899999999999999999999999999999 9999999999999987
Q ss_pred HHh-----cCCCcchhhcccCCC
Q 021147 300 LEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|||
T Consensus 195 ~~~~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 195 KDDYTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred hhCCeEEEEECCHHHHHHhCCEE
Confidence 532 456666666666764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=266.93 Aligned_cols=197 Identities=19% Similarity=0.248 Sum_probs=145.0
Q ss_pred eEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 72 TDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 72 I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
|+++|+++.|++. ..+ |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~i~~l~~~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~---- 66 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI-----LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVD---- 66 (238)
T ss_pred CeEEEEEEecCCCCCccc-----eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEe----
Confidence 5789999999643 233 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. ++|++|++.++. .|+.+|+.+..... . .++..+.++
T Consensus 67 ------------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~e~l~~~~~~~--~---~~~~~~~~~ 114 (238)
T cd03249 67 ------------------IRDLNLRWLRSQ-------IGLVSQEPVLFD--GTIAENIRYGKPDA--T---DEEVEEAAK 114 (238)
T ss_pred ------------------hhhcCHHHHHhh-------EEEECCchhhhh--hhHHHHhhccCCCC--C---HHHHHHHHH
Confidence 333343334444 999999987664 59999998653211 1 112233334
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
..++. ...++.+....+..+. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~--~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi 192 (238)
T cd03249 115 KANIHDFIMSLPDGYDTLVGERG--SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTI 192 (238)
T ss_pred HcChHHHHHhhccccceeeccCC--ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33331 1112223333332222 6899999999999999999999999999999 9999999999999987521
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|++..+. .+|+|
T Consensus 193 ~~sh~~~~~~-~~d~v 207 (238)
T cd03249 193 VIAHRLSTIR-NADLI 207 (238)
T ss_pred EEeCCHHHHh-hCCEE
Confidence 345555554 46653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=268.91 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=150.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|++
T Consensus 5 ~~i~~~~l~~~~~~~~-~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~---- 74 (253)
T PRK14261 5 IILSTKNLNLWYGEKH-A-----LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN---- 74 (253)
T ss_pred ceEEEeeeEEEECCee-e-----eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE----
Confidence 4799999999997543 3 99999999999999999999999999999999997632000258999999976
Q ss_pred eEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~ 225 (317)
+... +....++. ++|++|++.+++ .|+.+|+.+...... .. ....+++.
T Consensus 75 ------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~ 127 (253)
T PRK14261 75 ------------------IMDSGADVVALRRK-------IGMVFQRPNPFP--KSIYENVAYGPRIHGEKNKKTLDTIVE 127 (253)
T ss_pred ------------------ccccccchhhhhce-------EEEEecCCccCc--ccHHHHHHhhHHhcCCCCHHHHHHHHH
Confidence 3222 22233333 999999998776 399999987543211 11 22234566
Q ss_pred HHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.+++.. .....+... ..||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 128 ~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~ 199 (253)
T PRK14261 128 KSLKGAALWDEVKDRLHDSA--------LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY 199 (253)
T ss_pred HHHHHhcCchhhHHHhhcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCc
Confidence 6777777521 000012222 7899999999999999999999999999999 9999999999999987542
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|+|
T Consensus 200 tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 200 TVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred eEEEEEcCHHHHHhhCCEE
Confidence 445666666666653
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=260.82 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=140.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 2 ~l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (207)
T PRK13539 2 MLEGEDLACVRGGR-VL-----FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGD----- 65 (207)
T ss_pred EEEEEeEEEEECCe-EE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe-----
Confidence 68999999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.. .. .++. ++|++|+..++ ...|+.+|+.+........ .+++.++++.
T Consensus 66 -----------------~~~--~~-~~~~-------~~~~~~~~~~~-~~~tv~~~l~~~~~~~~~~---~~~~~~~l~~ 114 (207)
T PRK13539 66 -----------------IDD--PD-VAEA-------CHYLGHRNAMK-PALTVAENLEFWAAFLGGE---ELDIAAALEA 114 (207)
T ss_pred -----------------Ccc--hh-hHhh-------cEEecCCCcCC-CCCcHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence 211 11 3444 99999876543 3579999998654321111 2346788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+++.... ..+. ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 115 ~~l~~~~---~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (207)
T PRK13539 115 VGLAPLA---HLPF--------GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175 (207)
T ss_pred cCCHHHH---cCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 8874221 2333 6899999999999999999999999999999 999999999999998754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=289.27 Aligned_cols=211 Identities=18% Similarity=0.213 Sum_probs=168.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|...... +.+++||||+|.+||++||||+|||||||++++|+|++++.. ...+|+|.++|++
T Consensus 4 ~lL~V~nL~v~~~~~~~~--~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~d---- 76 (539)
T COG1123 4 PLLEVENLTVEFATDGGR--VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRD---- 76 (539)
T ss_pred ceEEEeceEEEEecCCcc--eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcc----
Confidence 489999999999644211 234999999999999999999999999999999999998431 2358999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhh--ccCCCChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLK--SMEGDSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~--~~~~~~~~~~~~~~~ 226 (317)
+..++.+.+++. .-+.|+|+||+|. .+++.+||.+.+.-.. .......+..+++.+
T Consensus 77 ------------------l~~l~~~~~r~~---rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~e 135 (539)
T COG1123 77 ------------------LLGLSEREMRKL---RGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135 (539)
T ss_pred ------------------hhcCCHHHHHHh---ccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 445555444322 2245999999975 6788889888875332 221224556788889
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++|.....+.|+ .+||||||||+.||+||+.+|+++|+||||. ||+.++..|.++|+++.+.
T Consensus 136 lL~~Vgl~~~~~~~~yP---------heLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~ 206 (539)
T COG1123 136 LLEQVGLPDPERRDRYP---------HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM 206 (539)
T ss_pred HHHHcCCCChhhhccCC---------cccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCc
Confidence 99999996332224588 5999999999999999999999999999999 9999999999999999854
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
-.|++..++.++|||
T Consensus 207 a~l~ITHDl~Vva~~aDrv 225 (539)
T COG1123 207 AVLFITHDLGVVAELADRV 225 (539)
T ss_pred EEEEEcCCHHHHHHhcCeE
Confidence 678899999999986
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=268.14 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=151.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|++
T Consensus 3 ~~l~~~~l~~~~~~~-~~-----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~---- 72 (251)
T PRK14251 3 NIISAKDVHLSYGNY-EA-----LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN---- 72 (251)
T ss_pred ceEEEEeeEEEECCe-ee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE----
Confidence 379999999999754 34 99999999999999999999999999999999998621011379999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.++. .|+.+|+.+...... .. ....+++.
T Consensus 73 ------------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14251 73 ------------------IYGSKMDLVELRKE-------VGMVFQQPTPFP--FSVYDNVAYGLKIAGVKDKELIDQRVE 125 (251)
T ss_pred ------------------cccccchHHHhhcc-------EEEEecCCccCC--CcHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 221 122233444 999999988774 599999986532211 11 12234566
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++... ... +... .+||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 126 ~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 196 (251)
T PRK14251 126 ESLKQAAIWKETKDNL-DRNA--------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196 (251)
T ss_pred HHHHHcCCCcchHHHh-ccCh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcC
Confidence 77888776310 000 1222 6899999999999999999999999999999 9999999999999987432
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 197 ~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 197 YTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred CeEEEEECCHHHHHhhcCEE
Confidence 456666666666764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=270.91 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=152.2
Q ss_pred CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 67 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 67 ~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
+..++|+++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 16 ~~~~~l~~~nl~~~~~~~-~~-----l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~- 88 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGF-LA-----LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN- 88 (274)
T ss_pred CCCceEEEeeEEEEeCCe-EE-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEe-
Confidence 345689999999999754 34 99999999999999999999999999999999998632111268999999976
Q ss_pred ceeeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 224 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ 224 (317)
+.. .....+++. |+|+||++.+++ .|+.+|+.+............+.+
T Consensus 89 ---------------------l~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~~nl~~~~~~~~~~~~~~~~~ 138 (274)
T PRK14265 89 ---------------------IYDSQINSVKLRRQ-------VGMVFQRPNPFP--KSIYENIAFAPRANGYKGNLDELV 138 (274)
T ss_pred ---------------------cccccchhHHHhhc-------EEEEccCCcccc--ccHHHHHHhHHHhcCchHHHHHHH
Confidence 221 122233333 999999987765 399999987532211111123345
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 139 ~~~l~~~~l~~~l~~~~-~~~~--------~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 209 (274)
T PRK14265 139 EDSLRRAAIWEEVKDKL-KEKG--------TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209 (274)
T ss_pred HHHHHHcccchhhHHHh-cCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 56677776521 1111 2222 6899999999999999999999999999999 999999999999998853
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+||+
T Consensus 210 ~~tiii~sH~~~~~~~~~d~i 230 (274)
T PRK14265 210 QYTIIMVTHNMQQASRVADWT 230 (274)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 2 456666666667764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=267.81 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=151.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++...+
T Consensus 5 ~~l~~~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (258)
T PRK11701 5 PLLSVRGLTKLYGPR-KG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQLR 73 (258)
T ss_pred ceEEEeeeEEEcCCc-ee-----eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcccccc
Confidence 479999999999754 34 999999999999999999999999999999999999 9999999999741000
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhh-ccCC-CChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLK-SMEG-DSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~-~~~~-~~~~~~~~~~~ 226 (317)
.+...+...+++ .....++|++|++. .+....|+.+|+.+.. .... ......+++.+
T Consensus 74 -----------------~i~~~~~~~~~~---~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 133 (258)
T PRK11701 74 -----------------DLYALSEAERRR---LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGD 133 (258)
T ss_pred -----------------ccccCCHHHHHH---HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 011222222111 01123999999974 3444567888886432 1111 11223455677
Q ss_pred HHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 227 VATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 227 ~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
+++.+++.. .. +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 134 ~l~~~~l~~~~~---~~~~--------~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 202 (258)
T PRK11701 134 WLERVEIDAARI---DDLP--------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG 202 (258)
T ss_pred HHHHcCCChhHH---hCCC--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 888888631 11 2222 6899999999999999999999999999999 9999999999999987642
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 203 ~tii~isH~~~~~~~~~d~i 222 (258)
T PRK11701 203 LAVVIVTHDLAVARLLAHRL 222 (258)
T ss_pred cEEEEEeCCHHHHHHhcCEE
Confidence 456666666666664
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=293.59 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=155.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|++++|++. .+ |+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 4 ~~l~~~~l~~~~~~~-~i-----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~---- 68 (510)
T PRK09700 4 PYISMAGIGKSFGPV-HA-----LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNIN---- 68 (510)
T ss_pred ceEEEeeeEEEcCCe-EE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEE----
Confidence 579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c---CCC---C-hHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M---EGD---S-DVEK 221 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~---~~~---~-~~~~ 221 (317)
+...+....++ ..++|++|++.++. .+|+.+|+.+... . ... . ....
T Consensus 69 ------------------i~~~~~~~~~~------~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 123 (510)
T PRK09700 69 ------------------YNKLDHKLAAQ------LGIGIIYQELSVID-ELTVLENLYIGRHLTKKVCGVNIIDWREMR 123 (510)
T ss_pred ------------------CCCCCHHHHHH------CCeEEEeecccccC-CCcHHHHhhhccccccccccccccCHHHHH
Confidence 33333322211 23999999986554 5799999986431 1 010 1 1234
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++.++++.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 124 ~~~~~~l~~~gl~~~~---~~~~--------~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 192 (510)
T PRK09700 124 VRAAMMLLRVGLKVDL---DEKV--------ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR 192 (510)
T ss_pred HHHHHHHHHcCCCCCc---ccch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 5677788888874221 3344 7999999999999999999999999999999 99999999999999986
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+...+|||
T Consensus 193 ~~g~tiiivsHd~~~~~~~~d~v 215 (510)
T PRK09700 193 KEGTAIVYISHKLAEIRRICDRY 215 (510)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEE
Confidence 42 567777777777764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=293.00 Aligned_cols=195 Identities=15% Similarity=0.123 Sum_probs=156.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--- 74 (510)
T PRK15439 9 PPLLCARSISKQYSGV-EV-----LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNP--- 74 (510)
T ss_pred CceEEEEeEEEEeCCc-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 4589999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+...+++ ..+||++|++.++. .+|+.+|+.+.... .....+++.+++
T Consensus 75 -------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~tv~e~l~~~~~~---~~~~~~~~~~~l 125 (510)
T PRK15439 75 -------------------CARLTPAKAHQ------LGIYLVPQEPLLFP-NLSVKENILFGLPK---RQASMQKMKQLL 125 (510)
T ss_pred -------------------CCCCCHHHHHh------CCEEEEeccCccCC-CCcHHHHhhccccc---chHHHHHHHHHH
Confidence 33333332221 13999999986544 58999999875321 122345677888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 126 ~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (510)
T PRK15439 126 AALGCQLDL---DSSA--------GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194 (510)
T ss_pred HHcCCCccc---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 888874221 3333 7999999999999999999999999999999 9999999999999998542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..++|||
T Consensus 195 ivtHd~~~~~~~~d~i 210 (510)
T PRK15439 195 FISHKLPEIRQLADRI 210 (510)
T ss_pred EEeCCHHHHHHhCCEE
Confidence 556777777777764
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=268.18 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=152.0
Q ss_pred CCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.|+++|++++|++. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|++
T Consensus 17 ~~~i~~~~l~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~-- 84 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPV-----LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGID-- 84 (257)
T ss_pred CceEEEEEEEEEeCCCCCcc-----eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEE--
Confidence 5679999999999753 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+...+...+++. ++|++|++.+++ .|+.+|+..... . ....+..+
T Consensus 85 --------------------i~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~~nl~~~~~---~---~~~~~~~~ 129 (257)
T cd03288 85 --------------------ISKLPLHTLRSR-------LSIILQDPILFS--GSIRFNLDPECK---C---TDDRLWEA 129 (257)
T ss_pred --------------------hhhCCHHHHhhh-------EEEECCCCcccc--cHHHHhcCcCCC---C---CHHHHHHH
Confidence 444555555555 999999997765 489998753211 1 11224445
Q ss_pred HHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.+++. ...++.++.+.+..++ ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 130 l~~~~l~~~~~~~~~~l~~~~~~~~--~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~t 207 (257)
T cd03288 130 LEIAQLKNMVKSLPGGLDAVVTEGG--ENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRT 207 (257)
T ss_pred HHHhCcHHHHhhcccccCcEeccCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCE
Confidence 5555542 1123445666665555 7999999999999999999999999999999 9999999999999886321
Q ss_pred ---cCCCcchhhcccCC
Q 021147 303 ---ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~ 316 (317)
..|++..+.+ +||
T Consensus 208 iii~sh~~~~~~~-~dr 223 (257)
T cd03288 208 VVTIAHRVSTILD-ADL 223 (257)
T ss_pred EEEEecChHHHHh-CCE
Confidence 3444444443 554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=267.48 Aligned_cols=202 Identities=19% Similarity=0.234 Sum_probs=149.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+|+|+|+++|.....++|+|+++|.+
T Consensus 4 ~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~----- 72 (252)
T PRK14272 4 LLSAQDVNIYYGDK-QA-----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD----- 72 (252)
T ss_pred EEEEeeeEEEECCE-Ee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE-----
Confidence 68999999999753 34 99999999999999999999999999999999999832000148999999976
Q ss_pred EecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~ 226 (317)
+.. .+...+++. ++|++|++.++. .+|+.+|+.+...... ......+.+.+
T Consensus 73 -----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~ 127 (252)
T PRK14272 73 -----------------IYGPRVDPVAMRRR-------VGMVFQKPNPFP-TMSVFDNVVAGLKLAGIRDRDHLMEVAER 127 (252)
T ss_pred -----------------cccCccCHHHhhce-------eEEEeccCccCc-CCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 222 222233444 999999987554 4799999986532211 11122233444
Q ss_pred HHHHcCCCc-c-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY-L-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~-~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. . ... +... .+||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 198 (252)
T PRK14272 128 SLRGAALWDEVKDRL-KTPA--------TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198 (252)
T ss_pred HHHHcCcchhhhhhh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 455555421 0 111 2233 7899999999999999999999999999999 9999999999999987532
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|||
T Consensus 199 tiii~sH~~~~~~~~~d~i 217 (252)
T PRK14272 199 TIIIVTHNMHQAARVSDTT 217 (252)
T ss_pred eEEEEeCCHHHHHHhCCEE
Confidence 456777777777764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=267.04 Aligned_cols=203 Identities=15% Similarity=0.218 Sum_probs=151.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+.|+++|++++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|++++....|++|+|+++|++
T Consensus 3 ~~l~~~nl~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 72 (252)
T PRK14256 3 NKVKLEQLNVHFGKN-HA-----VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD---- 72 (252)
T ss_pred cEEEEEEEEEEeCCe-eE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE----
Confidence 469999999999753 34 99999999999999999999999999999999998521001368999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|+||++.++. ..|+.+|+.+...... ......+++.
T Consensus 73 ------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14256 73 ------------------IYDRGVDPVSIRRR-------VGMVFQKPNPFP-AMSIYDNVIAGYKLNGRVNRSEADEIVE 126 (252)
T ss_pred ------------------cccccCChHHhhcc-------EEEEecCCCCCC-cCcHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 221 122233444 999999987554 4799999986432211 1122234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 127 ~~l~~~~l~~~~~~~~-~~~~--------~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 197 (252)
T PRK14256 127 SSLKRVALWDEVKDRL-KSNA--------MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197 (252)
T ss_pred HHHHHcCCchhhhHHh-hCCc--------CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 7788888631 0111 1222 6899999999999999999999999999999 9999999999999998542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+||+
T Consensus 198 ~tiiivsH~~~~~~~~~d~i 217 (252)
T PRK14256 198 YTIIIVTHNMQQAARVSDYT 217 (252)
T ss_pred CcEEEEECCHHHHHhhCCEE
Confidence 445566666666663
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=269.63 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=150.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++.. + |+|+||+|++|++++|+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 22 ~~~l~~~~l~~~~~~~~-i-----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--- 92 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH-A-----LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN--- 92 (271)
T ss_pred ceEEEEeeeEEEECCcc-e-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE---
Confidence 45899999999997543 3 99999999999999999999999999999999998621112589999999976
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CCh-HHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSD-VEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~-~~~~~~ 224 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+...... ... ...+.+
T Consensus 93 -------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~ 144 (271)
T PRK14238 93 -------------------IFDKSYSVEELRTN-------VGMVFQKPNPFP--KSIYDNVTYGPKIHGIKDKKTLDEIV 144 (271)
T ss_pred -------------------cccccccHHHHhhh-------EEEEecCCcccc--ccHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 22 1223334444 999999988775 499999987542211 111 112334
Q ss_pred HHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++. ..... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 145 ~~~l~~~~~~~~l~~~~-~~~~--------~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 145 EKSLRGAAIWDELKDRL-HDNA--------YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred HHHHHHcCCcchHHHHH-hcCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 5556665431 11111 1222 6899999999999999999999999999999 999999999999998754
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+..++||+
T Consensus 216 ~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 216 DYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred CCEEEEEEcCHHHHHHhCCEE
Confidence 2 346666666677764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=280.31 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=147.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++ ||+++|++ .. + |+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~-~l~k~~~~--~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~----- 61 (352)
T PRK11144 1 MLEL-NFKQQLGD--LC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRV----- 61 (352)
T ss_pred CeEE-EEEEEeCC--EE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 5888 99999964 22 4 8999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+... .....++. ++|++|++.+|+ .+|+++|+.++.. ....+++.+
T Consensus 62 -----------------~~~~~~~~~~~~~~~~-------i~~v~q~~~l~~-~~tv~enl~~~~~-----~~~~~~~~~ 111 (352)
T PRK11144 62 -----------------LFDAEKGICLPPEKRR-------IGYVFQDARLFP-HYKVRGNLRYGMA-----KSMVAQFDK 111 (352)
T ss_pred -----------------ccccccccccchhhCC-------EEEEcCCcccCC-CCcHHHHHHhhhh-----hhhHHHHHH
Confidence 2111 11122333 999999987664 5899999987532 122345778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 112 ~l~~~gl~~~~---~~~~--------~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 112 IVALLGIEPLL---DRYP--------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred HHHHcCCchhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 89998874221 2233 6999999999999999999999999999999 9999999999999988653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++||+
T Consensus 181 tii~vTHd~~~~~~~~d~i 199 (352)
T PRK11144 181 PILYVSHSLDEILRLADRV 199 (352)
T ss_pred eEEEEecCHHHHHHhCCEE
Confidence 335555566666654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.27 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=152.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|+++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~--- 93 (272)
T PRK14236 23 QTALEVRNLNLFYGDK-QA-----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN--- 93 (272)
T ss_pred CcEEEEEEEEEEECCe-eE-----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE---
Confidence 4589999999999754 34 99999999999999999999999999999999998721111489999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~~ 224 (317)
+.. .+...+++. ++|++|++.++.. |+.+|+.+....... . ....+++
T Consensus 94 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~~--tv~enl~~~~~~~~~~~~~~~~~~~ 145 (272)
T PRK14236 94 -------------------IYDKKVDVAELRRR-------VGMVFQRPNPFPK--SIYENVVYGLRLQGINNRRVLDEAV 145 (272)
T ss_pred -------------------CcccccCHHHHhcc-------EEEEecCCccCcc--cHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 221 222334444 9999999877763 999999865322211 1 2223556
Q ss_pred HHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++... ... +... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 146 ~~~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 216 (272)
T PRK14236 146 ERSLRGAALWDEVKDRL-HENA--------FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS 216 (272)
T ss_pred HHHHHHcCCChhHHHHh-hCCc--------ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 777888776311 111 2222 6899999999999999999999999999999 999999999999999854
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+|||
T Consensus 217 ~~tiiivtH~~~~~~~~~d~i 237 (272)
T PRK14236 217 KYTIVIVTHNMQQAARVSDYT 237 (272)
T ss_pred CCeEEEEeCCHHHHHhhCCEE
Confidence 2 345556666666654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=266.25 Aligned_cols=203 Identities=18% Similarity=0.189 Sum_probs=149.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+++||+|.+||+++|+|+||||||||+++|+|++++....+++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--- 73 (252)
T PRK14255 3 KKIITSSDVHLFYGKF-EA-----LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN--- 73 (252)
T ss_pred cceEEEEeEEEEECCe-eE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE---
Confidence 4579999999999753 34 99999999999999999999999999999999997421000258999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CC-hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DS-DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~-~~~~~~~ 224 (317)
+.. .+...+++ .++|++|++.+++ .|+.+|+.+...... .. ....+++
T Consensus 74 -------------------~~~~~~~~~~~~~-------~i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~ 125 (252)
T PRK14255 74 -------------------IYAPNEDVVQLRK-------QVGMVFQQPNPFP--FSIYENVIYGLRLAGVKDKAVLDEAV 125 (252)
T ss_pred -------------------cccccccHHHhcC-------eEEEEECCCccCC--CcHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 221 12222333 3999999987775 599999987532211 11 1122345
Q ss_pred HHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 225 QIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 225 ~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.++++.+++.. .... +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 126 ~~~l~~~~l~~~i~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14255 126 ETSLKQAAIWDEVKDHL-HESA--------LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD 196 (252)
T ss_pred HHHHHHcCCccchhhHH-hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh
Confidence 55666666521 0001 1222 6899999999999999999999999999999 999999999999998854
Q ss_pred h-----cCCCcchhhcccCCC
Q 021147 302 H-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-----~~~~~~~~~~~~~~~ 317 (317)
. ..|+...+...+|||
T Consensus 197 ~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 197 QYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred CCEEEEEECCHHHHHHhCCEE
Confidence 2 446666666666664
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=260.50 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=146.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++ ||+++|++. . + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~-~l~~~~~~~--~-----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 60 (214)
T cd03297 1 MLCV-DIEKRLPDF--T-----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTV----- 60 (214)
T ss_pred Ccee-eeeEecCCe--e-----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe-----
Confidence 3566 999999763 2 6 99999999 9999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+... +....++ .++|++|++.+++ .+|+.+|+.+..... ......+++.+
T Consensus 61 -----------------~~~~~~~~~~~~~~~-------~i~~~~q~~~~~~-~~t~~~~l~~~~~~~-~~~~~~~~~~~ 114 (214)
T cd03297 61 -----------------LFDSRKKINLPPQQR-------KIGLVFQQYALFP-HLNVRENLAFGLKRK-RNREDRISVDE 114 (214)
T ss_pred -----------------cccccchhhhhhHhh-------cEEEEecCCccCC-CCCHHHHHHHHHhhC-CHHHHHHHHHH
Confidence 2111 1112233 3999999987553 579999998653221 11223445677
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||+||+||++||||++.+|+++||||||+ ||+.+++.+.+.++++.+.
T Consensus 115 ~l~~~~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 115 LLDLLGLDHLL---NRYP--------AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred HHHHcCCHhHh---hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 88888874221 2333 6899999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 184 tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 184 PVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred EEEEEecCHHHHHHhcCEE
Confidence 345566665666653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=270.71 Aligned_cols=194 Identities=15% Similarity=0.214 Sum_probs=146.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|+++..+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~~~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 70 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTA-----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQP----- 70 (272)
T ss_pred eEEEEeEEEEecCCcEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 69999999999643444 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccc-cchhhHHHHHHhhhcc-----CCCChHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV-NFVIFVVDGLAVLKSM-----EGDSDVEKQYN 224 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~-~~~~tv~eni~~~~~~-----~~~~~~~~~~~ 224 (317)
+.. ..+ ...++|+||++.+. ....++.+|+.+.... ........+++
T Consensus 71 -----------------i~~----~~~------~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 123 (272)
T PRK15056 71 -----------------TRQ----ALQ------KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123 (272)
T ss_pred -----------------hHH----hhc------cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHH
Confidence 210 111 11389999987541 2234677777543110 01112234456
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... ...+ .+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~~~l~~~gl~~~~---~~~~--------~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g 192 (272)
T PRK15056 124 TAALARVDMVEFR---HRQI--------GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEG 192 (272)
T ss_pred HHHHHHcCChhHh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC
Confidence 6778888874221 2333 6899999999999999999999999999999 9999999999999988542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 193 ~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 193 KTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 345566666666653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=266.74 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=152.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+|+||+|++|++++|+|+||||||||+++|+|+++|+...+.+|+|.++|++
T Consensus 6 ~~l~~~nl~~~~~~~-~i-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~---- 75 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ-KI-----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN---- 75 (261)
T ss_pred ceEEEeeEEEEeCCe-eE-----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE----
Confidence 479999999999754 33 99999999999999999999999999999999999943333358999999875
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~~~ 225 (317)
+. ..+...+++. ++|++|++.++. .|+.+|+.+....... . ....+.+.
T Consensus 76 ------------------i~~~~~~~~~~~~~-------i~~~~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 128 (261)
T PRK14258 76 ------------------IYERRVNLNRLRRQ-------VSMVHPKPNLFP--MSVYDNVAYGVKIVGWRPKLEIDDIVE 128 (261)
T ss_pred ------------------hhccccchHHhhcc-------EEEEecCCccCc--ccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 21 1122233444 999999987665 6999999865322111 1 12234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... ..||+||+||+++||+++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~ 199 (261)
T PRK14258 129 SALKDADLWDEIKHKI-HKSA--------LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR 199 (261)
T ss_pred HHHHHcCCcchhhhHh-cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 7788887621 1111 2232 6899999999999999999999999999999 9999999999999987532
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|+|
T Consensus 200 ~~~tiiivsH~~~~i~~~~d~i 221 (261)
T PRK14258 200 SELTMVIVSHNLHQVSRLSDFT 221 (261)
T ss_pred CCCEEEEEECCHHHHHHhcCEE
Confidence 456677777777764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=265.75 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=149.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~-~i-----l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 72 (251)
T PRK14249 3 PKIKIRGVNFFYHKH-QV-----LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN---- 72 (251)
T ss_pred ceEEEEEEEEEECCe-eE-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE----
Confidence 579999999999754 34 99999999999999999999999999999999999933222347999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~~~ 225 (317)
+.. .+...+++. ++|++|++.+++ .|+.+|+.+....... . ....+++.
T Consensus 73 ------------------~~~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (251)
T PRK14249 73 ------------------IYSPNLDVVNLRKR-------VGMVFQQPNPFP--KSIFDNVAFGPRMLGTTAQSRLDEVVE 125 (251)
T ss_pred ------------------ccccccChHHhhce-------EEEEecCCccCc--CcHHHHHhhHHHhcCCChhhHHHHHHH
Confidence 221 222334444 999999998775 3999999875432111 1 11234455
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. ..+. +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~~l~~~~l~~~l~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 196 (251)
T PRK14249 126 KSLRQAALWDEVKDNL-HKSG--------LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN 196 (251)
T ss_pred HHHHHhCCchhhhhHh-hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5667666531 1111 1222 6899999999999999999999999999999 9999999999999987421
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 197 ~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 197 YTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred CEEEEEeCCHHHHHhhCCEE
Confidence 345556666666653
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=251.98 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=147.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++++.+.-++. .+ |+++||++.+||+++|+||||||||||+|+++.|+. |++|.++|.|++
T Consensus 4 le~kq~~y~a~~a-~i-----l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~------ 66 (223)
T COG4619 4 LELKQVGYLAGDA-KI-----LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGED------ 66 (223)
T ss_pred hHHHHHHhhcCCC-ee-----ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCcc------
Confidence 4455555433333 33 999999999999999999999999999999999999 999999999998
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
++.++++.+|++ |+|+-|.|.+|.. ||.||+.|...... ...+.+...+.+..+
T Consensus 67 ----------------vs~~~pea~Rq~-------VsY~~Q~paLfg~--tVeDNlifP~~~r~-rr~dr~aa~~llar~ 120 (223)
T COG4619 67 ----------------VSTLKPEAYRQQ-------VSYCAQTPALFGD--TVEDNLIFPWQIRN-RRPDRAAALDLLARF 120 (223)
T ss_pred ----------------ccccChHHHHHH-------HHHHHcCcccccc--chhhccccchHHhc-cCCChHHHHHHHHHc
Confidence 778999999998 9999999999986 99999987542211 223455677888888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+++...+ ...+ .+||||++||++++|-|...|++|+|||||| ||+.+++.+.++|.++..
T Consensus 121 ~l~~~~L--~k~i--------t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 121 ALPDSIL--TKNI--------TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181 (223)
T ss_pred CCchhhh--cchh--------hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhh
Confidence 8864333 2333 6999999999999999999999999999999 999999999999988863
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=264.83 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=149.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++.. + |+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~~l~~~~l~~~~~~~~-~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~-- 68 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK-G-----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGA-- 68 (253)
T ss_pred ceEEEeeeEEEeCCce-E-----eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccc--
Confidence 4799999999997543 3 999999999999999999999999999999999999 99999999986410
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhh-ccC-CCChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLK-SME-GDSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~-~~~-~~~~~~~~~~~~ 226 (317)
...+...+.....+ .+.+.++|++|++.. +....++.+|+.+.. ... ........++.+
T Consensus 69 ---------------~~~~~~~~~~~~~~---~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (253)
T TIGR02323 69 ---------------ELELYQLSEAERRR---LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHD 130 (253)
T ss_pred ---------------ccccccCCHHHHHH---hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 00011222221110 112249999998742 334457788875421 111 111123455677
Q ss_pred HHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 227 VATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 227 ~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
+++.+++. ... +..+ ..|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 131 ~l~~l~l~~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 199 (253)
T TIGR02323 131 WLEEVEIDPTRI---DDLP--------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199 (253)
T ss_pred HHHHcCCChhhh---hcCc--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 88888873 111 2333 7899999999999999999999999999999 9999999999999987543
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 200 ~tii~vsH~~~~~~~~~d~~ 219 (253)
T TIGR02323 200 LAVIIVTHDLGVARLLAQRL 219 (253)
T ss_pred CEEEEEeCCHHHHHHhcCEE
Confidence 445666666666653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=261.79 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=148.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 l~l~~v~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (223)
T TIGR03740 1 LETKNLSKRFGKQ-TA-----VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHP------ 63 (223)
T ss_pred CEEEeEEEEECCE-EE-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEe------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... .+ .++|+||++.++. .+|+++|+.+........ ..++.++++.+
T Consensus 64 ----------------~~~~~----~~-------~~~~~~q~~~~~~-~~t~~~~~~~~~~~~~~~---~~~~~~~l~~~ 112 (223)
T TIGR03740 64 ----------------WTRKD----LH-------KIGSLIESPPLYE-NLTARENLKVHTTLLGLP---DSRIDEVLNIV 112 (223)
T ss_pred ----------------ccccc----cc-------cEEEEcCCCCccc-cCCHHHHHHHHHHHcCCC---HHHHHHHHHHc
Confidence 21111 11 2999999886553 479999998654221111 23567788888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
++.... .... .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 113 ~l~~~~---~~~~--------~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 113 DLTNTG---KKKA--------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSS 181 (223)
T ss_pred CCcHHH---hhhH--------hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 874221 2223 6899999999999999999999999999999 9999999999999988542 45
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+..++...+||+
T Consensus 182 H~~~~~~~~~d~i 194 (223)
T TIGR03740 182 HILSEVQQLADHI 194 (223)
T ss_pred CCHHHHHHhcCEE
Confidence 6666666667664
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=261.98 Aligned_cols=192 Identities=12% Similarity=0.081 Sum_probs=151.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+++|++. .+ ++++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~i-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~------ 63 (232)
T cd03300 1 IELENVSKFYGGF-VA-----LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKD------ 63 (232)
T ss_pred CEEEeEEEEeCCe-ee-----eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|++|++.++. .+|+.+|+.+....... .....+++.++++.
T Consensus 64 ----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~ 117 (232)
T cd03300 64 ----------------ITNLPP--HKR-------PVNTVFQNYALFP-HLTVFENIAFGLRLKKLPKAEIKERVAEALDL 117 (232)
T ss_pred ----------------cCcCCh--hhc-------ceEEEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 322222 122 3999999987654 57999999765322221 22334566778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 118 VQLEGYA---NRKP--------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred cCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8874221 2222 6899999999999999999999999999999 9999999999999988653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+|++
T Consensus 187 ~sh~~~~~~~~~d~i 201 (232)
T cd03300 187 VTHDQEEALTMSDRI 201 (232)
T ss_pred EeCCHHHHHHhcCEE
Confidence 346666666667764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=254.81 Aligned_cols=162 Identities=14% Similarity=0.211 Sum_probs=134.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|++++| + |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~---- 63 (182)
T cd03215 3 PVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKP---- 63 (182)
T ss_pred cEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE----
Confidence 479999999999 3 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+..++. ...++ .++|++|++. .+...+|+++|+.+...
T Consensus 64 ------------------~~~~~~~~~~~~-------~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------- 104 (182)
T cd03215 64 ------------------VTRRSPRDAIRA-------GIAYVPEDRKREGLVLDLSVAENIALSSL-------------- 104 (182)
T ss_pred ------------------CCccCHHHHHhC-------CeEEecCCcccCcccCCCcHHHHHHHHhh--------------
Confidence 333332 22233 3999999852 34445688888864311
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.++++.+.
T Consensus 105 ----------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 156 (182)
T cd03215 105 ----------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156 (182)
T ss_pred ----------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 89999999999999999999999999999 9999999999999988542
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
+.|+...+.+.+|+|
T Consensus 157 iii~sh~~~~~~~~~d~v 174 (182)
T cd03215 157 VLLISSELDELLGLCDRI 174 (182)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 446666676777764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=251.65 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=131.2
Q ss_pred eEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|++++|++. ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (173)
T cd03246 1 LEVENVSFRYPGAEPPV-----LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGAD----- 65 (173)
T ss_pred CEEEEEEEEcCCCCCcc-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEE-----
Confidence 5789999999753 233 999999999999999999999999999999999999 999999999976
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.+++ .|+.+|+
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~~~l----------------------- 96 (173)
T cd03246 66 -----------------ISQWDPNELGDH-------VGYLPQDDELFS--GSIAENI----------------------- 96 (173)
T ss_pred -----------------cccCCHHHHHhh-------eEEECCCCcccc--CcHHHHC-----------------------
Confidence 444454445544 999999986654 3777765
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 97 ------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 152 (173)
T cd03246 97 ------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 (173)
T ss_pred ------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 89999999999999999999999999999 9999999999999988542 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+. .+|+|
T Consensus 153 sh~~~~~~-~~d~v 165 (173)
T cd03246 153 AHRPETLA-SADRI 165 (173)
T ss_pred eCCHHHHH-hCCEE
Confidence 45555553 46653
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=290.09 Aligned_cols=196 Identities=13% Similarity=0.124 Sum_probs=154.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 3 ~~l~~~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~---- 67 (501)
T PRK11288 3 PYLSFDGIGKTFPGV-KA-----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQE---- 67 (501)
T ss_pred ceEEEeeeEEEECCE-EE-----EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEE----
Confidence 579999999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CC--CChHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EG--DSDVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~--~~~~~~~~~ 224 (317)
+...+. ..+++ .|||++|++.++. .+|+.+|+.+.... .. ......+++
T Consensus 68 ------------------i~~~~~~~~~~~-------~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (501)
T PRK11288 68 ------------------MRFASTTAALAA-------GVAIIYQELHLVP-EMTVAENLYLGQLPHKGGIVNRRLLNYEA 121 (501)
T ss_pred ------------------CCCCCHHHHHhC-------CEEEEEechhccC-CCCHHHHHHhcccccccCCCCHHHHHHHH
Confidence 322222 12233 3999999986554 57999999875321 11 112234567
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.... ...+ .+|||||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 122 ~~~l~~~~l~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 190 (501)
T PRK11288 122 REQLEHLGVDIDP---DTPL--------KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190 (501)
T ss_pred HHHHHHcCCCCCc---CCch--------hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 7888888874221 2333 7999999999999999999999999999999 9999999999999987542
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 191 ~tiiiitHd~~~~~~~~d~i 210 (501)
T PRK11288 191 RVILYVSHRMEEIFALCDAI 210 (501)
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 456666666777764
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=257.34 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=136.7
Q ss_pred eEEEeEEEEcCCC----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 72 TDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 72 I~~~nls~~y~~~----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
|+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~i-----l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g~--- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT-----LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPGS--- 67 (204)
T ss_pred CEEeEEEEecCCCCccccce-----eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcCE---
Confidence 5799999999754 234 999999999999999999999999999999999999 99999998762
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
|+|++|++.+++ .|+++|+.+.... . .++..++
T Consensus 68 ---------------------------------------i~~~~q~~~l~~--~t~~enl~~~~~~---~---~~~~~~~ 100 (204)
T cd03250 68 ---------------------------------------IAYVSQEPWIQN--GTIRENILFGKPF---D---EERYEKV 100 (204)
T ss_pred ---------------------------------------EEEEecCchhcc--CcHHHHhccCCCc---C---HHHHHHH
Confidence 788888877664 5899999864321 1 1123444
Q ss_pred HHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHHHHh-
Q 021147 228 ATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYCLEH- 302 (317)
Q Consensus 228 a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l~~~- 302 (317)
++.+++. ...++.++.+.+.... ..||+||+||+++|||++.+|+++|||||++ ||+.+.+.+.+ +++++.+.
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~ 178 (204)
T cd03250 101 IKACALEPDLEILPDGDLTEIGEKG--INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN 178 (204)
T ss_pred HHHcCcHHHHHhccCcccceecCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC
Confidence 5555541 1223334444443333 6899999999999999999999999999999 99999998887 45554332
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|....+.. +|+
T Consensus 179 ~tvi~~sh~~~~~~~-~d~ 196 (204)
T cd03250 179 KTRILVTHQLQLLPH-ADQ 196 (204)
T ss_pred CEEEEEeCCHHHHhh-CCE
Confidence 2344444444 554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=280.13 Aligned_cols=187 Identities=19% Similarity=0.228 Sum_probs=144.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|++.. ..+...+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~------------------~~i~~~~ 96 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGS------------------IDVANCD 96 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecc------------------cccccCC
Confidence 999999999999999999999999999999999999 99999999996200 0023333
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
...+++. ..+.++|+||++.+++ .+|+.+|+.++..... ......+++.++++.+++... .+.+.
T Consensus 97 ~~~l~~~---r~~~i~~vfQ~~~l~p-~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~--~~~~~-------- 162 (382)
T TIGR03415 97 AATLRRL---RTHRVSMVFQKFALMP-WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW--ADKKP-------- 162 (382)
T ss_pred HHHHHHH---hcCCEEEEECCCcCCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh--hcCCh--------
Confidence 3333211 1134999999998665 5799999998753322 223334567788999997422 22333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++|||||+.+|+++||||||+ ||+.++..+++.|.++.+. ..|++..+...+|||
T Consensus 163 -~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI 235 (382)
T TIGR03415 163 -GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI 235 (382)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988653 456677776777764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=252.39 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=131.2
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++||+++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (173)
T cd03230 1 IEVRNLSKRYGKK-TA-----LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKD------ 63 (173)
T ss_pred CEEEEEEEEECCe-ee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+.... ..+++. ++|++|++.++. ..|+.+|+.
T Consensus 64 ----------------~~~~~-~~~~~~-------i~~~~q~~~~~~-~~tv~~~~~----------------------- 95 (173)
T cd03230 64 ----------------IKKEP-EEVKRR-------IGYLPEEPSLYE-NLTVRENLK----------------------- 95 (173)
T ss_pred ----------------cccch-Hhhhcc-------EEEEecCCcccc-CCcHHHHhh-----------------------
Confidence 32222 233333 999999986554 357777753
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cC
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------AD 304 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~ 304 (317)
||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..
T Consensus 96 -----------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 96 -----------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred -----------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 89999999999999999999999999999 9999999999999998643 34
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+...+|++
T Consensus 153 h~~~~~~~~~d~i 165 (173)
T cd03230 153 HILEEAERLCDRV 165 (173)
T ss_pred CCHHHHHHhCCEE
Confidence 5566666666653
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=279.07 Aligned_cols=189 Identities=17% Similarity=0.143 Sum_probs=147.5
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
++ ||+++|++. . + ++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~-~l~~~~~~~--~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~------- 60 (354)
T TIGR02142 2 SA-RFSKRLGDF--S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRT------- 60 (354)
T ss_pred EE-EEEEEECCE--E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-------
Confidence 44 899999642 2 7 8999999999999999999999999999999999 999999999986
Q ss_pred cccCCCCcccccceeeccC----ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 153 QEYTIPRGVRHGELVIRRS----DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+... .....++. ++|++|++.+|+ .+|+.+|+.++..... .....+++.+++
T Consensus 61 ---------------i~~~~~~~~~~~~~~~-------i~~v~q~~~l~~-~~tv~enl~~~~~~~~-~~~~~~~~~~~l 116 (354)
T TIGR02142 61 ---------------LFDSRKGIFLPPEKRR-------IGYVFQEARLFP-HLSVRGNLRYGMKRAR-PSERRISFERVI 116 (354)
T ss_pred ---------------CccCccccccchhhCC-------eEEEecCCccCC-CCcHHHHHHHHhhccC-hhHHHHHHHHHH
Confidence 2111 11122333 999999987664 5799999987643211 122344577888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 117 ~~~gL~~~~---~~~~--------~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 185 (354)
T TIGR02142 117 ELLGIGHLL---GRLP--------GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185 (354)
T ss_pred HHcCChhHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 888874221 2333 6999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|+|
T Consensus 186 iivtH~~~~~~~~~d~i 202 (354)
T TIGR02142 186 LYVSHSLQEVLRLADRV 202 (354)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 446666666666664
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=265.75 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=148.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC----cCcEEEECcccC
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p----~~G~I~i~g~~~ 146 (317)
+|+++||+++| +. .+ |+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|+++|++
T Consensus 4 ~l~~~~l~~~~-~~-~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~- 70 (254)
T PRK10418 4 QIELRNIALQA-AQ-PL-----VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKP- 70 (254)
T ss_pred EEEEeCeEEEe-cc-ce-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCee-
Confidence 69999999999 33 34 999999999999999999999999999999999999 7 99999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
+...+ ..++ .++|++|++. .|....|+.+|+.+....... ....+++.
T Consensus 71 ---------------------i~~~~--~~~~-------~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 119 (254)
T PRK10418 71 ---------------------VAPCA--LRGR-------KIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLT 119 (254)
T ss_pred ---------------------ccccc--cccc-------eEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHH
Confidence 22111 1112 3999999975 355556888887543211111 12235677
Q ss_pred HHHHHcCCCccc-CCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 226 IVATTFNCPYLS-FRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~-l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++++.+++.... .. +... .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~~l~~~~l~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 120 AALEAVGLENAARVL-KLYP--------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHcCCCChhhhh-hcCC--------cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 888888874210 00 2222 6899999999999999999999999999999 9999999999999988653
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|+...+.+.+|||
T Consensus 191 g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 191 ALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred CcEEEEEecCHHHHHHhCCEE
Confidence 446666666667764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=288.97 Aligned_cols=190 Identities=15% Similarity=0.090 Sum_probs=150.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.||+++||+++|++.. + |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~-i-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~---- 66 (490)
T PRK10938 2 SSLQISQGTFRLSDTK-T-----LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSH---- 66 (490)
T ss_pred ceEEEEeEEEEcCCee-e-----cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcc----
Confidence 3799999999997543 4 999999999999999999999999999999999999 999999998865
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc--cc-----chhhHHHHHHhhhccCCCChHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK--VN-----FVIFVVDGLAVLKSMEGDSDVEKQ 222 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~--~~-----~~~tv~eni~~~~~~~~~~~~~~~ 222 (317)
+...+...+++. +||++|++.. +. ..+|+.+|+.+. ....+
T Consensus 67 ------------------~~~~~~~~~~~~-------i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 114 (490)
T PRK10938 67 ------------------ITRLSFEQLQKL-------VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-------VKDPA 114 (490)
T ss_pred ------------------cccCCHHHHHHH-------hceeccCcchhhcccchhhccccHHHhcccc-------hhHHH
Confidence 222333333333 9999997642 11 135677766432 12234
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++.... +..+ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+
T Consensus 115 ~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 183 (490)
T PRK10938 115 RCEQLAQQFGITALL---DRRF--------KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183 (490)
T ss_pred HHHHHHHHcCCHhhh---hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 577888888874222 3344 7999999999999999999999999999999 999999999999999864
Q ss_pred h------cCCCcchhhcccCCC
Q 021147 302 H------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+...+|+|
T Consensus 184 ~g~tvii~tH~~~~~~~~~d~v 205 (490)
T PRK10938 184 SGITLVLVLNRFDEIPDFVQFA 205 (490)
T ss_pred cCCeEEEEeCCHHHHHhhCCEE
Confidence 3 567777777778764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=253.97 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=132.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~~~l~~~~~~~-~~-----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~------ 63 (178)
T cd03229 1 LELKNVSKRYGQK-TV-----LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGED------ 63 (178)
T ss_pred CEEEEEEEEECCe-EE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+..++ ...+++. ++|++|++.++. ..|+.+|+.+.
T Consensus 64 ----------------~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~t~~~~l~~~------------------- 100 (178)
T cd03229 64 ----------------LTDLEDELPPLRRR-------IGMVFQDFALFP-HLTVLENIALG------------------- 100 (178)
T ss_pred ----------------ccccchhHHHHhhc-------EEEEecCCccCC-CCCHHHheeec-------------------
Confidence 33333 2333333 999999886443 35676665421
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.++++.+.
T Consensus 101 -------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 155 (178)
T cd03229 101 -------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155 (178)
T ss_pred -------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 89999999999999999999999999999 9999999999999988653
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 156 i~sH~~~~~~~~~d~i 171 (178)
T cd03229 156 LVTHDLDEAARLADRV 171 (178)
T ss_pred EEeCCHHHHHHhcCEE
Confidence 346666666666653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=262.63 Aligned_cols=192 Identities=18% Similarity=0.192 Sum_probs=150.6
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ |+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 i~i~~l~~~~~~~-~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~------ 63 (237)
T TIGR00968 1 IEIANISKRFGSF-QA-----LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQD------ 63 (237)
T ss_pred CEEEEEEEEECCe-ee-----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|+||++.++. ..|+.+|+.+...... ......+++.++++.
T Consensus 64 ----------------~~~~~~--~~~-------~i~~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~ 117 (237)
T TIGR00968 64 ----------------ATRVHA--RDR-------KIGFVFQHYALFK-HLTVRDNIAFGLEIRKHPKAKIKARVEELLEL 117 (237)
T ss_pred ----------------cCcCCh--hhc-------CEEEEecChhhcc-CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHH
Confidence 322221 122 3999999987554 5799999986543211 112234556778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... +... ..||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 118 ~~l~~~~---~~~~--------~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli 186 (237)
T TIGR00968 118 VQLEGLG---DRYP--------NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186 (237)
T ss_pred cCCHhHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8873211 2222 6899999999999999999999999999999 9999999999999987653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|++
T Consensus 187 ~sH~~~~~~~~~d~i 201 (237)
T TIGR00968 187 VTHDQEEAMEVADRI 201 (237)
T ss_pred EeCCHHHHHhhcCEE
Confidence 346666666667764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=250.89 Aligned_cols=188 Identities=15% Similarity=0.187 Sum_probs=150.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+++.+++++.+|.+..... |+|+|++|.+||+++++||||||||||+++++|+.+ |..|+|.+||++
T Consensus 1 M~~l~~~~~sl~y~g~~~~~----le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~--- 68 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSA----LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRR--- 68 (259)
T ss_pred CceeehhheEEecCCcchhh----hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEe---
Confidence 46788999999997654222 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh-HHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-VEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~ 227 (317)
+.+-..+ =|+|||+..+++ .+++.||++|+.....-.+ ...+...+.
T Consensus 69 -------------------i~gPgae------------rgvVFQ~~~LlP-Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~ 116 (259)
T COG4525 69 -------------------IEGPGAE------------RGVVFQNEALLP-WLNVIDNVAFGLQLRGIEKAQRREIAHQM 116 (259)
T ss_pred -------------------ccCCCcc------------ceeEeccCccch-hhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3322211 578888887665 6899999999876544333 333444456
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCC
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRN 306 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~ 306 (317)
+..+++.. ..++|. .+||||||||+.|||||+.+|+.++||||.. ||.-+++.+++++-++.+.....
T Consensus 117 l~~VgL~~--~~~~~i---------~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~ 185 (259)
T COG4525 117 LALVGLEG--AEHKYI---------WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ 185 (259)
T ss_pred HHHhCccc--ccccce---------EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 66777632 223444 6999999999999999999999999999999 99999999999999988776666
Q ss_pred cchhh
Q 021147 307 LSCKS 311 (317)
Q Consensus 307 ~~~~~ 311 (317)
+-++.
T Consensus 186 ~lliT 190 (259)
T COG4525 186 VLLIT 190 (259)
T ss_pred EEEEe
Confidence 54443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=295.73 Aligned_cols=207 Identities=15% Similarity=0.150 Sum_probs=157.4
Q ss_pred CCceEEEeEEEEcCCCCc-----cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 69 GSLTDAKNKILSYTPGAW-----IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~-----~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
.++|+++||++.|+.... .....+|++|||+|++||++||+|+||||||||+|+|+|+++ |++|+|+++|
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~~~g 385 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEIIFNG 385 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEEECC
Confidence 358999999999962100 000112999999999999999999999999999999999999 9999999999
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCC--CChHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEG--DSDVE 220 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~--~~~~~ 220 (317)
++ +...+....+. +.+.|+|+||++. .++..+||.+|+.+...... .....
T Consensus 386 ~~----------------------i~~~~~~~~~~----~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 386 QR----------------------IDTLSPGKLQA----LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred EE----------------------CCcCCHHHHHH----hcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 86 33333222211 1234999999973 34456899999986432211 11233
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.++++ ... +.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|++
T Consensus 440 ~~~~~~~L~~~gL~~~~~--~~~~---------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 440 AARVAWLLERVGLLPEHA--WRYP---------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHcCCCHHHh--hCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 45677889999874 221 2333 6999999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8653 457788888888875
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=256.87 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=141.0
Q ss_pred CceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.|+++|++++|++. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~--- 71 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPV-----LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGID--- 71 (207)
T ss_pred CeEEEEEEEEEeCCCCccc-----ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEE---
Confidence 569999999999753 233 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+...+++. |+|++|++.+++ .|+++|+.+.... . .+++.+++
T Consensus 72 -------------------~~~~~~~~~~~~-------i~~v~q~~~~~~--~tv~~~l~~~~~~---~---~~~~~~~l 117 (207)
T cd03369 72 -------------------ISTIPLEDLRSS-------LTIIPQDPTLFS--GTIRSNLDPFDEY---S---DEEIYGAL 117 (207)
T ss_pred -------------------hHHCCHHHHHhh-------EEEEecCCcccC--ccHHHHhcccCCC---C---HHHHHHHh
Confidence 434444444444 999999997665 4999999754211 1 12233333
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+ + +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 118 ~---~-------~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 179 (207)
T cd03369 118 R---V-------SEGG--------LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILT 179 (207)
T ss_pred h---c-------cCCC--------CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 1 1122 6899999999999999999999999999999 9999999999999987421
Q ss_pred cCCCcchhhcccCC
Q 021147 303 ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (317)
..|++..+.. +|+
T Consensus 180 ~th~~~~~~~-~d~ 192 (207)
T cd03369 180 IAHRLRTIID-YDK 192 (207)
T ss_pred EeCCHHHHhh-CCE
Confidence 2344444443 455
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=269.42 Aligned_cols=204 Identities=19% Similarity=0.168 Sum_probs=151.7
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+.+.....|++|+|.++|++
T Consensus 36 ~~~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~-- 107 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF-EA-----VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED-- 107 (286)
T ss_pred CceEEEEeeeEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEE--
Confidence 35679999999999754 34 99999999999999999999999999999999985311001389999999975
Q ss_pred eeeEecccCCCCcccccceeeccC--ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-C-hHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-S-DVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~-~~~~~~ 223 (317)
+... +...+++. ++|++|++.++. .|+.+|+.+....... . ....++
T Consensus 108 --------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~ 158 (286)
T PRK14275 108 --------------------IYGKFTDEVLLRKK-------IGMVFQKPNPFP--KSIFDNIAYGPRLHGINDKKQLEEI 158 (286)
T ss_pred --------------------hhhcccchHHhhhc-------EEEECCCCCCCc--cCHHHHHHhHHHhcCCCcHHHHHHH
Confidence 2211 12233444 999999998775 3999999875432111 1 122345
Q ss_pred HHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++.. .... +... ..|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 159 ~~~~l~~~~l~~~l~~~~-~~~~--------~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 159 VEKSLRKAALWDEVSDRL-DKNA--------LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHhCCccchhhHh-hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 566777777521 1111 1222 6899999999999999999999999999999 99999999999999875
Q ss_pred H-----hcCCCcchhhcccCCC
Q 021147 301 E-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~-----~~~~~~~~~~~~~~~~ 317 (317)
. ...|++..+...+||+
T Consensus 230 ~~~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 230 GSYTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred cCCeEEEEeCCHHHHHHhCCEE
Confidence 4 2456666666667764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=263.36 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=148.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
-+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|++
T Consensus 6 ~~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~------ 73 (251)
T PRK14244 6 ASVKNLNLWYGSK-QI-----LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID------ 73 (251)
T ss_pred EEeeeEEEEECCe-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe------
Confidence 4689999999743 33 99999999999999999999999999999999998622111479999999975
Q ss_pred ecccCCCCcccccceeeccCC--hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC---CChHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---DSDVEKQYNQI 226 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~ 226 (317)
+...+ ...+++. ++|+||++.+++. |+.+|+.+...... ......+++.+
T Consensus 74 ----------------i~~~~~~~~~~~~~-------i~~v~q~~~~~~~--tv~~ni~~~~~~~~~~~~~~~~~~~~~~ 128 (251)
T PRK14244 74 ----------------VYSVDTNVVLLRAK-------VGMVFQKPNPFPK--SIYDNVAYGPKLHGLAKNKKKLDEIVEK 128 (251)
T ss_pred ----------------hHhcccchHHHhhh-------EEEEecCcccccC--CHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 22221 1233444 9999999877763 89999987532111 11223345667
Q ss_pred HHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++... ... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~l~~~~l~~~~~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 199 (251)
T PRK14244 129 SLTSVGLWEELGDRL-KDSA--------FELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNF 199 (251)
T ss_pred HHHHcCCCchhhhHh-hcCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 7888886311 001 1222 6899999999999999999999999999999 9999999999999987431
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 200 tiiiisH~~~~~~~~~d~i 218 (251)
T PRK14244 200 TIIVVTHSMKQAKKVSDRV 218 (251)
T ss_pred eEEEEeCCHHHHHhhcCEE
Confidence 345566666666653
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=260.79 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=150.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|++ . + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 l~~~~l~~~~~~-~-~-----l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~------ 62 (235)
T cd03299 1 LKVENLSKDWKE-F-K-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKD------ 62 (235)
T ss_pred CeeEeEEEEeCC-c-e-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEE------
Confidence 578999999974 2 3 999999999999999999999999999999999999 999999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
+...+. .++ .++|++|++.++ ..+|+.+|+.+...... ......+++.++++.
T Consensus 63 ----------------~~~~~~--~~~-------~i~~~~q~~~~~-~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 116 (235)
T cd03299 63 ----------------ITNLPP--EKR-------DISYVPQNYALF-PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM 116 (235)
T ss_pred ----------------cCcCCh--hHc-------CEEEEeecCccC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 322222 122 399999998655 35799999986532221 123344567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.... .... .+||+||+||++||||++.+|++++|||||+ ||+.+++.+.+.++++...
T Consensus 117 ~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili 185 (235)
T cd03299 117 LGIDHLL---NRKP--------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185 (235)
T ss_pred cCChhHH---hcCc--------ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8874221 2233 6899999999999999999999999999999 9999999999999987543
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|++
T Consensus 186 ~tH~~~~~~~~~d~i 200 (235)
T cd03299 186 VTHDFEEAWALADKV 200 (235)
T ss_pred EecCHHHHHHhCCEE
Confidence 345555566666653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=252.35 Aligned_cols=195 Identities=16% Similarity=0.198 Sum_probs=157.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+.+|||++..++.. |+++||++++||++||+||||||||||+|.|+|-+. |++|++.++|.+
T Consensus 1 mi~a~nls~~~~Gr~l------l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~----- 64 (259)
T COG4559 1 MIRAENLSYSLAGRRL------LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVP----- 64 (259)
T ss_pred CeeeeeeEEEeeccee------ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcC-----
Confidence 6899999999976654 999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cC--CCChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-ME--GDSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~--~~~~~~~~~~~~~ 227 (317)
+..|.+.++.++ -+++||+..+ .+..||.|-+.++.. +. .+.+++.+-..++
T Consensus 65 -----------------l~~~~~~~lA~~-------raVlpQ~s~l-aFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~a 119 (259)
T COG4559 65 -----------------LNSWPPEELARH-------RAVLPQNSSL-AFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119 (259)
T ss_pred -----------------hhhCCHHHHHHH-------hhhcccCccc-ccceEHHHHHHhcccccccCCCchhhHHHHHHH
Confidence 778888888777 8899998763 334599999998863 22 2222333334556
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc------ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI------PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.... +..+ ..|||||+||+.+||.|+. ++++|+|||||| ||...+..++.+.+++.
T Consensus 120 la~~d~~~la---~R~y--------~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la 188 (259)
T COG4559 120 LAATDLSGLA---GRDY--------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188 (259)
T ss_pred HHHcChhhhh---ccch--------hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH
Confidence 6666653222 3333 5899999999999999985 445899999999 99999999999999987
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
.. -=|+++.++.++||+
T Consensus 189 ~~g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 189 REGGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hcCCcEEEEEccchHHHHhhhee
Confidence 54 236688888899885
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=264.58 Aligned_cols=203 Identities=15% Similarity=0.099 Sum_probs=152.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.+++++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|+++|++
T Consensus 7 ~~~~~~~~~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~---- 76 (261)
T PRK14263 7 IVMDCKLDKIFYGNF-MA-----VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQD---- 76 (261)
T ss_pred ceEEEEeEEEEeCCE-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEe----
Confidence 358999999999754 34 99999999999999999999999999999999999832111379999999986
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+.. .....+++. ++|++|++.++ .+|+.+|+.+.............++.++
T Consensus 77 ------------------i~~~~~~~~~~~~~-------i~~v~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~ 129 (261)
T PRK14263 77 ------------------VYGKGVDPVVVRRY-------IGMVFQQPNPF--SMSIFDNVAFGLRLNRYKGDLGDRVKHA 129 (261)
T ss_pred ------------------ccccccchHhhhhc-------eEEEecCCccc--cccHHHHHHHHHhhcCchHHHHHHHHHH
Confidence 221 122233444 99999998766 3799999987643221112223457778
Q ss_pred HHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 228 ATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 228 a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
++.+++... ....+... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 130 l~~~~l~~~i~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~ti 201 (261)
T PRK14263 130 LQGAALWDEVKDKLKVSG--------LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201 (261)
T ss_pred HHHcCCchhhhhhhhCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeE
Confidence 888886311 00001222 6899999999999999999999999999999 9999999999999998532
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 202 i~isH~~~~i~~~~d~v 218 (261)
T PRK14263 202 ALVTHNMQQAIRVADTT 218 (261)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 445666666667764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=251.61 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=123.5
Q ss_pred eEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|++++|++.. .+ ++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 i~~~~~~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~----- 65 (178)
T cd03247 1 LSINNVSFSYPEQEQQV-----LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVP----- 65 (178)
T ss_pred CEEEEEEEEeCCCCccc-----eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEE-----
Confidence 57899999997542 34 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+... ...+++. ++|++|++.+++ .|+++|+
T Consensus 66 -----------------~~~~-~~~~~~~-------i~~~~q~~~~~~--~tv~~~i----------------------- 95 (178)
T cd03247 66 -----------------VSDL-EKALSSL-------ISVLNQRPYLFD--TTLRNNL----------------------- 95 (178)
T ss_pred -----------------HHHH-HHHHHhh-------EEEEccCCeeec--ccHHHhh-----------------------
Confidence 3222 2233443 999999987664 4788776
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
. ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.
T Consensus 96 -------------~--------~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 -------------G--------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred -------------c--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 1 5899999999999999999999999999999 99999999999999873
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=263.25 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=151.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..++|+++|++++|++.. + |+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.-.
T Consensus 7 ~~~~i~~~~~~~~~~~~~-~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~- 74 (257)
T PRK14246 7 AEDVFNISRLYLYINDKA-I-----LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVL- 74 (257)
T ss_pred hhhheeeeeEEEecCCce-e-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEE-
Confidence 346899999999997543 3 999999999999999999999999999999999999 8898888877420
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--ChHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--SDVEKQYNQ 225 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~~~~~~~~~ 225 (317)
+. +..+...+...+++. ++|++|++.+++ .+|+.+|+.+....... .....+++.
T Consensus 75 ----~~-----------g~~~~~~~~~~~~~~-------i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~ 131 (257)
T PRK14246 75 ----YF-----------GKDIFQIDAIKLRKE-------VGMVFQQPNPFP-HLSIYDNIAYPLKSHGIKEKREIKKIVE 131 (257)
T ss_pred ----EC-----------CcccccCCHHHHhcc-------eEEEccCCccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00 000222233334444 999999987553 46999999876432111 122334567
Q ss_pred HHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++... ...+. .. ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|.++.+.
T Consensus 132 ~~~~~~~l~~~~~~~~~~-~~--------~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (257)
T PRK14246 132 ECLRKVGLWKEVYDRLNS-PA--------SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202 (257)
T ss_pred HHHHHcCCCccchhhhcC-Cc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 78888887311 11112 22 6899999999999999999999999999999 9999999999999987431
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|+...+...+|+
T Consensus 203 ~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 203 IAIVIVSHNPQQVARVADY 221 (257)
T ss_pred cEEEEEECCHHHHHHhCCE
Confidence 44555555555555
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=289.44 Aligned_cols=210 Identities=16% Similarity=0.137 Sum_probs=156.3
Q ss_pred CCceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++|+++||+++|+++ ..+ |++|||+|.+||++||+||||||||||+|+|+|+++|....|++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~-----l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 77 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV-----VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGES 77 (529)
T ss_pred CceEEEeceEEEecCCCCceee-----eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEe
Confidence 3589999999999631 233 99999999999999999999999999999999999832122379999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhc-c-CCCChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKS-M-EGDSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~-~-~~~~~~~~~ 222 (317)
+..++...+... ..+.+||++|++.. +....++.+|+.+... . ........+
T Consensus 78 ----------------------i~~~~~~~~~~~---~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (529)
T PRK15134 78 ----------------------LLHASEQTLRGV---RGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG 132 (529)
T ss_pred ----------------------cccCCHHHHHHH---hcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH
Confidence 333333222110 01239999999752 4445789998875321 1 111223456
Q ss_pred HHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.++++.+++... ... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 133 ~~~~~l~~~gl~~~~~~~-~~~~--------~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 203 (529)
T PRK15134 133 EILNCLDRVGIRQAAKRL-TDYP--------HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ 203 (529)
T ss_pred HHHHHHHHCCCCChHHHH-hhCC--------cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHH
Confidence 67788999987421 011 2233 6999999999999999999999999999999 99999999999999975
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 204 ~~~g~tvi~vtHd~~~~~~~~dri 227 (529)
T PRK15134 204 QELNMGLLFITHNLSIVRKLADRV 227 (529)
T ss_pred HhcCCeEEEEcCcHHHHHHhcCEE
Confidence 43 567777777777775
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=282.18 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=160.9
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.++++|++|+|++... |++|||++.+||++||+|+||||||||+|+|+|.|+ |++|+|+++|+.
T Consensus 6 ~~ll~~~~i~K~FggV~A------L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~--- 71 (500)
T COG1129 6 PPLLELRGISKSFGGVKA------LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKP--- 71 (500)
T ss_pred cceeeeecceEEcCCcee------eccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEE---
Confidence 457999999999986543 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-----CChHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-----DSDVEKQY 223 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-----~~~~~~~~ 223 (317)
..-.++.+-++. .|++|+|+..+++ ++||++|+.++..... +.....++
T Consensus 72 -------------------~~~~sp~~A~~~------GI~~V~QEl~L~p-~LsVaeNifLgre~~~~~g~id~~~m~~~ 125 (500)
T COG1129 72 -------------------VAFSSPRDALAA------GIATVHQELSLVP-NLSVAENIFLGREPTRRFGLIDRKAMRRR 125 (500)
T ss_pred -------------------ccCCCHHHHHhC------CcEEEeechhccC-CccHHHHhhcccccccCCCccCHHHHHHH
Confidence 333454443332 4899999998665 7999999988753221 22344556
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
..+++..+++... + ...+ .+||.||||.++||||+..+++++||||||+ |+....+.+++.++++...
T Consensus 126 A~~~l~~lg~~~~--~-~~~v--------~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~ 194 (500)
T COG1129 126 ARELLARLGLDID--P-DTLV--------GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194 (500)
T ss_pred HHHHHHHcCCCCC--h-hhhh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 6677777776311 1 3444 7999999999999999999999999999999 9999999999999998754
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
-+|+++-+-.+||||
T Consensus 195 Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 195 GVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred CCEEEEEcCcHHHHHHhcCEE
Confidence 456677777777774
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=261.87 Aligned_cols=179 Identities=18% Similarity=0.215 Sum_probs=137.2
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++ ...
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~----------------------~~~- 87 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLV----------------------PWK- 87 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEE----------------------ccc-
Confidence 3999999999999999999999999999999999999 999999999875 211
Q ss_pred ChHHHHHHHHHhhhhccccc-cccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 172 DSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~-Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
....+++. ++|++ |.+.+ ...+|+.+|+.+...... ......+++.++++.++++... ...+
T Consensus 88 ~~~~~~~~-------i~~~~~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~----- 151 (236)
T cd03267 88 RRKKFLRR-------IGVVFGQKTQL-WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL---DTPV----- 151 (236)
T ss_pred cchhhccc-------EEEEcCCcccc-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh---cCCh-----
Confidence 11223333 99997 44443 345799999976543211 2222344566778888874221 2333
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|+...+...+|++
T Consensus 152 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 224 (236)
T cd03267 152 ---RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRV 224 (236)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988542 456666666767654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=261.20 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=146.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~ 146 (317)
..+|+++||++.|++. .+ |++|||+|++||++||+|+||||||||+++|+|+ ++ |++|+|+++|.+
T Consensus 5 ~~~l~~~~l~~~~~~~-~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~- 72 (252)
T CHL00131 5 KPILEIKNLHASVNEN-EI-----LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGES- 72 (252)
T ss_pred CceEEEEeEEEEeCCE-Ee-----eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEE-
Confidence 4579999999999754 34 9999999999999999999999999999999998 56 899999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-C---C-C--C-h
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-E---G-D--S-D 218 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~---~-~--~-~ 218 (317)
+...+....++ ..++|++|++.++. ..++.+|+.+.... . . . . .
T Consensus 73 ---------------------~~~~~~~~~~~------~~~~~~~q~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 124 (252)
T CHL00131 73 ---------------------ILDLEPEERAH------LGIFLAFQYPIEIP-GVSNADFLRLAYNSKRKFQGLPELDPL 124 (252)
T ss_pred ---------------------cccCChhhhhe------eeEEEEeccccccc-cccHHHHHHHhhhhhhcccccccccHH
Confidence 33333322221 12788999886554 45888888754211 0 0 0 1 1
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchh-cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL-SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~-~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
...+++.++++.++++.... +... . .|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|
T Consensus 125 ~~~~~~~~~l~~~~l~~~~~--~~~~--------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 194 (252)
T CHL00131 125 EFLEIINEKLKLVGMDPSFL--SRNV--------NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194 (252)
T ss_pred HHHHHHHHHHHHcCCchhhh--cccc--------ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 12345567788888741111 1222 3 599999999999999999999999999999 9999999999999
Q ss_pred HHHHHh------cCCCcchhhcc-cCC
Q 021147 297 RYCLEH------ADRNLSCKSCA-RNK 316 (317)
Q Consensus 297 ~~l~~~------~~~~~~~~~~~-~~~ 316 (317)
+++.+. ..|+...+... +|+
T Consensus 195 ~~~~~~g~tii~~tH~~~~~~~~~~d~ 221 (252)
T CHL00131 195 NKLMTSENSIILITHYQRLLDYIKPDY 221 (252)
T ss_pred HHHHhCCCEEEEEecCHHHHHhhhCCE
Confidence 987642 34555555443 565
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=286.78 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=153.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |++|||+|++|++++|+||||||||||+|+|+|+++|+ |++|+|.++|++
T Consensus 1 ~l~i~~l~~~~~~~-~i-----l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~---~~~G~i~~~g~~----- 66 (500)
T TIGR02633 1 LLEMKGIVKTFGGV-KA-----LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG---TWDGEIYWSGSP----- 66 (500)
T ss_pred CEEEEeEEEEeCCe-Ee-----ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEE-----
Confidence 48999999999754 34 99999999999999999999999999999999999821 279999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-----CCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-----~~~~~~~~~~~ 225 (317)
+...+....+ .+.+||+||++.++. .+|+.+|+.+..... .......+++.
T Consensus 67 -----------------~~~~~~~~~~------~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (500)
T TIGR02633 67 -----------------LKASNIRDTE------RAGIVIIHQELTLVP-ELSVAENIFLGNEITLPGGRMAYNAMYLRAK 122 (500)
T ss_pred -----------------CCCCCHHHHH------hCCEEEEeeccccCC-CCcHHHHHHhhccccccccccCHHHHHHHHH
Confidence 3333322211 123999999986544 589999998754221 11122334567
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... ....+ .+|||||+||++||||++.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 123 ~~l~~~~l~~~~--~~~~~--------~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 192 (500)
T TIGR02633 123 NLLRELQLDADN--VTRPV--------GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192 (500)
T ss_pred HHHHHcCCCCCc--ccCch--------hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 788888873211 12334 6899999999999999999999999999999 9999999999999998543
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 193 tviiitHd~~~~~~~~d~i 211 (500)
T TIGR02633 193 ACVYISHKLNEVKAVCDTI 211 (500)
T ss_pred EEEEEeCcHHHHHHhCCEE
Confidence 467777777777764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=248.13 Aligned_cols=156 Identities=23% Similarity=0.324 Sum_probs=129.7
Q ss_pred eEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 72 I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
|+++|++++|++.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~-----l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~----- 65 (171)
T cd03228 1 IEFKNVSFSYPGRPKPV-----LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVD----- 65 (171)
T ss_pred CEEEEEEEEcCCCCccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEE-----
Confidence 57899999997641 33 999999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...+++. ++|++|++.++. .|+.||+
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~~~~~~~~~~--~t~~e~l----------------------- 96 (171)
T cd03228 66 -----------------LRDLDLESLRKN-------IAYVPQDPFLFS--GTIRENI----------------------- 96 (171)
T ss_pred -----------------hhhcCHHHHHhh-------EEEEcCCchhcc--chHHHHh-----------------------
Confidence 434444444444 999999986554 3777665
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cC
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----AD 304 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~ 304 (317)
||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. ..
T Consensus 97 ------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~s 152 (171)
T cd03228 97 ------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152 (171)
T ss_pred ------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 89999999999999999999999999999 9999999999999987532 34
Q ss_pred CCcchhhcccCC
Q 021147 305 RNLSCKSCARNK 316 (317)
Q Consensus 305 ~~~~~~~~~~~~ 316 (317)
|+...+.. +|+
T Consensus 153 h~~~~~~~-~d~ 163 (171)
T cd03228 153 HRLSTIRD-ADR 163 (171)
T ss_pred cCHHHHHh-CCE
Confidence 45555544 555
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=250.49 Aligned_cols=195 Identities=17% Similarity=0.278 Sum_probs=167.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++.. + |+++|++|++|.+++||||||||||||+.++++|.+ +++|+|+++|.+
T Consensus 1 MI~i~nv~K~y~~~~-v-----l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~----- 64 (252)
T COG4604 1 MITIENVSKSYGTKV-V-----LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLE----- 64 (252)
T ss_pred CeeehhhhHhhCCEE-e-----eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeee-----
Confidence 689999999997653 4 999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccC--CCChHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SME--GDSDVEKQYNQIV 227 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~--~~~~~~~~~~~~~ 227 (317)
+..++.+.+.+. +.++-|+.+ ++..+||+|-+.|+. +|. ...+++...+.++
T Consensus 65 -----------------~~~~~s~~LAk~-------lSILkQ~N~-i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~a 119 (252)
T COG4604 65 -----------------LTSTPSKELAKK-------LSILKQENH-INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119 (252)
T ss_pred -----------------cccCChHHHHHH-------HHHHHhhch-hhheeEHHHHhhcCCCcccCCCCchHHHHHHHHH
Confidence 778888888887 777777765 555789999999986 332 2346778888899
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++-+.+.. +.+.|- .+||||||||..+|..++.+.+.++||||-+ ||.+....+++.++++...
T Consensus 120 ieyl~L~~--l~dryL---------d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Kt 188 (252)
T COG4604 120 IEYLHLED--LSDRYL---------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT 188 (252)
T ss_pred HHHhcccc--hHHHhH---------HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCe
Confidence 99988743 223333 6999999999999999999999999999999 9999999999999998765
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
.=|++.+++|+.|.+
T Consensus 189 iviVlHDINfAS~YsD~I 206 (252)
T COG4604 189 IVVVLHDINFASCYSDHI 206 (252)
T ss_pred EEEEEecccHHHhhhhhe
Confidence 346789999999875
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=292.69 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=157.6
Q ss_pred CCceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++|+++||+++|+.. ..+ |+||||+|++||++||||+||||||||+|+|+|+++ |++|+|.++|..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~-----l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~ 79 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA-----VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKML 79 (623)
T ss_pred CceEEEeceEEEecCCCCceeE-----EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEE
Confidence 4689999999999632 223 999999999999999999999999999999999999 999999998863
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc--CCCChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM--EGDSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~--~~~~~~~~~ 222 (317)
... +. .....+...+...++.. ....|||++|++. .+...+||.+|+.+.... ........+
T Consensus 80 ~~~----~~--------~~~~~~~~~~~~~~~~~---r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 144 (623)
T PRK10261 80 LRR----RS--------RQVIELSEQSAAQMRHV---RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144 (623)
T ss_pred ecc----cc--------ccccccccCCHHHHHHH---hCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Confidence 100 00 00000111222211110 0124999999873 234457999999875322 112223446
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.++++.++++. ....+.+. .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++++++.
T Consensus 145 ~~~~~l~~~gL~~~~~~~~~~~---------~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~ 215 (623)
T PRK10261 145 EAKRMLDQVRIPEAQTILSRYP---------HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ 215 (623)
T ss_pred HHHHHHHHCCCCChhhHHhCCC---------ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHH
Confidence 6778899999842 11112333 6999999999999999999999999999999 99999999999999986
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 216 ~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 216 KEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEE
Confidence 43 457788888888875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=261.93 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=151.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||+++|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+.+|....|++|+|.++|.+...
T Consensus 14 ~~~l~~~~l~~~~~~~-~v-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY-QA-----LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCe-ee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 4579999999999754 34 99999999999999999999999999999999999732101279999999875110
Q ss_pred eeEecccCCCCcccccceee-ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC--hHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVI-RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS--DVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~--~~~~~~~~ 225 (317)
. ...+...+++. ++|++|++.++. .|+.+|+.+........ ....+++.
T Consensus 88 -------------------~~~~~~~~~~~~~-------i~~~~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~ 139 (265)
T PRK14252 88 -------------------LSPEVDPIEVRMR-------ISMVFQKPNPFP--KSIFENVAYGLRIRGVKRRSILEERVE 139 (265)
T ss_pred -------------------cccccCHHHHhcc-------EEEEccCCcCCc--chHHHHHHhHHHHcCCChHHHHHHHHH
Confidence 0 11122233444 999999988775 39999998753221111 12234566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +..+ .+||+||+||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 140 ~~l~~~~l~~~l~~~~-~~~~--------~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 210 (265)
T PRK14252 140 NALRNAALWDEVKDRL-GDLA--------FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNK 210 (265)
T ss_pred HHHHHcCCchhhhHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 6777776521 1111 1222 6899999999999999999999999999999 9999999999999987532
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.+.+||+
T Consensus 211 ~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 211 VTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 446666666667764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=243.91 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=151.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++++++..+.... .+.+|++|+|.|++||.+|||||||||||||+-+++||.. |++|+|++.|++
T Consensus 6 ii~~~~l~ktvg~~~~--~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~----- 73 (228)
T COG4181 6 IIEVHHLSKTVGQGEG--ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQP----- 73 (228)
T ss_pred eeehhhhhhhhcCCCc--ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcc-----
Confidence 7999999999865432 2233999999999999999999999999999999999999 999999999997
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a~ 229 (317)
+.+++.+.... -..++||+|||...+.+ ++|-.||+++......+. ...+....+.++
T Consensus 74 -----------------L~~ldEd~rA~---~R~~~vGfVFQSF~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~ 132 (228)
T COG4181 74 -----------------LHKLDEDARAA---LRARHVGFVFQSFHLIP-NLTALENVALPLELRGESSADSRAGAKALLE 132 (228)
T ss_pred -----------------hhhcCHHHHHH---hhccceeEEEEeeeccc-cchhhhhccchhhhcCCccccHHHHHHHHHH
Confidence 55555443221 12345999999987665 799999998765444432 233445667788
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+|+.. .-.+|+ .+||||++||++||||++..|++++.||||- ||..|-..+.+++-.+.+.
T Consensus 133 ~vGLg~--Rl~HyP---------~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre 195 (228)
T COG4181 133 AVGLGK--RLTHYP---------AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195 (228)
T ss_pred HhCccc--ccccCc---------cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence 888731 223677 6999999999999999999999999999999 9999999999999877543
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=257.31 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=145.5
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.++||+++|++. ..+ |+|+||+|++||+++|+||||||||||+|+|+|++++. .|++|+|.++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~--~~~~G~i~~~g~~-- 73 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI-----LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQP-- 73 (226)
T ss_pred cceeecceeeeecCcccccc-----ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCC--CCCceEEEECCEE--
Confidence 47899999999754 233 99999999999999999999999999999999998621 1579999999975
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--CC-Ch-HHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--GD-SD-VEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~~-~~-~~~~~ 223 (317)
+. ...+++ .++|++|++.+++ .+|+.+|+.+..... .. .. .....
T Consensus 74 --------------------~~---~~~~~~-------~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 122 (226)
T cd03234 74 --------------------RK---PDQFQK-------CVAYVRQDDILLP-GLTVRETLTYTAILRLPRKSSDAIRKKR 122 (226)
T ss_pred --------------------CC---hHHhcc-------cEEEeCCCCccCc-CCcHHHHHHHHHHhhcccccchHHHHHH
Confidence 21 122333 3999999987654 579999998754221 11 11 11122
Q ss_pred HHH-HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQI-VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~-~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..+ .++.+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+
T Consensus 123 ~~~~~l~~~~l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~ 191 (226)
T cd03234 123 VEDVLLRDLALTRIG---GNLV--------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191 (226)
T ss_pred HHHHHHHhhcchhhh---cccc--------cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 333 56666653211 2223 6899999999999999999999999999999 999999999999998764
Q ss_pred h------cCCCc-chhhcccCCC
Q 021147 302 H------ADRNL-SCKSCARNKV 317 (317)
Q Consensus 302 ~------~~~~~-~~~~~~~~~~ 317 (317)
. ..|+. ..+.+.+|++
T Consensus 192 ~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 192 RNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred CCCEEEEEecCCCHHHHHhCCEE
Confidence 3 33554 2555666653
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=261.22 Aligned_cols=180 Identities=20% Similarity=0.270 Sum_probs=138.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.. .
T Consensus 3 ~~l~~~~l~~~~~~~-~v-----l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~-~-- 68 (251)
T PRK09544 3 SLVSLENVSVSFGQR-RV-----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL-R-- 68 (251)
T ss_pred cEEEEeceEEEECCc-eE-----EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc-C--
Confidence 479999999999754 34 999999999999999999999999999999999999 999999987642 3
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc-hhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF-VIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
++|++|++.++.. ..++.+++.+.. .. ..+++.+++
T Consensus 69 -------------------------------------i~~v~q~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~l 105 (251)
T PRK09544 69 -------------------------------------IGYVPQKLYLDTTLPLTVNRFLRLRP---GT---KKEDILPAL 105 (251)
T ss_pred -------------------------------------EEEeccccccccccChhHHHHHhccc---cc---cHHHHHHHH
Confidence 5555554433221 134555543211 10 123466778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 106 ~~~gl~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ti 174 (251)
T PRK09544 106 KRVQAGHLI---DAPM--------QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAV 174 (251)
T ss_pred HHcCChHHH---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 888874221 2223 6899999999999999999999999999999 9999999999999987653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 175 iivsH~~~~i~~~~d~i 191 (251)
T PRK09544 175 LMVSHDLHLVMAKTDEV 191 (251)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 466777776777764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=267.11 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=152.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++|....|++|+|.++|.+
T Consensus 43 ~~~l~i~nl~~~~~~~-~i-----L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~--- 113 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD-HA-----LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD--- 113 (305)
T ss_pred CceEEEEEEEEEeCCe-ee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE---
Confidence 3479999999999754 33 99999999999999999999999999999999998621111589999999976
Q ss_pred eeEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC------------
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME------------ 214 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~------------ 214 (317)
+.. .+...+++. ++|++|++.+++ .|+++|+.+.....
T Consensus 114 -------------------i~~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 165 (305)
T PRK14264 114 -------------------IYQDGVNLVELRKR-------VGMVFQSPNPFP--KSIRENISYGPRKHGDINTGLLARLL 165 (305)
T ss_pred -------------------cccccccHHHHhhc-------eEEEccCCcccc--ccHHHHHHhHHhhccccccccccccc
Confidence 221 223334444 999999987765 49999998753210
Q ss_pred -CC-ChHHHHHHHHHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 215 -GD-SDVEKQYNQIVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 215 -~~-~~~~~~~~~~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
.. .....+++.++++.++++. .... +... .+||+||+||++|||||+.+|+++|||||++ ||+.++
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~--------~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~ 236 (305)
T PRK14264 166 GRDDKDAEDELVERSLRQAALWDEVNDRL-DDNA--------LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236 (305)
T ss_pred ccCchHHHHHHHHHHHHHcCCchhhhHHh-cCcc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 00 1122345677788877631 1111 1222 6899999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 290 LIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 290 ~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
..+.+.|+++.+. ..|++..+...+||
T Consensus 237 ~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 237 SKIEDLIEELAEEYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCE
Confidence 9999999998542 45666666666776
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=249.33 Aligned_cols=160 Identities=18% Similarity=0.332 Sum_probs=128.9
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++||+++|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 ~~~~l~~~~~~~-~~-----l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~------- 62 (180)
T cd03214 1 EVENLSVGYGGR-TV-----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKD------- 62 (180)
T ss_pred CeeEEEEEECCe-ee-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE-------
Confidence 478999999753 34 999999999999999999999999999999999999 999999999976
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
+..++...+++. ++|++| +++.++
T Consensus 63 ---------------~~~~~~~~~~~~-------i~~~~q----------------------------------~l~~~g 86 (180)
T cd03214 63 ---------------LASLSPKELARK-------IAYVPQ----------------------------------ALELLG 86 (180)
T ss_pred ---------------CCcCCHHHHHHH-------HhHHHH----------------------------------HHHHcC
Confidence 444454444444 888776 444455
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------AD 304 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~ 304 (317)
+.... .... ..||+||+||+++|||++.+|+++||||||+ ||+.+...+.+.++++.+. ..
T Consensus 87 l~~~~---~~~~--------~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 155 (180)
T cd03214 87 LAHLA---DRPF--------NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred CHhHh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 42111 1222 6899999999999999999999999999999 9999999999999988653 34
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+.+.+|++
T Consensus 156 h~~~~~~~~~d~~ 168 (180)
T cd03214 156 HDLNLAARYADRV 168 (180)
T ss_pred CCHHHHHHhCCEE
Confidence 6666666666663
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=260.70 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=147.1
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
++++||++. . + |+++||+|++|++++|+|+||||||||+++|+|+++ + +|+|.++|++
T Consensus 1 ~~~~~l~~~----~-~-----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~------ 58 (248)
T PRK03695 1 MQLNDVAVS----T-R-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQP------ 58 (248)
T ss_pred Ccccccchh----c-e-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEe------
Confidence 357888875 1 3 999999999999999999999999999999999986 6 8999999986
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+...+...+++. ++|+||++.++. .+|+.+|+.+............+++.++++.+
T Consensus 59 ----------------i~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~ 114 (248)
T PRK03695 59 ----------------LEAWSAAELARH-------RAYLSQQQTPPF-AMPVFQYLTLHQPDKTRTEAVASALNEVAEAL 114 (248)
T ss_pred ----------------cCcCCHHHHhhh-------eEEecccCccCC-CccHHHHHHhcCccCCCcHHHHHHHHHHHHHc
Confidence 444454445444 999999875443 57999999876422222223345677888888
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc-------ccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI-------PPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~-------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
++.... .... ..||+||+||+++|||++. +|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~l~~~~---~~~~--------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (248)
T PRK03695 115 GLDDKL---GRSV--------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQG 183 (248)
T ss_pred CCHhHh---cCCc--------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 874211 2233 6899999999999999997 679999999999 9999999999999988642
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 184 ~tvi~~sH~~~~~~~~~d~i 203 (248)
T PRK03695 184 IAVVMSSHDLNHTLRHADRV 203 (248)
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 456666677777764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=255.73 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=164.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
++++++|+++|+.... ++||||++++|++++++|+|||||||++|+|.|+++ |++|+|.|+|.+
T Consensus 2 ~L~ie~vtK~Fg~k~a------v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~----- 65 (300)
T COG4152 2 ALEIEGVTKSFGDKKA------VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGP----- 65 (300)
T ss_pred ceEEecchhccCceee------ecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcc-----
Confidence 5899999999987653 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~ 229 (317)
++ ...+.+ |||+|.+..++. .+||.|.+.|+... .....+.++++.+.++
T Consensus 66 -----------------~~----~~~~~r-------IGyLPEERGLy~-k~tv~dql~yla~LkGm~~~e~~~~~~~wLe 116 (300)
T COG4152 66 -----------------LS----QEIKNR-------IGYLPEERGLYP-KMTVEDQLKYLAELKGMPKAEIQKKLQAWLE 116 (300)
T ss_pred -----------------hh----hhhhhh-------cccChhhhccCc-cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 21 123334 999999987655 69999999886544 3445677888889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
++.+.... ...+ .+||-|.+|++.+--+++++|.++|||||+| |||.+.+.+.+.+.++...
T Consensus 117 r~~i~~~~---~~kI--------k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIif 185 (300)
T COG4152 117 RLEIVGKK---TKKI--------KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185 (300)
T ss_pred hccccccc---cchH--------HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEE
Confidence 99874222 3455 7999999999999999999999999999999 9999999999999998754
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
++|....++++||++
T Consensus 186 SsH~Me~vEeLCD~l 200 (300)
T COG4152 186 SSHRMEHVEELCDRL 200 (300)
T ss_pred ecchHHHHHHHhhhh
Confidence 889999999999985
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=258.30 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=149.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
-+|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+..+....|++|+|+++|++
T Consensus 2 ~~l~~~~v~~~~~~~-~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---- 71 (250)
T PRK14266 2 YRIEVENLNTYFDDA-HI-----LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD---- 71 (250)
T ss_pred cEEEEEeEEEEeCCe-EE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE----
Confidence 358999999999753 34 99999999999999999999999999999999997411001389999999976
Q ss_pred eEecccCCCCcccccceeecc--CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C-CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G-DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~-~~~~~~~~~~ 225 (317)
+.. .+...+++. ++|+||++.++. .|+.+|+.+..... . ......+++.
T Consensus 72 ------------------i~~~~~~~~~~~~~-------i~~~~q~~~~~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~ 124 (250)
T PRK14266 72 ------------------IYDPAVDVVELRKK-------VGMVFQKPNPFP--KSIFDNVAYGLRIHGEDDEDFIEERVE 124 (250)
T ss_pred ------------------cccccccHHHHhhh-------eEEEecCCccCc--chHHHHHHhHHhhcCCCCHHHHHHHHH
Confidence 322 122334444 999999988775 39999998653211 1 1122345566
Q ss_pred HHHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 226 IVATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 226 ~~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
++++.+++.. .... +... ..||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 125 ~~l~~~~l~~~l~~~~-~~~~--------~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 195 (250)
T PRK14266 125 ESLKAAALWDEVKDKL-DKSA--------LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED 195 (250)
T ss_pred HHHHHcCCchhHHHHH-hCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 7788877631 1111 2222 6899999999999999999999999999999 9999999999999987531
Q ss_pred -----cCCCcchhhcccCC
Q 021147 303 -----ADRNLSCKSCARNK 316 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~ 316 (317)
..|+...+.+.+|+
T Consensus 196 ~tiii~sh~~~~~~~~~~~ 214 (250)
T PRK14266 196 YTIVIVTHNMQQATRVSKY 214 (250)
T ss_pred CeEEEEECCHHHHHhhcCE
Confidence 34555556665554
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=249.05 Aligned_cols=169 Identities=13% Similarity=0.144 Sum_probs=134.9
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++|++++|++. . +.++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ~l~~~~l~~~~~~~-~------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----- 63 (195)
T PRK13541 1 MLSLHQLQFNIEQK-N------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCN----- 63 (195)
T ss_pred CeEEEEeeEEECCc-E------EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcc-----
Confidence 58999999999653 3 445999999999999999999999999999999999 999999999975
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+.... ++. ++|++|++. +....|+.+|+.+...... ..+++.++++.
T Consensus 64 -----------------i~~~~----~~~-------~~~~~~~~~-~~~~~tv~~~l~~~~~~~~----~~~~~~~~l~~ 110 (195)
T PRK13541 64 -----------------INNIA----KPY-------CTYIGHNLG-LKLEMTVFENLKFWSEIYN----SAETLYAAIHY 110 (195)
T ss_pred -----------------cChhh----hhh-------EEeccCCcC-CCccCCHHHHHHHHHHhcc----cHHHHHHHHHH
Confidence 22111 122 899998874 3346799999987543211 12346677788
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+++.... +... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.+++..
T Consensus 111 ~~l~~~~---~~~~--------~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 111 FKLHDLL---DEKC--------YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170 (195)
T ss_pred cCCHhhh---ccCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 8864221 2222 7899999999999999999999999999999 99999999999997653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=254.03 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=134.0
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
.+.|+.|.|++...+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~------- 64 (218)
T cd03290 2 QVTNGYFSWGSGLAT-----LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKN------- 64 (218)
T ss_pred eeeeeEEecCCCCcc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcc-------
Confidence 578999999755444 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCCh----HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 153 QEYTIPRGVRHGELVIRRSDS----SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+. ...++ .++|++|++.++. .|+.+|+.+.... . .++..+++
T Consensus 65 ---------------~~~~~~~~~~~~~~~-------~i~~~~q~~~~~~--~t~~~nl~~~~~~---~---~~~~~~~~ 114 (218)
T cd03290 65 ---------------ESEPSFEATRSRNRY-------SVAYAAQKPWLLN--ATVEENITFGSPF---N---KQRYKAVT 114 (218)
T ss_pred ---------------cccccccccchhhcc-------eEEEEcCCCcccc--ccHHHHHhhcCcC---C---HHHHHHHH
Confidence 222111 11222 3999999987663 5999999865321 1 12234556
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH--HHHHH
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD--MLRYC 299 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~--~l~~l 299 (317)
+.+++. ...++.++.+.+.... ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+ +++.+
T Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~--~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~ 188 (218)
T cd03290 115 DACSLQPDIDLLPFGDQTEIGERG--INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188 (218)
T ss_pred HHhCcHHHHHhCcCccccCcccCC--CcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH
Confidence 666652 1112223333222222 6899999999999999999999999999999 99999999988 55554
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=313.30 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=180.9
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----C----CCCceEEEeEEEEcCCC-CccccccCceeeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----R----IGSLTDAKNKILSYTPG-AWIENVGGMTLSDY 98 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl 98 (317)
++..|+......+..+.+++.+.+|+.+++..++.... . ....|+++|++|.|++. ..+ |+|+||
T Consensus 585 ~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~isl 659 (1522)
T TIGR00957 585 ILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPT-----LNGITF 659 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCce-----eeeeEE
Confidence 45677888888999999999999999999975433211 0 11379999999999753 334 999999
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~---------------------------------- 700 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVHMKGS---------------------------------- 700 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----cCCcEEEECCE----------------------------------
Confidence 999999999999999999999999999999 99999997763
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCc
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLT 256 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LS 256 (317)
|+|++|++.+++ .||+||+.++..+. .++..++++.+++. ...+++|..+.++++| .+||
T Consensus 701 --------i~yv~Q~~~l~~--~Ti~eNI~~g~~~~------~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g--~~LS 762 (1522)
T TIGR00957 701 --------VAYVPQQAWIQN--DSLRENILFGKALN------EKYYQQVLEACALLPDLEILPSGDRTEIGEKG--VNLS 762 (1522)
T ss_pred --------EEEEcCCccccC--CcHHHHhhcCCccC------HHHHHHHHHHhCCHHHHHhcCCCCCceecCCC--CCCC
Confidence 899999998775 49999999875421 12344555555552 3346789999999999 8999
Q ss_pred HHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH---HH-----hcCCCcchhhcccCCC
Q 021147 257 DRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC---LE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 257 gG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l---~~-----~~~~~~~~~~~~~~~~ 317 (317)
||||||++||||++.+|+++|||||++ ||+.+++.+.+.+.+. .+ ...|+++.+.. +|+|
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~i 831 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVI 831 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEE
Confidence 999999999999999999999999999 9999999999988643 11 13455655554 5653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=284.29 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=149.7
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEec
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
++||+++|++. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~~nl~~~~~~~-~i-----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~-------- 61 (491)
T PRK10982 1 MSNISKSFPGV-KA-----LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKE-------- 61 (491)
T ss_pred CCceEEEeCCE-Ee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEE--------
Confidence 47899999754 34 999999999999999999999999999999999999 999999999986
Q ss_pred ccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCC---CChHHHHHHHHHH
Q 021147 154 EYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEG---DSDVEKQYNQIVA 228 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~---~~~~~~~~~~~~a 228 (317)
+...+.. .+++ .++|++|++.++ ..+||++|+.+... ... ......+++.+++
T Consensus 62 --------------~~~~~~~~~~~~-------~i~~v~q~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 119 (491)
T PRK10982 62 --------------IDFKSSKEALEN-------GISMVHQELNLV-LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF 119 (491)
T ss_pred --------------CCCCCHHHHHhC-------CEEEEecccccc-cCCCHHHHhhcccccccccccCHHHHHHHHHHHH
Confidence 3222222 2222 399999998644 35799999986532 111 1122234567778
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... .... .+||||||||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~~~~l~~~~---~~~~--------~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 188 (491)
T PRK10982 120 DELDIDIDP---RAKV--------ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV 188 (491)
T ss_pred HHcCCCCCc---cCch--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 888864211 2233 7999999999999999999999999999999 9999999999999998542
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 189 i~tH~~~~~~~~~d~i 204 (491)
T PRK10982 189 YISHKMEEIFQLCDEI 204 (491)
T ss_pred EEecCHHHHHHhCCEE
Confidence 467777777777764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=284.75 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=150.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++|+++.|+ . + |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 264 ~~l~~~~l~~~~~--~-~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~---- 326 (510)
T PRK09700 264 TVFEVRNVTSRDR--K-K-----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKD---- 326 (510)
T ss_pred cEEEEeCccccCC--C-c-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEE----
Confidence 4799999999773 2 3 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhcccccccc--ccccchhhHHHHHHhhhcc-----C---C--C
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVI--RKVNFVIFVVDGLAVLKSM-----E---G--D 216 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~--~~~~~~~tv~eni~~~~~~-----~---~--~ 216 (317)
+...+. ..++ +.+||+||++ ..+...+|+.+|+.+.... . . .
T Consensus 327 ------------------~~~~~~~~~~~-------~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 381 (510)
T PRK09700 327 ------------------ISPRSPLDAVK-------KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFH 381 (510)
T ss_pred ------------------CCCCCHHHHHH-------CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccC
Confidence 322222 1222 2399999984 2234468999999864321 0 0 1
Q ss_pred ChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.....+++.++++.+++. ... +..+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+
T Consensus 382 ~~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 382 EVDEQRTAENQRELLALKCHSV---NQNI--------TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred hHHHHHHHHHHHHhcCCCCCCc---cCcc--------ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 112234466788888873 221 3444 7999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+|+++.+. ..|++..+...+|||
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 99988643 556667777777764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=274.06 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=161.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+++++++|.|++- .+ +++|||+|++||++||+|+||||||||+++|+|+|+ |++|+|+++|++
T Consensus 3 ~~l~~~~itK~f~~~-~A-----nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~---- 67 (501)
T COG3845 3 PALEMRGITKRFPGV-VA-----NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKE---- 67 (501)
T ss_pred ceEEEeccEEEcCCE-Ee-----cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEE----
Confidence 468999999999843 22 999999999999999999999999999999999999 999999999997
Q ss_pred eEecccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC----CCChHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME----GDSDVEKQYN 224 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~----~~~~~~~~~~ 224 (317)
++-.++. ..+. .||+|+|.+.+++ ++||.||+.++.... .......+++
T Consensus 68 ------------------v~~~sP~dA~~~-------GIGMVhQHF~Lv~-~lTV~ENiiLg~e~~~~~~~~~~~~~~~i 121 (501)
T COG3845 68 ------------------VRIKSPRDAIRL-------GIGMVHQHFMLVP-TLTVAENIILGLEPSKGGLIDRRQARARI 121 (501)
T ss_pred ------------------eccCCHHHHHHc-------CCcEEeecccccc-ccchhhhhhhcCccccccccCHHHHHHHH
Confidence 3223333 3333 3999999997665 799999999876432 1334567788
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++.+..|++... ...+ ..||=|++||+.|-++|+++|++|||||||+ |-|...+.+++.++++.+.
T Consensus 122 ~~l~~~yGl~vdp---~~~V--------~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G 190 (501)
T COG3845 122 KELSERYGLPVDP---DAKV--------ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG 190 (501)
T ss_pred HHHHHHhCCCCCc---ccee--------ecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 8889999986432 4455 7999999999999999999999999999999 9999999999999998654
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
-.|.|.-+..++|||
T Consensus 191 ~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 191 KTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred CEEEEEeccHHHHHHhhCee
Confidence 345566666677764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=284.48 Aligned_cols=199 Identities=13% Similarity=0.151 Sum_probs=153.5
Q ss_pred CCceEEEeEEEEcCC--CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~--~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I~i~g~~ 145 (317)
.++|+++||++.|+. +..+ |+|+||+|++||++||+|+||||||||+|+|+|+++ | ++|+|.++|++
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~ 326 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR-----VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKP 326 (506)
T ss_pred CceEEEecCcccccccccccc-----ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEE
Confidence 357999999999952 2233 999999999999999999999999999999999997 5 89999999976
Q ss_pred CceeeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc--cCC----C
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS--MEG----D 216 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~--~~~----~ 216 (317)
+..... ..++ ..++|++|++. .+...+|+.+|+.+... +.. .
T Consensus 327 ----------------------~~~~~~~~~~~-------~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 377 (506)
T PRK13549 327 ----------------------VKIRNPQQAIA-------QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRID 377 (506)
T ss_pred ----------------------CCCCCHHHHHH-------CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccC
Confidence 322221 1122 23999999863 23446799999986421 111 1
Q ss_pred ChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
.....+++.++++.+++. ... +... .+||||||||++||||++.+|+++||||||+ ||+.+++.+.+
T Consensus 378 ~~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 446 (506)
T PRK13549 378 DAAELKTILESIQRLKVKTASP---ELAI--------ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK 446 (506)
T ss_pred hHHHHHHHHHHHHhcCccCCCc---cccc--------ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence 122345577788888873 121 3344 7999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.|+++.+. ..|++..+..+||||
T Consensus 447 ~l~~l~~~g~tvi~~sHd~~~~~~~~d~v 475 (506)
T PRK13549 447 LINQLVQQGVAIIVISSELPEVLGLSDRV 475 (506)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhCCEE
Confidence 99998653 567777777778774
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=252.05 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=129.1
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.++||+|.|+.+ ..+ |+++||+|++||+++|+||||||||||+++|+|+++|.. |++|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~-- 73 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI-----LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIP-- 73 (202)
T ss_pred eEEEEccEEEeccCCCCcee-----eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEE--
Confidence 57899999999643 223 999999999999999999999999999999999997321 579999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+.... ...++ .++|++|++.+++ .+||++|+.+.....
T Consensus 74 --------------------~~~~~-~~~~~-------~i~~~~q~~~~~~-~~tv~~~l~~~~~~~------------- 111 (202)
T cd03233 74 --------------------YKEFA-EKYPG-------EIIYVSEEDVHFP-TLTVRETLDFALRCK------------- 111 (202)
T ss_pred --------------------Cccch-hhhcc-------eEEEEecccccCC-CCcHHHHHhhhhhhc-------------
Confidence 22221 12223 3999999876443 479999987542100
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
. +... ..||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.++++.+.
T Consensus 112 -----~-------~~~~--------~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 112 -----G-------NEFV--------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167 (202)
T ss_pred -----c-------ccch--------hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 1 1222 6899999999999999999999999999999 9999999999999998653
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=255.78 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=140.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECcccCce
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g~~~~~ 148 (317)
||+++||++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|++ + |++|+|.++|.+
T Consensus 1 ~i~~~nl~~~~~~~-~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~--- 66 (248)
T PRK09580 1 MLSIKDLHVSVEDK-AI-----LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD--- 66 (248)
T ss_pred CeEEEEEEEEeCCe-ee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCc---
Confidence 58999999999754 34 99999999999999999999999999999999994 6 899999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh----ccCCC---C-hHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK----SMEGD---S-DVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~----~~~~~---~-~~~ 220 (317)
+...+....++ ..++|++|++.++. .++...++.+.. ..... . ...
T Consensus 67 -------------------~~~~~~~~~~~------~~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (248)
T PRK09580 67 -------------------LLELSPEDRAG------EGIFMAFQYPVEIP-GVSNQFFLQTALNAVRSYRGQEPLDRFDF 120 (248)
T ss_pred -------------------cccCCHHHHhh------cceEEEecCchhcc-chhHHHHHHHhhhhhhcccccccchHHHH
Confidence 33344332221 13899999876443 234444432211 00010 1 112
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+.+.++++.++++.. .. .... . ..||+||+||++||||++.+|+++||||||+ ||+.++..+.+.++++
T Consensus 121 ~~~~~~~l~~~~l~~~-~~-~~~~-----~--~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l 191 (248)
T PRK09580 121 QDLMEEKIALLKMPED-LL-TRSV-----N--VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191 (248)
T ss_pred HHHHHHHHHHcCCChh-hc-ccCC-----C--CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3445667777776411 11 1111 0 2799999999999999999999999999999 9999999999999887
Q ss_pred HHh------cCCCcchhhcc-cCC
Q 021147 300 LEH------ADRNLSCKSCA-RNK 316 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~-~~~ 316 (317)
.+. ..|+...+... +|+
T Consensus 192 ~~~~~tiii~sH~~~~~~~~~~d~ 215 (248)
T PRK09580 192 RDGKRSFIIVTHYQRILDYIKPDY 215 (248)
T ss_pred HhCCCEEEEEeCCHHHHHhhhCCE
Confidence 542 34555555554 554
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=282.77 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=153.1
Q ss_pred CCceEEEeEEEEcCC---C-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC-c
Q 021147 69 GSLTDAKNKILSYTP---G-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-S 143 (317)
Q Consensus 69 ~~~I~~~nls~~y~~---~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~-g 143 (317)
.++|+++||+++|++ + ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++ |
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g 346 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA-----VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVG 346 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE-----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecC
Confidence 458999999999953 1 234 999999999999999999999999999999999999 999999996 5
Q ss_pred ccCceeeEecccCCCCcccccceeeccCCh---HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDS---SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
.+.. .+...+. ..++++ +||+||++.+++ .+|+.+|+.+...........
T Consensus 347 ~~~~-------------------~~~~~~~~~~~~~~~~-------i~~v~q~~~l~~-~~tv~e~l~~~~~~~~~~~~~ 399 (520)
T TIGR03269 347 DEWV-------------------DMTKPGPDGRGRAKRY-------IGILHQEYDLYP-HRTVLDNLTEAIGLELPDELA 399 (520)
T ss_pred Cccc-------------------cccccchhhHHHHhhh-------EEEEccCcccCC-CCcHHHHHHHHHHcCCCHHHH
Confidence 3200 0111111 122333 999999986554 589999998642211111223
Q ss_pred HHHHHHHHHHcCCCcc---cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYL---SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~---~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
.+++.++++.+++... .+. +..+ .+|||||+||++||||++.+|+++||||||+ ||+.++..+.+.|
T Consensus 400 ~~~~~~~l~~~~l~~~~~~~~~-~~~~--------~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 400 RMKAVITLKMVGFDEEKAEEIL-DKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HHHHHHHHHhCCCCCccchhhh-hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3456778888887421 011 2333 7999999999999999999999999999999 9999999999999
Q ss_pred HHHHHh-------cCCCcchhhcccCCC
Q 021147 297 RYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 297 ~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+++.+. ..|++..+...+|||
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i 498 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRA 498 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEE
Confidence 987643 567777777777764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=290.45 Aligned_cols=232 Identities=16% Similarity=0.075 Sum_probs=176.7
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHccccccc----------------------------c---CCCCceEEEeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR----------------------------T---RIGSLTDAKNK 77 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~---~~~~~I~~~nl 77 (317)
.+..+.......+..+.+...+..|+.++++..++.. . ...++|+++||
T Consensus 378 ~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv 457 (659)
T TIGR00954 378 KAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENI 457 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEee
Confidence 3467777888889999999999999999986422110 0 12347999999
Q ss_pred EEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCC
Q 021147 78 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI 157 (317)
Q Consensus 78 s~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l 157 (317)
+|.|+++..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 458 ~~~~~~~~~i-----l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~~------------- 514 (659)
T TIGR00954 458 PLVTPNGDVL-----IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPAK------------- 514 (659)
T ss_pred EEECCCCCee-----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecCC-------------
Confidence 9999754444 999999999999999999999999999999999999 99999985432
Q ss_pred CCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC--CChHHHHHHHHHHHHcCCCc
Q 021147 158 PRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG--DSDVEKQYNQIVATTFNCPY 235 (317)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~a~~~~l~~ 235 (317)
+. ++|+||++.+++. |++||+.++..... ......+++.++++.++++.
T Consensus 515 --------------------~~-------i~~v~Q~~~l~~~--tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 565 (659)
T TIGR00954 515 --------------------GK-------LFYVPQRPYMTLG--TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH 565 (659)
T ss_pred --------------------Cc-------EEEECCCCCCCCc--CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH
Confidence 12 9999999987765 99999987532110 01112345778899999842
Q ss_pred -ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCcchh
Q 021147 236 -LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNLSCK 310 (317)
Q Consensus 236 -~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~~~~ 310 (317)
...+.|+++... .+ ..||||||||+++|||++++|+++||||||+ ||+.+++.+.+.+++.-. ...|+++.+
T Consensus 566 ~~~~~~g~~~~~~-~~--~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~ 642 (659)
T TIGR00954 566 ILEREGGWSAVQD-WM--DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642 (659)
T ss_pred HHhhcCCcccccc-cc--cCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH
Confidence 223556777543 34 6899999999999999999999999999999 999999999998877410 134555544
Q ss_pred hcccCC
Q 021147 311 SCARNK 316 (317)
Q Consensus 311 ~~~~~~ 316 (317)
+.+|+
T Consensus 643 -~~~d~ 647 (659)
T TIGR00954 643 -KYHEY 647 (659)
T ss_pred -HhCCE
Confidence 34555
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=283.99 Aligned_cols=219 Identities=12% Similarity=0.088 Sum_probs=156.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECccc-Cce
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV-GDG 148 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g~~-~~~ 148 (317)
|+++||+++|++. .+ |+++||+|.+|++++|+||||||||||+|+|+|++ + |++|+|.++|.. -.+
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDGK-EV-----LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECCe-Ee-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 5789999999653 34 99999999999999999999999999999999996 7 899999998642 234
Q ss_pred eeEecccCCCCcccccce-------eeccCChHHHHHHHHHhhhhccccccc-cccccchhhHHHHHHhhhcc-CCCChH
Q 021147 149 TYFLQEYTIPRGVRHGEL-------VIRRSDSSSLRNRMRCKAHKIGCEPSV-IRKVNFVIFVVDGLAVLKSM-EGDSDV 219 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~ig~v~Q~-~~~~~~~~tv~eni~~~~~~-~~~~~~ 219 (317)
+|.+|+...-..+.+.+. .....+.... ..+.+.++|++|+ +.++. .+|+++|+.+.... ......
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~ 144 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR----RRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHH----HHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHH
Confidence 566663211111100010 0111111110 1112349999997 44443 57999999875322 111223
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+++.++++.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|++
T Consensus 145 ~~~~~~~~l~~~gl~~~~---~~~~--------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRI---THIA--------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred HHHHHHHHHHHcCChhhh---hcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 345677889998874221 2233 6999999999999999999999999999999 999999999999999
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 214 l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 214 AVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred HHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 8543 567777777777774
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=248.94 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=133.7
Q ss_pred ceEEEeEEEEcCCC-----CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc--cCCCCCCcCcEEEECc
Q 021147 71 LTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS 143 (317)
Q Consensus 71 ~I~~~nls~~y~~~-----~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~--~p~~~~p~~G~I~i~g 143 (317)
.|+++||+++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~-----l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL-----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc-----eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECC
Confidence 48999999999752 334 99999999999999999999999999999999999 8 9999999999
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 223 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~ 223 (317)
++ +.. ..+++. ++|++|++.++. .+|+.+|+.+....
T Consensus 73 ~~----------------------~~~---~~~~~~-------i~~~~q~~~~~~-~~t~~~~i~~~~~~---------- 109 (194)
T cd03213 73 RP----------------------LDK---RSFRKI-------IGYVPQDDILHP-TLTVRETLMFAAKL---------- 109 (194)
T ss_pred Ee----------------------Cch---Hhhhhe-------EEEccCcccCCC-CCcHHHHHHHHHHh----------
Confidence 86 221 123333 999999986554 46899888643100
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
..||+||+||+++|||++.+|+++|||||++ ||+.+++.+.+.|+++.+.
T Consensus 110 -----------------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 160 (194)
T cd03213 110 -----------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT 160 (194)
T ss_pred -----------------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 1599999999999999999999999999999 9999999999999987642
Q ss_pred ------cCCCcc-hhhcccCCC
Q 021147 303 ------ADRNLS-CKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~-~~~~~~~~~ 317 (317)
..|++. .+...+|++
T Consensus 161 ~~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 161 GRTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred CCEEEEEecCchHHHHHhcCEE
Confidence 345554 344555653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=284.11 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=153.2
Q ss_pred CCceEEEeEEEEcCC----------CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 69 GSLTDAKNKILSYTP----------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 69 ~~~I~~~nls~~y~~----------~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+++||++.|+. ...+ |++|||+|++|+++||+||||||||||+|+|+|++ |++|+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------~~~G~ 341 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVV-----VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------NSQGE 341 (529)
T ss_pred CCcccccCcEEEeecCcccccccccccee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------CCCcE
Confidence 458999999999952 1233 99999999999999999999999999999999997 45899
Q ss_pred EEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhc-cC--
Q 021147 139 VTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKS-ME-- 214 (317)
Q Consensus 139 I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~-~~-- 214 (317)
|+++|++ +...+...... +.+.+||+||++. .+...+|+.+|+.+... +.
T Consensus 342 i~~~g~~----------------------i~~~~~~~~~~----~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~ 395 (529)
T PRK15134 342 IWFDGQP----------------------LHNLNRRQLLP----VRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT 395 (529)
T ss_pred EEECCEE----------------------ccccchhhHHH----hhhceEEEEeCchhhcCCcccHHHHHHHHHHhcccc
Confidence 9999976 33333222110 1123999999873 24445799999987532 11
Q ss_pred CCChHHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 215 GDSDVEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
.......+++.++++.+++. ... +... .+||||||||++||||++.+|+++||||||+ ||+.++..+
T Consensus 396 ~~~~~~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 396 LSAAQREQQVIAVMEEVGLDPETR---HRYP--------AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred CChHHHHHHHHHHHHHcCCCHHHH---hcCC--------ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHH
Confidence 11122345567788888874 121 2333 6999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|++..+..++|||
T Consensus 465 ~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 9999988643 567777777777774
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=259.26 Aligned_cols=200 Identities=19% Similarity=0.182 Sum_probs=161.2
Q ss_pred CceEEEeEEEEcCCCCc------------------cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCC
Q 021147 70 SLTDAKNKILSYTPGAW------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~------------------~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~ 131 (317)
..|+++||++-|+.+.. .-.+-+++|+||+|+.||++.|.|-||||||||+|+|++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 35889999998864311 012345899999999999999999999999999999999999
Q ss_pred CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh
Q 021147 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 211 (317)
Q Consensus 132 ~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~ 211 (317)
|++|+|+++|.+ +...+...++.. ..+++++|||...|++ ++||.+|..|+.
T Consensus 80 --pt~G~ilv~g~d----------------------i~~~~~~~Lr~~---Rr~~~sMVFQ~FaLlP-hrtVl~Nv~fGL 131 (386)
T COG4175 80 --PTRGEILVDGKD----------------------IAKLSAAELREL---RRKKISMVFQSFALLP-HRTVLENVAFGL 131 (386)
T ss_pred --CCCceEEECCcc----------------------hhcCCHHHHHHH---Hhhhhhhhhhhhcccc-chhHhhhhhcce
Confidence 999999999997 555666555432 1235999999988776 799999999987
Q ss_pred ccCCC-ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 212 SMEGD-SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 212 ~~~~~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
....- ..+..++..+.++.+|+..+ .+.|+ .+|||||+||+.+||||+.+|+++++|||+| |||--+
T Consensus 132 ev~Gv~~~er~~~a~~~l~~VgL~~~--~~~yp---------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 132 EVQGVPKAEREERALEALELVGLEGY--ADKYP---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred eecCCCHHHHHHHHHHHHHHcCchhh--hhcCc---------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 65443 34566777888999998432 34677 5999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhh
Q 021147 290 LIIVDMLRYCLEHADRNLSCKS 311 (317)
Q Consensus 290 ~~l~~~l~~l~~~~~~~~~~~~ 311 (317)
..+++-|.++-+...+-+-+++
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFit 222 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFIT 222 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEe
Confidence 9999999888665444444443
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=243.65 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=151.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++.|+++|+.++|+.... |++|||+..+|+++.|||.|||||||++|||+-|.. |++|+|.++|...+.
T Consensus 4 ~~~l~v~dlHK~~G~~eV------LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEHEV------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccchh------hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 346999999999987654 999999999999999999999999999999999999 999999999985220
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCChHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDSDVEKQYNQI 226 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~~~~~~~~~~ 226 (317)
... +.+. +...+.++ +..+..++|+|||...++. .+||.+|+.-..- ......+..++...
T Consensus 73 --k~~--------~~G~--l~~ad~~q----~~r~Rs~L~mVFQ~FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~ 135 (256)
T COG4598 73 --KRD--------KDGQ--LKPADKRQ----LQRLRTRLGMVFQHFNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEK 135 (256)
T ss_pred --eeC--------CCCC--eeeCCHHH----HHHHHHHhhHhhhhcchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHH
Confidence 000 0011 11233332 3333455999999988665 7999999853321 12233455667778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+..+|+. ...+.|+ ..|||||+||++|||||+.+|.+++|||||| |||+---.+...++++.+.
T Consensus 136 ~L~kVGi~--ek~~~YP---------~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE 201 (256)
T COG4598 136 YLAKVGIA--EKADAYP---------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE 201 (256)
T ss_pred HHHHhCch--hhhhcCc---------cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 88888873 2334788 5999999999999999999999999999999 9999999999999998654
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=254.63 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=139.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC----cCcEEEECcccCceeeEecccCCCCcccccceee
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVI 168 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p----~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~ 168 (317)
|+|+||+|++|++++|+||||||||||+|+|+|+++ | ++|+|+++|++ +
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~----------------------~ 54 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRP----------------------L 54 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEe----------------------c
Confidence 899999999999999999999999999999999999 7 89999999976 3
Q ss_pred ccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHHcCCCcc-cCCCCCCEE
Q 021147 169 RRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTFNCPYL-SFRDDKPVV 245 (317)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~l~~~~~~~ 245 (317)
... ...++ .++|++|++. .+...+|+.+|+.+..... .......+++.++++.++++.. ... +...
T Consensus 55 ~~~--~~~~~-------~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~- 123 (230)
T TIGR02770 55 LPL--SIRGR-------HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL-KKYP- 123 (230)
T ss_pred hhh--hhhhh-------eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHH-hCCh-
Confidence 221 11112 3999999985 4555678999886543211 1112334567788998887411 011 2233
Q ss_pred EEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 246 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 246 i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|++..+...+|+|
T Consensus 124 -------~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 124 -------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred -------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988652 456777777777764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=254.25 Aligned_cols=174 Identities=17% Similarity=0.145 Sum_probs=136.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++ +...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----------------------~~~~~ 53 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQ----------------------ITEPG 53 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE----------------------CCCCC
Confidence 578999999999999999999999999999999999 999999999976 32222
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCC-hHHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDS-DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
. . .+|++|++.++. .+|+.+|+.+... ..... ....+++.++++.+++.... +...
T Consensus 54 ~-----~-------~~~v~q~~~l~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----- 112 (230)
T TIGR01184 54 P-----D-------RMVVFQNYSLLP-WLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA---DKRP----- 112 (230)
T ss_pred h-----h-------heEEecCcccCC-CCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH---cCCh-----
Confidence 1 1 479999886554 5799999987521 11111 22334567788888874211 2233
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+. ..|++..+...+|+|
T Consensus 113 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 185 (230)
T TIGR01184 113 ---GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRV 185 (230)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 6899999999999999999999999999999 9999999999999987643 456666666777764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=281.18 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=153.1
Q ss_pred CceEEEeEEEEcCC--CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~--~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I~i~g~~~ 146 (317)
.+|+++|+++.|++ +..+ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~- 324 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKR-----VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKP- 324 (500)
T ss_pred ceEEEeCCcccccccccccc-----cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEE-
Confidence 47999999999942 2234 999999999999999999999999999999999998 6 79999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc--cC---C-CC
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS--ME---G-DS 217 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~--~~---~-~~ 217 (317)
+..... ..+++ .+||++|++. .+...+|+++|+.+... .. . ..
T Consensus 325 ---------------------~~~~~~~~~~~~-------~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~ 376 (500)
T TIGR02633 325 ---------------------VDIRNPAQAIRA-------GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376 (500)
T ss_pred ---------------------CCCCCHHHHHhC-------CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence 322221 22233 3999999963 23446799999976421 11 1 11
Q ss_pred hHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 218 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
....+++.++++.+++... .. ...+ ..||||||||++||||++.+|+++||||||+ ||+.++..+.+.+
T Consensus 377 ~~~~~~~~~~l~~~~l~~~-~~-~~~~--------~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 446 (500)
T TIGR02633 377 AAELQIIGSAIQRLKVKTA-SP-FLPI--------GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446 (500)
T ss_pred HHHHHHHHHHHHhcCccCC-Cc-cCcc--------ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 2234556778888886311 11 3344 6999999999999999999999999999999 9999999999999
Q ss_pred HHHHHh------cCCCcchhhcccCCC
Q 021147 297 RYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 297 ~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+++.+. +.|++..+..++|||
T Consensus 447 ~~l~~~g~tviivsHd~~~~~~~~d~v 473 (500)
T TIGR02633 447 NQLAQEGVAIIVVSSELAEVLGLSDRV 473 (500)
T ss_pred HHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 998653 677778888888774
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=246.49 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=133.5
Q ss_pred CceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..|+++|+++.|++. ..+ |+++||+|++|++++|+||||||||||+++|+|++.+. |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~- 72 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL-----LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRP- 72 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe-----EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEe-
Confidence 468999999999641 233 99999999999999999999999999999999986321 789999999975
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+. ..+++. ++|++|++.++. ..|+++|+.+...
T Consensus 73 ---------------------~~----~~~~~~-------i~~~~q~~~~~~-~~tv~~~l~~~~~-------------- 105 (192)
T cd03232 73 ---------------------LD----KNFQRS-------TGYVEQQDVHSP-NLTVREALRFSAL-------------- 105 (192)
T ss_pred ---------------------hH----HHhhhc-------eEEecccCcccc-CCcHHHHHHHHHH--------------
Confidence 32 223333 999999886543 4789999875320
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+ ..||+||+||+++|||++.+|+++|+|||++ ||+.++..+.+.++++.+.
T Consensus 106 -~------------------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 160 (192)
T cd03232 106 -L------------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQA 160 (192)
T ss_pred -H------------------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 0599999999999999999999999999999 9999999999999987642
Q ss_pred ---cCCCcch-hhcccCCC
Q 021147 303 ---ADRNLSC-KSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~-~~~~~~~~ 317 (317)
..|++.. +...+|||
T Consensus 161 iiivtH~~~~~~~~~~d~i 179 (192)
T cd03232 161 ILCTIHQPSASIFEKFDRL 179 (192)
T ss_pred EEEEEcCChHHHHhhCCEE
Confidence 3355542 44556653
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=251.50 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=137.5
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
+.++|++++|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 23 l~~~~~~~~~~~~~-i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~------ 85 (224)
T cd03220 23 LGILGRKGEVGEFW-A-----LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRV------ 85 (224)
T ss_pred hhhhhhhhhcCCeE-E-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE------
Confidence 77888888887643 3 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a~~ 230 (317)
... .... .++ ...+|+.+|+.+...... ......+++.++++.
T Consensus 86 ----------------~~~-----~~~~-------~~~--------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 129 (224)
T cd03220 86 ----------------SSL-----LGLG-------GGF--------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF 129 (224)
T ss_pred ----------------chh-----hccc-------ccC--------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 110 0000 222 124689999986543211 112233456677777
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
+++.... +..+ .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 130 ~~l~~~~---~~~~--------~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~ 198 (224)
T cd03220 130 SELGDFI---DLPV--------KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILV 198 (224)
T ss_pred cCChhhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 7764221 2333 6899999999999999999999999999999 9999999999999987543 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+...+|++
T Consensus 199 sH~~~~~~~~~d~i 212 (224)
T cd03220 199 SHDPSSIKRLCDRA 212 (224)
T ss_pred eCCHHHHHHhCCEE
Confidence 35555555556653
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=241.85 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=126.7
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|++++|+++..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 i~~~~~~~~~~~~~~~-----l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~------ 64 (166)
T cd03223 1 IELENLSLATPDGRVL-----LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEGE------ 64 (166)
T ss_pred CEEEEEEEEcCCCCee-----eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCCc------
Confidence 5789999999644344 999999999999999999999999999999999999 999999976631
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
.++|++|++.++ ..|+.+|+.+.
T Consensus 65 ----------------------------------~i~~~~q~~~~~--~~tv~~nl~~~--------------------- 87 (166)
T cd03223 65 ----------------------------------DLLFLPQRPYLP--LGTLREQLIYP--------------------- 87 (166)
T ss_pred ----------------------------------eEEEECCCCccc--cccHHHHhhcc---------------------
Confidence 288898887644 45899998642
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCc
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNL 307 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~ 307 (317)
.. .+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.. ...|+.
T Consensus 88 -----------~~--------~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~ 148 (166)
T cd03223 88 -----------WD--------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRP 148 (166)
T ss_pred -----------CC--------CCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCCh
Confidence 01 5899999999999999999999999999999 999999999999988621 244555
Q ss_pred chhhcccCCC
Q 021147 308 SCKSCARNKV 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
... +.+|++
T Consensus 149 ~~~-~~~d~i 157 (166)
T cd03223 149 SLW-KFHDRV 157 (166)
T ss_pred hHH-hhCCEE
Confidence 543 356653
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=247.53 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=130.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccCcee
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
|+++||++.|++. .+ |+|+||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~---- 65 (200)
T cd03217 1 LEIKDLHVSVGGK-EI-----LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGED---- 65 (200)
T ss_pred CeEEEEEEEeCCE-Ee-----eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEE----
Confidence 5789999999753 34 9999999999999999999999999999999999 46 899999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+.....+ ..++|+||++.+++ ..++.+++ +
T Consensus 66 ------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~~~~~~l---------------------~ 99 (200)
T cd03217 66 ------------------ITDLPPEERAR------LGIFLAFQYPPEIP-GVKNADFL---------------------R 99 (200)
T ss_pred ------------------CCcCCHHHHhh------CcEEEeecChhhcc-CccHHHHH---------------------h
Confidence 43444322211 23999999876543 23444433 0
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
... ..||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 100 -----------~~~---------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 100 -----------YVN---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred -----------hcc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 111 3799999999999999999999999999999 9999999999999998643
Q ss_pred cCCCcchhhc-ccCCC
Q 021147 303 ADRNLSCKSC-ARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~-~~~~~ 317 (317)
..|++..+.. .+|++
T Consensus 160 ~sh~~~~~~~~~~d~i 175 (200)
T cd03217 160 ITHYQRLLDYIKPDRV 175 (200)
T ss_pred EecCHHHHHHhhCCEE
Confidence 3456666655 46653
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=234.22 Aligned_cols=184 Identities=19% Similarity=0.221 Sum_probs=148.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++|+++.|+..+. |-||+|+-+.||.+.++||||+|||||+|.|.-+.- |.+|+..+.|+.-.
T Consensus 2 sirv~~in~~yg~~q~------lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd--- 67 (242)
T COG4161 2 SIQLNGINCFYGAHQA------LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFD--- 67 (242)
T ss_pred ceEEcccccccccchh------eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccc---
Confidence 3889999999987754 999999999999999999999999999999999988 99999999887411
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCCChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~~~~~~~~~~~~a 228 (317)
+..... .+.+.++.+.+|+|+|..++++ .+||.+|+--.... .-..+....+..+++
T Consensus 68 -----------------~s~~~~---~k~i~~lr~~vgmvfqqy~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ell 126 (242)
T COG4161 68 -----------------FSKTPS---DKAIRDLRRNVGMVFQQYNLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLL 126 (242)
T ss_pred -----------------cccCcc---HHHHHHHHHhhhhhhhhhccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHH
Confidence 222221 1334445556999999988665 79999998543211 222345566778888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.+.+.. +.+.++ ..|||||+||++|||||+..|.+++|||||+ |||+-...+.++|+++.
T Consensus 127 krlrl~~--~adr~p---------lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~ 188 (242)
T COG4161 127 KRLRLKP--YADRYP---------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188 (242)
T ss_pred HHhcccc--ccccCc---------eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH
Confidence 8888732 344677 4999999999999999999999999999999 99999999999999984
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=239.46 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=118.4
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||++.|++. .+ ++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 1 l~~~~l~~~~~~~-~v-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~------ 63 (163)
T cd03216 1 LELRGITKRFGGV-KA-----LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKE------ 63 (163)
T ss_pred CEEEEEEEEECCe-EE-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE------
Confidence 5799999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred ecccCCCCcccccceeeccCChHH-HHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+... .++ .++|++|
T Consensus 64 ----------------~~~~~~~~~~~~-------~i~~~~q-------------------------------------- 82 (163)
T cd03216 64 ----------------VSFASPRDARRA-------GIAMVYQ-------------------------------------- 82 (163)
T ss_pred ----------------CCcCCHHHHHhc-------CeEEEEe--------------------------------------
Confidence 22222211 111 2555444
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------c
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------A 303 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~ 303 (317)
||+||+||+++|||++.+|+++||||||+ ||+.+++.+.+.++++.+. .
T Consensus 83 ------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 138 (163)
T cd03216 83 ------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138 (163)
T ss_pred ------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 89999999999999999999999999999 9999999999999988542 3
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+...+||+
T Consensus 139 sh~~~~~~~~~d~~ 152 (163)
T cd03216 139 SHRLDEVFEIADRV 152 (163)
T ss_pred eCCHHHHHHhCCEE
Confidence 45566566666653
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.67 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=147.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I~i~g~~~~ 147 (317)
.++|+++|+++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+.+ | ++|+|+++|++.
T Consensus 258 ~~~l~~~~l~~~~~~~~-i-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~- 325 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP-I-----LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRR- 325 (490)
T ss_pred CceEEEeceEEEECCee-E-----EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccC-
Confidence 45899999999997543 4 999999999999999999999999999999999876 5 699999999751
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc-hhhHHHHHHhhhc-----cCCCChHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF-VIFVVDGLAVLKS-----MEGDSDVEK 221 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~-~~tv~eni~~~~~-----~~~~~~~~~ 221 (317)
.........++. |||++|++.++.. ..++.+++.+... +........
T Consensus 326 --------------------~~~~~~~~~~~~-------i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
T PRK10938 326 --------------------GSGETIWDIKKH-------IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ 378 (490)
T ss_pred --------------------CCCCCHHHHHhh-------ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHH
Confidence 011122223333 9999998765432 2456666543211 111112234
Q ss_pred HHHHHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 222 ~~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+++.++++.+++.. .. ..++ .+||||||||+++|||++.+|+++||||||+ ||+.+...+.+.|+++
T Consensus 379 ~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 379 KLAQQWLDILGIDKRTA---DAPF--------HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447 (490)
T ss_pred HHHHHHHHHcCCchhhc---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 56778888888742 22 3344 7999999999999999999999999999999 9999999999999998
Q ss_pred HHh-------cCCCcchhhc-ccCCC
Q 021147 300 LEH-------ADRNLSCKSC-ARNKV 317 (317)
Q Consensus 300 ~~~-------~~~~~~~~~~-~~~~~ 317 (317)
.+. ..|+...+.. ++|+|
T Consensus 448 ~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 448 ISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred HhcCCcEEEEEecchhhhhhhhheeE
Confidence 643 3355666654 45553
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=252.77 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=137.1
Q ss_pred CCceEEEeEEEEcCCCCc---cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPGAW---IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~---~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+.+++++||++.|+.+.. ...+.|++||||+|++||+++|||+||||||||.|+|.||++ |++|+|+++|++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~ 76 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKD 76 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcc
Confidence 457999999999964321 112456999999999999999999999999999999999999 999999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
+..++. .+..+++.
T Consensus 77 ----------------------i~~~~~--------------------------------------------~~~~~~v~ 90 (268)
T COG4608 77 ----------------------ITKLSK--------------------------------------------EERRERVL 90 (268)
T ss_pred ----------------------hhhcch--------------------------------------------hHHHHHHH
Confidence 222221 12233466
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.++++.. ....|+ .+|||||+||++|||||+.+|+++|+|||+| ||...+..+.+++.++.+.
T Consensus 91 elL~~Vgl~~~-~~~ryP---------helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 91 ELLEKVGLPEE-FLYRYP---------HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred HHHHHhCCCHH-HhhcCC---------cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 77777776422 223577 5999999999999999999999999999999 9999999999999998654
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
-.|+++.+..++|||
T Consensus 161 lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 161 LTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred CeEEEEEEEHHhhhhhcccE
Confidence 578899999999885
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=261.68 Aligned_cols=253 Identities=13% Similarity=0.123 Sum_probs=188.2
Q ss_pred cccccccccccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCc-----cccc
Q 021147 21 PVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAW-----IENV 90 (317)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~-----~~~~ 90 (317)
.+-|+...+-.|..-.....-..|....-.+.+ .+++..|.-.. ...+.++.++|...|+-+.. +..+
T Consensus 223 ~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr--~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~ 300 (534)
T COG4172 223 KFADRVYVMQHGEIVETGTTETLFAAPQHPYTR--KLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHL 300 (534)
T ss_pred HhhhhEEEEeccEEeecCcHHHHhhCCCChHHH--HHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchhe
Confidence 344555666666665555544444443333333 45655544322 12357999999999953321 2235
Q ss_pred cCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeecc
Q 021147 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRR 170 (317)
Q Consensus 91 ~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~ 170 (317)
.|+++|||++++||++||||+||||||||-.+|.+|++ +. |+|+|+|++ +..
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I~F~G~~----------------------i~~ 352 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEIRFDGQD----------------------IDG 352 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceEEECCcc----------------------ccc
Confidence 67999999999999999999999999999999999997 65 999999997 555
Q ss_pred CChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc--CC-CChHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 171 SDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM--EG-DSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 171 ~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~--~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
++.+.++.. .+++-+|||||+ -+++.+||.+-|.-+..- +. ...+..+++.++++.+|++... .+.|+
T Consensus 353 ~~~~~mrpl----R~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~-r~RYP--- 424 (534)
T COG4172 353 LSRKEMRPL----RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT-RNRYP--- 424 (534)
T ss_pred cChhhhhhh----hhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH-hhcCC---
Confidence 555444322 234999999997 678889999888755422 12 2234567788999999995322 23688
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
.++||||||||+||||++.+|++++|||||| ||..-+..+.++++++-+. -+|++.++..+||+|
T Consensus 425 ------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~v 497 (534)
T COG4172 425 ------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV 497 (534)
T ss_pred ------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceE
Confidence 5999999999999999999999999999999 9999999999999998654 467888888888875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=295.81 Aligned_cols=214 Identities=15% Similarity=0.113 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcccccc-----------ccCCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEE
Q 021147 40 SWDSLVDQRRRDAVFREVLQSYDQL-----------RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (317)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaI 108 (317)
....+.....+.+|+.|..+.+++. ..+..+.|+|+|++.+|..+.+.+ |+||||+|+|||.+||
T Consensus 1096 ~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~V----Lk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLV----LKGISFTIKPGEKVGI 1171 (1381)
T ss_pred HHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcch----hcCceEEEcCCceEEE
Confidence 3344445667888998887754441 113457899999999997664333 9999999999999999
Q ss_pred EcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc
Q 021147 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG 188 (317)
Q Consensus 109 vG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig 188 (317)
||.+|||||||+++|.++.+ |.+|+|.|||.+ +.++....+|++ ++
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e-----~~~G~I~IDgvd----------------------I~~igL~dLRsr-------ls 1217 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVE-----PAEGEILIDGVD----------------------ISKIGLHDLRSR-------LS 1217 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcC-----ccCCeEEEcCee----------------------cccccHHHHHhc-------Ce
Confidence 99999999999999999999 999999999988 788999999998 99
Q ss_pred ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 189 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 189 ~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
++||+|.+|.+ |++.|+.-.+ +-.++++.++++.+.+. +..+|.+.+..+.+.| .++|-||||-+++|
T Consensus 1218 IIPQdPvLFsG--TvR~NLDPf~------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG--~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG--TVRFNLDPFD------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG--ENFSVGQRQLLCLA 1287 (1381)
T ss_pred eeCCCCceecC--ccccccCccc------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCC--ccCChHHHHHHHHH
Confidence 99999999987 9999985322 22334599999999982 4567889999999999 89999999999999
Q ss_pred ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 267 ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 267 ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
|||+++++++||||+|+ +|+.|...|++.|++..+
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~ 1323 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFK 1323 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc
Confidence 99999999999999999 999999999999998653
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-32 Score=251.29 Aligned_cols=182 Identities=18% Similarity=0.142 Sum_probs=134.7
Q ss_pred HHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 53 VFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 53 ~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+.++++.+++... ...+.|+++|+++. .. .+ |+++||+|++||+++|+|+||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~~-~v-----L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--GA-PV-----LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhcccccccccccCCCCCeEEEEEEEEe--cc-cc-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46677777655433 23457999999985 22 33 99999999999999999999999999999999999
Q ss_pred cCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHH
Q 021147 128 ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 207 (317)
Q Consensus 128 ~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni 207 (317)
+ |++|+|.++|. |+|++|++.++. .|+.+|+
T Consensus 88 ~-----p~~G~I~i~g~------------------------------------------i~yv~q~~~l~~--~tv~enl 118 (282)
T cd03291 88 E-----PSEGKIKHSGR------------------------------------------ISFSSQFSWIMP--GTIKENI 118 (282)
T ss_pred C-----CCCcEEEECCE------------------------------------------EEEEeCcccccc--cCHHHHh
Confidence 9 99999998763 677777765554 3788888
Q ss_pred HhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-C
Q 021147 208 AVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-S 284 (317)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-L 284 (317)
.+..... . .++.++++.+++. ...++.++.+.+..+. ..||+||+||+++|||++.+|+++||||||+ |
T Consensus 119 ~~~~~~~---~---~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~--~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 119 IFGVSYD---E---YRYKSVVKACQLEEDITKFPEKDNTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred hcccccC---H---HHHHHHHHHhCCHHHHHhccccccceecCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 7542211 1 1223444444442 1112333433343444 6999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHH-HHH
Q 021147 285 DPENELIIVDML-RYC 299 (317)
Q Consensus 285 D~~t~~~l~~~l-~~l 299 (317)
|+.++..+.+.+ +++
T Consensus 191 D~~~~~~l~~~ll~~~ 206 (282)
T cd03291 191 DVFTEKEIFESCVCKL 206 (282)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 999999988754 444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=273.85 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=149.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++ .+ |+++||+|.+||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 256 ~~l~~~~l~~------~~-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~---- 315 (501)
T PRK10762 256 VRLKVDNLSG------PG-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHE---- 315 (501)
T ss_pred cEEEEeCccc------CC-----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE----
Confidence 4799999984 13 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc-cC------CCChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS-ME------GDSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~-~~------~~~~~ 219 (317)
+...+.. .+++ .+||+||++. .+...+|+.+|+.+... .. .....
T Consensus 316 ------------------i~~~~~~~~~~~-------~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 370 (501)
T PRK10762 316 ------------------VVTRSPQDGLAN-------GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD 370 (501)
T ss_pred ------------------CCCCCHHHHHHC-------CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH
Confidence 3333322 1222 3999999963 23446799999986421 10 01122
Q ss_pred HHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
..+++.++++.+++. ... +... .+||||||||+++|||++.+|+++||||||+ ||+.++..+.+.|+
T Consensus 371 ~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 439 (501)
T PRK10762 371 EQQAVSDFIRLFNIKTPSM---EQAI--------GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439 (501)
T ss_pred HHHHHHHHHHhcCCCCCCc---cCch--------hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 345567788888873 211 3344 7999999999999999999999999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+..++|||
T Consensus 440 ~~~~~g~tviivtHd~~~~~~~~d~v 465 (501)
T PRK10762 440 QFKAEGLSIILVSSEMPEVLGMSDRI 465 (501)
T ss_pred HHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 98642 567777777777774
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-32 Score=275.52 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=142.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
++||+++||+++|+++..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..+
T Consensus 4 ~~~l~i~~l~~~y~~~~~i-----l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~-~~i 72 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG-IKV 72 (556)
T ss_pred cEEEEEeeEEEEeCCCCee-----eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEE
Confidence 3589999999999722334 999999999999999999999999999999999999 99999998754 356
Q ss_pred eeEecccCCCCcccccceeeccCChHHHH---HHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLR---NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~ 224 (317)
+|+||++.+++..++.++..... ..+. ..........+....+. ...+.-.+.+. ..... ......+++
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~ 145 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGV--AEVKAALDRFNEIYAAYAEPDADF---DALAAEQGELQEIIDAA--DAWDLDSQL 145 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhh--HHHHHHHHHHHHHHHHhccCchhh---HHHHHHHHHHHHHHHhc--CccchHHHH
Confidence 77777766655544433211000 0000 00000000000000000 00000000000 00000 001123456
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH--
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-- 301 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-- 301 (317)
..+++.++++. . ...+ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++..
T Consensus 146 ~~~l~~~gl~~-~---~~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tv 213 (556)
T PRK11819 146 EIAMDALRCPP-W---DAKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTV 213 (556)
T ss_pred HHHHHhCCCCc-c---cCch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeE
Confidence 77888888742 1 3444 7999999999999999999999999999999 999999999999988531
Q ss_pred -hcCCCcchhhcccCCC
Q 021147 302 -HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 -~~~~~~~~~~~~~~~~ 317 (317)
...|++..+..++|+|
T Consensus 214 iiisHd~~~~~~~~d~i 230 (556)
T PRK11819 214 VAVTHDRYFLDNVAGWI 230 (556)
T ss_pred EEEeCCHHHHHhhcCeE
Confidence 3567777777777764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=270.53 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=148.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|+++ . . |++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 266 ~~~l~~~~l~~-----~-~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~--- 326 (510)
T PRK15439 266 APVLTVEDLTG-----E-G-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKE--- 326 (510)
T ss_pred CceEEEeCCCC-----C-C-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEE---
Confidence 34899999993 1 3 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhh----ccCCCChHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLK----SMEGDSDVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~----~~~~~~~~~~~ 222 (317)
+...+..... ...|+|+||++. .+...+|+.+|+.... ..........+
T Consensus 327 -------------------i~~~~~~~~~------~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~ 381 (510)
T PRK15439 327 -------------------INALSTAQRL------ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA 381 (510)
T ss_pred -------------------CCCCCHHHHH------hCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH
Confidence 3333332211 123999999852 2334578999985321 11111122234
Q ss_pred HHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.++++.++++ ... +.+. .+||||||||++||||++.+|+++||||||+ ||+.+++.+.+.|+++.
T Consensus 382 ~~~~~l~~~~l~~~~~---~~~~--------~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 382 VLERYRRALNIKFNHA---EQAA--------RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred HHHHHHHHcCCCCCCc---cCcc--------ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 566788888873 221 3344 7999999999999999999999999999999 99999999999999986
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 451 ~~g~tiIivsHd~~~i~~~~d~i 473 (510)
T PRK15439 451 AQNVAVLFISSDLEEIEQMADRV 473 (510)
T ss_pred hCCCEEEEECCCHHHHHHhCCEE
Confidence 43 667777777778874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=269.94 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=148.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..++++|+++. .+ ++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 256 ~~l~~~~~~~~-----~~-----l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~---- 316 (501)
T PRK11288 256 VRLRLDGLKGP-----GL-----REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKP---- 316 (501)
T ss_pred cEEEEeccccC-----Cc-----ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEE----
Confidence 36999999842 23 999999999999999999999999999999999999 999999999975
Q ss_pred eEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhc-cC---C---CChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKS-ME---G---DSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~-~~---~---~~~~ 219 (317)
+..... ...++ .++|++|++. .+...+|+.+|+.+... .. . ....
T Consensus 317 ------------------~~~~~~~~~~~~-------~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 371 (501)
T PRK11288 317 ------------------IDIRSPRDAIRA-------GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW 371 (501)
T ss_pred ------------------CCCCCHHHHHhC-------CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH
Confidence 322222 12222 3999999873 23346899999876421 10 0 1112
Q ss_pred HHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
..+.+.++++.+++. ... +.+. .+||||||||++||||++.+|+++||||||+ ||+.++..+.++|+
T Consensus 372 ~~~~~~~~l~~~~l~~~~~---~~~~--------~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 440 (501)
T PRK11288 372 EAENADRFIRSLNIKTPSR---EQLI--------MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440 (501)
T ss_pred HHHHHHHHHHhcCcccCCc---cCcc--------ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 234566778888862 211 3344 6999999999999999999999999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|+...+..++||+
T Consensus 441 ~l~~~g~tviivsHd~~~~~~~~d~i 466 (501)
T PRK11288 441 ELAAQGVAVLFVSSDLPEVLGVADRI 466 (501)
T ss_pred HHHhCCCEEEEECCCHHHHHhhCCEE
Confidence 98653 557778888888874
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-32 Score=247.89 Aligned_cols=173 Identities=15% Similarity=0.257 Sum_probs=131.2
Q ss_pred EEcCCCCccccccCceeeeeEec-----CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEec
Q 021147 79 LSYTPGAWIENVGGMTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 79 ~~y~~~~~~~~~~~L~~isl~I~-----~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
|+|++.... +++++|++. +||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~~y~~~~~~-----~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~-------- 62 (246)
T cd03237 1 YTYPTMKKT-----LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDT-------- 62 (246)
T ss_pred CCCcccccc-----cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCce--------
Confidence 456544333 778888876 799999999999999999999999999 999999988742
Q ss_pred ccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC
Q 021147 154 EYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 233 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l 233 (317)
|+|++|++..+ ..+||.+|+.+........ .....++++.+++
T Consensus 63 ---------------------------------i~~~~q~~~~~-~~~tv~e~l~~~~~~~~~~---~~~~~~~l~~l~l 105 (246)
T cd03237 63 ---------------------------------VSYKPQYIKAD-YEGTVRDLLSSITKDFYTH---PYFKTEIAKPLQI 105 (246)
T ss_pred ---------------------------------EEEecccccCC-CCCCHHHHHHHHhhhcccc---HHHHHHHHHHcCC
Confidence 67777765422 2468888886432211111 1224567777776
Q ss_pred CcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCC
Q 021147 234 PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADR 305 (317)
Q Consensus 234 ~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~ 305 (317)
.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+. ..|
T Consensus 106 ~~~~---~~~~--------~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 106 EQIL---DREV--------PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HHHh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4211 2333 6899999999999999999999999999999 9999999999999998643 566
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
++..+...+|+|
T Consensus 175 d~~~~~~~~d~i 186 (246)
T cd03237 175 DIIMIDYLADRL 186 (246)
T ss_pred CHHHHHHhCCEE
Confidence 777777777764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=275.60 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=154.1
Q ss_pred CceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 70 ~~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
++|+++|++++|+++ ..+ |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~- 71 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV-----LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQD- 71 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE-
Confidence 479999999999642 233 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
+...+...+.+. ..+.++|++|++.+++ ..|+.+|+.+...... ......+++.
T Consensus 72 ---------------------i~~~~~~~~~~~---~~~~i~~v~q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~ 126 (648)
T PRK10535 72 ---------------------VATLDADALAQL---RREHFGFIFQRYHLLS-HLTAAQNVEVPAVYAGLERKQRLLRAQ 126 (648)
T ss_pred ---------------------cCcCCHHHHHHH---HhccEEEEeCCcccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444333110 1123999999997654 4689999987543222 2233445667
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... ..||+||+||+++|||++.+|+++|||||++ ||+.+++.+.+.++++.+.
T Consensus 127 ~~l~~lgl~~~~---~~~~--------~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~ 195 (648)
T PRK10535 127 ELLQRLGLEDRV---EYQP--------SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH 195 (648)
T ss_pred HHHHHCCChhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 788888874221 2233 6899999999999999999999999999999 9999999999999987642
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+.....+ +||+
T Consensus 196 tilivsH~~~~~~~-~d~i 213 (648)
T PRK10535 196 TVIIVTHDPQVAAQ-AERV 213 (648)
T ss_pred EEEEECCCHHHHHh-CCEE
Confidence 3455555543 5653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=295.94 Aligned_cols=224 Identities=17% Similarity=0.131 Sum_probs=171.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHcccccccc---CCCCceEEEeEEEEcCCCC-----------c----c----------
Q 021147 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---RIGSLTDAKNKILSYTPGA-----------W----I---------- 87 (317)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~I~~~nls~~y~~~~-----------~----~---------- 87 (317)
.....+..+.++..+.+|+.++|..++.... .....++++|++|.|+... . .
T Consensus 354 ~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1490)
T TIGR01271 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSN 433 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccc
Confidence 4556677788899999999999976543211 1123599999999995310 0 0
Q ss_pred ---ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCccccc
Q 021147 88 ---ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHG 164 (317)
Q Consensus 88 ---~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~ 164 (317)
....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 434 ~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g~-------------------- 488 (1490)
T TIGR01271 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSGR-------------------- 488 (1490)
T ss_pred cccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE--------------------
Confidence 00124999999999999999999999999999999999999 99999998763
Q ss_pred ceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCC
Q 021147 165 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDK 242 (317)
Q Consensus 165 ~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~ 242 (317)
|+|++|++.+++. ||+|||.|+..+. . .+..++++.+++. ...++.|.
T Consensus 489 ----------------------iayv~Q~~~l~~~--Ti~eNI~~g~~~~---~---~~~~~~~~~~~L~~~l~~l~~g~ 538 (1490)
T TIGR01271 489 ----------------------ISFSPQTSWIMPG--TIKDNIIFGLSYD---E---YRYTSVIKACQLEEDIALFPEKD 538 (1490)
T ss_pred ----------------------EEEEeCCCccCCc--cHHHHHHhccccc---h---HHHHHHHHHHhHHHHHHhccccc
Confidence 8999999988764 9999999875321 1 1233444444442 33467788
Q ss_pred CEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH-HHHHHHh-----cCCCcchhhcccC
Q 021147 243 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM-LRYCLEH-----ADRNLSCKSCARN 315 (317)
Q Consensus 243 ~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~-l~~l~~~-----~~~~~~~~~~~~~ 315 (317)
.+.++++| ..||||||||++||||++.+|+++|||||++ ||+.+++.+.+. +..+.+. ..|+++.+.. +|
T Consensus 539 ~t~vg~~g--~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad 615 (1490)
T TIGR01271 539 KTVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-AD 615 (1490)
T ss_pred cccccCcC--CCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CC
Confidence 89999998 8999999999999999999999999999999 999999999985 5555332 4466666654 66
Q ss_pred CC
Q 021147 316 KV 317 (317)
Q Consensus 316 ~~ 317 (317)
+|
T Consensus 616 ~i 617 (1490)
T TIGR01271 616 KI 617 (1490)
T ss_pred EE
Confidence 54
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=298.22 Aligned_cols=197 Identities=10% Similarity=0.106 Sum_probs=156.4
Q ss_pred CCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+|+++||++.|+++ ..+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~a-----L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~-- 2002 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPA-----VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKS-- 2002 (2272)
T ss_pred CceEEEEEEEEEECCCCceE-----EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEE--
Confidence 4579999999999753 334 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~ 226 (317)
+.. +....++. |||+||+..++. .+|++||+.+.... ........+.+.+
T Consensus 2003 --------------------i~~-~~~~~r~~-------IGy~pQ~~~L~~-~LTv~E~L~l~a~l~g~~~~~~~~~v~~ 2053 (2272)
T TIGR01257 2003 --------------------ILT-NISDVHQN-------MGYCPQFDAIDD-LLTGREHLYLYARLRGVPAEEIEKVANW 2053 (2272)
T ss_pred --------------------Ccc-hHHHHhhh-------EEEEeccccCCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 321 22233333 999999887554 58999999875332 2122223445667
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +..+ .+||||||||+++|+|++.+|++++|||||+ ||+.+++.+.+.|+++.+.
T Consensus 2054 lLe~lgL~~~~---dk~~--------~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~T 2122 (2272)
T TIGR01257 2054 SIQSLGLSLYA---DRLA--------GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122 (2272)
T ss_pred HHHHcCCHHHh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 88888874222 3444 7999999999999999999999999999999 9999999999999997543
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|.+..+..+||||
T Consensus 2123 IILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2123 VVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 456666777777774
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=297.71 Aligned_cols=196 Identities=12% Similarity=0.149 Sum_probs=155.3
Q ss_pred CceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..|+++||++.|++ ++.+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~~~~k~a-----L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~d--- 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPA-----VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKD--- 993 (2272)
T ss_pred ceEEEEeEEEEecCCCceE-----EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEE---
Confidence 47999999999953 3334 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+.. +...+++. +||+||+..+++ .+||.||+.+...... ......+++.++
T Consensus 994 -------------------I~~-~~~~~r~~-------IG~~pQ~~~L~~-~LTV~E~L~f~~~lkg~~~~~~~~~v~~l 1045 (2272)
T TIGR01257 994 -------------------IET-NLDAVRQS-------LGMCPQHNILFH-HLTVAEHILFYAQLKGRSWEEAQLEMEAM 1045 (2272)
T ss_pred -------------------Ccc-hHHHHhhc-------EEEEecCCcCCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 321 22333443 999999987654 5899999987543222 222334567788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.... +... .+||||||||+++|||++.+|+++||||||+ ||+.+++.+.++|+++.+.
T Consensus 1046 L~~vgL~~~~---~~~~--------~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TII 1114 (2272)
T TIGR01257 1046 LEDTGLHHKR---NEEA--------QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114 (2272)
T ss_pred HHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9998874222 3333 7999999999999999999999999999999 9999999999999998421
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|+...+...+|||
T Consensus 1115 ltTHdmdea~~laDrI 1130 (2272)
T TIGR01257 1115 MSTHHMDEADLLGDRI 1130 (2272)
T ss_pred EEECCHHHHHHhCCEE
Confidence 345555566666664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-32 Score=271.24 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=143.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++.. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+. .
T Consensus 318 ~~l~~~~l~~~~~~~~-~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~-~-- 383 (530)
T PRK15064 318 NALEVENLTKGFDNGP-L-----FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA-N-- 383 (530)
T ss_pred ceEEEEeeEEeeCCce-e-----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce-E--
Confidence 4899999999997543 4 999999999999999999999999999999999999 999999987642 1
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+||++|++. .+...+|+.+|+.+... . ....+++.+++
T Consensus 384 -------------------------------------i~~~~q~~~~~~~~~~t~~~~~~~~~~--~--~~~~~~~~~~l 422 (530)
T PRK15064 384 -------------------------------------IGYYAQDHAYDFENDLTLFDWMSQWRQ--E--GDDEQAVRGTL 422 (530)
T ss_pred -------------------------------------EEEEcccccccCCCCCcHHHHHHHhcc--C--CccHHHHHHHH
Confidence 777777653 24444678888764221 1 11234567788
Q ss_pred HHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hc
Q 021147 229 TTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HA 303 (317)
Q Consensus 229 ~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~ 303 (317)
+.+++. ... +..+ .+|||||+||+++|||++.+|+++||||||+ ||+.+...+.+.|+++.. ..
T Consensus 423 ~~~~l~~~~~---~~~~--------~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 491 (530)
T PRK15064 423 GRLLFSQDDI---KKSV--------KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFV 491 (530)
T ss_pred HHcCCChhHh---cCcc--------cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 888873 221 3334 7999999999999999999999999999999 999999999999988521 25
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+...+...+|||
T Consensus 492 sHd~~~~~~~~d~i 505 (530)
T PRK15064 492 SHDREFVSSLATRI 505 (530)
T ss_pred eCCHHHHHHhCCEE
Confidence 67777777777764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=266.28 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=145.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.| . .+ |+++||+|++||++||+||||||||||+|+|+|+.+ |++|+|.++|++
T Consensus 249 ~~i~~~~l~~~~--~-~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 311 (491)
T PRK10982 249 VILEVRNLTSLR--Q-PS-----IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKK---- 311 (491)
T ss_pred cEEEEeCccccc--C-cc-----cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEE----
Confidence 579999999975 2 23 999999999999999999999999999999999999 999999999976
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc---cccchhhHHHHH-----Hhhhc-cCC-CChH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR---KVNFVIFVVDGL-----AVLKS-MEG-DSDV 219 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~---~~~~~~tv~eni-----~~~~~-~~~-~~~~ 219 (317)
+...+.... +.+.++|++|++. ++. .+++.+|. .+... +.. ....
T Consensus 312 ------------------i~~~~~~~~------~~~~i~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
T PRK10982 312 ------------------INNHNANEA------INHGFALVTEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSR 366 (491)
T ss_pred ------------------CCCCCHHHH------HHCCCEEcCCchhhCCccc-CCcHHHheehhhhhhhcccccccCcHH
Confidence 333332211 1123999999853 233 45666653 22111 110 1122
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+.+.++++.+++... .. +.+. .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.+++
T Consensus 367 ~~~~~~~~l~~~~l~~~-~~-~~~~--------~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 367 MKSDTQWVIDSMRVKTP-GH-RTQI--------GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHHHHHHHHHhcCccCC-Cc-cccc--------ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 23445667777776211 11 3344 7999999999999999999999999999999 999999999999988
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|+...+..++|||
T Consensus 437 l~~~~~tvi~vsHd~~~~~~~~d~v 461 (491)
T PRK10982 437 LAKKDKGIIIISSEMPELLGITDRI 461 (491)
T ss_pred HHHCCCEEEEECCChHHHHhhCCEE
Confidence 7643 667778788888874
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=270.70 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=150.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..++|
T Consensus 1 ml~i~~ls~~~~~~-~i-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFGAK-PL-----FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPN-ERLGK 68 (530)
T ss_pred CEEEEEEEEEeCCc-Ee-----EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEEEE
Confidence 58999999999754 34 999999999999999999999999999999999999 99999999985 35899
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
++|++.+++..++.++...... ...... .....+...+.. .....+++.+...+...... .....++.++++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 141 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHT--ELWEVK-QERDRIYALPEM--SEEDGMKVADLEVKFAEMDG--YTAEARAGELLLG 141 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhH--HHHHHH-HHHHHHhccccc--ccchHHHHHHHHHHHHhcCc--hhHHHHHHHHHHh
Confidence 9998777766555443211110 000000 000001100100 01112344444433222111 1223456788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcCCC
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHADRN 306 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~~~ 306 (317)
++++... ....+ .+|||||+||+++||||+.+|+++||||||+ ||+.++..+.+.|.+.- -...|+
T Consensus 142 ~gl~~~~--~~~~~--------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd 211 (530)
T PRK15064 142 VGIPEEQ--HYGLM--------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHD 211 (530)
T ss_pred CCCChhH--hcCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 8874211 12334 6999999999999999999999999999999 99999999999987521 136777
Q ss_pred cchhhcccCCC
Q 021147 307 LSCKSCARNKV 317 (317)
Q Consensus 307 ~~~~~~~~~~~ 317 (317)
...+..++|+|
T Consensus 212 ~~~~~~~~d~i 222 (530)
T PRK15064 212 RHFLNSVCTHM 222 (530)
T ss_pred HHHHHhhcceE
Confidence 77777777764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=270.94 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=144.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ +.
T Consensus 320 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK-LL-----IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCe-ee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 4589999999999754 34 999999999999999999999999999999999999 9999999743 21
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
. |||++|++..+...+|+.+|+.+........ ....+..+++
T Consensus 386 ------------------------------~-------i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~l 427 (552)
T TIGR03719 386 ------------------------------K-------LAYVDQSRDALDPNKTVWEEISGGLDIIQLG-KREVPSRAYV 427 (552)
T ss_pred ------------------------------E-------EEEEeCCccccCCCCcHHHHHHhhccccccC-cchHHHHHHH
Confidence 1 8888887543444578999987653211111 1112344677
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~ 304 (317)
+.+++.... . ...+ .+|||||+||+++|||++.+|+++||||||+ ||+.+...+.+.|+++. -...
T Consensus 428 ~~~~l~~~~-~-~~~~--------~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivs 497 (552)
T TIGR03719 428 GRFNFKGSD-Q-QKKV--------GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVIS 497 (552)
T ss_pred HhCCCChhH-h-cCch--------hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 888863110 1 2333 6999999999999999999999999999999 99999999999999862 1356
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+...+...+|||
T Consensus 498 Hd~~~~~~~~d~i 510 (552)
T TIGR03719 498 HDRWFLDRIATHI 510 (552)
T ss_pred CCHHHHHHhCCEE
Confidence 6777777777764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=269.84 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=138.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++...+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++
T Consensus 3 ~~i~~~nls~~~~~~~~i-----l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~-~~i~ 71 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG-IKVG 71 (552)
T ss_pred EEEEEeeEEEecCCCCee-----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEEE
Confidence 479999999999733334 999999999999999999999999999999999999 99999998763 3567
Q ss_pred eEecccCCCCcccccceeeccCChHHHHH---HHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRN---RMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~ 225 (317)
|++|++.++++.++.++..... ...+. .........+....+.. +.....-+.+.+.. .. ......++.
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~ 144 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGV--AEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDA---AD--AWDLDRKLE 144 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhh--HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh---cC--cchhHHHHH
Confidence 7777666555444433211000 00000 00000000000000000 00000000000000 00 001123455
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE--- 301 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~--- 301 (317)
++++.++++. . +.++ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++..
T Consensus 145 ~~l~~~~l~~-~---~~~~--------~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvI 212 (552)
T TIGR03719 145 IAMDALRCPP-W---DADV--------TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVV 212 (552)
T ss_pred HHHhhCCCCc-c---cCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEE
Confidence 6666666531 1 3344 7999999999999999999999999999999 999999999999987521
Q ss_pred hcCCCcchhhcccCCC
Q 021147 302 HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~~~~~~~~~~~~~~~~ 317 (317)
...|+...+..++|+|
T Consensus 213 iisHd~~~~~~~~d~v 228 (552)
T TIGR03719 213 AVTHDRYFLDNVAGWI 228 (552)
T ss_pred EEeCCHHHHHhhcCeE
Confidence 2566667777777764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=270.32 Aligned_cols=187 Identities=15% Similarity=0.132 Sum_probs=144.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++. .+ |+||||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~~-~~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~--- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGDR-LL-----IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-T--- 386 (556)
T ss_pred CeEEEEEeEEEEECCe-ee-----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-c---
Confidence 3589999999999754 34 999999999999999999999999999999999999 9999999743 2
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
. . |||+||++..+...+|+.+|+.+......... .......++
T Consensus 387 -------------------~----------~-------i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~l 429 (556)
T PRK11819 387 -------------------V----------K-------LAYVDQSRDALDPNKTVWEEISGGLDIIKVGN-REIPSRAYV 429 (556)
T ss_pred -------------------e----------E-------EEEEeCchhhcCCCCCHHHHHHhhcccccccc-cHHHHHHHH
Confidence 1 1 88888875334445789999886532111111 112244678
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~ 304 (317)
+.+++.... . +..+ .+|||||+||+++|||++.+|+++||||||+ ||+.+...+.+.|+++. -...
T Consensus 430 ~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vt 499 (556)
T PRK11819 430 GRFNFKGGD-Q-QKKV--------GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVIS 499 (556)
T ss_pred HhCCCChhH-h-cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 888863111 1 3334 7999999999999999999999999999999 99999999999998862 1256
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|++..+..++|||
T Consensus 500 Hd~~~~~~~~d~i 512 (556)
T PRK11819 500 HDRWFLDRIATHI 512 (556)
T ss_pred CCHHHHHHhCCEE
Confidence 6777777777764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=240.12 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=131.8
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++ +. ..+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~----------------------~~-----~~~ 48 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGAS----------------------PG-----KGW 48 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcc----------------------ch-----Hhh
Confidence 5789999999999999999999999999999 999999999975 21 122
Q ss_pred HHHHHhhhhccccccccccc-cchhhHHHHHHhhhcc-----CCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 178 NRMRCKAHKIGCEPSVIRKV-NFVIFVVDGLAVLKSM-----EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~-~~~~tv~eni~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
+ .++|++|++.++ ....|+.+|+.+.... ........+++.++++.+++.... +..+
T Consensus 49 ~-------~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~------- 111 (223)
T TIGR03771 49 R-------HIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELA---DRPV------- 111 (223)
T ss_pred C-------cEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhh---cCCh-------
Confidence 2 399999988653 2347899999764211 011122345577888888874221 2233
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+||+||+||+++|||++.+|+++||||||+ ||+.++..+.+.++++.+. ..|++..+...+|++
T Consensus 112 -~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i 183 (223)
T TIGR03771 112 -GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV 183 (223)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 6899999999999999999999999999999 9999999999999988643 456666666667764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=243.76 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=134.4
Q ss_pred ceEEEeEEEEcCCCC--------------ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC
Q 021147 71 LTDAKNKILSYTPGA--------------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (317)
Q Consensus 71 ~I~~~nls~~y~~~~--------------~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~ 136 (317)
.|+++||++.|.... ....+.+|+++||+|++|++++|+||||||||||+++|+|+++ |++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~ 78 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTV 78 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCc
Confidence 488999998884321 0011235999999999999999999999999999999999999 999
Q ss_pred cEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C
Q 021147 137 AQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G 215 (317)
Q Consensus 137 G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~ 215 (317)
|+|.++|.. ++++| .+. +...+|+.+|+.+..... .
T Consensus 79 G~I~~~g~~---~~~~~---------------------------------------~~~-~~~~~tv~enl~~~~~~~~~ 115 (264)
T PRK13546 79 GKVDRNGEV---SVIAI---------------------------------------SAG-LSGQLTGIENIEFKMLCMGF 115 (264)
T ss_pred eEEEECCEE---eEEec---------------------------------------ccC-CCCCCcHHHHHHHHHHHcCC
Confidence 999998852 12222 111 112347788886543211 1
Q ss_pred CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH
Q 021147 216 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD 294 (317)
Q Consensus 216 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~ 294 (317)
......+.+..+++.+++.... .... ..||+||+||+++|||++.+|+++|||||++ ||+.+...+.+
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~ 184 (264)
T PRK13546 116 KRKEIKAMTPKIIEFSELGEFI---YQPV--------KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD 184 (264)
T ss_pred CHHHHHHHHHHHHHHcCCchhh---cCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH
Confidence 1122223345566666663221 2233 6899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh------cCCCcchhhcccCCC
Q 021147 295 MLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 295 ~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.++.+. ..|++..+...+|+|
T Consensus 185 ~L~~~~~~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHcCEE
Confidence 99987532 445566666666653
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=261.12 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=141.0
Q ss_pred CCceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.++++++||++.|+++. .+ |+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~I-----L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~ 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYA-----LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAA 88 (549)
T ss_pred cceeEEEEEEEecCCCccceE-----EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEee
Confidence 35799999999997642 23 999999999999999999999999999999999999 9999999998641
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQ 225 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~ 225 (317)
. +++. +. +...+|+++|+.+...... ......+++.
T Consensus 89 ~---------------------------------------i~~~---~~-l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~ 125 (549)
T PRK13545 89 L---------------------------------------IAIS---SG-LNGQLTGIENIELKGLMMGLTKEKIKEIIP 125 (549)
T ss_pred e---------------------------------------EEec---cc-cCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence 0 1110 00 1123588999876432211 1222334456
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... .... ..|||||+||+++|||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 elLe~lgL~~~l---d~~~--------~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~ 194 (549)
T PRK13545 126 EIIEFADIGKFI---YQPV--------KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK 194 (549)
T ss_pred HHHHHcCChhHh---hCCc--------ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 778888874221 2333 6899999999999999999999999999999 9999999999999987532
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+...||++
T Consensus 195 TIIIVSHdl~~i~~l~DrI 213 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTKA 213 (549)
T ss_pred EEEEEECCHHHHHHhCCEE
Confidence 466777777777764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=269.30 Aligned_cols=179 Identities=17% Similarity=0.253 Sum_probs=144.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++|+++.|++. . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..
T Consensus 338 ~~~l~~~~ls~~~~~~--~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~~- 401 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF--S-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---LK- 401 (590)
T ss_pred ceEEEEcceEEEECCE--E-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---ee-
Confidence 3579999999999642 3 999999999999999999999999999999999999 999999853 11
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
++|+||++.+ ...+||.+|+.+...... ....+.+++
T Consensus 402 --------------------------------------i~y~~Q~~~~-~~~~tv~e~l~~~~~~~~----~~~~~~~~L 438 (590)
T PRK13409 402 --------------------------------------ISYKPQYIKP-DYDGTVEDLLRSITDDLG----SSYYKSEII 438 (590)
T ss_pred --------------------------------------EEEecccccC-CCCCcHHHHHHHHhhhcC----hHHHHHHHH
Confidence 7777777653 345789999876421111 112356788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.++
T Consensus 439 ~~l~l~~~~---~~~~--------~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 439 KPLQLERLL---DKNV--------KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHCCCHHHH---hCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 888874221 3344 7999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 508 iivsHD~~~~~~~aDrv 524 (590)
T PRK13409 508 LVVDHDIYMIDYISDRL 524 (590)
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 567777787788874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=273.15 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=137.4
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc--CcEEEECcccCceeeE
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTYF 151 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~--~G~I~i~g~~~~~~~~ 151 (317)
++|+++.|+++. + |+|+|+++++||++||+||||||||||+++|+|+.+ |+ +|+|.+||++
T Consensus 71 ~~~l~~~~~~~~-i-----L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~------ 133 (659)
T PLN03211 71 ISDETRQIQERT-I-----LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRK------ 133 (659)
T ss_pred cccccccCCCCe-e-----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEE------
Confidence 456677775433 3 999999999999999999999999999999999998 64 8999999976
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCC-C-hHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGD-S-DVEKQYNQIV 227 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~-~-~~~~~~~~~~ 227 (317)
+. . ..++ ++||++|+..+++ .+||+||+.+.... +.. . +...+++.++
T Consensus 134 ----------------~~---~-~~~~-------~i~yv~Q~~~l~~-~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~ 185 (659)
T PLN03211 134 ----------------PT---K-QILK-------RTGFVTQDDILYP-HLTVRETLVFCSLLRLPKSLTKQEKILVAESV 185 (659)
T ss_pred ----------------Cc---h-hhcc-------ceEEECcccccCC-cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 21 1 1222 3999999987554 57999999875422 211 1 2233456778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.+++.. ..++.++... ...||||||||++|||+|+.+|++++|||||+ ||+.++..+.+.|+++.+
T Consensus 186 l~~lgL~~-----~~~t~vg~~~-~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~ 254 (659)
T PLN03211 186 ISELGLTK-----CENTIIGNSF-IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254 (659)
T ss_pred HHHcCChh-----hcCceeCCCC-CCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence 88888632 2233343321 16899999999999999999999999999999 999999999999999865
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=243.90 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=136.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE-----------ECc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 143 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~-----------i~g 143 (317)
.||+|+|+.+..+ |+|+|+ +.+|++++|+||||||||||+|+|+|+++ |++|+|+ ++|
T Consensus 4 ~~~~~~y~~~~~~-----l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNSFK-----LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcchh-----hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 3789999755434 999995 99999999999999999999999999999 9999997 333
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 223 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~ 223 (317)
++ +........+. ...+++++|....++ .++.+++..... .......
T Consensus 73 ~~----------------------~~~~~~~~~~~-----~~~i~~~~~~~~~~~--~~~~~~i~~~l~----~~~~~~~ 119 (255)
T cd03236 73 SE----------------------LQNYFTKLLEG-----DVKVIVKPQYVDLIP--KAVKGKVGELLK----KKDERGK 119 (255)
T ss_pred ch----------------------hhhhhHHhhhc-----ccceeeecchhccCc--hHHHHHHHHHhc----hhHHHHH
Confidence 32 21111111111 112678888765554 256666654211 1223355
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++.... +... ..||+||+||+++||+++.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 120 ~~~~l~~~gl~~~~---~~~~--------~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~ 188 (255)
T cd03236 120 LDELVDQLELRHVL---DRNI--------DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188 (255)
T ss_pred HHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 77888888874211 2222 6899999999999999999999999999999 9999999999999988643
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|+|
T Consensus 189 ~~tIIiiSHd~~~~~~~ad~i 209 (255)
T cd03236 189 DNYVLVVEHDLAVLDYLSDYI 209 (255)
T ss_pred CCEEEEEECCHHHHHHhCCEE
Confidence 446666666667764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=270.42 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=143.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||++.|++. .+ |+++||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+ |....
T Consensus 318 ~~l~~~~l~~~~~~~-~i-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~~-- 383 (635)
T PRK11147 318 IVFEMENVNYQIDGK-QL-----VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKLE-- 383 (635)
T ss_pred ceEEEeeeEEEECCe-EE-----EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCcE--
Confidence 479999999999754 34 999999999999999999999999999999999999 99999998 43311
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
|||++|++..+...+||.+|+.+...... ......++..++.
T Consensus 384 -------------------------------------i~y~~q~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~ 425 (635)
T PRK11147 384 -------------------------------------VAYFDQHRAELDPEKTVMDNLAEGKQEVM-VNGRPRHVLGYLQ 425 (635)
T ss_pred -------------------------------------EEEEeCcccccCCCCCHHHHHHhhccccc-ccchHHHHHHHHH
Confidence 77777765434456788999876432111 0111334566777
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcCC
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHADR 305 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~~ 305 (317)
.+++.... ...++ ..||||||||+++||+++.+|+++||||||+ ||+.+...+.++++++. -...|
T Consensus 426 ~~~l~~~~--~~~~~--------~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSH 495 (635)
T PRK11147 426 DFLFHPKR--AMTPV--------KALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSH 495 (635)
T ss_pred hcCCCHHH--HhChh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEEC
Confidence 77763111 13344 7999999999999999999999999999999 99999999999998851 12566
Q ss_pred CcchhhcccCCC
Q 021147 306 NLSCKSCARNKV 317 (317)
Q Consensus 306 ~~~~~~~~~~~~ 317 (317)
+...+..++|++
T Consensus 496 d~~~~~~~~d~i 507 (635)
T PRK11147 496 DRQFVDNTVTEC 507 (635)
T ss_pred CHHHHHHhcCEE
Confidence 777777777764
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=234.62 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|+++. + |+|||++|++||..+|+||||||||||+++++|.++ |++|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r~gk~-i-----L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G- 96 (257)
T COG1119 29 EPLIELKNVSVRRNGKK-I-----LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFG- 96 (257)
T ss_pred cceEEecceEEEECCEe-e-----ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeecc-
Confidence 45799999999998764 4 999999999999999999999999999999999999 99999999998622
Q ss_pred eeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhh--h---ccC-CCChHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVL--K---SME-GDSDVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~--~---~~~-~~~~~~ 220 (317)
..+. .++|++ ||+|+.... .|....+++|-+.-+ . .|. ......
T Consensus 97 ---------------------~~~~~~elrk~-------IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~ 148 (257)
T COG1119 97 ---------------------KGETIFELRKR-------IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148 (257)
T ss_pred ---------------------CCcchHHHHHH-------hCccCHHHHhhcccccccceeeeecccccccccccCCCHHH
Confidence 2222 677877 999976433 344444566655311 1 122 333456
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..++..+++.+++.... +.+. ..||-||+||+-||||++.+|.++|||||++ ||...+..+.+.+.++
T Consensus 149 ~~~a~~lle~~g~~~la---~r~~--------~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 149 LAAAQWLLELLGAKHLA---DRPF--------GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HHHHHHHHHHcchhhhc---cCch--------hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 67778889999874332 4555 7999999999999999999999999999999 9999999999999987
Q ss_pred HH
Q 021147 300 LE 301 (317)
Q Consensus 300 ~~ 301 (317)
..
T Consensus 218 ~~ 219 (257)
T COG1119 218 AA 219 (257)
T ss_pred hc
Confidence 53
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=224.09 Aligned_cols=189 Identities=16% Similarity=0.150 Sum_probs=140.4
Q ss_pred CCceEEEeEEEEcCCCCcc---ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPGAWI---ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~---~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++.++++|++++|...... ..+.|++.|||++.+|+++||||.||||||||+|+|+|+++ |++|+|++||+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n~~~ 76 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILINDHP 76 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEECCcc
Confidence 4678999999988533111 12345999999999999999999999999999999999999 999999999986
Q ss_pred CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCC--CChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEG--DSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~--~~~~~~~ 222 (317)
+.-.+-....++ |-++||+|. -|++.+.+-+-+........ +.+...+
T Consensus 77 ----------------------L~~~Dy~~R~k~-------IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~ 127 (267)
T COG4167 77 ----------------------LHFGDYSFRSKR-------IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRK 127 (267)
T ss_pred ----------------------ccccchHhhhhh-------eeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHH
Confidence 211222222222 777777775 34444433333332222222 2234567
Q ss_pred HHHHHHHHcCC-CcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNC-PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l-~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.+.++.+|+ |... ++.. ..||-|||||+++||||..+|+++|.||+-. ||...+..+.+++.++-
T Consensus 128 ~i~~TL~~VGL~Pdha---n~~~--------~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 128 QIFETLRMVGLLPDHA---NYYP--------HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred HHHHHHHHhccCcccc---ccch--------hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 78888999998 3222 3444 6899999999999999999999999999999 99999999999988875
Q ss_pred Hh
Q 021147 301 EH 302 (317)
Q Consensus 301 ~~ 302 (317)
+.
T Consensus 197 ek 198 (267)
T COG4167 197 EK 198 (267)
T ss_pred HH
Confidence 44
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=219.96 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=114.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++|+++.|++. .+ ++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+.
T Consensus 1 l~~~~l~~~~~~~-~~-----l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGK-LL-----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCc-eE-----EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 5789999999754 34 999999999999999999999999999999999999 999999987731
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
.++|++|
T Consensus 64 ----------------------------------~i~~~~~--------------------------------------- 70 (144)
T cd03221 64 ----------------------------------KIGYFEQ--------------------------------------- 70 (144)
T ss_pred ----------------------------------EEEEEcc---------------------------------------
Confidence 1777665
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcCCCc
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HADRNL 307 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~~~~ 307 (317)
||+||+||+++|||++.+|+++|||||++ ||+.++..+.+.++++.. ...|++
T Consensus 71 -----------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~ 127 (144)
T cd03221 71 -----------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDR 127 (144)
T ss_pred -----------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 89999999999999999999999999999 999999999999988622 245566
Q ss_pred chhhcccCCC
Q 021147 308 SCKSCARNKV 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
..+.+.+|++
T Consensus 128 ~~~~~~~d~v 137 (144)
T cd03221 128 YFLDQVATKI 137 (144)
T ss_pred HHHHHhCCEE
Confidence 6666666653
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-30 Score=242.17 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=162.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+++.|+++|++..|..... .+.++++|||+|++||++||||+||||||-.++.|+||++......-+|+|.++|.+
T Consensus 3 ~~~lL~v~nLsV~f~~~~~--~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d-- 78 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGG--TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED-- 78 (534)
T ss_pred CCcceeeeccEEEEecCCc--ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh--
Confidence 3578999999999953221 123499999999999999999999999999999999999855444568999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhcc--CCCChHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSM--EGDSDVEKQYN 224 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~--~~~~~~~~~~~ 224 (317)
+-..+.+.++.- .=.+|+++||+|- -+++-.|+...+.-.-.. .-......+++
T Consensus 79 --------------------ll~~se~~lr~i---RG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~ 135 (534)
T COG4172 79 --------------------LLAASERQLRGV---RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA 135 (534)
T ss_pred --------------------hhcCCHHHHhhh---cccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333443333321 0123888888874 344445665555422211 12234556778
Q ss_pred HHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 225 QIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 225 ~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.++++.+|++. ...-+.|+ .+||||||||+.||.||+.+|++||.||||. ||...+..|.++|+++.+.
T Consensus 136 lelL~~VgI~~p~~rl~~yP---------HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~ 206 (534)
T COG4172 136 LELLELVGIPEPEKRLDAYP---------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE 206 (534)
T ss_pred HHHHHHcCCCchhhhhhhCC---------cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH
Confidence 88999999962 22334688 5999999999999999999999999999999 9999999999999998654
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
-.|++..+...+|||
T Consensus 207 ~gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 207 LGMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hCcEEEEEeccHHHHHHhhhhE
Confidence 467888999999886
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-30 Score=263.71 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=136.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||++.|++. .+ |+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..
T Consensus 310 ~~~l~~~~l~~~y~~~-~i-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~~- 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR-II-----LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-IK- 376 (638)
T ss_pred CceEEEEeeEEEeCCe-ee-----eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-EE-
Confidence 3479999999999754 34 999999999999999999999999999999999999 99999998642 23
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+||++|+.. .+....++.+++.... . .....++..+
T Consensus 377 --------------------------------------igy~~Q~~~~~l~~~~~~~~~~~~~~---~--~~~~~~~~~~ 413 (638)
T PRK10636 377 --------------------------------------LGYFAQHQLEFLRADESPLQHLARLA---P--QELEQKLRDY 413 (638)
T ss_pred --------------------------------------EEEecCcchhhCCccchHHHHHHHhC---c--hhhHHHHHHH
Confidence 444444321 1112234444442110 1 1123456778
Q ss_pred HHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---h
Q 021147 228 ATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---H 302 (317)
Q Consensus 228 a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~ 302 (317)
+..+++.. .. ..++ ..||||||||++|||+++.+|+++||||||+ ||+.+...+.++|.++.. .
T Consensus 414 L~~~~l~~~~~---~~~~--------~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~ 482 (638)
T PRK10636 414 LGGFGFQGDKV---TEET--------RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVV 482 (638)
T ss_pred HHHcCCChhHh---cCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 88888631 11 3344 7999999999999999999999999999999 999999999999988621 2
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 483 vSHd~~~~~~~~d~i 497 (638)
T PRK10636 483 VSHDRHLLRSTTDDL 497 (638)
T ss_pred EeCCHHHHHHhCCEE
Confidence 566777777777764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-30 Score=237.99 Aligned_cols=164 Identities=20% Similarity=0.207 Sum_probs=133.4
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCCh
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDS 173 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~ 173 (317)
=+++|+++.--++||-|+||||||||+|+|+|+.. |+.|.|.+||.-. +-+. ++...
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L----~Ds~--------------k~i~l 71 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVL----VDAE--------------KGIFL 71 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEe----eccc--------------CCccc
Confidence 36899999978999999999999999999999999 9999999999741 0000 11111
Q ss_pred HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchh
Q 021147 174 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL 253 (317)
Q Consensus 174 ~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~ 253 (317)
..-+++ |||||||..+|+ .+||+.|+.|+.... ...+..++...+|+.. +-+.|+ .
T Consensus 72 p~~~Rr-------iGYVFQDARLFp-H~tVrgNL~YG~~~~-----~~~~fd~iv~lLGI~h--LL~R~P---------~ 127 (352)
T COG4148 72 PPEKRR-------IGYVFQDARLFP-HYTVRGNLRYGMWKS-----MRAQFDQLVALLGIEH--LLDRYP---------G 127 (352)
T ss_pred Chhhhe-------eeeEeecccccc-ceEEecchhhhhccc-----chHhHHHHHHHhCcHH--HHhhCC---------C
Confidence 122333 999999998886 799999999986543 2344788889999832 223677 5
Q ss_pred cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcC
Q 021147 254 SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHAD 304 (317)
Q Consensus 254 ~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~ 304 (317)
+||||||||++|||||...|.++++|||.+ ||...+++++..++++.+..+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~ 179 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 999999999999999977643
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-30 Score=214.44 Aligned_cols=136 Identities=21% Similarity=0.281 Sum_probs=109.4
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+||||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+ +...+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~----------------------~~~~~ 53 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKD----------------------ISDID 53 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEE----------------------GTTSH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----cccccccccccc----------------------ccccc
Confidence 689999999999999999999999999999999999 999999999986 44444
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCc-ccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY-LSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~ 251 (317)
....++. ++|++|+..++. ..|+.+| ....++.++++.+++.. ....-+...
T Consensus 54 ~~~~~~~-------i~~~~~~~~~~~-~~tv~~~------------~~~~~~~~~l~~l~~~~~~~~~~~~~~------- 106 (137)
T PF00005_consen 54 IEELRRR-------IGYVPQDPQLFP-GLTVREN------------ESDERIEEVLKKLGLEDLLDRKIGQRA------- 106 (137)
T ss_dssp HHHHHHT-------EEEEESSHCHHT-TSBHHHH------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-------
T ss_pred ccccccc-------cccccccccccc-ccccccc------------ccccccccccccccccccccccccccc-------
Confidence 4455555 999999976555 4668887 23345777888877632 111112222
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 283 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts 283 (317)
..||+||+||+++|||++.+|+++||||||+
T Consensus 107 -~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 -SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 7999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-30 Score=261.82 Aligned_cols=199 Identities=12% Similarity=0.093 Sum_probs=140.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++.. + |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.. .++|
T Consensus 1 ~i~i~nls~~~g~~~-~-----l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~-~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGVRV-L-----LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNW-QLAW 68 (638)
T ss_pred CEEEEEEEEEeCCce-e-----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-EEEE
Confidence 589999999997653 4 999999999999999999999999999999999999 999999999863 5788
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHH-------H-HHhh---hcc-CCCCh
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVD-------G-LAVL---KSM-EGDSD 218 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~e-------n-i~~~---~~~-~~~~~ 218 (317)
++|+...+.. + . +++++|....+. .++... + ..+. ... .....
T Consensus 69 ~~q~~~~~~~-~----------------~-------~~~v~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (638)
T PRK10636 69 VNQETPALPQ-P----------------A-------LEYVIDGDREYR-QLEAQLHDANERNDGHAIATIHGKLDAIDAW 123 (638)
T ss_pred EecCCCCCCC-C----------------H-------HHHHHHhhHHHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCc
Confidence 8885322110 0 0 223322211110 001000 0 0000 000 00011
Q ss_pred HHHHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
....++..+++.+++. ... ..++ .+|||||+||++|||||+.+|+++||||||+ ||+.+...+.+.|
T Consensus 124 ~~~~~~~~~L~~lgl~~~~~---~~~~--------~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L 192 (638)
T PRK10636 124 TIRSRAASLLHGLGFSNEQL---ERPV--------SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192 (638)
T ss_pred chHHHHHHHHHhCCCCchhh---cCch--------hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 2234577888888873 111 3444 7999999999999999999999999999999 9999999999998
Q ss_pred HHHHH---hcCCCcchhhcccCCC
Q 021147 297 RYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 297 ~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
+++.. ...|+..++..++|+|
T Consensus 193 ~~~~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 193 KSYQGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred HhCCCeEEEEeCCHHHHHHhcCEE
Confidence 87521 3567777777777764
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-30 Score=224.05 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=111.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~ 154 (317)
.||++.|++. .+ +++ +|+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 4 ~~l~~~~~~~-~~-----l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--------- 62 (177)
T cd03222 4 PDCVKRYGVF-FL-----LVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGIT--------- 62 (177)
T ss_pred CCeEEEECCE-EE-----Ecc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEE---------
Confidence 5899999764 33 777 49999999999999999999999999999999 999999988853
Q ss_pred cCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC
Q 021147 155 YTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP 234 (317)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~ 234 (317)
++|++|++.
T Consensus 63 --------------------------------i~~~~q~~~--------------------------------------- 71 (177)
T cd03222 63 --------------------------------PVYKPQYID--------------------------------------- 71 (177)
T ss_pred --------------------------------EEEEcccCC---------------------------------------
Confidence 666666320
Q ss_pred cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCC
Q 021147 235 YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRN 306 (317)
Q Consensus 235 ~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~ 306 (317)
||+||+||+++|||++.+|++++|||||+ ||+.++..+.+.++++.+. ..|+
T Consensus 72 --------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 72 --------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred --------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 89999999999999999999999999999 9999999999999987543 4455
Q ss_pred cchhhcccCCC
Q 021147 307 LSCKSCARNKV 317 (317)
Q Consensus 307 ~~~~~~~~~~~ 317 (317)
+..+...+|++
T Consensus 132 ~~~~~~~~d~i 142 (177)
T cd03222 132 LAVLDYLSDRI 142 (177)
T ss_pred HHHHHHhCCEE
Confidence 66666666653
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=220.37 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=157.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc-ccCce
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g-~~~~~ 148 (317)
..++++||+.+|++-+. |+++||+|.+||.-+|||||||||||++..|+|--+ |+.|+++++| .+
T Consensus 4 ~iL~~~~vsVsF~GF~A------ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~d--- 69 (249)
T COG4674 4 IILYLDGVSVSFGGFKA------LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTD--- 69 (249)
T ss_pred ceEEEeceEEEEcceee------eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchh---
Confidence 46899999999987543 999999999999999999999999999999999999 9999999999 44
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc---------CCCChH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM---------EGDSDV 219 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~---------~~~~~~ 219 (317)
+..++...+.+. .||--||.|..|. .+||+||+.+.... ......
T Consensus 70 -------------------l~~~~e~~IAr~------GIGRKFQ~PtVfe-~ltV~eNLelA~~~~k~v~a~L~~r~~~~ 123 (249)
T COG4674 70 -------------------LTKLPEHRIARA------GIGRKFQKPTVFE-NLTVRENLELALNRDKSVFASLFARLRAE 123 (249)
T ss_pred -------------------hccCCHHHHHHh------ccCccccCCeehh-hccHHHHHHHHhcCCcchHHHhhhhcChh
Confidence 556665444433 3888899998666 68999999875321 122344
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+.++.+++...++.... +.. |..||.||||++.||..++.+|+++++|||++ +-.......-++++.
T Consensus 124 e~~ride~La~igL~~~~---~~~--------A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 124 ERRRIDELLATIGLGDER---DRL--------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred HHHHHHHHHHHcccchhh---hhh--------hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence 556788889888873222 222 37899999999999999999999999999999 866666777888888
Q ss_pred HHHh-----cCCCcchhhcccCCC
Q 021147 299 CLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-----~~~~~~~~~~~~~~~ 317 (317)
+... -+|+..++..+++||
T Consensus 193 la~~hsilVVEHDM~Fvr~~A~~V 216 (249)
T COG4674 193 LAGKHSILVVEHDMGFVREIADKV 216 (249)
T ss_pred HhcCceEEEEeccHHHHHHhhhee
Confidence 7642 567788888887775
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=217.55 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=137.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++.+|++..-++... +.++||++.+||.+-|.||||||||||+|+|+|+.+ |++|+|+++|..
T Consensus 2 ~L~a~~L~~~R~e~~l------f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~----- 65 (209)
T COG4133 2 MLEAENLSCERGERTL------FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEP----- 65 (209)
T ss_pred cchhhhhhhccCccee------ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCC-----
Confidence 5778888877765533 999999999999999999999999999999999999 999999999875
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccc-ccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v-~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+. ..++..++. +-|+ .|.. +-..+|++||+.|....... .....+.+++.
T Consensus 66 -----------------i~-~~~~~~~~~-------l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~--~~~~~i~~Al~ 116 (209)
T COG4133 66 -----------------IQ-NVRESYHQA-------LLYLGHQPG--IKTELTALENLHFWQRFHGS--GNAATIWEALA 116 (209)
T ss_pred -----------------Cc-cchhhHHHH-------HHHhhcccc--ccchhhHHHHHHHHHHHhCC--CchhhHHHHHH
Confidence 21 122233444 3333 2322 33357999999998754332 23345889999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+++.-.. +.++ .+||-||++|+++||.+++.++++|||||++ ||..+...+...+...+
T Consensus 117 ~vgL~g~~---dlp~--------~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 117 QVGLAGLE---DLPV--------GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred HcCccccc---ccch--------hhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 99984222 4666 8999999999999999999999999999999 99999999988887643
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=271.65 Aligned_cols=208 Identities=17% Similarity=0.104 Sum_probs=173.6
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 30 LSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
++.|....-.....+.++..+.+|+.+++..+..... .....++++|.+|+....... ..|+||||+|+
T Consensus 469 Lr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~---~tL~dIn~~i~ 545 (1381)
T KOG0054|consen 469 LRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPE---PTLKDINFEIK 545 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCc---ccccceeEEec
Confidence 4455555556677788899999999999875432211 223469999999998652211 12999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+|+.+||||+-|||||+|+.+|.|-.+ ..+|+|.++|.
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~-----~~sG~v~v~gs------------------------------------- 583 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMP-----KLSGSVAVNGS------------------------------------- 583 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcc-----cccceEEEcCe-------------------------------------
Confidence 999999999999999999999999999 99999999885
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC--CcccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC--PYLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
++|+||.|.++++ ||+|||.|+.++. .++-.++++++++ +...+|.|-.|.|||+| .+|||||
T Consensus 584 -----iaYv~Q~pWI~ng--TvreNILFG~~~d------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG--inLSGGQ 648 (1381)
T KOG0054|consen 584 -----VAYVPQQPWIQNG--TVRENILFGSPYD------EERYDKVIKACALKKDLEILPFGDLTEIGERG--INLSGGQ 648 (1381)
T ss_pred -----EEEeccccHhhCC--cHHHhhhcCcccc------HHHHHHHHHHccCHhHHhhcCCCCcceecCCc--cCCcHhH
Confidence 8999999988876 9999999987643 3346778888888 35568889999999999 9999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
||||++|||++++.++.+||+|.| +|..+-+.+.+..-
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci 687 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI 687 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHH
Confidence 999999999999999999999999 99999998877543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=259.28 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=140.3
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++. .+ |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..+
T Consensus 1 m~~l~i~~ls~~~~~~-~i-----l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~-~~~ 68 (635)
T PRK11147 1 MSLISIHGAWLSFSDA-PL-----LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQD-LIV 68 (635)
T ss_pred CcEEEEeeEEEEeCCc-ee-----EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCC-CEE
Confidence 3479999999999754 34 999999999999999999999999999999999999 99999999874 346
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccc-cccccccccchhhHHHHHHhhh----ccC-CCChHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGC-EPSVIRKVNFVIFVVDGLAVLK----SME-GDSDVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~-v~Q~~~~~~~~~tv~eni~~~~----~~~-~~~~~~~~ 222 (317)
++++|.+.......+-+...... ..+.... ..+..+.. +.++ +..+|+.... ... ........
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~ 137 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGI--EEQAEYL-KRYHDISHLVETD--------PSEKNLNELAKLQEQLDHHNLWQLEN 137 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhh--HHHHHHH-HHHHHHHHHhccC--------chHHHHHHHHHHHHHHHhcCcccHHH
Confidence 77777532110000000000000 0000000 00000000 0000 1122332110 000 00112234
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++. ...++ .+|||||+||++|||||+.+|+++||||||+ ||+.+...+.+.|+++..
T Consensus 138 ~~~~~l~~lgl~-----~~~~~--------~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~ 204 (635)
T PRK11147 138 RINEVLAQLGLD-----PDAAL--------SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG 204 (635)
T ss_pred HHHHHHHhCCCC-----CCCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCC
Confidence 577888888863 13444 7999999999999999999999999999999 999999999999988631
Q ss_pred ---hcCCCcchhhcccCCC
Q 021147 302 ---HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ---~~~~~~~~~~~~~~~~ 317 (317)
...|+..++..++|+|
T Consensus 205 tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 205 SIIFISHDRSFIRNMATRI 223 (635)
T ss_pred EEEEEeCCHHHHHHhcCeE
Confidence 2567777777777764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=276.72 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=144.1
Q ss_pred ceEEEeEEEEcCC---CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~---~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+++++||++.|+. .+.+ |+|||++|++|+++||+||||||||||+++|+|+.++. .|++|+|++||++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i-----L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g--~~~~G~I~i~G~~-- 829 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI-----LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG--VITGGDRLVNGRP-- 829 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe-----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEE--
Confidence 5899999999952 2233 99999999999999999999999999999999998632 2678999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCCC--hHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGDS--DVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~~--~~~~~~ 223 (317)
+. ..+++. +||++|+..+ ...+||+||+.+.... +... ....++
T Consensus 830 --------------------~~----~~~~~~-------i~yv~Q~~~~-~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~ 877 (1394)
T TIGR00956 830 --------------------LD----SSFQRS-------IGYVQQQDLH-LPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877 (1394)
T ss_pred --------------------CC----hhhhcc-------eeeecccccC-CCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 21 124444 9999998754 3468999999875422 2211 223456
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc-eeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA-KQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~-ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+.++++.+++.. ..+..+++.+ ..||||||||++||++|+.+|+ +++|||||+ ||+.+...+.+.|+++.+
T Consensus 878 v~~~l~~l~L~~-----~~d~~v~~~~--~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~ 950 (1394)
T TIGR00956 878 VEEVIKLLEMES-----YADAVVGVPG--EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD 950 (1394)
T ss_pred HHHHHHHcCChh-----hCCCeeCCCC--CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 778889888632 2334445444 4799999999999999999997 999999999 999999999999999854
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=258.37 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=133.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+|+++++||+++|+||||||||||+++|+|..+++ ...+|+|.++|.+ + +
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--~~~~G~i~~~g~~----------------------~---~ 93 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG--VKGSGSVLLNGMP----------------------I---D 93 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEE----------------------C---C
Confidence 99999999999999999999999999999999998721 0138999999975 2 2
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CCC--ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EGD--SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~~--~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~ 248 (317)
...+++. +||++|++.++ ..+||+||+.+.... +.. .+...+++.++++.+++. +..++.+++
T Consensus 94 ~~~~~~~-------i~yv~Q~~~~~-~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~t~vg~ 160 (617)
T TIGR00955 94 AKEMRAI-------SAYVQQDDLFI-PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-----KCANTRIGV 160 (617)
T ss_pred HHHHhhh-------ceeeccccccC-ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-----hcCcCccCC
Confidence 2344544 99999998655 468999999986532 221 123345677788888863 233455554
Q ss_pred ccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 249 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 249 hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+....||||||||++|||+++.+|++++|||||+ ||+.+...+.+.++++.+
T Consensus 161 ~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~ 214 (617)
T TIGR00955 161 PGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214 (617)
T ss_pred CCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh
Confidence 22125799999999999999999999999999999 999999999999999864
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=215.70 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=135.8
Q ss_pred ceEEEeEEEEcCCCCc-cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~-~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|.++||+|+|.-+.. -+.+.+|+++||+++.||++++-||||||||||+|+|+|-|. |++|+|++....-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~~-- 76 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGEW-- 76 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcch--
Confidence 5899999999842211 012233999999999999999999999999999999999999 99999998654311
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh-hccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL-KSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~a 228 (317)
+++-...+++. +.-..+.||||+|.....+. .+-.|-.+-. .......+....+...++
T Consensus 77 ----------------vdl~~a~pr~v---l~vRr~TiGyVSQFLRviPR-V~aLdVvaePll~~gv~~~~a~~~a~~Ll 136 (235)
T COG4778 77 ----------------VDLVTAEPREV---LEVRRTTIGYVSQFLRVIPR-VSALDVVAEPLLARGVPREVARAKAADLL 136 (235)
T ss_pred ----------------hhhhccChHHH---HHHHHhhhHHHHHHHHhccC-cchHHHHHhHHHHcCCCHHHHHHHHHHHH
Confidence 11222222211 11112349999996543332 1111222110 111222344566777889
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..+++| .+.++. ..+|||++||+.|||.++.+-++|+|||||+ ||..+++.+.++|.+.+.
T Consensus 137 ~rLnlperLW~LaP------------aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka 200 (235)
T COG4778 137 TRLNLPERLWSLAP------------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA 200 (235)
T ss_pred HHcCCCHHHhcCCC------------cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh
Confidence 999997 333322 5899999999999999999999999999999 999999999999998653
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=211.06 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=139.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.++.++||+.+.+++-. |-++||+|.+||++.|+||||||||||+.-+.|.+.++- ..+|++++++++
T Consensus 1 ~~l~l~nvsl~l~g~cL------La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~---- 68 (213)
T COG4136 1 GMLCLKNVSLRLPGSCL------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQR---- 68 (213)
T ss_pred CceeeeeeeecCCCceE------EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCee----
Confidence 36889999999887654 999999999999999999999999999999999998432 348999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+..++. -+++ +|+++|++-+|+ .++|.+|+.|..+..-.-...++...++++
T Consensus 69 ------------------l~~lPa--~qRq-------~GiLFQD~lLFp-hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~ 120 (213)
T COG4136 69 ------------------LDMLPA--AQRQ-------IGILFQDALLFP-HLSVGQNLLFALPATLKGNARRNAANAALE 120 (213)
T ss_pred ------------------ccccch--hhhh-------eeeeeccccccc-ccccccceEEecCcccccHHHHhhHHHHHH
Confidence 333332 2334 999999997665 789999998764322211222334556677
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..++.-.- +..+ .+||||||-|+++-|+|+..|+.++||||+| ||..-+..+.+.+-.-.
T Consensus 121 ~~gL~g~f--~~dP---------~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~ 181 (213)
T COG4136 121 RSGLDGAF--HQDP---------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 (213)
T ss_pred Hhccchhh--hcCh---------hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH
Confidence 77763211 1222 6899999999999999999999999999999 99998888888765433
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=225.62 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=118.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE-ECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~-i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|. ++|.. +
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~----------------------~--- 52 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDA----------------------L--- 52 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCce----------------------e---
Confidence 999999999999999999999999999999999999 9999997 66643 1
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. ++ +.+. +...+|+.+|+.+.......... +....+.+.++++... +..+
T Consensus 53 ~--------------~~---~~~~-l~~~ltv~enl~~~~~~~~~~~~--~~~~~~~~~~~l~~~~---~~~~------- 102 (213)
T PRK15177 53 P--------------LG---ANSF-ILPGLTGEENARMMASLYGLDGD--EFSHFCYQLTQLEQCY---TDRV------- 102 (213)
T ss_pred c--------------cc---cccc-cCCcCcHHHHHHHHHHHcCCCHH--HHHHHHHHHhChhHHh---hchH-------
Confidence 0 22 1122 22356899999875432111111 1112233444442211 2333
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
..||+||+||+++|||++.+|+++|||||++ +|+.++..+.+.+.+..+. ..|+...+...+|+|
T Consensus 103 -~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i 173 (213)
T PRK15177 103 -SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAF 173 (213)
T ss_pred -hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCee
Confidence 6899999999999999999999999999999 9999999999987654322 455666666666654
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=213.87 Aligned_cols=142 Identities=24% Similarity=0.374 Sum_probs=116.8
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
+++|+++.|++. .+ ++++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+
T Consensus 1 ~~~~~~~~~~~~-~~-----l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~------- 62 (157)
T cd00267 1 EIENLSFRYGGR-TA-----LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKD------- 62 (157)
T ss_pred CeEEEEEEeCCe-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEE-------
Confidence 368999999754 34 999999999999999999999999999999999999 999999999975
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
+.......+++. ++|++|
T Consensus 63 ---------------~~~~~~~~~~~~-------i~~~~q---------------------------------------- 80 (157)
T cd00267 63 ---------------IAKLPLEELRRR-------IGYVPQ---------------------------------------- 80 (157)
T ss_pred ---------------cccCCHHHHHhc-------eEEEee----------------------------------------
Confidence 222222222232 666555
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
||+||+||+++||+++.+|+++|||||++ ||+.++..+.+.+.++.+. ..|
T Consensus 81 ----------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 81 ----------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 89999999999999999999999999999 9999999999999987653 345
Q ss_pred CcchhhcccCC
Q 021147 306 NLSCKSCARNK 316 (317)
Q Consensus 306 ~~~~~~~~~~~ 316 (317)
+...+...+|+
T Consensus 139 ~~~~~~~~~d~ 149 (157)
T cd00267 139 DPELAELAADR 149 (157)
T ss_pred CHHHHHHhCCE
Confidence 55555555554
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=278.85 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=121.7
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~---------------------------- 721 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER---------------------------- 721 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC----------------------------
Confidence 3999999999999999999999999999999999999 9999998432
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEec
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTH 249 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~h 249 (317)
+ |||++|++.+++ .|++||+.++..+ ..++..++++.+++. ...+++|..+.++++
T Consensus 722 -------~-------i~yv~Q~~~l~~--~Tv~enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~ 779 (1560)
T PTZ00243 722 -------S-------IAYVPQQAWIMN--ATVRGNILFFDEE------DAARLADAVRVSQLEADLAQLGGGLETEIGEK 779 (1560)
T ss_pred -------e-------EEEEeCCCccCC--CcHHHHHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchHHhcCC
Confidence 1 999999998765 5999999975421 122344455554442 334566788888888
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
| .+||||||||++||||++.+|+++|||||++ ||+.+...+.+.
T Consensus 780 g--~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 780 G--VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred C--CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 7 8999999999999999999999999999999 999998888764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=259.37 Aligned_cols=181 Identities=14% Similarity=0.206 Sum_probs=134.0
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||++.|++...+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..++
T Consensus 507 ~~L~~~~ls~~y~~~~~i-----l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~-~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPGGPLL-----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAK-VRMA 575 (718)
T ss_pred ceEEEEeeEEEeCCCCee-----EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCc-eeEE
Confidence 589999999999654434 999999999999999999999999999999999999 99999998764 2355
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH--hhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA--VLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~--~~~~~~~~~~~~~~~~~~~ 227 (317)
|++|++.. .+++.+|.. +...++.. ..+++..+
T Consensus 576 yv~Q~~~~------------------------------------------~l~~~~~~~~~~~~~~~~~---~~~~i~~~ 610 (718)
T PLN03073 576 VFSQHHVD------------------------------------------GLDLSSNPLLYMMRCFPGV---PEQKLRAH 610 (718)
T ss_pred EEeccccc------------------------------------------cCCcchhHHHHHHHhcCCC---CHHHHHHH
Confidence 55554210 011222211 11111111 12446778
Q ss_pred HHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---Hh
Q 021147 228 ATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EH 302 (317)
Q Consensus 228 a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~ 302 (317)
+..+++.. .. ..+. ..||||||||++|||+++.+|+++||||||+ ||+.+...+.+.+.++. -.
T Consensus 611 L~~~gl~~~~~---~~~~--------~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIi 679 (718)
T PLN03073 611 LGSFGVTGNLA---LQPM--------YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLM 679 (718)
T ss_pred HHHCCCChHHh---cCCc--------cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 88888741 11 2333 6999999999999999999999999999999 99999999988887641 12
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 680 vSHd~~~i~~~~drv 694 (718)
T PLN03073 680 VSHDEHLISGSVDEL 694 (718)
T ss_pred EECCHHHHHHhCCEE
Confidence 567777777777764
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=226.28 Aligned_cols=201 Identities=18% Similarity=0.217 Sum_probs=147.7
Q ss_pred CceEEEeEEEEcCCCC-----------cc----ccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC
Q 021147 70 SLTDAKNKILSYTPGA-----------WI----ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 134 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~-----------~~----~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p 134 (317)
.+|.++||++.|.-.. .. ....|++||||+|++|++++++|+|||||||++|+|+|++. |
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p 76 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-----P 76 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-----c
Confidence 5678888888874110 00 12246999999999999999999999999999999999999 9
Q ss_pred cCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccc-cccccccchhhHHHHHHhhh-c
Q 021147 135 ERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIFVVDGLAVLK-S 212 (317)
Q Consensus 135 ~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~-Q~~~~~~~~~tv~eni~~~~-~ 212 (317)
++|.|.++|.+. . .+.+++- +.+++|+ |-.++.. .+.+.+.+.+.. -
T Consensus 77 ~~G~v~V~G~~P---------------------f--~~~~~~~-------~~~~~v~gqk~ql~W-dlp~~ds~~v~~~I 125 (325)
T COG4586 77 TSGKVRVNGKDP---------------------F--RRREEYL-------RSIGLVMGQKLQLWW-DLPALDSLEVLKLI 125 (325)
T ss_pred CCCeEEecCcCc---------------------c--hhHHHHH-------HHHHHHhhhhheeee-echhhhhHHHHHHH
Confidence 999999999751 1 1222222 3377764 3333222 122333333322 2
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHH
Q 021147 213 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELI 291 (317)
Q Consensus 213 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~ 291 (317)
|....+.-.++.....+.+++.... +.++ ..||.|||.|+.+|.+|+++|++++|||||- ||...+..
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~l---k~~v--------r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFL---KWPV--------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhh---hhhh--------hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 3333344556677777777764222 4555 8999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 292 IVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 292 l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+.++++.+. +.|.+..+...||||
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 99999998764 678889999998886
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=238.09 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=125.9
Q ss_pred EEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhc
Q 021147 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKI 187 (317)
Q Consensus 108 IvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~i 187 (317)
|+||||||||||+|+|+|+++ |++|+|.++|++ +...+. .++ .+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~----------------------i~~~~~--~~~-------~i 44 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGED----------------------VTNVPP--HLR-------HI 44 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEE----------------------CCCCCH--HHC-------CE
Confidence 689999999999999999999 999999999986 333322 222 39
Q ss_pred cccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 188 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 188 g~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
||++|++.+|+ .+|+++|+.++....... ....+++.++++.+++.... +... .+|||||+||++||
T Consensus 45 ~~v~q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgGq~qRvala 112 (325)
T TIGR01187 45 NMVFQSYALFP-HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFA---DRKP--------HQLSGGQQQRVALA 112 (325)
T ss_pred EEEecCccccC-CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchh---cCCh--------hhCCHHHHHHHHHH
Confidence 99999987654 589999999864322212 23345677888888874221 2223 68999999999999
Q ss_pred ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 267 ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 267 ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
|||+.+|+++|||||++ ||+.++..+.+.|+++.+. ..|++..+...+|||
T Consensus 113 raL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999 9999999999999988653 446666666667764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=218.65 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=142.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||++.|+.+.|..+.. ....+|+++||+|++|+++.|+|.||||||||++.|+|-+. |++|+|+++|.+
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~d----- 69 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVD----- 69 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECcee-----
Confidence 5778888888754432 23344999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCC---C----hHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGD---S----DVEKQ 222 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~---~----~~~~~ 222 (317)
++.++..+.... ++-|+|+|. -..+.+||.||+.++...... . +...+
T Consensus 70 -----------------Vtk~~~~~RA~~-------larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~ 125 (263)
T COG1101 70 -----------------VTKKSVAKRANL-------LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS 125 (263)
T ss_pred -----------------cccCCHHHHhhH-------HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHH
Confidence 566665544444 788999985 244578999999887543211 1 11223
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPY-LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 223 ~~~~~a~~~~l~~-~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
...+-++.+++-. ..+ +.++ .-|||||||-++++.|.++.|++++|||-|+ |||.+...+++.-.++.
T Consensus 126 ~f~~~l~~l~lgLenrL--~~~i--------glLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV 195 (263)
T COG1101 126 SFRERLARLGLGLENRL--SDRI--------GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195 (263)
T ss_pred HHHHHHhhcccchhhhh--cChh--------hhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHH
Confidence 3334444444411 111 2233 5799999999999999999999999999999 99999999999988876
Q ss_pred Hh
Q 021147 301 EH 302 (317)
Q Consensus 301 ~~ 302 (317)
+.
T Consensus 196 ~~ 197 (263)
T COG1101 196 EE 197 (263)
T ss_pred Hh
Confidence 54
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=255.46 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=135.7
Q ss_pred eEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE-----------ECcc
Q 021147 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNSS 144 (317)
Q Consensus 76 nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~-----------i~g~ 144 (317)
+++++|+.+..+ |++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|+
T Consensus 78 ~~~~~yg~~~~~-----L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G~ 146 (590)
T PRK13409 78 EPVHRYGVNGFK-----LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRGT 146 (590)
T ss_pred CceEEecCCcee-----EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCCh
Confidence 489999765444 99999 999999999999999999999999999999 9999997 5665
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccc----ccccccchhhHHHHHHhhhccCCCChHH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS----VIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q----~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+ +.. +..........+++.+| .+.++. .||.+++... ..
T Consensus 147 ~----------------------l~~-----~~~~~~~~~~~~~~~~q~~~~~p~~~~--~tv~e~l~~~--------~~ 189 (590)
T PRK13409 147 E----------------------LQN-----YFKKLYNGEIKVVHKPQYVDLIPKVFK--GKVRELLKKV--------DE 189 (590)
T ss_pred H----------------------HHH-----HHHHHhccCcceeecccchhhhhhhhc--chHHHHHHhh--------hH
Confidence 4 211 11111110111344444 443333 3888888632 12
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..++.++++.+++.... +..+ .+|||||+||++||+|++.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 190 ~~~~~~~l~~l~l~~~~---~~~~--------~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 190 RGKLDEVVERLGLENIL---DRDI--------SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred HHHHHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34577888888874221 3444 7999999999999999999999999999999 9999999999999998
Q ss_pred HH-----hcCCCcchhhcccCCC
Q 021147 300 LE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~-----~~~~~~~~~~~~~~~~ 317 (317)
.+ ..+|++..+..++|+|
T Consensus 259 ~~g~tvIivsHd~~~l~~~~D~v 281 (590)
T PRK13409 259 AEGKYVLVVEHDLAVLDYLADNV 281 (590)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEE
Confidence 53 2466677777777764
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=215.52 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=149.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+.+++++||+.+..+.+.+ |++|||+|++||+++|+||||||||||.+.|+|.-.+. +++|+|.++|++
T Consensus 1 m~~L~I~dLhv~v~~~keI-----LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~Ged--- 69 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEI-----LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGED--- 69 (251)
T ss_pred CceeEEeeeEEEecCchhh-----hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce---EecceEEECCcc---
Confidence 4589999999999764344 99999999999999999999999999999999996433 899999999998
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-C---CChHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-G---DSDVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~---~~~~~~~~~ 224 (317)
+..+++.+..+. .|.+-+|.|.-+++ .++.+.+....... . ......+++
T Consensus 70 -------------------I~~l~~~ERAr~------GifLafQ~P~ei~G-V~~~~fLr~a~n~~~~~~~~~~~~~~~~ 123 (251)
T COG0396 70 -------------------ILELSPDERARA------GIFLAFQYPVEIPG-VTNSDFLRAAMNARRGARGILPEFIKEL 123 (251)
T ss_pred -------------------cccCCHhHHHhc------CCEEeecCCccCCC-eeHHHHHHHHHHhhhccccccHHHHHHH
Confidence 667777654432 36777999876665 46666665432111 1 123456778
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.++++.++++..-+..... ..+|||+|.|..|+++++.+|++.|||||.| ||..+-+.+.+.+..++..
T Consensus 124 ~e~~~~l~~~~~~l~R~vN---------~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 124 KEKAELLGLDEEFLERYVN---------EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred HHHHHHcCCCHHHhhcccC---------CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 8899999985432333344 5899999999999999999999999999999 9999999999999987643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=267.06 Aligned_cols=190 Identities=13% Similarity=0.087 Sum_probs=141.6
Q ss_pred ceEEEeEEEEcCCCCc-------cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 71 LTDAKNKILSYTPGAW-------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~-------~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
.+.++||++.++.... .....+|+|||+++++|+++||+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~inG 943 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 943 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEEECC
Confidence 4899999998742100 00112399999999999999999999999999999999997632 4789999999
Q ss_pred ccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCC--hH
Q 021147 144 SVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDS--DV 219 (317)
Q Consensus 144 ~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~--~~ 219 (317)
.+ . +...+++. +||++|+..++ ..+||+||+.+... .+... ..
T Consensus 944 ~~----------------------~---~~~~~~~~-------igyv~Q~d~~~-~~lTV~E~L~~~a~lr~~~~~~~~~ 990 (1470)
T PLN03140 944 FP----------------------K---KQETFARI-------SGYCEQNDIHS-PQVTVRESLIYSAFLRLPKEVSKEE 990 (1470)
T ss_pred cc----------------------C---ChHHhhhh-------eEEEccccccC-CCCcHHHHHHHHHHhCCCCCCCHHH
Confidence 75 2 11223333 99999987644 46899999987532 12221 22
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..+.+.++++.+++.... ...++..+ ...||||||||++||++|+.+|++++|||||+ ||+.+...+.+.|++
T Consensus 991 ~~~~v~~vl~~lgL~~~~-----~~~vg~~~-~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 991 KMMFVDEVMELVELDNLK-----DAIVGLPG-VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred HHHHHHHHHHHCCChhHh-----CCccCCCC-CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 334577889998874211 12122111 14799999999999999999999999999999 999999999999999
Q ss_pred HHHh
Q 021147 299 CLEH 302 (317)
Q Consensus 299 l~~~ 302 (317)
+.+.
T Consensus 1065 l~~~ 1068 (1470)
T PLN03140 1065 TVDT 1068 (1470)
T ss_pred HHHC
Confidence 8643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=243.69 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=156.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.++|++...++... .....|++||.++++||++||+||||||||||+++|+|....+ ...+|+|++||+.
T Consensus 24 ~~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG~~---- 96 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNGRP---- 96 (613)
T ss_pred ceeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEECCcc----
Confidence 35889999988865421 0112299999999999999999999999999999999999732 2579999999964
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCC--CChHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEG--DSDVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~--~~~~~~~~~~ 225 (317)
.+.+.+++. +|||.|+-. +.+.+||+|++.+... .+. ..++.++++.
T Consensus 97 ---------------------~~~~~~~~~-------s~yV~QdD~-l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~ 147 (613)
T KOG0061|consen 97 ---------------------RDSRSFRKI-------SGYVQQDDV-LLPTLTVRETLRFSALLRLPSSLSKEEKRERVE 147 (613)
T ss_pred ---------------------Cchhhhhhe-------eEEEccccc-ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 344556665 999999885 4457999999988642 333 2355667888
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcC
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHAD 304 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~ 304 (317)
+++..+++. +-.+++++..+. ..+|||||+|+++|.-++.+|++++|||||+ ||..+...+.+.|+++.+. +
T Consensus 148 ~vi~~LgL~-----~~~~t~ig~~~~-rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-g 220 (613)
T KOG0061|consen 148 EVISELGLE-----KCADTLIGNPGI-RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-G 220 (613)
T ss_pred HHHHHcCCh-----hhccceecCCCC-CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-C
Confidence 899999863 235667776643 7899999999999999999999999999999 9999999999999998766 5
Q ss_pred CCc
Q 021147 305 RNL 307 (317)
Q Consensus 305 ~~~ 307 (317)
+-+
T Consensus 221 rtV 223 (613)
T KOG0061|consen 221 RTV 223 (613)
T ss_pred CEE
Confidence 543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-28 Score=250.85 Aligned_cols=213 Identities=12% Similarity=0.030 Sum_probs=136.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++|++|+|++.. + |+|+||+|++|+++||||+||||||||+|+|+|.... ..|.+|+|.+.++.
T Consensus 176 ~~I~i~nls~~y~~~~-l-----l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~--g~p~~g~I~~~~Q~---- 243 (718)
T PLN03073 176 KDIHMENFSISVGGRD-L-----IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID--GIPKNCQILHVEQE---- 243 (718)
T ss_pred eeEEEceEEEEeCCCE-E-----EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCCCCEEEEEecc----
Confidence 4799999999997543 4 9999999999999999999999999999999997521 13888998865442
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-----------------
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS----------------- 212 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~----------------- 212 (317)
... ..++..+... ..+ ......+.+.+++++|.+.+... +..+|......
T Consensus 244 -----~~g-~~~t~~~~v~-~~~----~~~~~~~~~~~~~~~q~~~l~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 310 (718)
T PLN03073 244 -----VVG-DDTTALQCVL-NTD----IERTQLLEEEAQLVAQQRELEFE--TETGKGKGANKDGVDKDAVSQRLEEIYK 310 (718)
T ss_pred -----CCC-CCCCHHHHHH-Hhh----HHHHHHHHHHHHHHHHHHHhhhc--ccccccccccccccchHHHHHHHHHHHH
Confidence 100 0000000000 000 01111112337788776543221 11111110000
Q ss_pred -cC-CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH
Q 021147 213 -ME-GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 213 -~~-~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
+. ........++.+++..+++.... ...++ .+|||||+||++|||||+.+|+++||||||+ ||+.+.
T Consensus 311 ~~~~~~~~~~~~r~~~~L~~lgl~~~~--~~~~~--------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 311 RLELIDAYTAEARAASILAGLSFTPEM--QVKAT--------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHHhcCcchHHHHHHHHHHHCCCChHH--HhCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 00 00011233455566666653111 13344 7999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHH---hcCCCcchhhcccCCC
Q 021147 290 LIIVDMLRYCLE---HADRNLSCKSCARNKV 317 (317)
Q Consensus 290 ~~l~~~l~~l~~---~~~~~~~~~~~~~~~~ 317 (317)
..+.+.|+++.. ...|+...+..++|++
T Consensus 381 ~~l~~~L~~~~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 381 LWLETYLLKWPKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 999999988621 2567777777777764
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=238.52 Aligned_cols=212 Identities=18% Similarity=0.126 Sum_probs=144.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|.++|+++.|++.. + ++++||+|.+|+.+||||+||||||||+|+|+|... |++|+|...+. .++
T Consensus 1 m~~i~~~~ls~~~g~~~-l-----~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~~v 68 (530)
T COG0488 1 MSMITLENLSLAYGDRP-L-----LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-LRV 68 (530)
T ss_pred CceEEEeeeEEeeCCce-e-----ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-ceE
Confidence 46899999999996554 4 999999999999999999999999999999999999 99999998875 468
Q ss_pred eeEecccCCCCcccccceeeccCC-hHHHHHHHHHhhhhccccccccccccchhhHHHHHH--hhhccCCCChHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA--VLKSMEGDSDVEKQYNQ 225 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~--~~~~~~~~~~~~~~~~~ 225 (317)
+|+.|++.+++.-++.+..+.... ...+.+......... + ++ ......-+. +..... -....++.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~---~-~~-----~~~~~~~l~~~~~~~~~---~~~e~~~~ 136 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL---A-DP-----DDELLAELEALLEELDG---WTLEARAE 136 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhc---c-cc-----hhHHHHHHHHHHHhhcc---cchHHHHH
Confidence 999999888765544443332211 112221111111000 0 00 001111111 001111 12234466
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE--- 301 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~--- 301 (317)
.++..++++.. ..++ .+||||||.|+++|+||..+|++|+|||||+ ||.++..-+.+.|.++.-
T Consensus 137 ~~L~gLg~~~~----~~~~--------~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtvi 204 (530)
T COG0488 137 EALLGLGFPDE----DRPV--------SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVI 204 (530)
T ss_pred HHHhcCCCCcc----cCch--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEE
Confidence 67777776422 3455 7999999999999999999999999999999 999999988888876421
Q ss_pred hcCCCcchhhcccCC
Q 021147 302 HADRNLSCKSCARNK 316 (317)
Q Consensus 302 ~~~~~~~~~~~~~~~ 316 (317)
..+|+=++..++|++
T Consensus 205 iVSHDR~FLd~V~t~ 219 (530)
T COG0488 205 VVSHDRYFLDNVATH 219 (530)
T ss_pred EEeCCHHHHHHHhhh
Confidence 134454555555544
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=212.06 Aligned_cols=170 Identities=13% Similarity=0.132 Sum_probs=135.5
Q ss_pred ccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeec
Q 021147 90 VGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIR 169 (317)
Q Consensus 90 ~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~ 169 (317)
+.+|+||||++++||.+||||+||||||||+|+|+|.++ |++|+|.++|+-..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~---------------------- 92 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP---------------------- 92 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh----------------------
Confidence 345999999999999999999999999999999999999 99999999997300
Q ss_pred cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe
Q 021147 170 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248 (317)
Q Consensus 170 ~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~ 248 (317)
-++ - ..|+ .+.+|.+||+.+..... ....+.+++..++.+-+.+-... ..|+
T Consensus 93 li~-----l-------g~Gf--------~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi---~~Pv---- 145 (249)
T COG1134 93 LIE-----L-------GAGF--------DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI---DQPV---- 145 (249)
T ss_pred hhh-----c-------ccCC--------CcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---hCch----
Confidence 000 0 0443 34578999998754333 33345566666776666653222 4676
Q ss_pred ccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 249 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 249 hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
..+|-||+.|++++-|...+|++||+||..+ .|+.=+++=.+.+.++.+. .+|++..+..+|||+
T Consensus 146 ----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~ 217 (249)
T COG1134 146 ----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA 217 (249)
T ss_pred ----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee
Confidence 8999999999999999999999999999999 9999999988888888543 788899999999985
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=234.35 Aligned_cols=184 Identities=17% Similarity=0.201 Sum_probs=140.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
...++++|+++.|++...+ ++++||.|.+|+.+|||||||||||||+|+|+|... |.+|+|.+.-. ..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l-----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~~-v~- 386 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGET-VK- 386 (530)
T ss_pred CeeEEEeccccccCCCcee-----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCCc-eE-
Confidence 4579999999999765444 999999999999999999999999999999999999 89999997544 34
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+||.+|+...+....|+.+++.-..+ .. .+..+...+
T Consensus 387 --------------------------------------igyf~Q~~~~l~~~~t~~d~l~~~~~--~~---~e~~~r~~L 423 (530)
T COG0488 387 --------------------------------------IGYFDQHRDELDPDKTVLEELSEGFP--DG---DEQEVRAYL 423 (530)
T ss_pred --------------------------------------EEEEEehhhhcCccCcHHHHHHhhCc--cc---cHHHHHHHH
Confidence 45555544222133456666542211 11 144577888
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~ 304 (317)
..++++-... ..++ ..||||||.|+.+|+.+..+|.+|||||||+ ||..+...+.++|..+- -..+
T Consensus 424 ~~f~F~~~~~--~~~v--------~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VS 493 (530)
T COG0488 424 GRFGFTGEDQ--EKPV--------GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVS 493 (530)
T ss_pred HHcCCChHHH--hCch--------hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 8888752221 3455 7899999999999999999999999999999 99999999999998863 1356
Q ss_pred CCcchhhcccCCC
Q 021147 305 RNLSCKSCARNKV 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
|+-+++..+++++
T Consensus 494 HDr~Fl~~va~~i 506 (530)
T COG0488 494 HDRYFLDRVATRI 506 (530)
T ss_pred CCHHHHHhhcceE
Confidence 6777777766653
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=197.55 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=132.9
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.+.++++++|+.|+.... .+||||++.|||+++|||+||||||||+++|++-+. |++|+|.+...+..
T Consensus 3 ~~PLL~V~~lsk~Yg~~~g------c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~ 71 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQ 71 (258)
T ss_pred CCcceeehhhhhhhCCCcC------ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCC
Confidence 3568999999999987654 999999999999999999999999999999999999 99999998765311
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHH-----HhhhccCCCChHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGL-----AVLKSMEGDSDVEK 221 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni-----~~~~~~~~~~~~~~ 221 (317)
...+..+...+.|..+ ...-|+|.|+|.- +....+.--|| +.+..... ...
T Consensus 72 -----------------~~dl~~msEaeRR~L~---RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG---~iR 128 (258)
T COG4107 72 -----------------PRDLYTMSEAERRRLL---RTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG---NIR 128 (258)
T ss_pred -----------------chhHhhhchHHHHHHh---hhccceeecCccccceeeeccCCccchhHHhhhhhhhh---hHH
Confidence 0011122222222211 1236999998741 11111112232 12221111 112
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.....++.+.++.... +..+ ..+|||++||+.|||-|...|++.++||||- ||...+..+.++++.+.
T Consensus 129 ~~a~~WL~~VEI~~~Ri-DD~P---------rtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv 198 (258)
T COG4107 129 AEAQDWLEEVEIDLDRI-DDLP---------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198 (258)
T ss_pred HHHHHHHHhcccCcccc-cCcc---------cccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 22344566666643322 2344 5899999999999999999999999999999 99999999999999886
Q ss_pred H
Q 021147 301 E 301 (317)
Q Consensus 301 ~ 301 (317)
.
T Consensus 199 ~ 199 (258)
T COG4107 199 R 199 (258)
T ss_pred H
Confidence 4
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=202.55 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=103.3
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|+||+|++|++++|+||||||||||+|+|. +++|+|.+++.. ...
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~-----------------------~~~ 57 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFL-----------------------PKF 57 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcc-----------------------ccc
Confidence 399999999999999999999999999999983 348999987752 001
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. +.. ++|++| .++++.+++....+ +...
T Consensus 58 ~----~~~-------~~~~~q--------------------------------~~~l~~~~L~~~~~--~~~~------- 85 (176)
T cd03238 58 S----RNK-------LIFIDQ--------------------------------LQFLIDVGLGYLTL--GQKL------- 85 (176)
T ss_pred c----ccc-------EEEEhH--------------------------------HHHHHHcCCCcccc--CCCc-------
Confidence 0 111 555443 23455566521111 2233
Q ss_pred hhcCcHHHHHhhcccceeccc--cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCC
Q 021147 252 LLSLTDRARIRTYLGELLGIP--PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~--p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
.+||+||+||+++|||++.+ |+++|||||++ ||+.+...+.+.++++.+. ..|+...+. .+||
T Consensus 86 -~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~ 157 (176)
T cd03238 86 -STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADW 157 (176)
T ss_pred -CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 68999999999999999999 99999999999 9999999999999987532 445555443 3554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=255.90 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=128.5
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+|||+++++||+++|+||||||||||+|+|+|+..+ ...|++|+|.++|++ +...
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~----------------------~~~~ 132 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGIT----------------------PEEI 132 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEe----------------------hHHH
Confidence 59999999999999999999999999999999999631 011789999999975 2111
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CC----C-ChHH-HHH-HHHHHHHcCCCcccCCCCC
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EG----D-SDVE-KQY-NQIVATTFNCPYLSFRDDK 242 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~----~-~~~~-~~~-~~~~a~~~~l~~~~l~~~~ 242 (317)
. ...+ +.++|++|+..++ ..+||+||+.+.... +. . .... .++ +..+++.+++.. -.
T Consensus 133 ~-~~~r-------~~i~yv~Q~d~~~-~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----~~ 198 (1394)
T TIGR00956 133 K-KHYR-------GDVVYNAETDVHF-PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-----TR 198 (1394)
T ss_pred H-hhcC-------ceeEEeccccccC-CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-----cc
Confidence 1 1122 2399999987654 468999999885321 11 1 1111 223 245788888632 12
Q ss_pred CEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 243 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 243 ~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+.++.. ....||||||||++||++++.+|++++|||||+ ||+.+...+.+.|+++.+.
T Consensus 199 ~t~vg~~-~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~ 258 (1394)
T TIGR00956 199 NTKVGND-FVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANI 258 (1394)
T ss_pred CceeCCC-cCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 2323321 115799999999999999999999999999999 9999999999999998754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-26 Score=250.54 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=128.0
Q ss_pred cCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc---CcEEEECcccCceeeEecccCCCCccccccee
Q 021147 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 91 ~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~---~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
.+|+|+|+.|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++|++
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~---------------------- 231 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYR---------------------- 231 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEe----------------------
Confidence 35999999999999999999999999999999999998 77 9999999986
Q ss_pred eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC--C-------CChHHH-----------------
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME--G-------DSDVEK----------------- 221 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~--~-------~~~~~~----------------- 221 (317)
+.+.. .++. ++|++|+..++ ..+||+||+.|..... . .....+
T Consensus 232 ~~~~~---~~~~-------i~yv~Q~d~~~-~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~ 300 (1470)
T PLN03140 232 LNEFV---PRKT-------SAYISQNDVHV-GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKA 300 (1470)
T ss_pred chhhc---ccce-------eEEecccccCC-CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHH
Confidence 22221 1223 99999987544 4689999998853211 0 000000
Q ss_pred ---------HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHH
Q 021147 222 ---------QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELI 291 (317)
Q Consensus 222 ---------~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~ 291 (317)
..+..+++.+|+.. ..++.++.. ....||||||||++||++++.+|+++++||||+ ||+.+...
T Consensus 301 ~~~~~~~~~~~~~~~L~~lGL~~-----~~~t~vg~~-~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~ 374 (1470)
T PLN03140 301 TAMEGVKSSLITDYTLKILGLDI-----CKDTIVGDE-MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 374 (1470)
T ss_pred hhhhcchhhHHHHHHHHHcCCcc-----ccCceeCCc-cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHH
Confidence 11345677777631 233334332 126899999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHh
Q 021147 292 IVDMLRYCLEH 302 (317)
Q Consensus 292 l~~~l~~l~~~ 302 (317)
+.+.|+++.+.
T Consensus 375 i~~~Lr~la~~ 385 (1470)
T PLN03140 375 IVKCLQQIVHL 385 (1470)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=221.50 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=148.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHcc------ccccccC--------C--CCceEEEeEEEEcCCCCccccccCceeeeeEe
Q 021147 37 SRDSWDSLVDQRRRDAVFREVLQS------YDQLRTR--------I--GSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100 (317)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------~--~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I 100 (317)
....+..+.+-++...|+.++... ++..... . ...|+++||+..-++++.. |++.||+|
T Consensus 342 fi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~l-----l~~l~~~v 416 (604)
T COG4178 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL-----LSELNFEV 416 (604)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCee-----eccceeee
Confidence 344455555666666777665421 1111111 1 4689999999999887655 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++|+.+-|.||||||||||+|+|+|+++ ..+|+|.+-...
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~~~----------------------------------- 456 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPADS----------------------------------- 456 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCCCC-----------------------------------
Confidence 9999999999999999999999999999 778887743110
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcc--cCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL--SFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~l~~~~~~~i~~hg~~~~LSgG 258 (317)
.+-|+||.|++-. .|++|-+++...... -..+++.+++..++++.. ++.+.-+ =+ ..||+|
T Consensus 457 -----~~lflpQ~PY~p~--GtLre~l~YP~~~~~---~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~--~vLS~G 519 (604)
T COG4178 457 -----ALLFLPQRPYLPQ--GTLREALCYPNAAPD---FSDAELVAVLHKVGLGDLAERLDEEDR-----WD--RVLSGG 519 (604)
T ss_pred -----ceEEecCCCCCCC--ccHHHHHhCCCCCCC---CChHHHHHHHHHcCcHHHHHHHhccCc-----Hh--hhcChh
Confidence 1567788775443 378888876543221 334568899999998422 1111111 02 689999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
||||+++||++++.|++++|||+|+ ||+.++..+.+++++-
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh
Confidence 9999999999999999999999999 9999999999999884
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=205.33 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=162.0
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCCCccccccCceeeeeEecC
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 102 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~ 102 (317)
.+.+|+++.......+..++.++.++.++-..++...- +.-..|+++||.|.|.....- +..||++|++
T Consensus 274 flr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~Fh-----vgPiNl~ikr 348 (546)
T COG4615 274 FLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFH-----VGPINLTIKR 348 (546)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCcccce-----ecceeeEEec
Confidence 57899999999999999999999999876543322111 122359999999999776543 8899999999
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
||++-|+|.||||||||+++|.|+|+ |++|+|++||++ +...+++.+|+.
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~p----------------------V~~e~ledYR~L--- 398 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKP----------------------VSAEQLEDYRKL--- 398 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCcc----------------------CCCCCHHHHHHH---
Confidence 99999999999999999999999999 999999999998 667778888887
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC-CcccCCC-CCCEEEEeccchhcCcHHHH
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC-PYLSFRD-DKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l-~~~~l~~-~~~~~i~~hg~~~~LSgG~~ 260 (317)
++-|+.|.++|+... + .... ...+.+..-++.+.+ +...+.+ .... ..||-|||
T Consensus 399 ----fSavFsDyhLF~~ll--------~-~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~--------~kLStGQk 454 (546)
T COG4615 399 ----FSAVFSDYHLFDQLL--------G-PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSN--------LKLSTGQK 454 (546)
T ss_pred ----HHHHhhhHhhhHhhh--------C-CccC---CChHHHHHHHHHHHHhhhhcccCCcccc--------cccccchH
Confidence 676777776665310 1 1110 111223333444333 2222322 2333 68999999
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+|+++--|++.+-++++|||=.+ -||.-++.+.+.+--+++
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK 496 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK 496 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH
Confidence 99999999999999999999999 999999998876655443
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=232.45 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=155.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.++|+++.|+....+ ++++||.|++||+.|+.|+|||||||++|+|.|... |++|+++++|.+
T Consensus 563 ~~~~~~~L~k~y~~~~~A-----v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~---- 628 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGA-----VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHD---- 628 (885)
T ss_pred ceEEEcceeeeecchhhh-----hcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCc----
Confidence 468999999999766533 999999999999999999999999999999999999 999999998876
Q ss_pred eEecccCCCCcccccceeecc-CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
+.. .+....++. +||+||.-.++. .+|.+|.+.+......-. +.-.+.+..+
T Consensus 629 ------------------i~~~~~~~~~~~~-------iGyCPQ~d~l~~-~lT~rEhL~~~arlrG~~~~di~~~v~~l 682 (885)
T KOG0059|consen 629 ------------------ITVSTDFQQVRKQ-------LGYCPQFDALWE-ELTGREHLEFYARLRGLPRSDIGSAIEKL 682 (885)
T ss_pred ------------------cccccchhhhhhh-------cccCCchhhhhh-hccHHHHHHHHHHHcCCChhHHHHHHHHH
Confidence 222 233335555 999999865444 689999998765433322 2334447778
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhc---
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHA--- 303 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~--- 303 (317)
++.+++.... ..++ ..+|||+|.|+..|-|++.+|++++||||++ +||.+++.+.+++.++.++.
T Consensus 683 l~~~~L~~~~---~~~~--------~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ai 751 (885)
T KOG0059|consen 683 LRLVGLGPYA---NKQV--------RTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAI 751 (885)
T ss_pred HHHcCChhhh---ccch--------hhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 9998873222 2334 7999999999999999999999999999999 99999999999999998753
Q ss_pred ---CCCcchhhcccCC
Q 021147 304 ---DRNLSCKSCARNK 316 (317)
Q Consensus 304 ---~~~~~~~~~~~~~ 316 (317)
.|...-.+.+|||
T Consensus 752 iLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 752 ILTSHSMEEAEALCTR 767 (885)
T ss_pred EEEcCCHHHHHHHhhh
Confidence 3444445555555
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=189.22 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.+++.... . +... .+|||||+||+++|||++.+| +++||||||+ ||+.+...+.+.++++.
T Consensus 117 ~~~~l~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~ 186 (226)
T cd03270 117 RLGFLVDVGLGYLT-L-SRSA--------PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR 186 (226)
T ss_pred HHHHHHHCCCCccc-c-cCcc--------CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 35677888874211 1 2233 689999999999999999998 5999999999 99999999999999875
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
+. ..|+...+. .+|||
T Consensus 187 ~~g~tii~itH~~~~~~-~~d~i 208 (226)
T cd03270 187 DLGNTVLVVEHDEDTIR-AADHV 208 (226)
T ss_pred hCCCEEEEEEeCHHHHH-hCCEE
Confidence 42 445555543 56653
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-24 Score=188.45 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=106.2
Q ss_pred c-eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCC----CCCcCcEEEECcccCceeeEecccCCCCccccccee
Q 021147 93 M-TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 93 L-~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~----~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
+ ++++|++.+| +++|+||||||||||+++|+|+..+.. ..+..|++.++|++
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------- 68 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSE---------------------- 68 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCC----------------------
Confidence 5 6799999999 999999999999999999999987210 01122334444432
Q ss_pred eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 247 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~ 247 (317)
... ...+ .+|++++|++..+. ... ...++.++++..+ .. ....
T Consensus 69 ~~~---~~~~-------~~v~~vfq~~~~~~-----------~~~-------~~~~~~~~l~~~~-----~~-~~~~--- 111 (197)
T cd03278 69 TRK---PANF-------AEVTLTFDNSDGRY-----------SII-------SQGDVSEIIEAPG-----KK-VQRL--- 111 (197)
T ss_pred CCC---CCce-------EEEEEEEEcCCCce-----------eEE-------ehhhHHHHHhCCC-----cc-ccch---
Confidence 111 0111 23999999886541 100 0123445555411 11 2233
Q ss_pred eccchhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 248 THGDLLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 248 ~hg~~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+||+||+||+++|++++ ..|++++||||++ ||+.+...+.+.++++.+. ..|+...+ ..+|++
T Consensus 112 -----~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v 185 (197)
T cd03278 112 -----SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRL 185 (197)
T ss_pred -----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceE
Confidence 689999999999999986 4669999999999 9999999999999987431 34444443 345553
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-23 Score=175.35 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=133.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
++.++||+..- . |-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.+
T Consensus 3 l~qln~v~~~t----R------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~----- 61 (248)
T COG4138 3 LMQLNDVAEST----R------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQP----- 61 (248)
T ss_pred eeeeccccccc----c------ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcc-----
Confidence 57788887533 2 66799999999999999999999999999999998 679999999997
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..+...++.++ -+|+.|... -.+.+-|+..+.+..+ .+....++.+++..
T Consensus 62 -----------------l~~~~~~eLArh-------RAYLsQqq~-p~f~mpV~~YL~L~qP----~~~~a~~i~~i~~~ 112 (248)
T COG4138 62 -----------------LEAWSATELARH-------RAYLSQQQT-PPFAMPVWHYLTLHQP----DKTRTELLNDVAGA 112 (248)
T ss_pred -----------------hhHHhHhHHHHH-------HHHHhhccC-CcchhhhhhhhhhcCc----hHHHHHHHHHHHhh
Confidence 666776667666 677766443 2234567777664322 13445568889999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc-----cc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI-----PP--AKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~-----~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.... +..+ .+|||||.||+.+|-.+.. || +++++|||.+ ||...+..+-..+.+++..
T Consensus 113 L~l~DKL---~Rs~--------~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 113 LALDDKL---GRST--------NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred hcccchh---hhhh--------hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence 9885332 4555 7999999999999988874 44 6899999999 9999999999998888754
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=200.71 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=135.6
Q ss_pred CCceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
...|++++|++.-|+ +... ++|+||+|+.|+.+.|.||||||||+|+|.|.||++ ..+|++..-.+.
T Consensus 431 Dn~i~~e~v~l~tPt~g~~l-----ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~-- 498 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLL-----IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDG-- 498 (659)
T ss_pred cceEEeeeeeecCCCCCcee-----eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccC--
Confidence 357999999999987 4443 888999999999999999999999999999999999 899999854432
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCCCChHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEGDSDVEKQYNQ 225 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~~~~~~~~~~~ 225 (317)
.+ +.+=|+||.|....+ |++|.+-+... +........+.+.
T Consensus 499 -----------------------~~------------~~lfflPQrPYmt~G--TLRdQvIYP~~~~~~~~~~~~d~~i~ 541 (659)
T KOG0060|consen 499 -----------------------GP------------KDLFFLPQRPYMTLG--TLRDQVIYPLKAEDMDSKSASDEDIL 541 (659)
T ss_pred -----------------------CC------------CceEEecCCCCcccc--chhheeeccCccccccccCCCHHHHH
Confidence 00 015567777653333 66776655421 1222233445677
Q ss_pred HHHHHcCC-CcccCCCCCCEEEEec-cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 226 IVATTFNC-PYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 226 ~~a~~~~l-~~~~l~~~~~~~i~~h-g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
..++.+++ ++.....|.+..+.-. . ..||+||+||++.||.+++.|+.-||||.|| +|...|..+...+++.
T Consensus 542 r~Le~v~L~hl~~r~ggld~~~~~dW~--dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 542 RILENVQLGHLLEREGGLDQQVDWDWM--DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHhhhhhHHHHhCCCCchhhccHH--hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 77887777 4444444665332222 3 4799999999999999999999999999999 9999999999888775
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-22 Score=182.90 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=122.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHh-----hcccCCCCCCcCcEEEECccc-CceeeEecccCCC-C--cc-c
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERAQVTYNSSV-GDGTYFLQEYTIP-R--GV-R 162 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~-----Gl~~p~~~~p~~G~I~i~g~~-~~~~~~~Q~~~l~-~--~~-~ 162 (317)
|+|||++|+.|..++|+|.||||||||++.+. ..+......|..++...+... ..+-++-|.+.-. + ++ +
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 99999999999999999999999999998652 211110011333332222111 1122333332100 0 00 0
Q ss_pred -cc------ceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCc
Q 021147 163 -HG------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY 235 (317)
Q Consensus 163 -~~------~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 235 (317)
.+ .+....-.-..+.... -.+.|..++...+ ..+|+.|++.|..... ..++..++++.+++..
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~----l~~~~~g~~i~~v-~~ltv~e~~~~~~~~~-----~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRET----LEVRYKGKSIADV-LDMTVEEALEFFENIP-----KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHH----HhcCcCCCCHHHH-hcCCHHHHHHHHHhhh-----hHHHHHHHHHHcCCch
Confidence 00 0000000000011111 1166766655433 3679999998765432 1345677888888743
Q ss_pred ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCC
Q 021147 236 LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADR 305 (317)
Q Consensus 236 ~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~ 305 (317)
..+ +... .+|||||+||+++||+|..+ |+++||||||+ ||+.....+.+.++++.+. ..|
T Consensus 161 l~l--~~~~--------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 161 IKL--GQPA--------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred hhh--cCcc--------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 111 3444 78999999999999999996 79999999999 9999999999999998642 455
Q ss_pred CcchhhcccCC
Q 021147 306 NLSCKSCARNK 316 (317)
Q Consensus 306 ~~~~~~~~~~~ 316 (317)
++..+. .+|+
T Consensus 231 ~~~~i~-~aD~ 240 (261)
T cd03271 231 NLDVIK-CADW 240 (261)
T ss_pred CHHHHH-hCCE
Confidence 555553 3554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=198.13 Aligned_cols=186 Identities=15% Similarity=0.190 Sum_probs=136.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.+.|-+.||+|.|.++..+ +++++|-|..++.+|+|||||||||||+|+++|.+. |+.|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~~i-----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~-- 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMI-----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHN-- 453 (614)
T ss_pred CCCeEEEeccccCCCCcchh-----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccc--
Confidence 35679999999999877554 999999999999999999999999999999999999 999998844332
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
.+. .+.++..+ | +....+..++.. ..++. ....+.+..+
T Consensus 454 ----------------------~~~--~y~Qh~~e---------~----ldl~~s~le~~~--~~~~~--~~~~e~~r~i 492 (614)
T KOG0927|consen 454 ----------------------KLP--RYNQHLAE---------Q----LDLDKSSLEFMM--PKFPD--EKELEEMRSI 492 (614)
T ss_pred ----------------------cch--hhhhhhHh---------h----cCcchhHHHHHH--Hhccc--cchHHHHHHH
Confidence 011 11222100 0 111223444432 22222 2234557788
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hc
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HA 303 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~ 303 (317)
+..+|+.-. ....++ .+||+|||.||.+|+.....|.+|||||||+ ||..+...+.++|.++-- ..
T Consensus 493 lgrfgLtgd--~q~~p~--------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~v 562 (614)
T KOG0927|consen 493 LGRFGLTGD--AQVVPM--------SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLV 562 (614)
T ss_pred HHHhCCCcc--ccccch--------hhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeee
Confidence 999997411 124555 7999999999999999999999999999999 999999999999988632 14
Q ss_pred CCCcchhhcccCC
Q 021147 304 DRNLSCKSCARNK 316 (317)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (317)
+|++..++.++++
T Consensus 563 SHDfrlI~qVaeE 575 (614)
T KOG0927|consen 563 SHDFRLISQVAEE 575 (614)
T ss_pred echhhHHHHHHHH
Confidence 5666666666654
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=183.96 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=105.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCC--Cc-CcEEEECccc---
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA--SE-RAQVTYNSSV--- 145 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~--p~-~G~I~i~g~~--- 145 (317)
|+++|.. +|++... +.+++ |++++|+||||||||||+++|++++...... +. .+.+...|..
T Consensus 4 i~~~nfk-sy~~~~~------~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~ 71 (243)
T cd03272 4 VIIQGFK-SYKDQTV------IEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV 71 (243)
T ss_pred EEEeCcc-CcccCcc------cccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC
Confidence 4555543 3654432 66666 7899999999999999999999776411000 00 0122222221
Q ss_pred --CceeeEecccC-CCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh----
Q 021147 146 --GDGTYFLQEYT-IPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD---- 218 (317)
Q Consensus 146 --~~~~~~~Q~~~-l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~---- 218 (317)
..+.++||++. .++... +...++ +.+|+++|+..+.....|..+...+.........
T Consensus 72 ~~~~v~i~~~~~~~~~~~~~---------~~~~i~-------r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~ 135 (243)
T cd03272 72 MSAYVEIIFDNSDNRFPIDK---------EEVRLR-------RTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYY 135 (243)
T ss_pred ceEEEEEEEEcCCCccCCCC---------CEEEEE-------EEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcE
Confidence 12344555421 111000 000111 2288888877655433454444333322111000
Q ss_pred -HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHH
Q 021147 219 -VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 219 -~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l 292 (317)
..+.++.++ +.+.... +... ..||+||+||+++|||++ .+|+++||||||+ ||+.+...+
T Consensus 136 ~~~qg~i~~l---~~l~~~~---~~~~--------~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~ 201 (243)
T cd03272 136 IVPQGKINSL---TNMKQDE---QQEM--------QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAV 201 (243)
T ss_pred EEEcCchHHh---hhccccc---cccc--------cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHH
Confidence 001112222 2211000 1222 689999999999999996 3689999999999 999999999
Q ss_pred HHHHHHHHH
Q 021147 293 VDMLRYCLE 301 (317)
Q Consensus 293 ~~~l~~l~~ 301 (317)
.+.++++.+
T Consensus 202 ~~~l~~~~~ 210 (243)
T cd03272 202 ANMIKELSD 210 (243)
T ss_pred HHHHHHHhC
Confidence 999998743
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=172.61 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=148.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|+.+.++|++..+...+. .+++++++|+++++||+-++||+||||||..+|.|+|..+.. -..+..+.++++.+
T Consensus 1 M~LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~id--- 74 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDID--- 74 (330)
T ss_pred CCcccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccch---
Confidence 467899999999854332 234599999999999999999999999999999999998621 11234445544443
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccc-cccchhhHH----HHHHhhh---ccCCCChHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVV----DGLAVLK---SMEGDSDVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~----eni~~~~---~~~~~~~~~ 220 (317)
+-.+++++.|+. +-+.|+++||+|. -+.+..+|. +||-... .+-.-..-.
T Consensus 75 -------------------LL~L~Pr~RRk~---ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~Wr 132 (330)
T COG4170 75 -------------------LLRLSPRERRKL---VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWR 132 (330)
T ss_pred -------------------hhcCChHHhhhh---hccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchh
Confidence 445666555543 3345888899875 333333332 2331110 000001123
Q ss_pred HHHHHHHHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 221 ~~~~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.++..+++..+|+. .......|+ .+|..|+-|++.||.|++..|+++|.||||+ +++.|+..++.++.+
T Consensus 133 KrrAIeLLHrVGIKdHkDIM~SYP---------~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 133 KRRAIELLHRVGIKDHKDIMRSYP---------YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred HHHHHHHHHHhccccHHHHHHhCc---------chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence 45677889999982 111122577 4999999999999999999999999999999 999999999999998
Q ss_pred HHHh-------cCCCcchhhcccCCC
Q 021147 299 CLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~-------~~~~~~~~~~~~~~~ 317 (317)
+.+. -+|++...+.-+|++
T Consensus 204 mNQn~~TtILL~s~Dl~~is~W~d~i 229 (330)
T COG4170 204 LNQNSNTTILLISHDLQMISQWADKI 229 (330)
T ss_pred hhccCCceEEEEcccHHHHHHHhhhe
Confidence 8654 456677777777764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=204.51 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=136.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|||=-++||..+||+|+||||||||+++|+|...-+ ..+|+|+++|.+ .+
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p-------------------------~~ 858 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFP-------------------------KD 858 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCee-------------------------Cc
Confidence 99999999999999999999999999999999997633 678999999986 22
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh--ccCCC--ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK--SMEGD--SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 248 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~--~~~~~--~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~ 248 (317)
.+.+++. +|||.|+.. ....+||+|-+.|.. +.+.+ .++..+.++++++.++++.. .+.+||.
T Consensus 859 q~tF~R~-------~GYvqQ~Di-H~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-----~daiVG~ 925 (1391)
T KOG0065|consen 859 QETFARV-------SGYVEQQDI-HSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-----ADALVGL 925 (1391)
T ss_pred hhhhccc-------cceeecccc-cCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-----hhhhccC
Confidence 2455555 999988653 346789999998754 22332 23444778889999987422 3456677
Q ss_pred ccchhcCcHHHHHhhcccceecccc-ceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 249 HGDLLSLTDRARIRTYLGELLGIPP-AKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 249 hg~~~~LSgG~~qRl~iaral~~~p-~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
-| ..||..||+|+.||--|+.+| .++.|||||| ||..+...++++++++..
T Consensus 926 ~G--~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~ 978 (1391)
T KOG0065|consen 926 PG--SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD 978 (1391)
T ss_pred CC--CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence 67 789999999999999999999 8999999999 999999999999999865
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-22 Score=184.62 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=100.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEECcc-cCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~g~-~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
..+++||||||||||||+++|++++. +. .|++++.+. +. +..-.....+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~l---------------------i~~~~~~~~~--- 75 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDL---------------------IYKRGQAGIT--- 75 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHH---------------------hhcCCCCCCc---
Confidence 46899999999999999999999998 65 457776654 10 0000000000
Q ss_pred HHhhhhccccccccc--------cccchhhHHHHHHhhhc--c-CCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE--
Q 021147 181 RCKAHKIGCEPSVIR--------KVNFVIFVVDGLAVLKS--M-EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV-- 247 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~--------~~~~~~tv~eni~~~~~--~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~-- 247 (317)
...|++++|++. -+...+||.+++..... + ........+++.++++.++++... ...+|-
T Consensus 76 ---~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~----~~~~i~Qg 148 (251)
T cd03273 76 ---KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNN----PHFLIMQG 148 (251)
T ss_pred ---EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCC----ceEEEeeh
Confidence 012556665531 11223455555543211 1 011122335677777887763110 000000
Q ss_pred -----------eccchhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 248 -----------THGDLLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 248 -----------~hg~~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+....+||+||+||+++|||++ .+|+++|+||||+ ||+.+...+.+.++++.
T Consensus 149 ~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~ 217 (251)
T cd03273 149 RITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF 217 (251)
T ss_pred HHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc
Confidence 00012689999999999999997 5789999999999 99999999999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-21 Score=174.84 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=106.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEec-CCCEEEEEcCCCChHHHHHHHHhh-cccCCCCCCcCcEEEECcccCce
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~-~Ge~vaIvG~SGsGKSTLlklL~G-l~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.|+++|+. .|.+. ++|+|+.. +|++++|+||||||||||+++|++ ++. +..+....+...
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~~~--- 66 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQENLR--- 66 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----CccccccchhHH---
Confidence 47888888 66443 33667654 589999999999999999999996 444 444443322100
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH-
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV- 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~- 227 (317)
..+..... ...|++++|....... +.. +...... ...+.
T Consensus 67 --------------------~~~~~~~~-------~~~v~~~f~~~~~~~~---~~r-------~~gl~~~---~~~~~~ 106 (213)
T cd03279 67 --------------------SVFAPGED-------TAEVSFTFQLGGKKYR---VER-------SRGLDYD---QFTRIV 106 (213)
T ss_pred --------------------HHhcCCCc-------cEEEEEEEEECCeEEE---EEE-------ecCCCHH---HHHHhh
Confidence 00000001 1226777665432111 100 1111110 11111
Q ss_pred -HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc----------ccceeeccCCCC-CCHHHHHHHHHH
Q 021147 228 -ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI----------PPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 228 -a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~----------~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
+....+.. .. .... ..||+||+||+++|||++. +|+++|||||++ ||+.+...+.+.
T Consensus 107 ~l~~g~l~~--~l-~~~~--------~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~ 175 (213)
T cd03279 107 LLPQGEFDR--FL-ARPV--------STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA 175 (213)
T ss_pred hhhhcchHH--Hh-cCCc--------cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11111110 00 1222 6899999999999999975 568999999999 999999999999
Q ss_pred HHHHHHh------cCCCcchhhcccCC
Q 021147 296 LRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 296 l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
++++.+. ..|+.+.+..++|+
T Consensus 176 l~~~~~~~~tii~itH~~~~~~~~~~~ 202 (213)
T cd03279 176 LELIRTENRMVGVISHVEELKERIPQR 202 (213)
T ss_pred HHHHHhCCCEEEEEECchHHHHhhCcE
Confidence 9988642 44555555555554
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=184.62 Aligned_cols=195 Identities=13% Similarity=0.176 Sum_probs=145.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.++++|++..- . ++|+||++.+||++||.|-=|||+|=|+++|.|..+ +.+|+|.++|++
T Consensus 261 ~~~l~v~~l~~~~----~------~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~--- 322 (500)
T COG1129 261 EPVLEVRNLSGGG----K------VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKP--- 322 (500)
T ss_pred CcEEEEecCCCCC----c------eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEE---
Confidence 4568888888432 2 899999999999999999999999999999999888 899999999997
Q ss_pred eeEecccCCCCcccccceeeccCCh-HHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhh--ccC----CCChH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDS-SSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLK--SME----GDSDV 219 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~--~~~----~~~~~ 219 (317)
+.-.++ +.++. .|+|||.|.. -+...++|.+|+.+.. .+. .+...
T Consensus 323 -------------------v~~~sp~~Ai~~-------Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~ 376 (500)
T COG1129 323 -------------------VRIRSPRDAIKA-------GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK 376 (500)
T ss_pred -------------------ccCCCHHHHHHc-------CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHH
Confidence 222222 23333 4999998764 1233578999997652 111 11222
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.++......+.+++-... ...++ ..||||-+||+.|||.|+.+|+++||||||. +|.-++..|.++|++
T Consensus 377 e~~~~~~~~~~l~Ik~~s--~~~~v--------~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~ 446 (500)
T COG1129 377 ERALAERYIRRLRIKTPS--PEQPI--------GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446 (500)
T ss_pred HHHHHHHHHHhcCcccCC--ccchh--------hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHH
Confidence 233445566666652111 13444 7999999999999999999999999999999 999999999999999
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. .+.++.=+-.+||||
T Consensus 447 lA~~G~ail~iSSElpEll~~~DRI 471 (500)
T COG1129 447 LAAEGKAILMISSELPELLGLSDRI 471 (500)
T ss_pred HHHCCCEEEEEeCChHHHHhhCCEE
Confidence 8654 233455555677765
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-21 Score=173.27 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=44.3
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..||+||+||+++|||++. .|+++++||||+ ||+.+...+.+.++++.
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999964 579999999999 99999999999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-20 Score=176.22 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=116.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
+.+-+.+|+|.|++..+. ++.++|-|.--..+|||||||.|||||+++|.|-+. |+.|+.+-+.. ..+|
T Consensus 585 PvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnhr-L~iG 653 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNHR-LRIG 653 (807)
T ss_pred CeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccce-eeee
Confidence 578999999999877765 899999999999999999999999999999999999 99998874432 3344
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
|+-|.++= -+...-|-.+.+.-.-..+. +.....+-
T Consensus 654 ~FdQh~~E--------------------------------------~L~~Eetp~EyLqr~FNlpy------q~ARK~LG 689 (807)
T KOG0066|consen 654 WFDQHANE--------------------------------------ALNGEETPVEYLQRKFNLPY------QEARKQLG 689 (807)
T ss_pred chhhhhHH--------------------------------------hhccccCHHHHHHHhcCCCh------HHHHHHhh
Confidence 44443210 00000111122211100111 01223333
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+|+. ...+-..+ ..|||||+-|+++|..-+..|+++||||||+ ||.++...+.++|.++
T Consensus 690 ~fGL~--sHAHTiki--------kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney 750 (807)
T KOG0066|consen 690 TFGLA--SHAHTIKI--------KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY 750 (807)
T ss_pred hhhhh--hccceEee--------eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc
Confidence 44431 11112223 6899999999999999999999999999999 9999999999999886
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-19 Score=174.33 Aligned_cols=177 Identities=17% Similarity=0.268 Sum_probs=118.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+++...++++|++-+ |.==.=+|..||+++++||||-||||++|+|+|.++ |++|+ ..+..
T Consensus 342 lv~y~~~~k~~g~F~-------L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~--- 402 (591)
T COG1245 342 LVEYPDLKKTYGDFK-------LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLK--- 402 (591)
T ss_pred eeecchheeecCceE-------EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----Cccce---
Confidence 455555666664321 222333567789999999999999999999999999 99987 23333
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
|+|-||-.. -....||.+-+.-........+ --..++++-
T Consensus 403 ------------------------------------vSyKPQyI~-~~~~gtV~~~l~~~~~~~~~~s---~~~~ei~~p 442 (591)
T COG1245 403 ------------------------------------VSYKPQYIS-PDYDGTVEDLLRSAIRSAFGSS---YFKTEIVKP 442 (591)
T ss_pred ------------------------------------Eeecceeec-CCCCCcHHHHHHHhhhhhcccc---hhHHhhcCc
Confidence 444444221 1123455554432221111111 112355555
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
++++... ..++ ..||||+.||++||-+|.+++++.+||||++ ||.+.+..+...|++..+.
T Consensus 443 l~l~~i~---e~~v--------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v 511 (591)
T COG1245 443 LNLEDLL---ERPV--------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511 (591)
T ss_pred cchHHHH---hccc--------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE
Confidence 6653221 2344 6899999999999999999999999999999 9999999999999998765
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
-+|++.+..-+.||+
T Consensus 512 VdHDi~~~dyvsDr~ 526 (591)
T COG1245 512 VDHDIYMIDYVSDRL 526 (591)
T ss_pred EecceehhhhhhceE
Confidence 466777666666653
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-20 Score=178.65 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=113.6
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|.++|+-.--|.++.+ +..++|+|++|-.+.|+||||||||+|+|+|.|+++ ...|...+= .+..+-|+
T Consensus 482 I~lenIpvItP~~~vv-----v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P-~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPAGDVL-----VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIP-RPNNIFYI 550 (728)
T ss_pred eEEecCceeccCccee-----ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecC-CCcceEec
Confidence 8888888877777665 899999999999999999999999999999999998 666654422 12235555
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
||.|.+-.+ +..+..+-..+.+++++ =||-.| ..++++..+
T Consensus 551 PQRPYms~g-tlRDQIIYPdS~e~~~~--------kg~~d~------------------------------dL~~iL~~v 591 (728)
T KOG0064|consen 551 PQRPYMSGG-TLRDQIIYPDSSEQMKR--------KGYTDQ------------------------------DLEAILDIV 591 (728)
T ss_pred cCCCccCcC-cccceeecCCcHHHHHh--------cCCCHH------------------------------HHHHHHHHh
Confidence 555433211 11111111112222221 122222 244444444
Q ss_pred CCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 232 NCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 232 ~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.++ +.....|.+.+--- - ..||||+|||+++||.+++.|+..+|||.|| ..+..+..+.++.++.
T Consensus 592 ~L~~i~qr~~g~da~~dW-k--d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 592 HLEHILQREGGWDAVRDW-K--DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA 658 (728)
T ss_pred hHHHHHHhccChhhhccH-H--hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc
Confidence 442 11111121110000 1 3699999999999999999999999999999 8888889998887764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-19 Score=173.97 Aligned_cols=191 Identities=20% Similarity=0.180 Sum_probs=112.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..+.++|+++.|.+... ++|++|++.+|+.+||+|+|||||||++++|.|-..|- |..=.++.-.++
T Consensus 74 ~dvk~~sls~s~~g~~l------~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d~y~ls~e---- 140 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVEL------IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHIDFYLLSRE---- 140 (614)
T ss_pred ccceeeeeeeccCCcee------eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---Ccccchhhhccc----
Confidence 36999999999976643 99999999999999999999999999999999999843 222111111111
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccc-ccccccccchhhHHHHHH-hhhccCCCChHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLA-VLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v-~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~~~~ 227 (317)
+.|+...-- ..--......+.+.+...+...-- .+ .. .. -.+++. .+. ..+.+....++..+
T Consensus 141 -------~~ps~~~av-~~v~~~~~~e~~rle~~~E~l~~~~d~-~~-~~----~l~~~~~r~~--~~d~~~~~~k~~~i 204 (614)
T KOG0927|consen 141 -------IEPSEKQAV-QAVVMETDHERKRLEYLAEDLAQACDD-KE-KD----ELDELYERLD--EMDNDTFEAKAAKI 204 (614)
T ss_pred -------CCCchHHHH-HHHhhhhHHHHHHHHHHHHHHHhhccc-hh-hh----HHHHHHHHHH--hhCchhHHHHHHHH
Confidence 000000000 000001222233322222222110 11 00 00 011111 011 11122233445555
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+.-++.... .. ...+ ..||||++.|+++||+|..+|.+|+|||||+ ||..+..-+-+.|.++
T Consensus 205 l~glgf~~~-m~-~k~~--------~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~ 267 (614)
T KOG0927|consen 205 LHGLGFLSE-MQ-DKKV--------KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY 267 (614)
T ss_pred HHhcCCCHh-HH-HHHh--------hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc
Confidence 555554211 11 2334 7999999999999999999999999999999 9999988776666554
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=166.93 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=150.4
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+.++++||+..-..+... +++|||+|.+||++||.|-.|-|-+-|+.+|+|+.+ |.+|+|.++|++
T Consensus 254 g~~vL~V~~L~v~~~~~~~~-----v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~-- 321 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTA-----VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKD-- 321 (501)
T ss_pred CCeEEEEeeeEeecCCCCce-----eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEe--
Confidence 35689999999877544333 999999999999999999999999999999999998 888999999987
Q ss_pred eeeEecccCCCCcccccceee-ccCChHHHHHHHHHhhhhccccccccc--cccchhhHHHHHHhhhccC----CC----
Q 021147 148 GTYFLQEYTIPRGVRHGELVI-RRSDSSSLRNRMRCKAHKIGCEPSVIR--KVNFVIFVVDGLAVLKSME----GD---- 216 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ig~v~Q~~~--~~~~~~tv~eni~~~~~~~----~~---- 216 (317)
+ ..+++..+++. .++|+|.|.. -+-..+|+++|+.+..... ..
T Consensus 322 --------------------v~~~~~~~~~r~~------G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~ 375 (501)
T COG3845 322 --------------------VLGRLSPRERRRL------GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD 375 (501)
T ss_pred --------------------ccccCCHHHHHhc------CCccCChhhccCccccCccHHHHhhhhhccccccccccccC
Confidence 3 34566555543 4999999874 2334579999998754321 11
Q ss_pred ChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH
Q 021147 217 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM 295 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~ 295 (317)
.+...+...++.+.+.+- .-....++ .+||||.+||+-+||-+..+|++||..+||- ||..+.+.+.+.
T Consensus 376 ~~~i~~~a~~li~~fdVr--~~~~~~~a--------~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~ 445 (501)
T COG3845 376 RRAIRKFARELIEEFDVR--APSPDAPA--------RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445 (501)
T ss_pred HHHHHHHHHHHHHHcCcc--CCCCCcch--------hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHH
Confidence 122334445556665541 00112233 7999999999999999999999999999999 999999999999
Q ss_pred HHHHHHh------cCCCcchhhcccCCC
Q 021147 296 LRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 296 l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|.+.... -+.++.-+-.++||+
T Consensus 446 l~e~r~~G~AVLLiS~dLDEil~lsDrI 473 (501)
T COG3845 446 LLELRDAGKAVLLISEDLDEILELSDRI 473 (501)
T ss_pred HHHHHhcCCEEEEEehhHHHHHHhhhee
Confidence 9887543 223355555555553
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-19 Score=162.51 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=94.5
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHh----hcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~----Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
.++++.+| +++|+||||||||||+++|. |... |..|.+..+... +..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~----------------------i~~- 66 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKL----------------------IRE- 66 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHH----------------------HhC-
Confidence 34566677 99999999999999999995 7777 666665511110 000
Q ss_pred ChHHHHHHHHHhhhhccccccccc----cccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIR----KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 247 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~----~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~ 247 (317)
. . ....|++++|++. .....+++++|+.+.. +.++.+.+ ....
T Consensus 67 ~--~-------~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~---------~~~~~~~~------------~~~~--- 113 (204)
T cd03240 67 G--E-------VRAQVKLAFENANGKKYTITRSLAILENVIFCH---------QGESNWPL------------LDMR--- 113 (204)
T ss_pred C--C-------CcEEEEEEEEeCCCCEEEEEEEhhHhhceeeec---------hHHHHHHH------------hcCc---
Confidence 0 0 0112677766651 1122347778775431 11122222 1122
Q ss_pred eccchhcCcHHHHHh------hcccceeccccceeeccCCCC-CCHHHHH-HHHHHHHHHHH
Q 021147 248 THGDLLSLTDRARIR------TYLGELLGIPPAKQIFDIPES-SDPENEL-IIVDMLRYCLE 301 (317)
Q Consensus 248 ~hg~~~~LSgG~~qR------l~iaral~~~p~ilIlDEPts-LD~~t~~-~l~~~l~~l~~ 301 (317)
..||+||+|| +++||++..+|++++||||++ ||+.+.. .+.+.++++.+
T Consensus 114 -----~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~ 170 (204)
T cd03240 114 -----GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170 (204)
T ss_pred -----cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 6899999996 789999999999999999999 9999999 99999988754
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-19 Score=170.81 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=106.4
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..|.+.+++..|+++. . |++-++++..|..+||||+||||||||+|+|+.-.- ..-|..-++.=+....
T Consensus 79 ~Di~~~~fdLa~G~k~-L-----L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~--- 147 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKI-L-----LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEA--- 147 (582)
T ss_pred cceeeeeeeeeecchh-h-----hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHH---
Confidence 3689999999998664 3 999999999999999999999999999999987110 0112222222111000
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH-HH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI-VA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~-~a 228 (317)
.....+.+..+ .-++.++..+.. .. ...++.. ++
T Consensus 148 -----------------~~~~l~~D~~~---------~dfl~~e~~l~~----------------~~---~l~ei~~~~L 182 (582)
T KOG0062|consen 148 -----------------LQSVLESDTER---------LDFLAEEKELLA----------------GL---TLEEIYDKIL 182 (582)
T ss_pred -----------------HhhhhhccHHH---------HHHHHhhhhhhc----------------cc---hHHHHHHHHH
Confidence 00011111111 111111111000 00 1122333 66
Q ss_pred HHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 229 TTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 229 ~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.-+|.. ... ..++ .+||||=|.|+++|||+..+|++|+|||||+ ||..+-.-+.+.|..+
T Consensus 183 ~glGFt~emq---~~pt--------~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~ 244 (582)
T KOG0062|consen 183 AGLGFTPEMQ---LQPT--------KSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW 244 (582)
T ss_pred HhCCCCHHHH---hccc--------cccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC
Confidence 677763 222 4667 8999999999999999999999999999999 9999988888877765
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-18 Score=180.32 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=73.9
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---ceee
Q 021147 201 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQI 277 (317)
Q Consensus 201 ~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~ilI 277 (317)
+|+.+++.|...... ..++.++++.+++....+ +..+ ..|||||+||+++|++|+.+| +++|
T Consensus 792 ltv~E~l~~f~~~~~-----i~~~l~~L~~vgL~~l~l--~~~~--------~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 792 MTVEEALEFFEAIPK-----IARKLQTLVDVGLGYIKL--GQPA--------TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred CcHHHHHHHHHhchh-----hhHHHHHHHHCCCCcccc--cCCc--------ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 578888877643221 223567788888742111 3444 689999999999999999999 9999
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCC
Q 021147 278 FDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 278 lDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
||||++ ||+.+...+.+.|+++.+. ..|++..+. .+|+
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ 901 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADW 901 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCE
Confidence 999999 9999999999999998642 345555543 3554
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-18 Score=150.48 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=134.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
...|++.++.|+|+...++ +-|+|++++.|....+||.||||||||+|+|+|=.- ...|.|.+.|++.
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~Vlgrsa-- 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSA-- 78 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCc--
Confidence 3469999999999877766 899999999999999999999999999999999876 6679999999851
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|.+-.+- .-+.+.+ +. .+|.+. +++--..| +...+++..-|. +- .... .+++..+.
T Consensus 79 ---FhDt~l~---~Sgdl~Y--LG-geW~~~-------~~~agevp--lq~D~sae~mif-gV--~g~d---p~Rre~LI 134 (291)
T KOG2355|consen 79 ---FHDTSLE---SSGDLSY--LG-GEWSKT-------VGIAGEVP--LQGDISAEHMIF-GV--GGDD---PERREKLI 134 (291)
T ss_pred ---ccccccc---ccCceeE--ec-cccccc-------cccccccc--ccccccHHHHHh-hc--cCCC---hhHhhhhh
Confidence 0000000 0000000 00 011111 22211111 111234433332 11 1111 24466777
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCc
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNL 307 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~ 307 (317)
+.+.+... -.. ..+|+|||.|+.|+.-|++.=++|+|||-|- ||...+..+.+.+++-++.-..-+
T Consensus 135 ~iLDIdl~-----WRm--------HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatI 201 (291)
T KOG2355|consen 135 DILDIDLR-----WRM--------HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATI 201 (291)
T ss_pred hheeccce-----EEE--------eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEE
Confidence 77776422 122 4799999999999999999999999999999 999999999999999887766666
Q ss_pred chhhcccC
Q 021147 308 SCKSCARN 315 (317)
Q Consensus 308 ~~~~~~~~ 315 (317)
-++.+..|
T Consensus 202 VYATHIFD 209 (291)
T KOG2355|consen 202 VYATHIFD 209 (291)
T ss_pred EEEeeecc
Confidence 66666655
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-18 Score=185.98 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred hhhHHHHHHhhhc----cCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec---cc
Q 021147 200 VIFVVDGLAVLKS----MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG---IP 272 (317)
Q Consensus 200 ~~tv~eni~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~---~~ 272 (317)
..||.|++.+.-. +........+++ ++++.+++... ..+.+. .+|||||+||++|||+|+ .+
T Consensus 762 ~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l--~l~q~~--------~tLSGGE~QRV~LAraL~~~~~~ 830 (1809)
T PRK00635 762 GKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYL--PLGRPL--------SSLSGGEIQRLKLAYELLAPSKK 830 (1809)
T ss_pred CCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcch--hhcCcc--------ccCCHHHHHHHHHHHHHhhcCCC
Confidence 3578888876422 111122223333 56777776321 113344 689999999999999997 69
Q ss_pred cceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 273 PAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 273 p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|+++||||||+ ||+.+...+.+.|+++.+. ..|++..+ ..+|+|
T Consensus 831 P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrV 881 (1809)
T PRK00635 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYV 881 (1809)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEE
Confidence 99999999999 9999999999999998643 45566655 556653
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-18 Score=165.15 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCceEEEeEEEEcCCCC-ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~-~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+.|++.+|+|.|+.+. .+ +.++++++.--+.+++||+||+||||++|++.|-.. |.+|.+.+.++. +
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~-----~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r~-r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQW-----RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPRL-R 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhh-----hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecccc-e
Confidence 46799999999997766 45 999999999999999999999999999999999998 899988877652 4
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
++|.+|+.. +.+. +.+..--.+...++.. .++.+...
T Consensus 429 i~~f~Qhhv-----------------d~l~-----------------------~~v~~vd~~~~~~pG~---~~ee~r~h 465 (582)
T KOG0062|consen 429 IKYFAQHHV-----------------DFLD-----------------------KNVNAVDFMEKSFPGK---TEEEIRRH 465 (582)
T ss_pred ecchhHhhh-----------------hHHH-----------------------HHhHHHHHHHHhCCCC---CHHHHHHH
Confidence 555555320 0011 0111100111233333 34457777
Q ss_pred HHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---h
Q 021147 228 ATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---H 302 (317)
Q Consensus 228 a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~ 302 (317)
+..+|++ ... -+++ ..||||||.|+++|.+...+|-++||||||+ ||..+-..+..+|+..-- -
T Consensus 466 l~~~Gl~g~la---~~si--------~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~ 534 (582)
T KOG0062|consen 466 LGSFGLSGELA---LQSI--------ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVL 534 (582)
T ss_pred HHhcCCCchhh---hccc--------cccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEE
Confidence 8888884 222 1223 6799999999999999999999999999999 999999999998887521 1
Q ss_pred cCCCcchhhcccCC
Q 021147 303 ADRNLSCKSCARNK 316 (317)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (317)
-+|+.++++.+|+.
T Consensus 535 VSHd~~fi~~~c~E 548 (582)
T KOG0062|consen 535 VSHDEEFISSLCKE 548 (582)
T ss_pred EECcHHHHhhcCce
Confidence 45566666666653
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-18 Score=157.09 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=45.4
Q ss_pred hcCcHHHHHhhcccceeccc----cceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIP----PAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~----p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||+||+||+++||+++.+ |+++|||||++ ||+.+...+.+.|+++.+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~ 207 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG 207 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc
Confidence 68999999999999999864 89999999999 999999999999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=172.39 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=74.0
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc---cccee
Q 021147 200 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI---PPAKQ 276 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~---~p~il 276 (317)
.+||.|.+.|...... ..+..++++.+++....+ +.++ .+|||||+||+++|++|.. +|+++
T Consensus 789 ~~tv~e~~~f~~~~~~-----i~~~l~~L~~~gL~~l~l--~~~~--------~tLSgGe~QRl~LA~aL~~~~~~p~ll 853 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS-----ISRKLQTLCDVGLGYIKL--GQPA--------TTLSGGEAQRIKLAKELSKRSTGRTLY 853 (924)
T ss_pred CCcHHHHHHHHHhccc-----hhHHHHHHHHcCCCchhh--cCcc--------ccCCHHHHHHHHHHHHHhhcCCCCCEE
Confidence 3578888777643321 123567788888732111 3444 7899999999999999997 59999
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCC
Q 021147 277 IFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNK 316 (317)
Q Consensus 277 IlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~ 316 (317)
||||||+ ||+.+...+.+.|+++.+. .+|++..+. .+|+
T Consensus 854 ILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ 899 (924)
T TIGR00630 854 ILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADY 899 (924)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 9999999 9999999999999998642 445555553 3555
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-18 Score=149.55 Aligned_cols=49 Identities=20% Similarity=0.100 Sum_probs=45.9
Q ss_pred hcCcHHHHHhhccccee----ccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELL----GIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral----~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+||+||+||+++|+|+ +.+|+++|||||++ ||+.+...+.+.|+++..
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK 161 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence 68999999999999999 68999999999999 999999999999988753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=151.30 Aligned_cols=159 Identities=12% Similarity=0.150 Sum_probs=111.1
Q ss_pred cCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCC---CCCCcCcEEEECcccCceeeEecccCCCCccccccee
Q 021147 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND---KFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELV 167 (317)
Q Consensus 91 ~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~---~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~ 167 (317)
.+|+||||+|++|++++|+|+|||||||++++|+|....- ...|++|.|.+--..
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------------------- 454 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------------------- 454 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----------------------
Confidence 3499999999999999999999999999999999985421 134889988743221
Q ss_pred eccCChHHHHHHHHHhhhhccccccccc-cccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 168 IRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~ig~v~Q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
+ -+++|.+.. -|. .-|+.+.+. ...++....++++..+|+....+- ....
T Consensus 455 ~------------------~a~iPge~Ep~f~-~~tilehl~-------s~tGD~~~AveILnraGlsDAvly-Rr~f-- 505 (593)
T COG2401 455 V------------------SALIPGEYEPEFG-EVTILEHLR-------SKTGDLNAAVEILNRAGLSDAVLY-RRKF-- 505 (593)
T ss_pred h------------------hhccCcccccccC-chhHHHHHh-------hccCchhHHHHHHHhhccchhhhh-hccH--
Confidence 0 111222110 011 123333322 112222336788888888422211 1222
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCC
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRN 306 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~ 306 (317)
.+||.||+-|..||++++.+|.+++.||-.+ ||+.|...+...|.++.+.++--
T Consensus 506 ------~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giT 560 (593)
T COG2401 506 ------SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGIT 560 (593)
T ss_pred ------hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCe
Confidence 6999999999999999999999999999999 99999999999999988665433
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-16 Score=150.04 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=112.9
Q ss_pred eEEEEcCCCCccccccCceeeee-EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecc
Q 021147 76 NKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (317)
Q Consensus 76 nls~~y~~~~~~~~~~~L~~isl-~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~ 154 (317)
++..+|+.+... | -.| ...+|+++||+|+||-||||.+|+|+|-+. |.-|+- ++.+
T Consensus 79 e~vHRYg~NgFk-----L--~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~--~~pp--------- 135 (591)
T COG1245 79 EVVHRYGVNGFK-----L--YRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRY--EDPP--------- 135 (591)
T ss_pred cceeeccCCceE-----E--ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCC--CCCC---------
Confidence 467788655432 2 223 356799999999999999999999999999 765532 1211
Q ss_pred cCCCCcccccceeeccCChHHHHHHHHHhhhh---cccccc----ccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 155 YTIPRGVRHGELVIRRSDSSSLRNRMRCKAHK---IGCEPS----VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---ig~v~Q----~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
++.. .+..+.-.++......+.+. +..-+| -|..+.+ +|.+-+.-.+. . ....++
T Consensus 136 -----~wde---Vi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG--~v~elLk~~de-----~---g~~dev 197 (591)
T COG1245 136 -----SWDE---VIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDE-----R---GKFDEV 197 (591)
T ss_pred -----CHHH---HHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc--hHHHHHHhhhh-----c---CcHHHH
Confidence 0000 01111112222222221110 111122 1111211 33333321111 0 125567
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+.+++.... +..+ .+||||+.||++||-++.++.++.+||||+| ||...+-.....++++.+.
T Consensus 198 ve~l~L~nvl---~r~v--------~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~V 266 (591)
T COG1245 198 VERLGLENVL---DRDV--------SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266 (591)
T ss_pred HHHhcchhhh---hhhh--------hhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeE
Confidence 7777763222 3455 8999999999999999999999999999999 9999999999999998753
Q ss_pred --cCCCcchhhccc
Q 021147 303 --ADRNLSCKSCAR 314 (317)
Q Consensus 303 --~~~~~~~~~~~~ 314 (317)
.+|+|..+--+.
T Consensus 267 iVVEHDLavLD~ls 280 (591)
T COG1245 267 IVVEHDLAVLDYLS 280 (591)
T ss_pred EEEechHHHHHHhh
Confidence 455555443333
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=132.85 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=40.8
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l~ 300 (317)
..+|+|++|+..+++++ .+|+++++|||++ +|+.....+.. .++++.
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~ 138 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL 138 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999885 7999999999999 99999998864 566654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=158.45 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=128.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+|.-++||+.+.++||.|||||||+++|+|-.+... -..|+|.+||.+ .++.-
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~----------------------~~e~~ 186 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHD----------------------LKEFV 186 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCc----------------------ccccc
Confidence 999999999999999999999999999999999986321 235699999986 22222
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--CC---CChHHHH----HHHHHHHHcCCCcccCCCCCC
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--EG---DSDVEKQ----YNQIVATTFNCPYLSFRDDKP 243 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--~~---~~~~~~~----~~~~~a~~~~l~~~~l~~~~~ 243 (317)
. ++. ++|.+|.-..+ +.+||++-+.|..+. +. +.....+ .+..+++.+|+ ....+
T Consensus 187 ~---~~~-------~aY~~e~DvH~-p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL-----~~~~d 250 (1391)
T KOG0065|consen 187 P---KKT-------VAYNSEQDVHF-PELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGL-----DHCAD 250 (1391)
T ss_pred c---Cce-------EEecccccccc-ceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCc-----hhhcc
Confidence 1 222 88888754334 368999999886432 21 1111111 34567888885 33567
Q ss_pred EEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 244 VVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 244 ~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++|... ....|||||.|+.+|.+++.+++++.+||+|. ||..|.-++.+.++.+...
T Consensus 251 T~VGnd~-~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~ 309 (1391)
T KOG0065|consen 251 TLVGNDM-VRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHI 309 (1391)
T ss_pred ceecccc-cccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhh
Confidence 7777651 15799999999999999999999999999999 9999999999999998654
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-15 Score=117.43 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=59.1
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
+|+++||++++|++++|+||||||||||++++. +|++.++|.+ +..+
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~d----------------------i~~~ 50 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDD----------------------NVEI 50 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEe----------------------HHHh
Confidence 399999999999999999999999999999975 4789999876 3334
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 210 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~ 210 (317)
+....++. +++++|+ +|+ .||++||.+.
T Consensus 51 ~~~~~~~~-------~~~~~q~--lf~--~ti~~Ni~~~ 78 (107)
T cd00820 51 REDSKDEL-------IGRNPEL--GLE--IRLRLNIFLI 78 (107)
T ss_pred hhhhcCCE-------EEEechh--cch--hhHHhhceee
Confidence 43333333 7788887 454 4899999863
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-14 Score=127.58 Aligned_cols=49 Identities=20% Similarity=0.058 Sum_probs=43.2
Q ss_pred hcCcHHHHHhhcccce----eccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGEL----LGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iara----l~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||+||+||+.++++ ++.+|+++|+|||++ ||+.+...+.+.+.++.+
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~ 178 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETAC 178 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhh
Confidence 6899999998876654 458999999999999 999999999999988754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-14 Score=123.59 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=44.8
Q ss_pred hcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.-||+||+||+++||+++ .+|+++|+|||++ ||+.+...+.+.+.++.+
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 349999999999999985 6999999999999 999999999999998754
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-14 Score=134.83 Aligned_cols=207 Identities=13% Similarity=0.086 Sum_probs=115.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|.++|.+.+-.+... +.+.||.|-.|..++||||||-|||||++-|+..-- .+|..=.|+++.+...
T Consensus 264 DIKiEnF~ISA~Gk~L------FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral---aIPpnIDvLlCEQEvv--- 331 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLL------FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL---AIPPNIDVLLCEQEVV--- 331 (807)
T ss_pred cceeeeeeeeccccee------eeccceEEEecceecccCCCCCchHHHHHHHHhhhc---cCCCCCceEeeeeeee---
Confidence 4899999988765543 788999999999999999999999999999876421 0133333554444310
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhh-ccCCCChHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLK-SMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~-~~~~~~~~~~~~~~~~a 228 (317)
.-....+.. +-..+.+.+. ..++-. -+..| +..+..|+.+-+. ... ...........+...++
T Consensus 332 ------ad~t~Ai~t--vl~aD~kRl~-lLeee~---~L~~q---~e~Gd~taaErl~~v~~ELraiGA~sAEarARRIL 396 (807)
T KOG0066|consen 332 ------ADSTSAIDT--VLKADKKRLA-LLEEEA---KLMSQ---IEEGDTTAAERLKEVADELRAIGADSAEARARRIL 396 (807)
T ss_pred ------ecCcHHHHH--HHHhhHHHHH-HHHHHH---HHHHH---HHcCchHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 000000000 0000110000 000000 01111 1122334444331 111 00000111122344555
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---hcC
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE---HAD 304 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~---~~~ 304 (317)
.-+|.... ....++ ..+|||-|.|+++||||+..|.+|.|||||+ ||-....-+-+.|+-+.+ ..+
T Consensus 397 AGLGFskE--MQ~rPt--------~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVS 466 (807)
T KOG0066|consen 397 AGLGFSKE--MQERPT--------TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVS 466 (807)
T ss_pred hhcCCChh--HhcCCc--------cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEe
Confidence 55555311 124566 7999999999999999999999999999999 998877777677766543 234
Q ss_pred CCcchhhccc
Q 021147 305 RNLSCKSCAR 314 (317)
Q Consensus 305 ~~~~~~~~~~ 314 (317)
|+-.++-.+|
T Consensus 467 HDQgFLD~VC 476 (807)
T KOG0066|consen 467 HDQGFLDSVC 476 (807)
T ss_pred cccchHHHHH
Confidence 4444444444
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-13 Score=120.56 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++|+. |++++|+||||||||||+|+|+|...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 77777765 69999999999999999999999764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-13 Score=124.84 Aligned_cols=49 Identities=10% Similarity=-0.105 Sum_probs=43.9
Q ss_pred chhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+..+|+||+|++++|++++ .+|+++++|||++ ||+.....+.+.+.++
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 34568999999999999975 7999999999999 9999999999998764
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-13 Score=148.08 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
.+..+.+..+|+....+ |.++ ..|||||.||+.+|.-|..+ +.++||||||. |++...+.+.+.++
T Consensus 1677 ~~~L~~L~~vGLgYl~L--Gq~~--------~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1677 QKPLQALIDNGLGYLPL--GQNL--------SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred HHHHHHHHHcCCCeeeC--CCcC--------CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 34566777788743222 6666 78999999999999999875 78999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccC
Q 021147 298 YCLEH------ADRNLSCKSCARN 315 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~ 315 (317)
++... -+|++....+ +|
T Consensus 1747 ~L~~~g~tvivieH~~~~i~~-aD 1769 (1809)
T PRK00635 1747 TLVSLGHSVIYIDHDPALLKQ-AD 1769 (1809)
T ss_pred HHHhcCCeEEEEeCCHHHHHh-CC
Confidence 98754 4555555544 44
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-13 Score=129.03 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=55.8
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------cCCCcchhhcccCCC
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~~~~~~~~~~~~~~~ 317 (317)
..||||+.||+++|-++-+.+.+.+.|||.+ ||.+.+...-..+++..-| .+|++.|+.-.+|||
T Consensus 455 q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrv 527 (592)
T KOG0063|consen 455 QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRV 527 (592)
T ss_pred hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhccee
Confidence 6899999999999999999999999999999 9999888877777777644 456677777777775
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.5e-13 Score=123.46 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=44.1
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||+||+||+++|++++. +|+++|+|||++ ||+.+...+.+.+.++.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~ 222 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR 222 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 4699999999999987553 999999999999 999999999999988743
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-13 Score=114.36 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 254 SLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 254 ~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.||+||+||+++++++.. +|+++|+|||++ +|+.....+.+.+.++..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~ 129 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 599999999999999986 789999999999 999999999999988754
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=129.83 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=68.6
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---ceee
Q 021147 201 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQI 277 (317)
Q Consensus 201 ~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~ilI 277 (317)
|||.|-..|+...+ .-.+..+.+..+|+....+ |.+. ..|||||.|||.+|.-|.+.. .+.|
T Consensus 784 MTveEA~~FF~~~p-----~I~rkLqtL~dVGLgYi~L--GQpa--------tTLSGGEaQRvKLA~EL~k~~tg~TlYi 848 (935)
T COG0178 784 MTVEEALEFFEAIP-----KIARKLQTLVDVGLGYIKL--GQPA--------TTLSGGEAQRVKLAKELSKRSTGKTLYI 848 (935)
T ss_pred ccHHHHHHHHhcch-----HHHHHHHHHHHcCcceEec--CCcc--------ccccchHHHHHHHHHHHhhccCCCeEEE
Confidence 45655555543322 1233456666677642222 5555 799999999999999999866 9999
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhh
Q 021147 278 FDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKS 311 (317)
Q Consensus 278 lDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~ 311 (317)
|||||. |-....+.+++.|.++... -+||+..+.
T Consensus 849 LDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 849 LDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 999999 9999999999999998754 345555443
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-13 Score=118.44 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=36.7
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHH-HHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDM-LRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~-l~~l~ 300 (317)
..++.+++| +..+.+...+|+++|+|||++ +|+.....+... ++.+.
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~ 138 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL 138 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 357777776 777777788999999999999 999988777554 45443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-12 Score=116.35 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=75.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
.+|+++++.++++++|.||||||||||++.+.-. .
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~-------------------------------------------- 54 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-V-------------------------------------------- 54 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-H--------------------------------------------
Confidence 8999999999999999999999999999998832 1
Q ss_pred hHHHHHHHHHhhhhcc-ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig-~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
+-.+ +| +||.+...+. + ..+++..+++. +.. .
T Consensus 55 ---~la~-------~g~~vpa~~~~~~----~--------------------~~~il~~~~l~-----d~~-~------- 87 (222)
T cd03285 55 ---LMAQ-------IGCFVPCDSADIP----I--------------------VDCILARVGAS-----DSQ-L------- 87 (222)
T ss_pred ---HHHH-------hCCCcCcccEEEe----c--------------------cceeEeeeccc-----cch-h-------
Confidence 0111 55 4554321111 0 11222223321 011 1
Q ss_pred hhcCcHHHHHhhccccee--ccccceeeccCC---CC-CCHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELL--GIPPAKQIFDIP---ES-SDPENELI 291 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral--~~~p~ilIlDEP---ts-LD~~t~~~ 291 (317)
..+|.+++++..+++++ +.+|+++||||| |+ +|+.+...
T Consensus 88 -~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~ 132 (222)
T cd03285 88 -KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW 132 (222)
T ss_pred -cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence 57899999999999999 899999999999 99 99988754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-12 Score=111.49 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=41.1
Q ss_pred HHHHhhcccceeccccceeeccCCC-----C-CCHHHHHHHHHHHHHHHH
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPE-----S-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPt-----s-LD~~t~~~l~~~l~~l~~ 301 (317)
-++++..+||+++.+|+++++|||| + ||+.+.+.+.+.++++.+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3888899999999999999999999 9 999999999999999754
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-12 Score=111.78 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=34.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|++|++++|++++|+|||||||||++|+++++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998854
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-11 Score=122.41 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=43.3
Q ss_pred CceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECccc
Q 021147 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 145 (317)
Q Consensus 92 ~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~~ 145 (317)
+|++|||++++||+++|+||||||||||++ +|+.. |++| +|.++|.+
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~ 68 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATH 68 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEE
Confidence 399999999999999999999999999999 78877 7777 79999986
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-11 Score=105.38 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=106.4
Q ss_pred CceeeEecccCCCCccccccee------eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~------~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
..+|||||+|+|||+.++-++. ..+++..+.++...++++++|+-.. .+.||.+.|+
T Consensus 77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-----------------a~~yP~qLSG 139 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-----------------ADAYPAQLSG 139 (240)
T ss_pred HhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-----------------hhhCccccCc
Confidence 4689999999999999988864 4677888888888999999997433 3568899999
Q ss_pred HHHHHHHHHHHcCC-Ccc--------c----------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 220 EKQYNQIVATTFNC-PYL--------S----------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~--------~----------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
+|+|++++|+++.+ |.. + ..+|++.+++|| |-|.+.++...- +.-|+.+..+
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviF-md~G~iie~g 218 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF-MDQGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEE-eeCCEEEEec
Confidence 99999999999998 311 0 467999999999 677788887765 8889899999
Q ss_pred cceeeccCCCCCCHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVD 294 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~ 294 (317)
++-.+|+.|.+ +.+++.+..
T Consensus 219 ~p~~~f~~p~~--~R~~~FL~~ 238 (240)
T COG1126 219 PPEEFFDNPKS--ERTRQFLSK 238 (240)
T ss_pred CHHHHhcCCCC--HHHHHHHHh
Confidence 99999999999 777776643
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=108.88 Aligned_cols=48 Identities=13% Similarity=-0.041 Sum_probs=43.4
Q ss_pred chhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
....+|.||++++.+|++++ .+|++++||||++ ||+..+..+.+.+.+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~ 327 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG 327 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc
Confidence 33579999999999999885 7999999999999 999999999998865
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-10 Score=118.22 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=39.5
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHH-HHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIV-DMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~-~~l~~l~ 300 (317)
..+|++++++..+.+.+ .+|.++|+|||++ +|+.....+. ..++.+.
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~ 432 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL 432 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999988888776 7899999999999 9999999885 5555553
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=106.93 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=42.7
Q ss_pred CCCCCCEEEEeccchhcCcHHH--------HHhhcccceeccccceeeccCCCC-CCHHHHHH
Q 021147 238 FRDDKPVVVVTHGDLLSLTDRA--------RIRTYLGELLGIPPAKQIFDIPES-SDPENELI 291 (317)
Q Consensus 238 l~~~~~~~i~~hg~~~~LSgG~--------~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~ 291 (317)
++..+..+.+.+| ..+|||+ +||+++||++.+++++.+| ||+ +|..++..
T Consensus 115 ~a~a~~ev~~~~G--~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~ 173 (249)
T cd01128 115 LARAYNTVVPPSG--KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMD 173 (249)
T ss_pred hhhhhhhccccCC--CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCccc
Confidence 5667788888888 7889999 9999999999999999999 999 99655543
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-10 Score=103.80 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=35.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..++|+||||||||||+++|+|++. |++|+|.++|++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEE
Confidence 6789999999999999999999999 999999999987
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-10 Score=101.11 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=32.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|++|++.+ ++++|+||||||||||+|+++++.-
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH
Confidence 8999999988 9999999999999999999988654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=97.97 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHH-HHHHHHHHHHHHH
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPEN-ELIIVDMLRYCLE 301 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t-~~~l~~~l~~l~~ 301 (317)
+.||++++++++.+|.++|+|||++ +|+.. ...+...++++.+
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 4467999999999999999999999 99875 4444567777654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=100.85 Aligned_cols=48 Identities=13% Similarity=-0.012 Sum_probs=44.5
Q ss_pred hhcCcHHHHHhhcccceecc---------ccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLGI---------PPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~---------~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
...+|.||++++.+|.+++. .|++++||||++ ||+..+..+.+.+...
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~ 330 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL 330 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc
Confidence 45799999999999999999 999999999999 9999999999998654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=102.58 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=52.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++-++++..|..+..+ ++. .|.+.+|+.++|+|+||+|||||+++|++..+ |+.|.|.+.|++
T Consensus 130 ~~~r~~i~~~l~TGira-----ID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETGIKS-----IDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCCCEE-----Eec-cceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCC
Confidence 46667777777654433 776 49999999999999999999999999999998 888888766653
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=98.08 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=42.7
Q ss_pred hhcCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
..-+|+||++++.+|..++ ..|++++||||++ ||+.....+.+.+..
T Consensus 261 ~~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 261 HRYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred HHhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 3568999999999999998 8999999999999 999999999888754
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-09 Score=102.28 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHccccccccC---CCCceEEEeEEEEcCCCCccccccCce-----------eeeeEecCCCEEEEEcCC
Q 021147 47 QRRRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPK 112 (317)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~---~~~~I~~~nls~~y~~~~~~~~~~~L~-----------~isl~I~~Ge~vaIvG~S 112 (317)
...+..|++++++..+..... ....++|+||++.|++...+ |+ |+++.|.+|+.++|+||+
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~-----Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~ 177 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLR-----LETSTEDLSTRVLDLFAPIGKGQRGLIVAPP 177 (415)
T ss_pred ccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccce-----eecCccccceeeeeeEEEeCCCCEEEEECCC
Confidence 345677888988876543222 23569999999999876544 86 999999999999999999
Q ss_pred CChHHHHHHHHhhccc
Q 021147 113 GSGKSSLVNRISKVFE 128 (317)
Q Consensus 113 GsGKSTLlklL~Gl~~ 128 (317)
|||||||+++|+..+.
T Consensus 178 g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 178 KAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCChhHHHHHHHHhhc
Confidence 9999999999999876
|
Members of this family differ in the specificity of RNA binding. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.87 E-value=6e-10 Score=97.94 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=33.8
Q ss_pred hcCcHHHHHhhcccceecc--ccceeeccCCCC-CCHHHHHHHH-HHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI--PPAKQIFDIPES-SDPENELIIV-DMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~--~p~ilIlDEPts-LD~~t~~~l~-~~l~~l~ 300 (317)
..+|++++| +++++.. +|+++|+|||++ +|+.....+. ..++.+.
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~ 108 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL 108 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 578988887 4455544 999999999999 9999777764 4455544
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=90.90 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=37.4
Q ss_pred cCcHHHHHhhccccee----ccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 254 SLTDRARIRTYLGELL----GIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 254 ~LSgG~~qRl~iaral----~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.|||||+-++++|-.+ ....+++||||+.+ ||+.....+.++|+++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~ 187 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS 187 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999998887544 35788999999999 99999999999999864
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.5e-09 Score=113.27 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=54.2
Q ss_pred hcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 253 LSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++||++|..+| +++||||||+ ||+.....+.+.|+++.+. .+|++..+. .+|+|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~v 560 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYI 560 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEE
Confidence 799999999999999999997 9999999999 9999999999999998653 445555543 35653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-09 Score=112.27 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=54.8
Q ss_pred hcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 253 LSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+|||||+||++||++|..+| .++||||||+ ||+.....+.+.|+++.+. .+|+...+. .+|+|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~v 558 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYV 558 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEE
Confidence 799999999999999999986 8999999999 9999999999999998653 356665554 56654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-09 Score=101.93 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
-+.++.++++..|..+..+ ++.++ .|.+|++++|+|+||||||||+++|+++.. |+.|.|.+.|.
T Consensus 137 p~~~~r~~v~~~l~TGi~a-----ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRV-----IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcCCCcEE-----eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeeccc
Confidence 3568999999999766444 87785 999999999999999999999999999999 88999988653
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-09 Score=104.53 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||||+.||.++|.+.....++.+||||.+ ||...+......|+.+..
T Consensus 212 ~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~ 261 (592)
T KOG0063|consen 212 EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN 261 (592)
T ss_pred hhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC
Confidence 6899999999999999999999999999999 999999998888888764
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=90.85 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh-cccCCCCCCcCcEEEE
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTY 141 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G-l~~p~~~~p~~G~I~i 141 (317)
.+|++|++.+|++++|+||||+||||+++++++ .+. ++.|...+
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~ 65 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVP 65 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEE
Confidence 899999999999999999999999999999999 555 77776553
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=89.35 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=31.8
Q ss_pred EecCCCEEEEEcCCCChHHHH-HHHHhhcccCCCCCCcCcEEEEC
Q 021147 99 DVPKTTSLLLIGPKGSGKSSL-VNRISKVFENDKFASERAQVTYN 142 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTL-lklL~Gl~~p~~~~p~~G~I~i~ 142 (317)
-+++|+++.|+|+|||||||| +++++++.+ +....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEe
Confidence 368899999999999999999 699999887 544445543
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-08 Score=97.15 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=44.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++ |.+.+|++++|+|+||+|||||+++|+|+++ |+.|.|.+.|++
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Ger 195 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGER 195 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecC
Confidence 9999 9999999999999999999999999999999 899999987764
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-08 Score=98.56 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=34.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+++ |+|.+|++++|+|+||||||||+++|+|+++
T Consensus 146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 146 INGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred ccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 9999 9999999999999999999999999999998
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-08 Score=88.23 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=42.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.+-+.+.+++|+.++|+||||||||||+++|+|+++ |+.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCc
Confidence 444778899999999999999999999999999999 88999998764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-08 Score=95.73 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=33.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++.++.+.+|.+++|||||||||||++..|++.+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 667778888999999999999999999999999987
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=80.82 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=40.5
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
...|.|+-. +++-.-=..+.-+.|||||.+ |.|.-+-.+...|+++.+.
T Consensus 128 h~~SHGEsf-~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~s 177 (233)
T COG3910 128 HHMSHGESF-LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADS 177 (233)
T ss_pred hhhccchHH-HHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhc
Confidence 578999987 665555567888999999999 9999999999999987543
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=99.33 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=40.2
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHH-HHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVD-MLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~-~l~~l~ 300 (317)
..+|++++++..+++++ .+|.++|+|||++ +|+.....+.. .+..+.
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR 437 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999988 7999999999999 99998888765 455543
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-07 Score=80.43 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+|++++|+|+||||||||+++|++++. + +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcc
Confidence 689999999999999999999999988 5 4777764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.7e-08 Score=89.89 Aligned_cols=133 Identities=17% Similarity=0.292 Sum_probs=104.7
Q ss_pred ceeeEeccc--CCCCcccccceee-----c-cC-ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC
Q 021147 147 DGTYFLQEY--TIPRGVRHGELVI-----R-RS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 217 (317)
Q Consensus 147 ~~~~~~Q~~--~l~~~~~~~~~~~-----~-~~-~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~ 217 (317)
.++||||++ .|+|.++++.... + .. ..++.++++.++++.+|+-..+ ...+.|+.+.
T Consensus 89 ~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------------~~~~~YPhel 154 (316)
T COG0444 89 EIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------------RRLKSYPHEL 154 (316)
T ss_pred eEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------------HHHhhCCccc
Confidence 589999986 5899999997542 1 12 3445667778888888863221 1246789999
Q ss_pred hHHHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEec--cchhcCcHHHHHhhccccee
Q 021147 218 DVEKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELL 269 (317)
Q Consensus 218 ~~~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral 269 (317)
|+++.|++.+|.++.+ |... ...+..++++|| |.+.++|+...+ +.-|+.+
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V-MYaG~iV 233 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV-MYAGRIV 233 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE-EECcEEE
Confidence 9999999999888877 3110 346899999999 688999999999 9999999
Q ss_pred ccccceeeccCCCCCCHHHHHHHHHHH
Q 021147 270 GIPPAKQIFDIPESSDPENELIIVDML 296 (317)
Q Consensus 270 ~~~p~ilIlDEPtsLD~~t~~~l~~~l 296 (317)
..+|...||.+|.+ |||+.++...-
T Consensus 234 E~g~~~~i~~~P~H--PYT~~Ll~s~P 258 (316)
T COG0444 234 EEGPVEEIFKNPKH--PYTRGLLNSLP 258 (316)
T ss_pred EeCCHHHHhcCCCC--hHHHHHHHhCc
Confidence 99999999999999 99998876553
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-07 Score=105.85 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=66.6
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHH------hhcccceecc
Q 021147 200 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARI------RTYLGELLGI 271 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~q------Rl~iaral~~ 271 (317)
..|+.+||.+ .+... .. ..+++..+.. +..++.| .+.+...| .||+||+| |+++||+++.
T Consensus 1155 ~~~~~~~i~~-~~~~~--~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~lS~Gq~~~~~~~~rlala~~~~~ 1222 (1311)
T TIGR00606 1155 RGQDIEYIEI-RSDAD--EN-----VSASDKRRNYNYRVVMLKG-DTALDMRG---RCSAGQKVLASLIIRLALAETFCL 1222 (1311)
T ss_pred CccHHHHhhc-CCCCC--hH-----HHHHHHcCchHHHhccCCC-CeecCCCC---CCchhhhhHhhHhHHHHHHHHHhc
Confidence 3589999997 43221 11 3555555542 2234555 55554444 89999999 9999999999
Q ss_pred ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 272 PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 272 ~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+|++++|||||+ ||+.+...+...|..+.
T Consensus 1223 ~~~il~lDEPt~~lD~~~~~~l~~~l~~~~ 1252 (1311)
T TIGR00606 1223 NCGIIALDEPTTNLDRENIESLAHALVEII 1252 (1311)
T ss_pred CCCEEEeeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999888874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=81.82 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|+||||||||++.|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999984
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-07 Score=87.83 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=108.3
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
..++||+||+|+|..+.++.++. +.+++..+..+++.++++.+|+-. ..+.|+.+.|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d-----------------k~~~yP~qLSG 144 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD-----------------KADRYPAQLSG 144 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh-----------------hhccCchhcCc
Confidence 35799999999999877777643 567888899999999999988631 13568889999
Q ss_pred HHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~ 271 (317)
+|+|++.+|+++.. |... ...|.+++++|| ..+.++|..... |.-|+.+..
T Consensus 145 GQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVav-m~~G~lvE~ 223 (339)
T COG1135 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAV-LDQGRLVEE 223 (339)
T ss_pred chhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheE-eeCCEEEEe
Confidence 99999999999987 3110 356899999999 577889999988 999999999
Q ss_pred ccceeeccCCCCCCHHHHHHHHHHH
Q 021147 272 PPAKQIFDIPESSDPENELIIVDML 296 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~~l~~~l 296 (317)
++-.-+|-.|.+ +.+++.+.+..
T Consensus 224 G~v~~vF~~Pk~--~~t~~fi~~~~ 246 (339)
T COG1135 224 GTVSEVFANPKH--AITQEFIGETL 246 (339)
T ss_pred ccHHHhhcCcch--HHHHHHHHhhc
Confidence 999999999998 78887776554
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=81.53 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=94.9
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCCh
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSD 218 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~ 218 (317)
.+++|||||.++-|| +++.++. +.+...+.+...++..++..+ +|+.+. -+...+..++
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~Aa--------------LWdEVKDrL~~sa~~LS 151 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA--------------LWDEVKDRLHKSALGLS 151 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhH--------------hHHHhHHHhhCCccCCC
Confidence 467999999998887 5665543 333333555555554444433 344442 2334556689
Q ss_pred HHHHHHHHHHHHcCC-Ccc-----------------------cCCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 219 VEKQYNQIVATTFNC-PYL-----------------------SFRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l-~~~-----------------------~l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|+|+..+|+++.+ |.. .+.+.|+++|+|| .+|.+.|+...- +..|+.+..+
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taF-f~~G~LvE~g 230 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAF-FYLGELVEFG 230 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhh-hcccEEEEEc
Confidence 999999999999988 311 1677899999999 488999999988 8999999999
Q ss_pred cceeeccCCCCCCHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELII 292 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l 292 (317)
+.--||..|.. ..|+..+
T Consensus 231 ~T~~iF~~P~~--~~TedYi 248 (253)
T COG1117 231 PTDKIFTNPKH--KRTEDYI 248 (253)
T ss_pred CHHhhhcCccH--HHHHHHh
Confidence 99999999988 6666654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-07 Score=88.28 Aligned_cols=130 Identities=17% Similarity=0.263 Sum_probs=100.0
Q ss_pred CcEEEECcc-----cCceeeEecccCCCCcccccceeecc-------CChHHHHHHHHHhhhhccccccccccccchhhH
Q 021147 136 RAQVTYNSS-----VGDGTYFLQEYTIPRGVRHGELVIRR-------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 203 (317)
Q Consensus 136 ~G~I~i~g~-----~~~~~~~~Q~~~l~~~~~~~~~~~~~-------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv 203 (317)
.|++++|-. ++++|++||+|.||+++++.++.-.+ .+..+.+.++.++++.+.+
T Consensus 62 ~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL-------------- 127 (345)
T COG1118 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL-------------- 127 (345)
T ss_pred CCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc--------------
Confidence 466666654 57899999999999999999865222 2334666676666554432
Q ss_pred HHHHHhhhccCCCChHHHHHHHHHHHHcCC-Ccc-c------------------------CCCCCCEEEEecc--chhcC
Q 021147 204 VDGLAVLKSMEGDSDVEKQYNQIVATTFNC-PYL-S------------------------FRDDKPVVVVTHG--DLLSL 255 (317)
Q Consensus 204 ~eni~~~~~~~~~~~~~~~~~~~~a~~~~l-~~~-~------------------------l~~~~~~~i~~hg--~~~~L 255 (317)
+ -+++.|+.+.+++|+|++++|+++.. |.. . ...+.+++++||+ ++.++
T Consensus 128 -~--~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l 204 (345)
T COG1118 128 -E--GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204 (345)
T ss_pred -c--chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh
Confidence 1 13567899999999999999999988 311 0 2348999999995 78899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES 283 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts 283 (317)
++..-. +.-|++-.-+|+..|+|.|.+
T Consensus 205 adrvvv-l~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 205 ADRVVV-LNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred cceEEE-ecCCeeeeeCCHHHHhcCCCc
Confidence 998876 999999999999999999998
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-07 Score=81.61 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999987
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=89.35 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=96.9
Q ss_pred cCceeeEecccCCCCccccccee---ec---cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV---IR---RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~---~~---~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~ 218 (317)
.+.++||||+|.|||++++.++. ++ .....++++++.+.++.+++-. +...++.+.+
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------------~~~R~p~qLS 138 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------------FADRKPHQLS 138 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------------hhhhChhhhC
Confidence 36799999999999999999874 22 1233457778888777777421 3467788899
Q ss_pred HHHHHHHHHHHHcCC-Ccc-c------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceec
Q 021147 219 VEKQYNQIVATTFNC-PYL-S------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l-~~~-~------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~ 270 (317)
++++|++++|+++.. |.. . ...|.+++++|| .+|..+|+..-. +.-++..-
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V-m~~G~I~Q 217 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV-MNDGRIEQ 217 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE-ccCCceee
Confidence 999999999999877 311 0 355899999999 488999999988 99999999
Q ss_pred cccceeeccCCCC
Q 021147 271 IPPAKQIFDIPES 283 (317)
Q Consensus 271 ~~p~ilIlDEPts 283 (317)
.+++..|++.|.+
T Consensus 218 ~gtP~eiY~~P~~ 230 (352)
T COG3842 218 VGTPEEIYERPAT 230 (352)
T ss_pred cCCHHHHhhCcch
Confidence 9999999999987
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-07 Score=81.41 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999975
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.3e-07 Score=89.90 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |++.+|+.++|+|+||||||||+++|+|+.++ .+.|.|.+.|.
T Consensus 155 ID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGe 201 (442)
T PRK06315 155 IDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGE 201 (442)
T ss_pred Eecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECC
Confidence 8887 99999999999999999999999999999851 34467776553
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-07 Score=78.52 Aligned_cols=47 Identities=19% Similarity=0.035 Sum_probs=33.2
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l~ 300 (317)
..+|++++.++.+.+....+|+++++|||..++..+ ..+.+.+.++.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~ 123 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS-PKFVKAVEEVL 123 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HHHHHHHHHHH
Confidence 479999999999898888999999999953332222 22344444444
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-07 Score=82.00 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.7
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++++|+|+||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999987
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-07 Score=81.17 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+|++|++++|++++|.||||+||||+++.+.+..-
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~ 55 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVI 55 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHH
Confidence 899999999999999999999999999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.7e-07 Score=89.40 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=54.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.++.++++..|..+..+ ++++ |+|.+|+.++|+|+||+|||||+++|+++.. ++.|.+.+.|.
T Consensus 129 ~~~r~~v~~~l~tGi~a-----ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLMTGIRA-----IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeCCCcee-----eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECC
Confidence 46777788777555444 9999 9999999999999999999999999999998 88888877775
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.2e-07 Score=64.66 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.7
Q ss_pred ceeeeeEecC-CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~-Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.++++.+ |.++.|.|+||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556778876 57999999999999999999988876
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-07 Score=88.34 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=43.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC---cEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~---G~I~i~g~~ 145 (317)
++++ |++.+||+++|+|+||||||||+++|++... ++. |.|..+|++
T Consensus 142 id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 142 IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGRE 191 (428)
T ss_pred Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCcc
Confidence 9999 9999999999999999999999999999988 665 888888874
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.5e-07 Score=84.37 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=42.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |.+.+|++++|+|+||||||||+++|+|... |+.|.+..-|.
T Consensus 60 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGe 105 (326)
T cd01136 60 IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGE 105 (326)
T ss_pred Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEec
Confidence 8999 9999999999999999999999999999999 88888877664
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-07 Score=87.93 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=41.9
Q ss_pred ceeeeeEe---cCCCE-----EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I---~~Ge~-----vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++.+ ++|+. +||+|+||||||||++.|.+++.+.. ...|.|.+||..
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfY 140 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcc
Confidence 88899888 67887 99999999999999999999998210 135788888864
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.2e-07 Score=90.29 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=53.6
Q ss_pred EEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 74 ~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++|++..|+... + ++++++.+..|+.++|+|+||||||||++.|.|+++ |.+|++.++...
T Consensus 187 ~~d~~~v~Gq~~-~-----~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIGQEQ-G-----KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAA 247 (506)
T ss_pred ccCeEEEECcHH-H-----HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecch
Confidence 458888886543 3 889999999999999999999999999999999999 999998887753
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.4e-07 Score=86.28 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=43.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+.-.+++|++++|+|+||+|||||++.|.|... +..|+|.+++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~ 231 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDS 231 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCC
Confidence 666777889999999999999999999999999999 99999998764
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-06 Score=85.81 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=43.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |++.+|++++|+|+||+|||||+++|+++.. ++.|.|.+.|.
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGe 199 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGE 199 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEcc
Confidence 9999 9999999999999999999999999999998 88899988885
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-06 Score=85.56 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=41.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC---cEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~---G~I~i~g~~ 145 (317)
++.+ |++.+|++++|+|+||||||||+++|+|+.+ |+. |.|.++|++
T Consensus 166 ID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~e 215 (455)
T PRK07960 166 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGRE 215 (455)
T ss_pred eeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeE
Confidence 4333 9999999999999999999999999999998 664 888888874
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.8e-06 Score=64.91 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++..+.|+||+||||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999987
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-06 Score=72.15 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=36.0
Q ss_pred hcCcHHHHH------hhcccceeccccceeeccCCCC-CC---HHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARI------RTYLGELLGIPPAKQIFDIPES-SD---PENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~q------Rl~iaral~~~p~ilIlDEPts-LD---~~t~~~l~~~l~~l~~ 301 (317)
..+|+|++| ......+...+|+++|+|+|++ +| ......+.+.++.+.+
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR 128 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH
Confidence 467888876 3334444567999999999999 98 7777777777776643
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=69.05 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=28.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
+++|.|+|||||||+++.+++... +..+.|.+-+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEE
Confidence 378999999999999999999987 6666666433
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-06 Score=84.39 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=44.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|.+
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger 174 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGER 174 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccc
Confidence 8999 9999999999999999999999999999998 888988888764
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-06 Score=83.11 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=90.9
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
+++++||||+|.|||++++.++. +.+.+..++++++.++.+.+++- .+++..+...++
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-----------------~lL~r~P~~LSG 136 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-----------------HLLNRKPLQLSG 136 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-----------------hHHhcCcccCCh
Confidence 47899999999999999999865 34456677777777666655531 124667888999
Q ss_pred HHHHHHHHHHHcCC-Ccc-------------------------cCCCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYL-------------------------SFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~-------------------------~l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++++++-. |.. ....+.+++.+||+ +|..|++..-. +.-++..-.
T Consensus 137 GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V-m~~G~i~Q~ 215 (338)
T COG3839 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV-MNDGRIQQV 215 (338)
T ss_pred hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE-EeCCeeeec
Confidence 99999999998765 210 02347899999996 56666666655 556888889
Q ss_pred ccceeeccCCCC
Q 021147 272 PPAKQIFDIPES 283 (317)
Q Consensus 272 ~p~ilIlDEPts 283 (317)
+.+..|+++|.+
T Consensus 216 g~p~ely~~P~n 227 (338)
T COG3839 216 GTPLELYERPAN 227 (338)
T ss_pred CChHHHhhCccc
Confidence 999999999987
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-06 Score=82.90 Aligned_cols=43 Identities=14% Similarity=0.367 Sum_probs=38.7
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
+++.++.|+.++|+|++|||||||+++|+++++ +..|.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEcC
Confidence 457788999999999999999999999999998 8888888764
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=78.80 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I 139 (317)
..++||+|+||||||||++.|+++++ +..|.+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 46899999999999999999999999 888873
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=74.69 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
-+++|.++.|.|++|||||||+..++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999998774
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-06 Score=83.03 Aligned_cols=55 Identities=25% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCC-------EEEEEcCCCChHHHHHHHHhhcc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge-------~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..+.+++++++|+|+..... ++.++|++++|+ .++|+|.+|+|||||++.|.|-.
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGS-----TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCCCCccc-----ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45679999999999855443 999999999999 99999999999999999998753
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-06 Score=84.65 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=42.6
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
|.+|++.+|+.++|+|+||||||||+++|+++.+ |+.|.|.+.|..
T Consensus 132 D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer 177 (418)
T TIGR03498 132 DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGER 177 (418)
T ss_pred eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeee
Confidence 4799999999999999999999999999999999 889998888763
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=72.36 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999976
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-06 Score=84.52 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=42.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |.+.+|++++|+|+||||||||+++|++... |+.|.+...|.
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~ 181 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGE 181 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEcc
Confidence 9999 9999999999999999999999999999998 88888877554
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-06 Score=85.10 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=41.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++++ |.|.+|++++|+|+||||||||+++|++..+ ++.|.+...|.
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~ 199 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGE 199 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEee
Confidence 8888 9999999999999999999999999999998 88877776554
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-06 Score=78.10 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=89.7
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+++||+-|...|||++++.++. +.+|+.+..++++.+++..+|+-|. .|..+||.+.|+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------------~~~~RyP~eLSG 138 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------------EYADRYPHELSG 138 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------------HHhhcCchhcCc
Confidence 36799999999999999999864 5789999999999999999997553 245789999999
Q ss_pred HHHHHHHHHHHcCC-C-ccc------------------------CCCCCCEEEEeccchhcCcHHHHHhhcccceecccc
Q 021147 220 EKQYNQIVATTFNC-P-YLS------------------------FRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP 273 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~-~~~------------------------l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p 273 (317)
+++|++-+++++.. | +.. ...+++++++||+ .+ |..+++-=-+++.+-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD--id----EA~kLadri~vm~~G 212 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD--ID----EALKLADRIAVMDAG 212 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC--HH----HHHhhhceEEEecCC
Confidence 99999999999987 2 110 3458999999996 11 334444444555555
Q ss_pred ceeeccCCCC
Q 021147 274 AKQIFDIPES 283 (317)
Q Consensus 274 ~ilIlDEPts 283 (317)
.+.=+|.|..
T Consensus 213 ~i~Q~~~P~~ 222 (309)
T COG1125 213 EIVQYDTPDE 222 (309)
T ss_pred eEEEeCCHHH
Confidence 6666666655
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-06 Score=83.26 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=49.3
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++-+.++..|..+..+ ++.+ |.+.+|++++|+|+||||||||+++|+++.. |+.+.+...|.
T Consensus 112 ~~R~~~~~~~~tGi~~-----id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGe 173 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRA-----INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGE 173 (411)
T ss_pred HhccCcceEeeeeEEe-----ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEec
Confidence 3444555566444333 7888 9999999999999999999999999999998 87777766665
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=81.31 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.++|+||||||||||+++|.++..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 356799999999999999999999986
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.9e-06 Score=82.20 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=41.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++.+ +.+.+|+.++|+|+||+|||||+++|+|..+ ++.|.+...|..
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 6665 9999999999999999999999999999998 888888766653
|
|
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.9e-06 Score=82.95 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=43.4
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++ +++.+|++++|+|+||||||||+++|++... ++.+.|...|.+
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGer 194 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGER 194 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCcc
Confidence 8999 9999999999999999999999999999988 778888877764
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=71.53 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=25.1
Q ss_pred ccccceeeccCCCC-------CCHHHHHHHHHHHHHHHHh
Q 021147 270 GIPPAKQIFDIPES-------SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 270 ~~~p~ilIlDEPts-------LD~~t~~~l~~~l~~l~~~ 302 (317)
..+|+++|+| |.+ +|+.....+.+.+.++.+.
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~ 147 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ 147 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5799999999 653 5888888888888877654
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=81.68 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=37.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc--EEEE
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTY 141 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G--~I~i 141 (317)
+++.++.+++|+++++|||||+||||++..|++.+. ...| +|.+
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~-----~~~G~kkV~l 220 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV-----AREGADQLAL 220 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH-----HHcCCCeEEE
Confidence 677888888999999999999999999999999986 5555 4544
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-06 Score=76.06 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||.|+||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=73.62 Aligned_cols=130 Identities=14% Similarity=0.212 Sum_probs=98.1
Q ss_pred CceeeEeccc--CCCCcccccceeecc---CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEY--TIPRGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~--~l~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.+.||||+| .|+|..+++...... .......+++.++++.+|+-+ .+.+.++.+.+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------------~~l~R~P~eLSGG 145 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------------SFLDRRPHELSGG 145 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------------HHHhcCchhcChh
Confidence 4578999986 588998888754222 223344455777888888632 2346788899999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
+.|++++|+++.. |... ...+.+.++++| +.+..+|+.... +.-++.+...
T Consensus 146 Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V-m~~G~ivE~~ 224 (252)
T COG1124 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV-MDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee-eeCCeEEEee
Confidence 9999999999988 3110 344679999999 477788888888 8999999999
Q ss_pred cceeeccCCCCCCHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVD 294 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~ 294 (317)
|.-.|++-|.+ ++++..+..
T Consensus 225 ~~~~l~~~~~h--~ytr~Ll~a 244 (252)
T COG1124 225 PTEELLSHPSH--PYTRELLEA 244 (252)
T ss_pred chhhhhcCCcc--HHHHHHHHh
Confidence 99999999999 888776543
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.4e-06 Score=82.84 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=34.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++ |.|.+|++++|+|+||+|||||+++|+|+.+
T Consensus 159 ID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 159 INGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 8999 9999999999999999999999999999987
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.7e-06 Score=75.77 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i 141 (317)
++||+|+||||||||++.|.+++. +..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEE
Confidence 489999999999999999999998 76665443
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-06 Score=72.53 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++++++.+| +++|+|||||||||++.+|.-++-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 77888888887 999999999999999999887775
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-06 Score=68.51 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHh--hccc
Q 021147 106 LLLIGPKGSGKSSLVNRIS--KVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~--Gl~~ 128 (317)
++|+|++|||||||++.|. +...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~ 26 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA 26 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee
Confidence 6899999999999999999 6666
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.6e-06 Score=86.74 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred hhcCcHHHHHhhcccceec----------cccceeeccCCC-C-CCHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLG----------IPPAKQIFDIPE-S-SDPENELIIVDMLRYC 299 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~----------~~p~ilIlDEPt-s-LD~~t~~~l~~~l~~l 299 (317)
+..||+||+||+++|++++ .+|+++|||||+ + ||+.+...+.+.|.++
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL 525 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC
Confidence 4689999999999999987 599999999998 7 9999999999999987
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.9e-06 Score=78.36 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=31.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++||.|+||||||||+++|.+++..- |.+|+|.+-+.+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~---~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW---PEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc---CCCCceEEEecc
Confidence 489999999999999999999998622 557777764443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-06 Score=72.09 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999875
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.3e-06 Score=85.66 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=44.5
Q ss_pred hcCcHHHHHhhcccceeccc----cceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIP----PAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~----p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..|||||+||+++|++++.. |+++|||||++ ||+.+...+.+.|+++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~ 491 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS 491 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999875 69999999999 99999999999999875
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-06 Score=85.30 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=44.5
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..+||||+||+++|++++. +|+++|||||++ ||..+...+.+.++++.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~ 481 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG 481 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 3579999999999999997 589999999999 99999999999999884
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.7e-06 Score=71.90 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=37.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCC---CCCCcCcEEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND---KFASERAQVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~---~~~p~~G~I~i~g~ 144 (317)
|+++++..+++++ +|+|++|||||||++.+.+-.... ...|..+++.+++.
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNI 63 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCE
Confidence 8889999888776 999999999999999998732100 11245666766654
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.2e-06 Score=81.04 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=33.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+ |.+.+|++++|+|+||||||||+++|++...
T Consensus 153 ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 153 INAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 6667 9999999999999999999999999999887
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=8e-06 Score=77.94 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=36.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++|++++|+|||||||||++..|++.+. +..++|.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecC
Confidence 5789999999999999999999999998 878899987654
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.8e-05 Score=79.67 Aligned_cols=35 Identities=20% Similarity=0.043 Sum_probs=30.3
Q ss_pred eeccccceeeccCCCC-C-CHHHHHHHHHHHHHHHHh
Q 021147 268 LLGIPPAKQIFDIPES-S-DPENELIIVDMLRYCLEH 302 (317)
Q Consensus 268 al~~~p~ilIlDEPts-L-D~~t~~~l~~~l~~l~~~ 302 (317)
.+..+|+++++|||.. | |+.....+.+.++.+.+.
T Consensus 648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~ 684 (818)
T PRK13830 648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA 684 (818)
T ss_pred hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc
Confidence 3467999999999999 9 799999999999987653
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.2e-05 Score=71.26 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=34.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++|.+++|+|+||||||||+++|.+.+.+ ...|.+.++|.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~----~~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE----LGVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh----CCCCEEEEcCEe
Confidence 67899999999999999999999998751 235689988864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 317 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-10
Identities = 55/377 (14%), Positives = 116/377 (30%), Gaps = 100/377 (26%)
Query: 3 GEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYD 62
E+ +F EE++ F + + + ++QR R ++ + Q +
Sbjct: 75 QEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDN-QVFA 127
Query: 63 QL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121
+ +R+ + +L P + + G+ GSGK+ +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNV-LIDGV------------------LGSGKTWVAL 168
Query: 122 ------RISKVFENDKF-ASERAQVTYNSSVGDGTYFLQE--YTI----PRGVRHGELVI 168
++ + F + + +S LQ+ Y I H +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 169 RRSDS--SSLRNRMRCKAHKIG-------CEPSVIRKVNF---VIF------VVDGLAVL 210
R S + LR ++ K ++ N ++ V D L+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 211 K----SMEGDSDV--EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL------SLTDR 258
S++ S + ++ +C D P V+T S+ D
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAESIRDG 340
Query: 259 -ARIRTY-------LGELLG-----IPPA--KQIFD----IPESSD-PENELIIV--DML 296
A + L ++ + PA +++FD P S+ P L ++ D++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 297 RYCLEHADRNLSCKSCA 313
+ + L S
Sbjct: 401 KSDVMVVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-05
Identities = 58/352 (16%), Positives = 101/352 (28%), Gaps = 134/352 (38%)
Query: 11 FTP-EGEEIISPV---DDFDIP---------LLSGDDEGSRD---SWDSLVDQRRRDAVF 54
TP E + ++ D+P LS E RD +WD+ D +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLT 356
Query: 55 REVLQSYDQL-----RTRIGSLT----DAK--NKILSYTPGAWIENVGGMTLSDYDVPKT 103
+ S + L R L+ A +LS W + + DV
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFD------VIKSDVMVV 407
Query: 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRH 163
+ L K SLV + K + T + +I +
Sbjct: 408 VNKLH-------KYSLVEKQPK---------------------ESTISI--PSI-----Y 432
Query: 164 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS---DVE 220
EL ++ + +L H+ +VD + K+ + D
Sbjct: 433 LELKVKLENEYAL--------HRS---------------IVDHYNIPKTFDSDDLIPPYL 469
Query: 221 KQY--NQIV-----------ATTFNCPYLSF-------RDDKPVVVVTHGDLLSLTDRAR 260
QY + I T F +L F R D + L +L
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ--- 526
Query: 261 IRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSC 312
++ Y I D +DP+ E ++ +L + + + + K
Sbjct: 527 LKFYK---------PYICD----NDPKYERLVNAILDFLPKIEENLICSKYT 565
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.94 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.94 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.93 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.9 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.89 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.88 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.88 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.87 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.86 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.85 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.78 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.78 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.75 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.72 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.71 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.7 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.66 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.66 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.65 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.64 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.63 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.61 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.61 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.59 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.59 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.59 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.59 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.58 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.58 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.57 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.56 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.55 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.54 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.53 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.52 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.51 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.51 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.5 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.48 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.48 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.47 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.47 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.46 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.46 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.46 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.46 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.44 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.44 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.43 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.41 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.41 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.4 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.39 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.37 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.35 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.34 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.34 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.31 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.28 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.25 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.24 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.23 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.2 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.2 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.2 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.18 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.18 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.16 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.15 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.14 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.14 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.13 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.12 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.06 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.06 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.04 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.03 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.03 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.03 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.0 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.99 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.97 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.95 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.94 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.93 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.93 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.85 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.84 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.83 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.81 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.78 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.76 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.72 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.7 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.7 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.68 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.68 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.66 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.62 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.6 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.58 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.56 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.52 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.49 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.4 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.4 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.39 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.38 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.36 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.33 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.31 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.28 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.28 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.26 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.26 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.23 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.13 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.1 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.09 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.08 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.04 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.03 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.02 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.96 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.95 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.95 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.93 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.92 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.87 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.85 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.82 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.79 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.79 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.77 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.77 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.74 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.73 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.73 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.73 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.71 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.7 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.69 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.67 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.66 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.56 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.56 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.53 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.52 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.51 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.5 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.49 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.48 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.48 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.45 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.43 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.41 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.39 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.38 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.38 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.38 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.36 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.36 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.35 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.34 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.31 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.31 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.3 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.29 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.27 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.25 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.23 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.21 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.19 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.19 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.17 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.17 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.15 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.15 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.14 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.11 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.1 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.08 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.07 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.06 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.05 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.04 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.03 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.03 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.03 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.01 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.0 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.99 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.98 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.98 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.96 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.96 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.96 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.93 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.92 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.91 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.9 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.88 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.87 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.86 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.84 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.82 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.82 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.81 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.79 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.78 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.77 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.76 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.76 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.75 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.74 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.74 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.73 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.72 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.71 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.71 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.7 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.7 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.68 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.66 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.66 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.66 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.66 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.66 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.65 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.65 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.64 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.62 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.61 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.6 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.59 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.59 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.58 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.58 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.58 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.58 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.57 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.57 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.56 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.55 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.55 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.55 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.54 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.53 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.52 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.51 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.5 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.5 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.5 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.49 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.49 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.48 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.47 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.47 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.47 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.46 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.46 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.46 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.46 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.45 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.43 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.41 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.39 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.39 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.38 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.37 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.37 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.37 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.37 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.36 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.36 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.36 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.36 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.35 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.35 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.35 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.34 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.34 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.33 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.31 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.3 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.3 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.3 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.29 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.29 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.28 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.27 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.26 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.25 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.25 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.25 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.24 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.24 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.23 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.23 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.23 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.23 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.23 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.23 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.22 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.22 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.21 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.21 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.21 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.21 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.2 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.2 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.18 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.18 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.18 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.18 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.18 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.17 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.16 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.14 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.14 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.13 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.13 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.12 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.12 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.1 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.1 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.1 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.09 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.09 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.09 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.08 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.07 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.07 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.07 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.05 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.05 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.05 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.05 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.05 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.04 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.04 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.04 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.03 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.03 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.02 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.01 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.01 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.0 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.98 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.97 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.97 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.97 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.95 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.94 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.93 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.91 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.9 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.9 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.89 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.86 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.85 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.84 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.84 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.84 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.83 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.82 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.82 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.81 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.81 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.81 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.81 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.8 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.78 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.78 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.75 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.73 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.72 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.72 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.72 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.69 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.68 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.66 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.65 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.64 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.62 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.6 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.59 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 95.57 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.55 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.54 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.53 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.5 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.5 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.49 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.44 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.4 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.37 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.37 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.37 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.34 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.31 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.23 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.2 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 95.15 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.1 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.1 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.09 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.07 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.02 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.01 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 95.01 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.99 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.99 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.93 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.93 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 94.88 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.88 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.86 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.84 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.76 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.76 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 94.76 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.75 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.75 |
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=350.48 Aligned_cols=226 Identities=18% Similarity=0.227 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCC
Q 021147 43 SLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114 (317)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGs 114 (317)
.++.+..+..|++++++.+++... ...+.|+++||+|+|++...+ |+||||+|++||++||||||||
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSSCH
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCCCc
Confidence 344556667778887765443221 123469999999999755444 9999999999999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccc
Q 021147 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 194 (317)
Q Consensus 115 GKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~ 194 (317)
|||||+|+|+|+++ |++|+|+++|++ +..++...+++. ||||||++
T Consensus 92 GKSTLl~ll~gl~~-----p~~G~I~i~G~~----------------------i~~~~~~~~r~~-------i~~v~Q~~ 137 (306)
T 3nh6_A 92 GKSTILRLLFRFYD-----ISSGCIRIDGQD----------------------ISQVTQASLRSH-------IGVVPQDT 137 (306)
T ss_dssp HHHHHHHHHTTSSC-----CSEEEEEETTEE----------------------TTSBCHHHHHHT-------EEEECSSC
T ss_pred hHHHHHHHHHcCCC-----CCCcEEEECCEE----------------------cccCCHHHHhcc-------eEEEecCC
Confidence 99999999999999 999999999987 666777777776 99999999
Q ss_pred ccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc
Q 021147 195 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 195 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~ 272 (317)
.+|+ .||++|+.++..... .+++.++++.+++. ...++.|+.+.+++.| .+||||||||++|||||+.+
T Consensus 138 ~lf~--~Tv~eNi~~~~~~~~-----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g--~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 138 VLFN--DTIADNIRYGRVTAG-----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG--LKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp CCCS--EEHHHHHHTTSTTCC-----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTS--BCCCHHHHHHHHHHHHHHHC
T ss_pred ccCc--ccHHHHHHhhcccCC-----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCc--CCCCHHHHHHHHHHHHHHhC
Confidence 8885 499999998753222 23477788888873 3457789999999998 89999999999999999999
Q ss_pred cceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 273 PAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 273 p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|+++||||||+ ||+.++..+++.|+++.+. ..|+++.+.. +|||
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i 258 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQI 258 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEE
Confidence 99999999999 9999999999999987542 4566666665 6764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=390.14 Aligned_cols=226 Identities=15% Similarity=0.181 Sum_probs=199.0
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCCC--ccccccCceeeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDY 98 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl 98 (317)
+...+.......|..+..+..+..|+.++++.+++... +..+.|+|+||+|+|+++. .+ |+||||
T Consensus 1026 ~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V-----L~~isl 1100 (1321)
T 4f4c_A 1026 ISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI-----LKGLSF 1100 (1321)
T ss_dssp TTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS-----EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc-----ccceeE
Confidence 45677888888999999999999999999987665433 1235799999999997542 33 999999
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
+|++||.+||||+||||||||+++|.|+|+ |++|+|++||.+ +++++.+.+|+
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~d----------------------i~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSE----------------------IKTLNPEHTRS 1153 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEE----------------------TTTBCHHHHHT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEE----------------------hhhCCHHHHHh
Confidence 999999999999999999999999999999 999999999998 78899999998
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCc
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLT 256 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LS 256 (317)
+ |++|||+|.+|++ ||++||.++.... +...+++.++++.++++ +..+|+|+++.|+++| .+||
T Consensus 1154 ~-------i~~V~Qdp~LF~g--TIreNI~~gld~~---~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G--~~LS 1219 (1321)
T 4f4c_A 1154 Q-------IAIVSQEPTLFDC--SIAENIIYGLDPS---SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG--TQLS 1219 (1321)
T ss_dssp T-------EEEECSSCCCCSE--EHHHHHSSSSCTT---TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS--CSSC
T ss_pred h-------eEEECCCCEeeCc--cHHHHHhccCCCC---CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC--cccC
Confidence 8 9999999999976 9999999874221 12345699999999995 5678999999999999 8999
Q ss_pred HHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 257 DRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 257 gG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
||||||++|||||+++|+++||||||| ||++|++.+++.|+++.
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999 99999999999998864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=358.84 Aligned_cols=240 Identities=19% Similarity=0.210 Sum_probs=203.3
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCC-CccccccCceeeeeE
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYD 99 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~ 99 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+
T Consensus 289 ~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~ 363 (578)
T 4a82_A 289 LLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI-----LKDINLS 363 (578)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCS-----EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcc-----eeeeEEE
Confidence 45677888888999999999999999999987654322 123469999999999753 334 9999999
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
|++||++||+||||||||||+|+|+|+++ |++|+|.++|++ ++.++...++++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~r~~ 416 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHN----------------------IKDFLTGSLRNQ 416 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEE----------------------GGGSCHHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEE----------------------hhhCCHHHHhhh
Confidence 99999999999999999999999999999 999999999987 667787777776
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTD 257 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSg 257 (317)
|||+||++.+|+. ||+||+.++.+.. ..+++.++++.++++ ...+|+|+.+.++++| .+|||
T Consensus 417 -------i~~v~Q~~~l~~~--tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g--~~LSg 480 (578)
T 4a82_A 417 -------IGLVQQDNILFSD--TVKENILLGRPTA-----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG--VKLSG 480 (578)
T ss_dssp -------EEEECSSCCCCSS--BHHHHHGGGCSSC-----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG--TTSCH
T ss_pred -------eEEEeCCCccCcc--cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC--CcCCH
Confidence 9999999988865 9999999875322 124577888888874 4457889999999998 89999
Q ss_pred HHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 258 RARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 258 G~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||||+++|||++++|+++||||||+ ||+.++..+.+.++++.+. ..|+++.+.. +|||
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 99999999999999999999999999 9999999999999887542 5677777754 7764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=386.72 Aligned_cols=239 Identities=16% Similarity=0.158 Sum_probs=205.9
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCC--CccccccCceeee
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSD 97 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~--~~~~~~~~L~~is 97 (317)
.+..++......+..+.+++.+..|+.++++.++.... ...+.|+++||+|+|++. .++ |+|||
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v-----L~~is 438 (1321)
T 4f4c_A 364 MGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI-----LRGMN 438 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS-----EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce-----eeceE
Confidence 44556777788889999999999999999987655432 123469999999999753 233 99999
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLR 177 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r 177 (317)
|+|++|+.+|||||||||||||+++|.|+|+ |++|+|.+||.+ +++++...+|
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~----------------------i~~~~~~~lr 491 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVD----------------------VRDINLEFLR 491 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEE----------------------TTTSCHHHHH
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccc-----cccCcccCCCcc----------------------chhccHHHHh
Confidence 9999999999999999999999999999999 999999999998 7889999999
Q ss_pred HHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcC
Q 021147 178 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSL 255 (317)
Q Consensus 178 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~L 255 (317)
++ ||||+|+|.+|+. ||+|||.++.+... .+++.++++.++++ +..+|+|+.|.|+++| ..|
T Consensus 492 ~~-------i~~v~Q~~~Lf~~--TI~eNI~~g~~~~~-----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G--~~L 555 (1321)
T 4f4c_A 492 KN-------VAVVSQEPALFNC--TIEENISLGKEGIT-----REEMVAACKMANAEKFIKTLPNGYNTLVGDRG--TQL 555 (1321)
T ss_dssp HH-------EEEECSSCCCCSE--EHHHHHHTTCTTCC-----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS--CCC
T ss_pred hc-------ccccCCcceeeCC--chhHHHhhhcccch-----HHHHHHHHHHccchhHHHcCCCCCccEecCCC--CCC
Confidence 88 9999999999976 99999999865332 35689999999984 5678999999999999 899
Q ss_pred cHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCC
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNK 316 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~ 316 (317)
|||||||++||||++++|+++||||||| ||+.++..+++.|.++.+. ..|+++.+.. +|+
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~-aD~ 621 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADL 621 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT-CSE
T ss_pred CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh-CCE
Confidence 9999999999999999999999999999 9999999999999987643 4566665543 454
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=360.48 Aligned_cols=240 Identities=18% Similarity=0.191 Sum_probs=201.5
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc-------CCCCceEEEeEEEEcCCCCccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~ 101 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...+.|+++||+|+|++...+ |+|+||+|+
T Consensus 305 ~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~isl~i~ 379 (598)
T 3qf4_B 305 QFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPV-----LKDITFHIK 379 (598)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSCS-----CCSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceEEEEc
Confidence 44566777888999999999999999999987654321 123469999999999765444 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+|+|+|+++ |++|+|.++|++ +..++...++++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~----------------------i~~~~~~~~r~~-- 430 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGID----------------------IRKIKRSSLRSS-- 430 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEE----------------------GGGSCHHHHHHH--
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEE----------------------hhhCCHHHHHhc--
Confidence 999999999999999999999999999 999999999987 677888888877
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|||+||++.+|+. ||+||+.++.+..... ++.++++.++++ ...+++|+.+.++++| .+|||||
T Consensus 431 -----i~~v~Q~~~lf~~--tv~eni~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g--~~LSgGq 496 (598)
T 3qf4_B 431 -----IGIVLQDTILFST--TVKENLKYGNPGATDE-----EIKEAAKLTHSDHFIKHLPEGYETVLTDNG--EDLSQGQ 496 (598)
T ss_dssp -----EEEECTTCCCCSS--BHHHHHHSSSTTCCTT-----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHH--TTSCHHH
T ss_pred -----eEEEeCCCccccc--cHHHHHhcCCCCCCHH-----HHHHHHHHhCCHHHHHhccccccchhcCCC--CCCCHHH
Confidence 9999999988864 9999999875433222 366777777773 4457889999999988 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.++..+.+.++++.+. ..|+++.+.. +|||
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i 559 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLI 559 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 999999999999999999999999 9999999999999987542 4667777655 7764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=324.47 Aligned_cols=198 Identities=18% Similarity=0.218 Sum_probs=160.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+|+|++...+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 6 ~~l~i~~ls~~y~~~~~~-----L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~---- 71 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHA-----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKP---- 71 (275)
T ss_dssp EEEEEEEEEEECTTSCEE-----EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEEEEEEECCCCeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEE----
Confidence 479999999999765444 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQI 226 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~ 226 (317)
+. ..+...++ +.|||+||++....+.+||++|+.++...... .....+++.+
T Consensus 72 ------------------i~~~~~~~~~~~-------~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 72 ------------------IDYSRKGIMKLR-------ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126 (275)
T ss_dssp ------------------CCCSHHHHHHHH-------HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ------------------CCcccccHHHHh-------CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 31 11122233 34999999874222257999999987543322 2344567788
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH-Hh--
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL-EH-- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~-~~-- 302 (317)
+++.+++... . +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++. +.
T Consensus 127 ~l~~~~L~~~--~-~~~~--------~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~ 195 (275)
T 3gfo_A 127 ALKRTGIEHL--K-DKPT--------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195 (275)
T ss_dssp HHHHTTCGGG--T-TSBG--------GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCchh--h-cCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC
Confidence 8999998432 2 2333 7999999999999999999999999999999 99999999999999986 32
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 196 tvi~vtHdl~~~~~~~drv 214 (275)
T 3gfo_A 196 TIIIATHDIDIVPLYCDNV 214 (275)
T ss_dssp EEEEEESCCSSGGGGCSEE
T ss_pred EEEEEecCHHHHHHhCCEE
Confidence 678888888888875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=357.04 Aligned_cols=238 Identities=18% Similarity=0.172 Sum_probs=197.8
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc--------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 31 SGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
..+.......|..+.+++.+.+|+.++++.+++... ...+.|+++||+|+|++. ..+ |+|+||+|+
T Consensus 293 ~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~i~ 367 (587)
T 3qf4_A 293 MFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-----LSGVNFSVK 367 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcc-----eeceEEEEc
Confidence 345566677888899999999999999986654322 123469999999999643 333 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+++|+|+++ |++|+|.+||++ +..++...++++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~----------------------i~~~~~~~~r~~-- 418 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID-----PERGRVEVDELD----------------------VRTVKLKDLRGH-- 418 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSB----------------------GGGBCHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEE----------------------cccCCHHHHHhh--
Confidence 999999999999999999999999999 999999999998 677888888877
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|+|+||++.+|+. ||+||+.++.+.. ..+++.++++.++++ ...+|+|+.+.++++| .+|||||
T Consensus 419 -----i~~v~Q~~~lf~~--tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~--~~LSgGq 484 (587)
T 3qf4_A 419 -----ISAVPQETVLFSG--TIKENLKWGREDA-----TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG--RNFSGGQ 484 (587)
T ss_dssp -----EEEECSSCCCCSE--EHHHHHTTTCSSC-----CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSS--CSSCHHH
T ss_pred -----eEEECCCCcCcCc--cHHHHHhccCCCC-----CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCC--CCcCHHH
Confidence 9999999998865 9999998765322 224467788888874 4457889999999998 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i 547 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKI 547 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEE
Confidence 999999999999999999999999 9999999999999887432 345666654 56764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=354.02 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=200.0
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...++|+++||+|+|+++ ..+ |+|+||+|+
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~i~l~i~ 367 (582)
T 3b5x_A 293 GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA-----LSHVSFSIP 367 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEEC
Confidence 45667788888999999999999999999986654321 123579999999999753 344 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+|+|+|+++ |++|+|.++|++ +...+...++++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~~~~-- 418 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHD----------------------VRDYKLTNLRRH-- 418 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEE----------------------hhhCCHHHHhcC--
Confidence 999999999999999999999999999 999999999987 555666666665
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|||+||++.+|+ .||+||+.++.. +. ...+++.++++.++++ ...+|+|+++.++++| .+|||||
T Consensus 419 -----i~~v~Q~~~l~~--~tv~eni~~~~~-~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~--~~LSgGq 485 (582)
T 3b5x_A 419 -----FALVSQNVHLFN--DTIANNIAYAAE-GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENG--TSLSGGQ 485 (582)
T ss_pred -----eEEEcCCCcccc--ccHHHHHhccCC-CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCC--CcCCHHH
Confidence 999999998886 499999998641 11 1235578889999984 4457889999999998 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i 548 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEI 548 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEE
Confidence 999999999999999999999999 9999999999999987531 445666554 46764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=353.91 Aligned_cols=241 Identities=17% Similarity=0.191 Sum_probs=200.1
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc------CCCCceEEEeEEEEcCCC-CccccccCceeeeeEec
Q 021147 29 LLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVP 101 (317)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~ 101 (317)
.+..+.......|..+.++..+.+|+.++++.+++... ...++|+++||+|+|+++ ..+ |+|+||+|+
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~ 367 (582)
T 3b60_A 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIP 367 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEc
Confidence 45567777888999999999999999999986654321 123579999999999743 344 999999999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMR 181 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 181 (317)
+||++||+||||||||||+|+|+|+++ |++|+|.++|++ +...+...++++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~----------------------~~~~~~~~~~~~-- 418 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHD----------------------LREYTLASLRNQ-- 418 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEE----------------------TTTBCHHHHHHT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCeEEECCEE----------------------ccccCHHHHHhh--
Confidence 999999999999999999999999999 999999999987 556676677766
Q ss_pred HhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHH
Q 021147 182 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 182 ~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
|||+||++.+|+. ||+||+.++.. +. ...+++.++++.++++ ...+|+|+.+.++++| .+|||||
T Consensus 419 -----i~~v~Q~~~l~~~--tv~eni~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~--~~LSgGq 485 (582)
T 3b60_A 419 -----VALVSQNVHLFND--TVANNIAYART-EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENG--VLLSGGQ 485 (582)
T ss_dssp -----EEEECSSCCCCSS--BHHHHHHTTTT-SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS--CSSCHHH
T ss_pred -----CeEEccCCcCCCC--CHHHHHhccCC-CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCC--CCCCHHH
Confidence 9999999988864 99999998641 11 1235578888988884 4457889999998888 8999999
Q ss_pred HHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
|||++||||++++|+++||||||+ ||+.+++.+.+.++++.+. ..|+++.+. .+|||
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i 548 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEI 548 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEE
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEE
Confidence 999999999999999999999999 9999999999999997532 556676665 47764
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=330.82 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=165.4
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+++|+++||+++|+.+.. .+.+|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~--~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~-- 91 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQE-- 91 (366)
T ss_dssp --CCEEEEEEEEEEECSSS--EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE--
T ss_pred CCceEEEEeEEEEeCCCCC--CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 4568999999999964321 0112999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+..++...+++. .+.|||+||++.+++ .+||++|+.++..... ......+++.+
T Consensus 92 --------------------i~~~~~~~~~~~----r~~Ig~v~Q~~~l~~-~~TV~env~~~~~~~~~~~~~~~~~v~~ 146 (366)
T 3tui_C 92 --------------------LTTLSESELTKA----RRQIGMIFQHFNLLS-SRTVFGNVALPLELDNTPKDEVKRRVTE 146 (366)
T ss_dssp --------------------CSSCCHHHHHHH----HTTEEEECSSCCCCT-TSCHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --------------------CCcCCHHHHHHH----hCcEEEEeCCCccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 555555444321 234999999997654 6899999998653322 22345567888
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 147 lL~~vgL~~--~~~~~~---------~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~ 215 (366)
T 3tui_C 147 LLSLVGLGD--KHDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215 (366)
T ss_dssp HHHHHTCGG--GTTCCT---------TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCch--HhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999843 223455 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 216 Tii~vTHdl~~~~~~aDrv 234 (366)
T 3tui_C 216 TILLITHEMDVVKRICDCV 234 (366)
T ss_dssp EEEEEESCHHHHHHHCSEE
T ss_pred EEEEEecCHHHHHHhCCEE
Confidence 567788888888875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=315.54 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=164.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+.++|+++||++.|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 8 ~~~~l~~~~l~~~~~~~-~v-----L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~-- 74 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQQ-AL-----INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQN-- 74 (266)
T ss_dssp CCCEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEE--
T ss_pred CcceEEEEeEEEEeCCe-eE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEE--
Confidence 34689999999999754 34 999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+..++...+++. ++|++|++.++. .+||++|+.++.... ......+++.++
T Consensus 75 --------------------~~~~~~~~~~~~-------i~~v~q~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~ 125 (266)
T 4g1u_C 75 --------------------LNSWQPKALART-------RAVMRQYSELAF-PFSVSEVIQMGRAPY-GGSQDRQALQQV 125 (266)
T ss_dssp --------------------TTTSCHHHHHHH-------EEEECSCCCCCS-CCBHHHHHHGGGTTS-CSTTHHHHHHHH
T ss_pred --------------------CCcCCHHHHhhe-------EEEEecCCccCC-CCCHHHHHHhhhhhc-CcHHHHHHHHHH
Confidence 555666666655 999999987543 579999999865322 223345667888
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc------ccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI------PPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
++.+++... . +... .+||||||||++|||||+. +|+++||||||+ ||+.++..+.+.|+++.
T Consensus 126 l~~~~l~~~--~-~~~~--------~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 126 MAQTDCLAL--A-QRDY--------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp HHHTTCSTT--T-TSBG--------GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHcCChhH--h-cCCc--------ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 999987422 2 2333 6899999999999999999 999999999999 99999999999999986
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+..++|||
T Consensus 195 ~~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 195 RQEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp HHSSEEEEEECSCHHHHHHHCSEE
T ss_pred HcCCCEEEEEEcCHHHHHHhCCEE
Confidence 53 578888888888875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=311.38 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=160.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
+++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 5 ~~~l~i~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~--- 70 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF-KA-----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKD--- 70 (257)
T ss_dssp CEEEEEEEEEEEETTE-EE-----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred CcEEEEeeeEEEECCE-ee-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEE---
Confidence 3579999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChH-HHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc---C----------
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSS-SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM---E---------- 214 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~---~---------- 214 (317)
+...+.. .+++ .|||+||++.+++ .+||.+|+.++... .
T Consensus 71 -------------------~~~~~~~~~~~~-------~i~~v~q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 123 (257)
T 1g6h_A 71 -------------------ITNKEPAELYHY-------GIVRTFQTPQPLK-EMTVLENLLIGEICPGESPLNSLFYKKW 123 (257)
T ss_dssp -------------------CTTCCHHHHHHH-------TEEECCCCCGGGG-GSBHHHHHHGGGTSTTSCHHHHHHHCSS
T ss_pred -------------------CCCCCHHHHHhC-------CEEEEccCCccCC-CCcHHHHHHHHHhhhccCcccccccccc
Confidence 3333322 2233 3999999987554 68999999886432 1
Q ss_pred -CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 215 -GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 215 -~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
.......+++.++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+
T Consensus 124 ~~~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l 192 (257)
T 1g6h_A 124 IPKEEEMVEKAFKILEFLKLSHLY---DRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192 (257)
T ss_dssp CCCCHHHHHHHHHHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCchhh---CCCc--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 11233456677889999874222 2333 7999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|++..+..++|||
T Consensus 193 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v 223 (257)
T 1g6h_A 193 FNHVLELKAKGITFLIIEHRLDIVLNYIDHL 223 (257)
T ss_dssp HHHHHHHHHTTCEEEEECSCCSTTGGGCSEE
T ss_pred HHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 9999998653 578888888888875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=307.95 Aligned_cols=200 Identities=16% Similarity=0.247 Sum_probs=157.5
Q ss_pred ceEEEeEEEEcCCCC---ccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~~---~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
+|+++||+|+|+++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~-----L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~-- 68 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA-----LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIK-- 68 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE--
T ss_pred CEEEEEEEEEeCCCCcceee-----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 589999999996432 23 999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---C-CChHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---G-DSDVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~-~~~~~~~~ 223 (317)
+..++...+.+. ..+.|||+||++.+++ .+||++|+.++.... . ......++
T Consensus 69 --------------------~~~~~~~~~~~~---~~~~i~~v~Q~~~l~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ 124 (235)
T 3tif_A 69 --------------------TNDLDDDELTKI---RRDKIGFVFQQFNLIP-LLTALENVELPLIFKYRGAMSGEERRKR 124 (235)
T ss_dssp --------------------CTTCCHHHHHHH---HHHHEEEECTTCCCCT-TSCHHHHHHHHHHTCSSSCCCHHHHHHH
T ss_pred --------------------cccCCHHHHHHH---hhccEEEEecCCccCC-CCcHHHHHHHHHHhhhccCCCHHHHHHH
Confidence 445555443211 1123999999997554 579999998764321 1 12334566
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+.++++.+++... +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.++++.+.
T Consensus 125 ~~~~l~~~~l~~~-~~~~~~---------~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 194 (235)
T 3tif_A 125 ALECLKMAELEER-FANHKP---------NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194 (235)
T ss_dssp HHHHHHHTTCCGG-GTTCCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCChh-hhhCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 7788888887421 112333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -------cCCCcchhhcccCCC
Q 021147 303 -------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -------~~~~~~~~~~~~~~~ 317 (317)
..|++..+ ..+|||
T Consensus 195 ~g~tvi~vtHd~~~~-~~~d~i 215 (235)
T 3tif_A 195 DGKTVVVVTHDINVA-RFGERI 215 (235)
T ss_dssp HCCEEEEECSCHHHH-TTSSEE
T ss_pred cCCEEEEEcCCHHHH-HhCCEE
Confidence 66777644 567764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=305.40 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=156.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 3 ~~l~~~~l~~~y~~~-~~-----l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 67 (224)
T 2pcj_A 3 EILRAENIKKVIRGY-EI-----LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKE---- 67 (224)
T ss_dssp EEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEeEEEEECCE-ee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a 228 (317)
+...+....... ..+.|||+||++.+++ .+||.+|+.++....... ....+++.+++
T Consensus 68 ------------------~~~~~~~~~~~~---~~~~i~~v~q~~~l~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 125 (224)
T 2pcj_A 68 ------------------VDYTNEKELSLL---RNRKLGFVFQFHYLIP-ELTALENVIVPMLKMGKPKKEAKERGEYLL 125 (224)
T ss_dssp ------------------CCSSCHHHHHHH---HHHHEEEECSSCCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------------------CCCCCHHHHHHH---HhCcEEEEecCcccCC-CCCHHHHHHhHHHHcCCCHHHHHHHHHHHH
Confidence 434443322110 0123999999987554 689999998764322212 23345677889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +... .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~~~~l~~~~---~~~~--------~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi 194 (224)
T 2pcj_A 126 SELGLGDKL---SRKP--------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194 (224)
T ss_dssp HHTTCTTCT---TCCG--------GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHcCCchhh---hCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999974222 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+ ..+|+|
T Consensus 195 ~vtHd~~~~-~~~d~v 209 (224)
T 2pcj_A 195 MVTHERELA-ELTHRT 209 (224)
T ss_dssp EECSCHHHH-TTSSEE
T ss_pred EEcCCHHHH-HhCCEE
Confidence 45666665 567764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=312.56 Aligned_cols=196 Identities=13% Similarity=0.206 Sum_probs=158.6
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 23 ~~l~i~~l~~~y~~~-~v-----L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~---- 87 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL-EV-----LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGIN---- 87 (263)
T ss_dssp CSEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred heEEEEeEEEEECCE-EE-----EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEE----
Confidence 479999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCCCC-hHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDS-DVEKQYNQ 225 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~~~-~~~~~~~~ 225 (317)
+. ..+...+++. |||+||++.+++ .+||++|+.++. ...... ....+++.
T Consensus 88 ------------------i~~~~~~~~~~~~~-------i~~v~Q~~~l~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 141 (263)
T 2olj_A 88 ------------------LKAKDTNLNKVREE-------VGMVFQRFNLFP-HMTVLNNITLAPMKVRKWPREKAEAKAM 141 (263)
T ss_dssp ------------------SSSTTCCHHHHHHH-------EEEECSSCCCCT-TSCHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ------------------CCCccccHHHHhCc-------EEEEeCCCcCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 2233344444 999999987554 679999998853 222212 23345677
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 142 ~~l~~~~L~~~~---~~~~--------~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~ 210 (263)
T 2olj_A 142 ELLDKVGLKDKA---HAYP--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 210 (263)
T ss_dssp HHHHHTTCGGGT---TSCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCchHh---cCCh--------hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 889999974222 2333 7999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 211 tvi~vtHd~~~~~~~~d~v 229 (263)
T 2olj_A 211 TMVVVTHEMGFAREVGDRV 229 (263)
T ss_dssp EEEEECSCHHHHHHHCSEE
T ss_pred EEEEEcCCHHHHHHhCCEE
Confidence 567777777778874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=308.30 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=155.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 5 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~---- 69 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAI-HA-----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQD---- 69 (240)
T ss_dssp EEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred ceEEEEeEEEEECCe-eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEE----
Confidence 479999999999753 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++ +.|||+||++.+++ .+||+||+.++...........+.+.++++
T Consensus 70 ------------------~~~~~~~~~~~------~~i~~v~q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 70 ------------------ITNKPAHVINR------MGIALVPEGRRIFP-ELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124 (240)
T ss_dssp ------------------CTTCCHHHHHH------TTEEEECSSCCCCT-TSBHHHHHHGGGTTCCCSSHHHHHHHHHHH
T ss_pred ------------------CCCCCHHHHHh------CCEEEEecCCccCC-CCcHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 43444333221 23999999987554 579999999864211122333455667777
Q ss_pred HcC-CCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 230 TFN-CPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 230 ~~~-l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
.++ +... . +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 125 ~~~~l~~~--~-~~~~--------~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi 193 (240)
T 1ji0_A 125 LFPRLKER--L-KQLG--------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193 (240)
T ss_dssp HCHHHHTT--T-TSBS--------SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcccHhhH--h-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 773 5221 1 2233 6999999999999999999999999999999 9999999999999998642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 194 ~vtHd~~~~~~~~d~v 209 (240)
T 1ji0_A 194 LVEQNALGALKVAHYG 209 (240)
T ss_dssp EEESCHHHHHHHCSEE
T ss_pred EEecCHHHHHHhCCEE
Confidence 466676777777764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=308.90 Aligned_cols=198 Identities=20% Similarity=0.231 Sum_probs=156.8
Q ss_pred ceEEEeEEEEcC-CCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 71 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~-~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.|+++||+|+|+ +...+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 7 ~~~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~---- 72 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVI-----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHD---- 72 (247)
T ss_dssp EEEEEEEEEESSTTSCEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred ceeEEEEEEEeCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE----
Confidence 589999999994 23344 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
+...+...+++. |||+||++.++. .||++|+.++... . ..+++.++++
T Consensus 73 ------------------~~~~~~~~~~~~-------i~~v~Q~~~l~~--~tv~enl~~~~~~--~---~~~~~~~~l~ 120 (247)
T 2ff7_A 73 ------------------LALADPNWLRRQ-------VGVVLQDNVLLN--RSIIDNISLANPG--M---SVEKVIYAAK 120 (247)
T ss_dssp ------------------TTTSCHHHHHHH-------EEEECSSCCCTT--SBHHHHHTTTCTT--C---CHHHHHHHHH
T ss_pred ------------------hhhCCHHHHHhc-------EEEEeCCCcccc--ccHHHHHhccCCC--C---CHHHHHHHHH
Confidence 444555555555 999999998775 4999999875321 1 1334667778
Q ss_pred HcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 230 TFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 230 ~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
.+++. ...++.++...+...+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 121 ~~~l~~~~~~~~~gl~~~~~~~~--~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tvi 198 (247)
T 2ff7_A 121 LAGAHDFISELREGYNTIVGEQG--AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVI 198 (247)
T ss_dssp HHTCHHHHHTSTTGGGCBCSTTT--TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HhChHHHHHhCcchhhhhhhCCC--CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88873 1223334444333333 7999999999999999999999999999999 9999999999999998421
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|||
T Consensus 199 ivtH~~~~~~~-~d~v 213 (247)
T 2ff7_A 199 IIAHRLSTVKN-ADRI 213 (247)
T ss_dssp EECSSGGGGTT-SSEE
T ss_pred EEeCCHHHHHh-CCEE
Confidence 5566666654 7764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=326.21 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=161.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+|+|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 M~~l~~~~l~~~yg~~-~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~--- 66 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEV-VV-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKR--- 66 (381)
T ss_dssp -CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred CCEEEEEeEEEEECCE-EE-----EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEE---
Confidence 3469999999999754 33 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~ 227 (317)
+...+... + .||||||++.+|+ .+||++|+.++...... .....+++.++
T Consensus 67 -------------------~~~~~~~~--r-------~ig~VfQ~~~l~p-~ltV~eni~~~~~~~~~~~~~~~~~v~~~ 117 (381)
T 3rlf_A 67 -------------------MNDTPPAE--R-------GVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEVINQRVNQV 117 (381)
T ss_dssp -------------------CTTCCGGG--S-------CEEEECTTCCCCT-TSCHHHHHTHHHHHTTCCHHHHHHHHHHH
T ss_pred -------------------CCCCCHHH--C-------CEEEEecCCcCCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33333321 2 3999999997654 68999999987543332 23455678889
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+..+..+.+.|+++.+.
T Consensus 118 l~~~~L~~--~~~r~p---------~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t 186 (381)
T 3rlf_A 118 AEVLQLAH--LLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186 (381)
T ss_dssp HHHTTCGG--GTTCCG---------GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHcCCch--hhcCCh---------hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 99999843 223444 7999999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 187 ii~vTHd~~ea~~~aDri 204 (381)
T 3rlf_A 187 MIYVTHDQVEAMTLADKI 204 (381)
T ss_dssp EEEECSCHHHHHHHCSEE
T ss_pred EEEEECCHHHHHHhCCEE
Confidence 677777777788875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=309.96 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=157.3
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
-+++|+++||+++|++. .+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 12 ~~~~l~i~~l~~~y~~~-~v-----l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~-- 78 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKK-EI-----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKN-- 78 (256)
T ss_dssp --CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE--
T ss_pred cCCeEEEEEEEEEECCE-EE-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEE--
Confidence 46889999999999643 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~ 226 (317)
+.. ....+++ .|||+||++.+++ .+||++|+.+.... ........+++.+
T Consensus 79 --------------------~~~-~~~~~~~-------~i~~v~q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~~~~~~ 129 (256)
T 1vpl_A 79 --------------------VVE-EPHEVRK-------LISYLPEEAGAYR-NMQGIEYLRFVAGFYASSSSEIEEMVER 129 (256)
T ss_dssp --------------------TTT-CHHHHHT-------TEEEECTTCCCCT-TSBHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred --------------------CCc-cHHHHhh-------cEEEEcCCCCCCC-CCcHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 322 2223333 3999999987554 67999999875422 2111223456778
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 130 ~l~~~gL~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 130 ATEIAGLGEKI---KDRV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198 (256)
T ss_dssp HHHHHCCGGGG---GSBG--------GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHCCCchHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCE
Confidence 89999974222 2233 7999999999999999999999999999999 9999999999999998643
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..++|||
T Consensus 199 iiivtHd~~~~~~~~d~v 216 (256)
T 1vpl_A 199 ILVSSHNMLEVEFLCDRI 216 (256)
T ss_dssp EEEEECCHHHHTTTCSEE
T ss_pred EEEEcCCHHHHHHHCCEE
Confidence 567777777777764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=308.98 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=157.7
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++|+++||+++|++. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 5 ~~l~i~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~---- 69 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH-EV-----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQN---- 69 (262)
T ss_dssp CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE----
T ss_pred ceEEEeeEEEEECCE-EE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE----
Confidence 479999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeec----------cCChH---HHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-ccCC
Q 021147 150 YFLQEYTIPRGVRHGELVIR----------RSDSS---SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEG 215 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~----------~~~~~---~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~~~ 215 (317)
+. .++.. .+++. |||+||++.++ ..+||++|+.++. ....
T Consensus 70 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~v~Q~~~l~-~~ltv~e~l~~~~~~~~~ 123 (262)
T 1b0u_A 70 ------------------INLVRDKDGQLKVADKNQLRLLRTR-------LTMVFQHFNLW-SHMTVLENVMEAPIQVLG 123 (262)
T ss_dssp ------------------CCEEECTTSSEEESCHHHHHHHHHH-------EEEECSSCCCC-TTSCHHHHHHHHHHHTTC
T ss_pred ------------------ccccccccccccccChhhHHHHhcc-------eEEEecCcccC-CCCcHHHHHHhhHHHhcC
Confidence 22 12222 23333 99999998655 4689999998853 2222
Q ss_pred CC-hHHHHHHHHHHHHcCCCcc-cCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHH
Q 021147 216 DS-DVEKQYNQIVATTFNCPYL-SFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELII 292 (317)
Q Consensus 216 ~~-~~~~~~~~~~a~~~~l~~~-~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l 292 (317)
.. ....+++.++++.+++... . +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+
T Consensus 124 ~~~~~~~~~~~~~l~~~~L~~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~ 192 (262)
T 1b0u_A 124 LSKHDARERALKYLAKVGIDERAQ---GKYP--------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHH---TSCG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCchhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 12 2334567788999998532 2 2233 7999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 293 VDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 293 ~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.|+++.+. ..|++..+..++|||
T Consensus 193 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v 223 (262)
T 1b0u_A 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHV 223 (262)
T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHHHHCSEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999998653 567777787788874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=323.13 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=158.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++..
T Consensus 4 ~l~i~~ls~~y~~~-~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~--- 69 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT-PV-----LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIF--- 69 (359)
T ss_dssp CEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEE---
T ss_pred EEEEEeEEEEECCE-EE-----EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECc---
Confidence 79999999999654 34 999999999999999999999999999999999999 99999999998610
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
. . -..... .++ .||||||++.+|+ .+||++|+.++.... .......+++.++++
T Consensus 70 --~------------~-~~~~~~--~~r-------~ig~vfQ~~~l~p-~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~ 124 (359)
T 3fvq_A 70 --S------------K-NTNLPV--RER-------RLGYLVQEGVLFP-HLTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124 (359)
T ss_dssp --S------------S-SCBCCG--GGS-------CCEEECTTCCCCT-TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHH
T ss_pred --c------------c-ccccch--hhC-------CEEEEeCCCcCCC-CCCHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 0 0 011111 122 3999999987654 689999999875432 233455677888999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.+.++.+.
T Consensus 125 ~~gL~~~--~~r~~---------~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi 193 (359)
T 3fvq_A 125 LTGISEL--AGRYP---------HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193 (359)
T ss_dssp HHTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HcCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9998432 23344 7999999999999999999999999999999 9999999999888776543
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 194 ~vTHd~~ea~~~aDri 209 (359)
T 3fvq_A 194 FVSHDREEALQYADRI 209 (359)
T ss_dssp EECCCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHHCCEE
Confidence 667777777778875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=308.71 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=155.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 19 ~~~l~~~~l~~~y~~~-~v-----L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~--- 84 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK-TI-----LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKM--- 84 (279)
T ss_dssp CEEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBC---
T ss_pred CceEEEEeEEEEECCE-EE-----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEE---
Confidence 3479999999999753 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeec--cCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhcc-----CCCChHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKSM-----EGDSDVE 220 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~~-----~~~~~~~ 220 (317)
+. ..+...+++. |||+||++.+ +...+||+||+.++... .......
T Consensus 85 -------------------~~~~~~~~~~~~~~-------i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~ 138 (279)
T 2ihy_A 85 -------------------PGKVGYSAETVRQH-------IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138 (279)
T ss_dssp -------------------CC---CCHHHHHTT-------EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH
T ss_pred -------------------cccccCCHHHHcCc-------EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH
Confidence 33 3344444443 9999999864 33456999999875311 1112334
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 221 KQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 221 ~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+++.++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++
T Consensus 139 ~~~~~~~l~~~gl~~~~---~~~~--------~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 139 RNEAHQLLKLVGMSAKA---QQYI--------GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HHHHHHHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHh---cCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 45677889999874222 2333 7999999999999999999999999999999 9999999999999998
Q ss_pred HHh--------cCCCcchhhcccCCC
Q 021147 300 LEH--------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~--------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+...+|||
T Consensus 208 ~~~g~tv~~iivtHd~~~~~~~~d~v 233 (279)
T 2ihy_A 208 SDSYPTLAMIYVTHFIEEITANFSKI 233 (279)
T ss_dssp HHHCTTCEEEEEESCGGGCCTTCCEE
T ss_pred HHCCCEEEEEEEecCHHHHHHhCCEE
Confidence 643 245566666667764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=317.97 Aligned_cols=194 Identities=14% Similarity=0.176 Sum_probs=158.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~---- 66 (362)
T 2it1_A 2 VEIKLENIVKKFGNF-TA-----LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKD---- 66 (362)
T ss_dssp CCEEEEEEEEESSSS-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEeEEEEECCE-EE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEE----
Confidence 469999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~a 228 (317)
+...+.. ++ .|||+||++.+|+ .+||++|+.++..... ......+++.+++
T Consensus 67 ------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~~v~~~l 118 (362)
T 2it1_A 67 ------------------VTELPPK--DR-------NVGLVFQNWALYP-HMTVYKNIAFPLELRKAPREEIDKKVREVA 118 (362)
T ss_dssp ------------------CTTSCGG--GT-------TEEEECTTCCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------------------CCcCCHh--HC-------cEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3333332 12 3999999987664 6899999998653222 2233456778899
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~~L~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 119 KMLHIDKL--LNRYP---------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp HHTTCTTC--TTCCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHcCCchH--hhCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 99998432 22344 7999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 188 i~vTHd~~~a~~~adri 204 (362)
T 2it1_A 188 VYVTHDQAEALAMADRI 204 (362)
T ss_dssp EEEESCHHHHHHHCSEE
T ss_pred EEECCCHHHHHHhCCEE
Confidence 567777777777764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=305.21 Aligned_cols=194 Identities=15% Similarity=0.144 Sum_probs=155.2
Q ss_pred ceEEEeEEEEcC-CC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 71 LTDAKNKILSYT-PG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 71 ~I~~~nls~~y~-~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
+|+++||+++|+ +. ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~- 70 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA-----LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGER- 70 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-
T ss_pred EEEEEEEEEEecCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEE-
Confidence 699999999996 22 234 999999999999999999999999999999999999 999999999976
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+.. ..++ +.|||+||++..+...+||.+|+.++...........+++.+
T Consensus 71 ---------------------~~~---~~~~-------~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 119 (266)
T 2yz2_A 71 ---------------------KKG---YEIR-------RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119 (266)
T ss_dssp ---------------------CCH---HHHG-------GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHH
T ss_pred ---------------------Cch---HHhh-------hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 221 1222 349999998632223579999998864221111223456778
Q ss_pred HHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++. ... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~l~~~gl~~~~~~---~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 120 AMEFVGLDFDSFK---DRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp HHHHTTCCHHHHT---TCCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCcCCcccc---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence 89999975 332 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 189 ~tii~vtHd~~~~~~~~d~v 208 (266)
T 2yz2_A 189 KTVILISHDIETVINHVDRV 208 (266)
T ss_dssp CEEEEECSCCTTTGGGCSEE
T ss_pred CEEEEEeCCHHHHHHhCCEE
Confidence 677888888888874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=318.04 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=158.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~---- 66 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKV-KA-----VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVL---- 66 (359)
T ss_dssp CCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE----
T ss_pred cEEEEEEEEEEECCE-EE-----EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEE----
Confidence 469999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~a 228 (317)
+...+.. ++ .|||+||++.+|+ .+||++|+.|+....... ....+++.+++
T Consensus 67 ------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~~v~~~l 118 (359)
T 2yyz_A 67 ------------------VNDIPPK--YR-------EVGMVFQNYALYP-HMTVFENIAFPLRARRISKDEVEKRVVEIA 118 (359)
T ss_dssp ------------------CTTSCGG--GT-------TEEEECSSCCCCT-TSCHHHHHHGGGSSSCSHHHHTTHHHHHHH
T ss_pred ------------------CCCCChh--hC-------cEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3333332 22 3999999987664 689999999875332211 22245678899
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 119 ~~~~L~~~--~~r~~---------~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 119 RKLLIDNL--LDRKP---------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp HHTTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHcCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 99998422 22344 6999999999999999999999999999999 9999999999999998653
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 188 i~vTHd~~~~~~~adri 204 (359)
T 2yyz_A 188 VYVTHDQAEAMTMASRI 204 (359)
T ss_dssp EEEESCHHHHHHHCSEE
T ss_pred EEEcCCHHHHHHhCCEE
Confidence 567777777777764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=315.59 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=156.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~----- 63 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKD----- 63 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEE-----
Confidence 58999999999654 4 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+. .++. |||+||++.+|+ .+||++|+.++......... +++.++++.
T Consensus 64 -----------------i~~~~~--~~r~-------ig~v~Q~~~l~~-~ltv~enl~~~~~~~~~~~~--~~v~~~l~~ 114 (348)
T 3d31_A 64 -----------------VTDLSP--EKHD-------IAFVYQNYSLFP-HMNVKKNLEFGMRMKKIKDP--KRVLDTARD 114 (348)
T ss_dssp -----------------CTTSCH--HHHT-------CEEECTTCCCCT-TSCHHHHHHHHHHHHCCCCH--HHHHHHHHH
T ss_pred -----------------CCCCch--hhCc-------EEEEecCcccCC-CCCHHHHHHHHHHHcCCCHH--HHHHHHHHH
Confidence 333332 2333 999999987654 68999999986432111111 667889999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~L~~~--~~~~~---------~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 115 LKIEHL--LDRNP---------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp TTCTTT--TTSCG---------GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 998422 22333 7999999999999999999999999999999 9999999999999998653
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 184 vTHd~~~~~~~adri 198 (348)
T 3d31_A 184 ITHDQTEARIMADRI 198 (348)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 467777777777764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=316.54 Aligned_cols=195 Identities=13% Similarity=0.134 Sum_probs=159.4
Q ss_pred CCceEEEeEEEEc-CCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y-~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.++|+++||+++| ++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 12 ~~~l~~~~l~~~y~g~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~-- 78 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA-RS-----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKR-- 78 (355)
T ss_dssp CEEEEEEEEEECCTTST-TC-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE--
T ss_pred CceEEEEEEEEEEcCCC-EE-----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEE--
Confidence 3579999999999 543 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~ 226 (317)
+...+.. ++ .|||+||++.+|+ .+||++|+.|+..... ......+++.+
T Consensus 79 --------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~l~~~~~~~~~~~~~v~~ 128 (355)
T 1z47_A 79 --------------------VTDLPPQ--KR-------NVGLVFQNYALFQ-HMTVYDNVSFGLREKRVPKDEMDARVRE 128 (355)
T ss_dssp --------------------CTTCCGG--GS-------SEEEECGGGCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --------------------CCcCChh--hC-------cEEEEecCcccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333221 22 3999999987654 6899999998653322 22334567888
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~l~~~gL~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 197 (355)
T 1z47_A 129 LLRFMRLESY--ANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197 (355)
T ss_dssp HHHHTTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCChhH--hcCCc---------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999998422 22344 7999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+...+..++|||
T Consensus 198 tvi~vTHd~~~a~~~adri 216 (355)
T 1z47_A 198 TSVFVTHDQEEALEVADRV 216 (355)
T ss_dssp EEEEECSCHHHHHHHCSEE
T ss_pred EEEEECCCHHHHHHhCCEE
Confidence 567777777778774
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=308.48 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=155.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+|+|++...+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 65 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQP----- 65 (243)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEE-----
T ss_pred CEEEEEEEEEeCCCCce-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEE-----
Confidence 58999999999533334 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+...++++ |||+||++.+|. .||++|+.++... .. ..+++.++++.
T Consensus 66 -----------------~~~~~~~~~~~~-------i~~v~q~~~l~~--~tv~enl~~~~~~-~~---~~~~~~~~l~~ 115 (243)
T 1mv5_A 66 -----------------IDNISLENWRSQ-------IGFVSQDSAIMA--GTIRENLTYGLEG-DY---TDEDLWQVLDL 115 (243)
T ss_dssp -----------------STTTSCSCCTTT-------CCEECCSSCCCC--EEHHHHTTSCTTS-CS---CHHHHHHHHHH
T ss_pred -----------------hhhCCHHHHHhh-------EEEEcCCCcccc--ccHHHHHhhhccC-CC---CHHHHHHHHHH
Confidence 333332223333 999999998775 4999999875211 11 13446778888
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+++. ...++.++.+.+...+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~--~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~ 193 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERG--VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTS--BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE
T ss_pred hChHHHHHhCccchhchhccCc--CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8874 2223445555555554 7999999999999999999999999999999 9999999999999987521
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 194 vtH~~~~~~-~~d~v 207 (243)
T 1mv5_A 194 IAHRLSTIV-DADKI 207 (243)
T ss_dssp ECCSHHHHH-HCSEE
T ss_pred EeCChHHHH-hCCEE
Confidence 456666554 36654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=302.59 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=157.2
Q ss_pred CCceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..+|+++||+|+|++. ..+ |++|||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|++
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~- 82 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRT-----LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKN- 82 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEE-
T ss_pred CCeEEEEEEEEEeCCCCcCce-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEE-
Confidence 3579999999999753 233 999999999999999999999999999999999998 8 7999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+...+...+++. |||+||++.+|. .||++|+.++... . ..+++.+
T Consensus 83 ---------------------i~~~~~~~~~~~-------i~~v~Q~~~l~~--~tv~enl~~~~~~--~---~~~~~~~ 127 (260)
T 2ghi_A 83 ---------------------VNKYNRNSIRSI-------IGIVPQDTILFN--ETIKYNILYGKLD--A---TDEEVIK 127 (260)
T ss_dssp ---------------------GGGBCHHHHHTT-------EEEECSSCCCCS--EEHHHHHHTTCTT--C---CHHHHHH
T ss_pred ---------------------hhhcCHHHHhcc-------EEEEcCCCcccc--cCHHHHHhccCCC--C---CHHHHHH
Confidence 444554445444 999999998775 4999999875321 1 1234667
Q ss_pred HHHHcCCCc--ccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCPY--LSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~~--~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++.. ..+++++.+.+...+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 128 ~l~~~~l~~~~~~l~~~~~~~~~~~~--~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~ 205 (260)
T 2ghi_A 128 ATKSAQLYDFIEALPKKWDTIVGNKG--MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR 205 (260)
T ss_dssp HHHHTTCHHHHHTSTTGGGCEESSSS--BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCCHHHHHhccccccccccCCc--CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC
Confidence 777777631 124445555554444 7999999999999999999999999999999 9999999999999987531
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+.. +|||
T Consensus 206 tviivtH~~~~~~~-~d~i 223 (260)
T 2ghi_A 206 TLIIIAHRLSTISS-AESI 223 (260)
T ss_dssp EEEEECSSGGGSTT-CSEE
T ss_pred EEEEEcCCHHHHHh-CCEE
Confidence 5666666653 6764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=296.57 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=154.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++ .+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~--- 72 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVP--- 72 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEE---
Confidence 358999999999975 44 999999999999999999999999999999999999 999999999976
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+. .++ +.|+|+||++.++ ..+||.+|+.++......... .+++.+++
T Consensus 73 -------------------~~-----~~~-------~~i~~v~q~~~~~-~~~tv~enl~~~~~~~~~~~~-~~~~~~~l 119 (214)
T 1sgw_A 73 -------------------IT-----KVK-------GKIFFLPEEIIVP-RKISVEDYLKAVASLYGVKVN-KNEIMDAL 119 (214)
T ss_dssp -------------------GG-----GGG-------GGEEEECSSCCCC-TTSBHHHHHHHHHHHTTCCCC-HHHHHHHH
T ss_pred -------------------hh-----hhc-------CcEEEEeCCCcCC-CCCCHHHHHHHHHHhcCCchH-HHHHHHHH
Confidence 32 122 2399999998765 457999999876422111112 45677889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.. . +... .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 120 ~~~gl~~--~--~~~~--------~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 120 ESVEVLD--L--KKKL--------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp HHTTCCC--T--TSBG--------GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred HHcCCCc--C--CCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 9988742 1 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
+.|++..+..++|+|
T Consensus 188 ivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 188 ISSREELSYCDVNENL 203 (214)
T ss_dssp EEESSCCTTSSEEEEG
T ss_pred EEeCCHHHHHHhCCEE
Confidence 577888888888764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=360.65 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=199.3
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCCC--ccccccCceeeeeEe
Q 021147 32 GDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDV 100 (317)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I 100 (317)
.+.......|..+..+..+..|+.++++.+++... ...+.|+++||+|+|++.. .+ |+||||+|
T Consensus 339 ~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v-----L~~isl~i 413 (1284)
T 3g5u_A 339 FSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI-----LKGLNLKV 413 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS-----EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc-----eecceEEE
Confidence 45566677888899999999999999987654321 1234699999999997532 33 99999999
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
++||++|||||||||||||+++|.|+++ |++|+|.+||++ ++.++...+|++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~----------------------i~~~~~~~~r~~- 465 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQD----------------------IRTINVRYLREI- 465 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEE----------------------GGGSCHHHHHHH-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEE----------------------HHhCCHHHHHhh-
Confidence 9999999999999999999999999999 999999999987 777888888887
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
||||||++.+|+. ||+||+.++.... ..+++.++++.++++ +..+++|+.+.+++.| .+||||
T Consensus 466 ------i~~v~Q~~~l~~~--ti~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g--~~LSgG 530 (1284)
T 3g5u_A 466 ------IGVVSQEPVLFAT--TIAENIRYGREDV-----TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG--AQLSGG 530 (1284)
T ss_dssp ------EEEECSSCCCCSS--CHHHHHHHHCSSC-----CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS--CSSCHH
T ss_pred ------eEEEcCCCccCCc--cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHhccccccccccCCC--CccCHH
Confidence 9999999998865 9999999875422 234577888888874 4457889999999998 899999
Q ss_pred HHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----cCCCcchhhcccCCC
Q 021147 259 ARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 259 ~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
||||++||||++++|+++||||||+ ||+.++..+.+.++++.+. ..|+++.+.. +|||
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i 594 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVI 594 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 9999999999999999999999999 9999999999999886532 4567776655 6764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=318.45 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=158.5
Q ss_pred CceEEEeEEEEcCCCCc-cccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~-~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+|+++||+++|++... + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~l~i~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~--- 68 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKGKVVA-----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRL--- 68 (353)
T ss_dssp CCEEEEEEEEEEGGGTEEE-----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred cEEEEEeEEEEECCEeeee-----EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEE---
Confidence 47999999999965321 4 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeecc-----CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRR-----SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQ 222 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~-----~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~ 222 (317)
+.. .+. .++ .|||+||++.+|+ .+||++|+.++....... ....+
T Consensus 69 -------------------i~~~~~~~~~~--~~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~ 119 (353)
T 1oxx_K 69 -------------------VASNGKLIVPP--EDR-------KIGMVFQTWALYP-NLTAFENIAFPLTNMKMSKEEIRK 119 (353)
T ss_dssp -------------------EEETTEESSCG--GGS-------CEEEEETTSCCCT-TSCHHHHHHGGGTTSSCCHHHHHH
T ss_pred -------------------CcccccccCCh--hhC-------CEEEEeCCCccCC-CCCHHHHHHHHHHHcCCCHHHHHH
Confidence 222 222 122 3999999987654 689999999875432222 33456
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 120 ~v~~~l~~~~L~~~--~~~~~---------~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 120 RVEEVAKILDIHHV--LNHFP---------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp HHHHHHHHTTCGGG--TTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchH--hcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 77889999998422 22344 7999999999999999999999999999999 999999999999999865
Q ss_pred h-------cCCCcchhhcccCCC
Q 021147 302 H-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+..++|||
T Consensus 189 ~~g~tvi~vTHd~~~~~~~adri 211 (353)
T 1oxx_K 189 RLGVTLLVVSHDPADIFAIADRV 211 (353)
T ss_dssp HHCCEEEEEESCHHHHHHHCSEE
T ss_pred hcCCEEEEEeCCHHHHHHhCCEE
Confidence 3 567777777777774
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=317.49 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=158.2
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~---- 66 (372)
T 1g29_1 2 AGVRLVDVWKVFGEV-TA-----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKL---- 66 (372)
T ss_dssp EEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE----
T ss_pred CEEEEEeEEEEECCE-EE-----EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEE----
Confidence 469999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eEecccCCCCcccccceeecc------CChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRR------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQ 222 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~ 222 (317)
+.. .+.. ++ .||||||++.+|+ .+||++|+.|+..... ......+
T Consensus 67 ------------------~~~~~~~~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~ 118 (372)
T 1g29_1 67 ------------------VADPEKGIFVPPK--DR-------DIAMVFQSYALYP-HMTVYDNIAFPLKLRKVPRQEIDQ 118 (372)
T ss_dssp ------------------EEEGGGTEECCGG--GS-------SEEEECSCCCCCT-TSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred ------------------CccccccccCCHh--HC-------CEEEEeCCCccCC-CCCHHHHHHHHHHHcCCCHHHHHH
Confidence 222 2221 22 3999999987654 6899999998753322 2233456
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++.++++.+++... .+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 119 ~v~~~l~~~~L~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 119 RVREVAELLGLTEL--LNRKP---------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HHHHHHHHHTCGGG--TTCCG---------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchH--hcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 67889999998422 22344 7999999999999999999999999999999 999999999999999865
Q ss_pred h-------cCCCcchhhcccCCC
Q 021147 302 H-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ~-------~~~~~~~~~~~~~~~ 317 (317)
. ..|++..+..++|||
T Consensus 188 ~~g~tvi~vTHd~~~a~~~adri 210 (372)
T 1g29_1 188 QLGVTTIYVTHDQVEAMTMGDRI 210 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEE
T ss_pred hcCCEEEEECCCHHHHHHhCCEE
Confidence 3 567777777777764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=305.43 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=148.8
Q ss_pred CCceEEEeEEEEcCCC--CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~--~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.++|+++||+|+|++. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~- 82 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV-----LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEP- 82 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-
T ss_pred CceEEEEEEEEEeCCCCCcee-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEE-
Confidence 3579999999999751 334 999999999999999999999999999999999999 999999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHH-----
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK----- 221 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~----- 221 (317)
+...+...+++. |||+||++.+|. .||++|+.++...........
T Consensus 83 ---------------------i~~~~~~~~~~~-------i~~v~Q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~ 132 (271)
T 2ixe_A 83 ---------------------LVQYDHHYLHTQ-------VAAVGQEPLLFG--RSFRENIAYGLTRTPTMEEITAVAME 132 (271)
T ss_dssp ---------------------GGGBCHHHHHHH-------EEEECSSCCCCS--SBHHHHHHTTCSSCCCHHHHHHHHHH
T ss_pred ---------------------cccCCHHHHhcc-------EEEEecCCcccc--ccHHHHHhhhcccCChHHHHHHHHHH
Confidence 444555555555 999999998775 499999998643211101100
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..+.++++.+. .+....+.... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 133 ~~~~~~l~~l~-------~gl~~~~~~~~--~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 133 SGAHDFISGFP-------QGYDTEVGETG--NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp HTCHHHHHHST-------TGGGSBCCGGG--TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred HhHHHHHHhhh-------cchhhhhcCCc--CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 11122333331 11111111111 7999999999999999999999999999999 99999999999999875
Q ss_pred Hh-------cCCCcchhhcccCCC
Q 021147 301 EH-------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~-------~~~~~~~~~~~~~~~ 317 (317)
+. ..|++..+.. +|||
T Consensus 204 ~~~g~tviivtHd~~~~~~-~d~v 226 (271)
T 2ixe_A 204 EWASRTVLLITQQLSLAER-AHHI 226 (271)
T ss_dssp TTTTSEEEEECSCHHHHTT-CSEE
T ss_pred hhcCCEEEEEeCCHHHHHh-CCEE
Confidence 31 4566666654 6664
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=317.96 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=154.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 9 M~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~--- 74 (372)
T 1v43_A 9 MVEVKLENLTKRFGNF-TA-----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRD--- 74 (372)
T ss_dssp CCCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred eeeEEEEEEEEEECCE-EE-----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEE---
Confidence 4579999999999653 34 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~ 227 (317)
+...+.. ++ .||||||++.+|+ .+||++|+.|+....... ....+++.++
T Consensus 75 -------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~eni~~~~~~~~~~~~~~~~~v~~~ 125 (372)
T 1v43_A 75 -------------------VTYLPPK--DR-------NISMVFQSYAVWP-HMTVYENIAFPLKIKKFPKDEIDKRVRWA 125 (372)
T ss_dssp -------------------CTTSCGG--GG-------TEEEEEC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHH
T ss_pred -------------------CCCCChh--hC-------cEEEEecCcccCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3333332 22 3999999987664 689999999864322222 2345667889
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++... .+.++ .+||||||||++|||||+.+|+++|||||++ ||+.++..+.+.|+++.+.
T Consensus 126 l~~~~L~~~--~~r~~---------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 126 AELLQIEEL--LNRYP---------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHTTCGGG--TTSCT---------TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHcCChhH--hcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 999998422 22344 6999999999999999999999999999999 9999999999999998653
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 195 vi~vTHd~~~a~~~adri 212 (372)
T 1v43_A 195 TIYVTHDQVEAMTMGDRI 212 (372)
T ss_dssp EEEEESCHHHHHHHCSEE
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 567777777777774
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=299.26 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=150.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccCc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.+|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~-- 68 (250)
T 2d2e_A 2 SQLEIRDLWASIDGE-TI-----LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGEN-- 68 (250)
T ss_dssp CEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE--
T ss_pred ceEEEEeEEEEECCE-EE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEE--
Confidence 479999999999653 34 9999999999999999999999999999999999 78 999999999986
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc--cCC--CChHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS--MEG--DSDVEKQY 223 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~--~~~--~~~~~~~~ 223 (317)
+...+....++ ..++|++|++.+++ .+|+.+|+.+... ... ......++
T Consensus 69 --------------------~~~~~~~~~~~------~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 2d2e_A 69 --------------------ILELSPDERAR------KGLFLAFQYPVEVP-GVTIANFLRLALQAKLGREVGVAEFWTK 121 (250)
T ss_dssp --------------------CTTSCHHHHHH------TTBCCCCCCCC-CC-SCBHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred --------------------CCCCCHHHHHh------CcEEEeccCCcccc-CCCHHHHHHHHHHhhccccCCHHHHHHH
Confidence 44444333221 23899999987654 5799999987531 111 11223456
Q ss_pred HHHHHHHcCCC-cccCCCCCCEEEEeccchhc-CcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCP-YLSFRDDKPVVVVTHGDLLS-LTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~-~~~l~~~~~~~i~~hg~~~~-LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.++++.++++ ... +..+ .+ ||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.
T Consensus 122 ~~~~l~~~gl~~~~~---~~~~--------~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 122 VKKALELLDWDESYL---SRYL--------NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HHHHHHHHTCCGGGG---GSBT--------TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHh---cCCc--------ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 77888998873 221 2222 56 99999999999999999999999999999 99999999999999985
Q ss_pred Hh------cCCCcchhhcc-cCCC
Q 021147 301 EH------ADRNLSCKSCA-RNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~-~~~~ 317 (317)
+. ..|++..+..+ +|||
T Consensus 191 ~~g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 191 GPNFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp STTCEEEEECSSSGGGGTSCCSEE
T ss_pred hcCCEEEEEecCHHHHHHhcCCEE
Confidence 32 56777777766 4764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=298.10 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=152.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|++ . |+||||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~----- 61 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGAD----- 61 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEE-----
Confidence 5899999999953 3 9999999999 9999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..... .+ +.|||+||++.+++ .+||++|+.++..... .....+++.++++.
T Consensus 62 -----------------~~~~~~--~~-------~~i~~v~q~~~l~~-~ltv~enl~~~~~~~~-~~~~~~~~~~~l~~ 113 (240)
T 2onk_A 62 -----------------ITPLPP--ER-------RGIGFVPQDYALFP-HLSVYRNIAYGLRNVE-RVERDRRVREMAEK 113 (240)
T ss_dssp -----------------CTTSCT--TT-------SCCBCCCSSCCCCT-TSCHHHHHHTTCTTSC-HHHHHHHHHHHHHT
T ss_pred -----------------CCcCch--hh-------CcEEEEcCCCccCC-CCcHHHHHHHHHHHcC-CchHHHHHHHHHHH
Confidence 222111 12 23999999987554 6799999987542211 12224567788888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++... . +... .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 114 ~~l~~~--~-~~~~--------~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 114 LGIAHL--L-DRKP--------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp TTCTTT--T-TCCG--------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cCCHHH--h-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 887422 1 2233 7999999999999999999999999999999 9999999999999998643
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+...+|||
T Consensus 183 vtHd~~~~~~~~d~i 197 (240)
T 2onk_A 183 VTHDLIEAAMLADEV 197 (240)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 567777777777764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=293.73 Aligned_cols=186 Identities=14% Similarity=0.129 Sum_probs=154.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++ .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|++
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~----- 62 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQP----- 62 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEE-----
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEE-----
Confidence 6999999986 23 999999999999999999999999999999999999 99 999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..++...+++. +||+||++.++ ..+||++|+.++..... . .+++.++++.
T Consensus 63 -----------------~~~~~~~~~~~~-------i~~v~q~~~~~-~~~tv~e~l~~~~~~~~--~--~~~~~~~l~~ 113 (249)
T 2qi9_C 63 -----------------LEAWSATKLALH-------RAYLSQQQTPP-FATPVWHYLTLHQHDKT--R--TELLNDVAGA 113 (249)
T ss_dssp -----------------GGGSCHHHHHHH-------EEEECSCCCCC-TTCBHHHHHHTTCSSTT--C--HHHHHHHHHH
T ss_pred -----------------CCcCCHHHHhce-------EEEECCCCccC-CCCcHHHHHHHhhccCC--c--HHHHHHHHHH
Confidence 445565556655 99999998755 35799999987632111 1 4567888999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc-------eeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA-------KQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~-------ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.... +... .+||||||||++|||||+.+|+ ++||||||+ ||+.++..+.+.|+++.+.
T Consensus 114 ~~l~~~~---~~~~--------~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 114 LALDDKL---GRST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp TTCGGGT---TSBG--------GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCChhHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 9974222 2233 7999999999999999999999 999999999 9999999999999998643
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 183 g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 183 GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp TCEEEEECSCHHHHHHHCSEE
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 567777777777764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=290.97 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=148.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++|+++..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+..
T Consensus 4 ~l~i~~l~~~y~~~~~v-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~~------- 66 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFL-----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEVYQ------- 66 (253)
T ss_dssp EEEEEEEEEEETTTTEE-----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEECS-------
T ss_pred eEEEeeEEEEeCCCCeE-----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEec-------
Confidence 79999999999723344 999999999999999999999999999999999999 9999998211
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-c-C---CCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-M-E---GDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~-~---~~~~~~~~~~~ 225 (317)
.|||+||++.++. .+||.+|+.++.. . . .......+++.
T Consensus 67 -----------------------------------~i~~v~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 67 -----------------------------------SIGFVPQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp -----------------------------------CEEEECSCCCCSS-CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred -----------------------------------cEEEEcCCCccCC-CCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 1888888876553 5699999988642 1 1 11233456678
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++.... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 111 ~~l~~~~l~~~~---~~~~--------~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g 179 (253)
T 2nq2_C 111 QALDYLNLTHLA---KREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179 (253)
T ss_dssp HHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCChHHh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 889999874222 2233 7999999999999999999999999999999 9999999999999998653
Q ss_pred -----cCCCcchhhcccCCC
Q 021147 303 -----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -----~~~~~~~~~~~~~~~ 317 (317)
+.|++..+...+|||
T Consensus 180 ~tvi~vtHd~~~~~~~~d~v 199 (253)
T 2nq2_C 180 MTVVFTTHQPNQVVAIANKT 199 (253)
T ss_dssp CEEEEEESCHHHHHHHCSEE
T ss_pred CEEEEEecCHHHHHHhCCEE
Confidence 567777777777764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=293.73 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=152.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc--ccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl--~~p~~~~p~~G~I~i~g~~~ 146 (317)
+++|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 18 ~~~l~~~~l~~~y~~~-~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~- 85 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDK-AI-----LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD- 85 (267)
T ss_dssp --CEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE-
T ss_pred CceEEEEeEEEEECCE-EE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEE-
Confidence 4589999999999643 34 9999999999999999999999999999999999 56 899999999986
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-c----cCC---CCh
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-S----MEG---DSD 218 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~----~~~---~~~ 218 (317)
+...+....++ ..|+|++|++.+++ .+|+.+|+.+.. . ... ...
T Consensus 86 ---------------------i~~~~~~~~~~------~~i~~v~Q~~~l~~-~~tv~e~~~~~~~~~~~~~~~~~~~~~ 137 (267)
T 2zu0_C 86 ---------------------LLALSPEDRAG------EGIFMAFQYPVEIP-GVSNQFFLQTALNAVRSYRGQETLDRF 137 (267)
T ss_dssp ---------------------GGGSCHHHHHH------HTEEEECSSCCCCT-TCBHHHHHHHHHHHHHHGGGCCCCCHH
T ss_pred ---------------------CCcCCHHHHhh------CCEEEEccCccccc-cccHHHHHHHHHHhhhhhhccccCCHH
Confidence 44444433221 13999999987654 578999987642 1 111 112
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchh-cCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL-SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML 296 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~-~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l 296 (317)
...+++.++++.+++... +. +... . +||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|
T Consensus 138 ~~~~~~~~~l~~~gl~~~-~~-~~~~--------~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l 207 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPED-LL-TRSV--------NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207 (267)
T ss_dssp HHHHHHHHHHHHTTCCTT-TT-TSBT--------TTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChh-Hh-cCCc--------ccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 234567788899887411 11 2222 3 599999999999999999999999999999 9999999999999
Q ss_pred HHHHHh------cCCCcchhhcc-cCCC
Q 021147 297 RYCLEH------ADRNLSCKSCA-RNKV 317 (317)
Q Consensus 297 ~~l~~~------~~~~~~~~~~~-~~~~ 317 (317)
+++.+. ..|++..+... +|||
T Consensus 208 ~~l~~~g~tviivtHd~~~~~~~~~d~v 235 (267)
T 2zu0_C 208 NSLRDGKRSFIIVTHYQRILDYIKPDYV 235 (267)
T ss_dssp HTTCCSSCEEEEECSSGGGGGTSCCSEE
T ss_pred HHHHhcCCEEEEEeeCHHHHHhhcCCEE
Confidence 887432 46677777665 6764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=308.65 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=159.5
Q ss_pred CCCceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 68 IGSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
..+.|+++||+|+|+. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|++
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~- 83 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAI-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVS- 83 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCB-
T ss_pred CCCeEEEEEEEEEecCCCeEE-----eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEE-
Confidence 3467999999999953 3333 999999999999999999999999999999999975 47999999987
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+..++...+++. ||||||++.+|+ +||++|+.+... ...+++.+
T Consensus 84 ---------------------i~~~~~~~~rr~-------ig~v~Q~~~lf~--~tv~enl~~~~~------~~~~~v~~ 127 (390)
T 3gd7_A 84 ---------------------WDSITLEQWRKA-------FGVIPQKVFIFS--GTFRKNLDPNAA------HSDQEIWK 127 (390)
T ss_dssp ---------------------TTSSCHHHHHHT-------EEEESCCCCCCS--EEHHHHHCTTCC------SCHHHHHH
T ss_pred ---------------------CCcCChHHHhCC-------EEEEcCCcccCc--cCHHHHhhhccc------cCHHHHHH
Confidence 556676666665 999999998886 599999974321 12345778
Q ss_pred HHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 227 VATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 227 ~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
+++.+++. ...++..+.+.+.+.+ ..||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++...
T Consensus 128 ~l~~~~L~~~~~~~p~~l~~~i~~~g--~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~ 205 (390)
T 3gd7_A 128 VADEVGLRSVIEQFPGKLDFVLVDGG--CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC 205 (390)
T ss_dssp HHHHTTCHHHHTTSTTGGGCEECTTT--TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhCCHHHHhhccccccccccccc--ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCC
Confidence 89999984 2335556677777777 7899999999999999999999999999999 9999999999999875321
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+. .+|||
T Consensus 206 tvi~vtHd~e~~~-~aDri 223 (390)
T 3gd7_A 206 TVILCEARIEAML-ECDQF 223 (390)
T ss_dssp CEEEECSSSGGGT-TCSEE
T ss_pred EEEEEEcCHHHHH-hCCEE
Confidence 344444333 36654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=288.60 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=138.5
Q ss_pred CceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+|+++||+++|++ ...+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~---- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSDPPT-----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS---- 67 (237)
T ss_dssp CCEEEEEEEEESCTTSCCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC----
T ss_pred CeEEEEEEEEEeCCCCCce-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE----
Confidence 47999999999974 2334 999999999999999999999999999999999999 99999998873
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|||+||++.++ .+||++|+.++.... .. ...+++
T Consensus 68 --------------------------------------i~~v~Q~~~~~--~~tv~enl~~~~~~~--~~----~~~~~~ 101 (237)
T 2cbz_A 68 --------------------------------------VAYVPQQAWIQ--NDSLRENILFGCQLE--EP----YYRSVI 101 (237)
T ss_dssp --------------------------------------EEEECSSCCCC--SEEHHHHHHTTSCCC--TT----HHHHHH
T ss_pred --------------------------------------EEEEcCCCcCC--CcCHHHHhhCccccC--HH----HHHHHH
Confidence 78888887543 569999998764321 11 123344
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH---HHHH-
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR---YCLE- 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~---~l~~- 301 (317)
+.+++. ...++.++.+.+.... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.+. ++.+
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~--~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~ 179 (237)
T 2cbz_A 102 QACALLPDLEILPSGDRTEIGEKG--VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN 179 (237)
T ss_dssp HHTTCHHHHTTSTTGGGSEESTTS--BCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTT
T ss_pred HHHhhHHHHHhccccccccccCCC--CCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCC
Confidence 444331 0112222222222222 7999999999999999999999999999999 99999999999884 3221
Q ss_pred ----hcCCCcchhhcccCCC
Q 021147 302 ----HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 ----~~~~~~~~~~~~~~~~ 317 (317)
...|++..+. .+|||
T Consensus 180 ~tviivtH~~~~~~-~~d~v 198 (237)
T 2cbz_A 180 KTRILVTHSMSYLP-QVDVI 198 (237)
T ss_dssp SEEEEECSCSTTGG-GSSEE
T ss_pred CEEEEEecChHHHH-hCCEE
Confidence 1456666654 46764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=350.08 Aligned_cols=231 Identities=16% Similarity=0.170 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcccccccc---------CCCCceEEEeEEEEcCCCC--ccccccCceeeeeEecCCCEEEE
Q 021147 40 SWDSLVDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLL 108 (317)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~I~~~nls~~y~~~~--~~~~~~~L~~isl~I~~Ge~vaI 108 (317)
.+..+.++..+..|+.++++.+++... ...+.|+++||+|+|++.. .+ |+||||+|++||++||
T Consensus 990 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~-----l~~vsl~i~~Ge~v~i 1064 (1284)
T 3g5u_A 990 FAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV-----LQGLSLEVKKGQTLAL 1064 (1284)
T ss_dssp SSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS-----BSSCCEEECSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee-----ecceeEEEcCCCEEEE
Confidence 344455677888999999876654322 1234699999999997532 23 9999999999999999
Q ss_pred EcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc
Q 021147 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG 188 (317)
Q Consensus 109 vG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig 188 (317)
+||||||||||+++|.|+++ |++|+|.+||++ ++.++.+.+|++ |+
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~-----p~~G~I~i~g~~----------------------i~~~~~~~~r~~-------i~ 1110 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYD-----PMAGSVFLDGKE----------------------IKQLNVQWLRAQ-------LG 1110 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSC-----CSEEEEESSSSC----------------------TTSSCHHHHTTS-------CE
T ss_pred ECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEE----------------------cccCCHHHHHhc-------eE
Confidence 99999999999999999999 999999999987 666777777666 99
Q ss_pred ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 189 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 189 ~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
||||++.+|. .||+||+.++...... ..+++.++++.++++ ...+++|+++.++++| .+||||||||++||
T Consensus 1111 ~v~Q~~~l~~--~ti~eNi~~~~~~~~~---~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G--~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1111 IVSQEPILFD--CSIAENIAYGDNSRVV---SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG--TQLSGGQKQRIAIA 1183 (1284)
T ss_dssp EEESSCCCCS--SBHHHHHTCCCSSCCC---CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS--CSSCHHHHHHHHHH
T ss_pred EECCCCcccc--ccHHHHHhccCCCCCC---CHHHHHHHHHHhCcHHHHHhCccccccccCCCC--CccCHHHHHHHHHH
Confidence 9999998775 4999999986543221 233467778888874 4457889999999998 89999999999999
Q ss_pred ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hcCCCcchhhcccCCC
Q 021147 267 ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 267 ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~~~~~~~~~~~~~~~ 317 (317)
||++++|+++||||||+ ||+.+++.+++.++++.+ ...|+++.+.. +|||
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri 1239 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLI 1239 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEE
Confidence 99999999999999999 999999999999988643 14667777654 7774
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=284.29 Aligned_cols=185 Identities=15% Similarity=0.160 Sum_probs=138.0
Q ss_pred CceEEEeEEEEcCC-CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 70 ~~I~~~nls~~y~~-~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+|+++||+++|++ ...+ |++|||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 5 ~~l~~~~l~~~y~~~~~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~---- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 70 (229)
T ss_dssp EEEEEEEEEECSSTTSCCS-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC----
T ss_pred ceEEEEEEEEEeCCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE----
Confidence 47999999999963 3334 999999999999999999999999999999999999 99999998773
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|+|+||++.+++ .||++|+.++... .. .+..+++
T Consensus 71 --------------------------------------i~~v~q~~~~~~--~tv~enl~~~~~~---~~---~~~~~~~ 104 (229)
T 2pze_A 71 --------------------------------------ISFCSQFSWIMP--GTIKENIIFGVSY---DE---YRYRSVI 104 (229)
T ss_dssp --------------------------------------EEEECSSCCCCS--BCHHHHHHTTSCC---CH---HHHHHHH
T ss_pred --------------------------------------EEEEecCCcccC--CCHHHHhhccCCc---Ch---HHHHHHH
Confidence 888888887665 3999999875321 11 1233444
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH-HHHHH---
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML-RYCLE--- 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l-~~l~~--- 301 (317)
+.+++. ...++.+..+.+.+.+ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.+ +++.+
T Consensus 105 ~~~~l~~~~~~~~~~~~~~~~~~~--~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~t 182 (229)
T 2pze_A 105 KACQLEEDISKFAEKDNIVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182 (229)
T ss_dssp HHTTCHHHHTTSTTGGGSCBCTTC--TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSE
T ss_pred HHhCcHHHHHhCcccccccccCCC--CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCE
Confidence 555542 1112222222222222 6999999999999999999999999999999 9999999999863 44322
Q ss_pred --hcCCCcchhhcccCCC
Q 021147 302 --HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 --~~~~~~~~~~~~~~~~ 317 (317)
...|++..+. .+|||
T Consensus 183 vi~vtH~~~~~~-~~d~v 199 (229)
T 2pze_A 183 RILVTSKMEHLK-KADKI 199 (229)
T ss_dssp EEEECCCHHHHH-HCSEE
T ss_pred EEEEcCChHHHH-hCCEE
Confidence 1455555554 36653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=287.18 Aligned_cols=186 Identities=15% Similarity=0.208 Sum_probs=149.6
Q ss_pred ceEEEeEEEEcCCC---CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 71 ~I~~~nls~~y~~~---~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
||+++||+++|++. ..+ |+++||+|+ |++++|+||||||||||+|+|+|++ | ++|+|.++|++
T Consensus 1 ml~~~~l~~~y~~~~~~~~i-----l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----~~G~I~~~g~~-- 66 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS-----LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----YSGNIFINGME-- 66 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE-----EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----CEEEEEETTEE--
T ss_pred CEEEEEEEEEeCCCCcccee-----EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----CCcEEEECCEE--
Confidence 58999999999641 334 999999999 9999999999999999999999998 4 58999999976
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc-ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig-~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
+... . . ++ .+| |+||++.+ .+|+.+|+.+...... ...+++.+
T Consensus 67 --------------------~~~~-~-~-~~-------~i~~~v~Q~~~l---~~tv~enl~~~~~~~~---~~~~~~~~ 110 (263)
T 2pjz_A 67 --------------------VRKI-R-N-YI-------RYSTNLPEAYEI---GVTVNDIVYLYEELKG---LDRDLFLE 110 (263)
T ss_dssp --------------------GGGC-S-C-CT-------TEEECCGGGSCT---TSBHHHHHHHHHHHTC---CCHHHHHH
T ss_pred --------------------Ccch-H-H-hh-------heEEEeCCCCcc---CCcHHHHHHHhhhhcc---hHHHHHHH
Confidence 2221 1 1 22 399 99999875 6799999987643221 12345778
Q ss_pred HHHHcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH---
Q 021147 227 VATTFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE--- 301 (317)
Q Consensus 227 ~a~~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~--- 301 (317)
+++.+++. ... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+
T Consensus 111 ~l~~~gl~~~~~---~~~~--------~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tvi 179 (263)
T 2pjz_A 111 MLKALKLGEEIL---RRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGI 179 (263)
T ss_dssp HHHHTTCCGGGG---GSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEE
T ss_pred HHHHcCCChhHh---cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEE
Confidence 89999875 332 2333 7999999999999999999999999999999 999999999999988632
Q ss_pred hcCCCcchhhcccC-CC
Q 021147 302 HADRNLSCKSCARN-KV 317 (317)
Q Consensus 302 ~~~~~~~~~~~~~~-~~ 317 (317)
...|++..+...+| ||
T Consensus 180 ivtHd~~~~~~~~d~~i 196 (263)
T 2pjz_A 180 LVTHELDMLNLYKEYKA 196 (263)
T ss_dssp EEESCGGGGGGCTTSEE
T ss_pred EEEcCHHHHHHhcCceE
Confidence 35778888877787 64
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=275.46 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=123.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.+ . .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 38 ~~~l~~~~l~~~~--~-~v-----l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~---- 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T-PV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 100 (290)
T ss_dssp ------------C--C-CS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCSC----
T ss_pred CceEEEEEEEEcC--c-eE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCE----
Confidence 3579999999864 2 33 999999999999999999999999999999999999 99999997763
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
|+|+||++.+++ .||++|+. +... .. .+..+++
T Consensus 101 --------------------------------------i~~v~Q~~~l~~--~tv~enl~-~~~~---~~---~~~~~~~ 133 (290)
T 2bbs_A 101 --------------------------------------ISFCSQNSWIMP--GTIKENII-GVSY---DE---YRYRSVI 133 (290)
T ss_dssp --------------------------------------EEEECSSCCCCS--SBHHHHHH-TTCC---CH---HHHHHHH
T ss_pred --------------------------------------EEEEeCCCccCc--ccHHHHhh-Cccc---ch---HHHHHHH
Confidence 788888877665 38999987 3211 11 1233445
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH-HHHHH---
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML-RYCLE--- 301 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l-~~l~~--- 301 (317)
+.+++. ...++.+..+.+...+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.+ +++.+
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~--~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~t 211 (290)
T 2bbs_A 134 KACQLEEDISKFAEKDNIVLGEGG--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211 (290)
T ss_dssp HHTTCHHHHHTSTTGGGCBC------CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSE
T ss_pred HHhChHHHHHhccccccchhcCcc--CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCE
Confidence 555552 1122222322233333 6899999999999999999999999999999 9999999999864 33321
Q ss_pred --hcCCCcchhhcccCCC
Q 021147 302 --HADRNLSCKSCARNKV 317 (317)
Q Consensus 302 --~~~~~~~~~~~~~~~~ 317 (317)
...|++..+. .+|||
T Consensus 212 viivtHd~~~~~-~~d~i 228 (290)
T 2bbs_A 212 RILVTSKMEHLK-KADKI 228 (290)
T ss_dssp EEEECCCHHHHH-HSSEE
T ss_pred EEEEecCHHHHH-cCCEE
Confidence 1455555554 36653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=272.71 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=142.3
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..++++|+++.|++ .. |+.+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++..
T Consensus 268 ~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~---- 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQI---- 331 (538)
T ss_dssp EEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCC----
T ss_pred ceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCee----
Confidence 47999999999965 23 888999999999999999999999999999999999 999999976643
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
++|+||+... ....||.+|+.+....... .....+.++++
T Consensus 332 -------------------------------------i~~~~q~~~~-~~~~tv~~~l~~~~~~~~~--~~~~~~~~~l~ 371 (538)
T 3ozx_A 332 -------------------------------------LSYKPQRIFP-NYDGTVQQYLENASKDALS--TSSWFFEEVTK 371 (538)
T ss_dssp -------------------------------------EEEECSSCCC-CCSSBHHHHHHHHCSSTTC--TTSHHHHHTTT
T ss_pred -------------------------------------eEeechhccc-ccCCCHHHHHHHhhhhccc--hhHHHHHHHHH
Confidence 6666665432 2245888888764221111 11123456666
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.. +. +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 372 ~~~l~~--~~-~~~~--------~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi 440 (538)
T 3ozx_A 372 RLNLHR--LL-ESNV--------NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440 (538)
T ss_dssp TTTGGG--CT-TSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HcCCHH--Hh-cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 666532 22 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 441 ~vsHdl~~~~~~aDri 456 (538)
T 3ozx_A 441 IIDHDLSIHDYIADRI 456 (538)
T ss_dssp EECSCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHhCCEE
Confidence 578888888888885
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=269.30 Aligned_cols=178 Identities=17% Similarity=0.253 Sum_probs=141.1
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|+++.|++. . |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..
T Consensus 356 ~~l~~~~l~~~~~~~--~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~---~~-- 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF--K-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD---LT-- 418 (607)
T ss_dssp EEEEECCEEEECSSC--E-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC---CC--
T ss_pred eEEEEeceEEEecce--E-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe---eE--
Confidence 479999999999642 3 999999999999999999999999999999999999 999998741 11
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh-hccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL-KSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~a 228 (317)
+||+||++... ..+||.+++... .... ...+.+.+++
T Consensus 419 -------------------------------------i~~v~Q~~~~~-~~~tv~e~~~~~~~~~~----~~~~~~~~~l 456 (607)
T 3bk7_A 419 -------------------------------------VAYKPQYIKAE-YEGTVYELLSKIDSSKL----NSNFYKTELL 456 (607)
T ss_dssp -------------------------------------EEEECSSCCCC-CSSBHHHHHHHHHHHHH----HCHHHHHHTH
T ss_pred -------------------------------------EEEEecCccCC-CCCcHHHHHHhhhccCC----CHHHHHHHHH
Confidence 67777766432 345777776543 1100 1123466788
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 457 ~~~~l~~~~---~~~~--------~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 525 (607)
T 3bk7_A 457 KPLGIIDLY---DRNV--------EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525 (607)
T ss_dssp HHHTCTTTT---TSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHcCCchHh---cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 888874221 3334 7999999999999999999999999999999 9999999999999998642
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 526 i~vsHd~~~~~~~adrv 542 (607)
T 3bk7_A 526 LVVEHDVLMIDYVSDRL 542 (607)
T ss_dssp EEECSCHHHHHHHCSEE
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 568888888888875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=265.99 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=138.9
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
.+++++|+++.|++ .. |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..
T Consensus 286 ~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~---~~-- 348 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS--FR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD---LT-- 348 (538)
T ss_dssp EEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC---CC--
T ss_pred eEEEEeeEEEEECC--EE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC---ce--
Confidence 47999999999964 23 899999999999999999999999999999999999 999998741 11
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh-hccCCCChHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL-KSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~a 228 (317)
|||+||++... ..+||.+++... ..... ..+.+.+++
T Consensus 349 -------------------------------------i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~----~~~~~~~~l 386 (538)
T 1yqt_A 349 -------------------------------------VAYKPQYIKAD-YEGTVYELLSKIDASKLN----SNFYKTELL 386 (538)
T ss_dssp -------------------------------------EEEECSSCCCC-CSSBHHHHHHHHHHHHHT----CHHHHHHTT
T ss_pred -------------------------------------EEEEecCCcCC-CCCcHHHHHHhhhccCCC----HHHHHHHHH
Confidence 67777766432 345776666543 11000 123355666
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++... . ..++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 387 ~~~~l~~~--~-~~~~--------~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv 455 (538)
T 1yqt_A 387 KPLGIIDL--Y-DREV--------NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455 (538)
T ss_dssp TTTTCGGG--T-TSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHcCChhh--h-cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 66666321 1 3333 7999999999999999999999999999999 9999999999999998632
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 456 i~vsHd~~~~~~~~drv 472 (538)
T 1yqt_A 456 LVVEHDVLMIDYVSDRL 472 (538)
T ss_dssp EEECSCHHHHHHHCSEE
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 578888888888875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=264.24 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=140.5
Q ss_pred CCceEE--------EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEE
Q 021147 69 GSLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (317)
Q Consensus 69 ~~~I~~--------~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~ 140 (317)
..+|++ +||+++|++...+ |+++| +|++||++||+||||||||||+|+|+|+++ |++|++.
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~ 149 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNAFV-----LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDN 149 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTC
T ss_pred cceEEEecCCccccCCeEEEECCCCee-----eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCccc
Confidence 346888 8999999754333 99999 999999999999999999999999999999 8999841
Q ss_pred ECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc--hhhHHHHHHhhhccCCCCh
Q 021147 141 YNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF--VIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 141 i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~--~~tv~eni~~~~~~~~~~~ 218 (317)
.+-... . ..+.+.+..............+++++|....+.. ..|+.+|+.... ..
T Consensus 150 ~~~~~~-----~-------------~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~-- 206 (607)
T 3bk7_A 150 DSWDNV-----I-------------RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EV-- 206 (607)
T ss_dssp CCHHHH-----H-------------HHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CS--
T ss_pred cccchh-----h-------------heeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HH--
Confidence 000000 0 0011111111111111111236777776432221 127888886311 11
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
+++.++++.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+
T Consensus 207 ---~~~~~~L~~lgL~~~~---~~~~--------~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 207 ---GKFEEVVKELELENVL---DREL--------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ---SCHHHHHHHTTCTTGG---GSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCchh---CCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 2367889999984322 2333 7999999999999999999999999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+..++|||
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri 298 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVI 298 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEE
Confidence 98653 567777777777764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-30 Score=259.92 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=136.2
Q ss_pred eEE-EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE---------EE
Q 021147 72 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 141 (317)
Q Consensus 72 I~~-~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I---------~i 141 (317)
.++ +||+|+|++...+ |+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFV-----LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcccc-----ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 455 5999999754333 99999 999999999999999999999999999999 889984 12
Q ss_pred CcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccc--hhhHHHHHHhhhccCCCChH
Q 021147 142 NSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF--VIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 142 ~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~--~~tv~eni~~~~~~~~~~~~ 219 (317)
+|. +..............+++++|....++. ..++.+++.... .
T Consensus 90 ~g~---------------------------~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~---- 135 (538)
T 1yqt_A 90 RGN---------------------------ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---E---- 135 (538)
T ss_dssp TTS---------------------------THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---S----
T ss_pred CCc---------------------------cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---H----
Confidence 222 1111111111111236777776543221 126777775321 1
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRY 298 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~ 298 (317)
.+++.++++.+++.... ...+ .+||||||||++|||||+.+|+++||||||+ ||+.+...+.+.|++
T Consensus 136 -~~~~~~~l~~lgl~~~~---~~~~--------~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 136 -TGKLEEVVKALELENVL---EREI--------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp -SSCHHHHHHHTTCTTTT---TSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChhh---hCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 12367889999984322 3344 7999999999999999999999999999999 999999999999999
Q ss_pred HHHh------cCCCcchhhcccCCC
Q 021147 299 CLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 299 l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+. ..|++..+..++|||
T Consensus 204 l~~~g~tvi~vsHd~~~~~~~~dri 228 (538)
T 1yqt_A 204 LSEEGKSVLVVEHDLAVLDYLSDII 228 (538)
T ss_dssp HHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8653 567777777778874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-30 Score=272.98 Aligned_cols=229 Identities=13% Similarity=0.132 Sum_probs=143.3
Q ss_pred CCceEEEeEEEEcCCC-CccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~-~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
.++|+++||+|+|++. ..+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|++++. ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~i-----L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQ-----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCS-----EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CC
T ss_pred CceEEEEeeEEEeCCCCcee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cc
Confidence 3579999999999753 334 999999999999999999999999999999999999 99999999975 46
Q ss_pred eeeEecccC--CCCc--cccccee---e-ccCChHHHHH-----------HHHH-------hhhhccccc----cccccc
Q 021147 148 GTYFLQEYT--IPRG--VRHGELV---I-RRSDSSSLRN-----------RMRC-------KAHKIGCEP----SVIRKV 197 (317)
Q Consensus 148 ~~~~~Q~~~--l~~~--~~~~~~~---~-~~~~~~~~r~-----------~~~~-------~~~~ig~v~----Q~~~~~ 197 (317)
++|++|++. +... .+..++. . ...+...+.+ .+.. .....+++. +....+
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 899999642 1100 0000000 0 0000000000 0000 000001100 000000
Q ss_pred ----------------cchhhHHHHHHhhh--------------------ccCCCChHHHHHHHHHHHHcCCCcccCCCC
Q 021147 198 ----------------NFVIFVVDGLAVLK--------------------SMEGDSDVEKQYNQIVATTFNCPYLSFRDD 241 (317)
Q Consensus 198 ----------------~~~~tv~eni~~~~--------------------~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~ 241 (317)
...+|+.+|+.+.. ..........+++.++++.+++...... +
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~-~ 896 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVS-H 896 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHH-H
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhc-C
Confidence 01122223221100 0000011123557788888887421000 2
Q ss_pred CCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH---HhcCCCcchhhcccCCC
Q 021147 242 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL---EHADRNLSCKSCARNKV 317 (317)
Q Consensus 242 ~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~---~~~~~~~~~~~~~~~~~ 317 (317)
..+ .+||||||||++||||++.+|+++||||||+ ||+.+...+.+.|+++. -...|+...+..++|||
T Consensus 897 ~~~--------~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 897 SRI--------RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp SCG--------GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEE
T ss_pred CCc--------cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEE
Confidence 233 6999999999999999999999999999999 99999999999887752 13677788888788764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-29 Score=252.50 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=132.7
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCC-----CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~G-----e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++++++|++.... ++++||++.+| |++||+||||||||||+|+|+|+++ |++|+.. . ...
T Consensus 350 ~~~~~~y~~~~~~-----l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~~-~--~~~-- 414 (608)
T 3j16_B 350 ASRAFSYPSLKKT-----QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDI-P--KLN-- 414 (608)
T ss_dssp SSSCCEECCEEEE-----CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCCC-C--SCC--
T ss_pred cceeEEecCcccc-----cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcCc-c--CCc--
Confidence 6788888754434 89999999999 7899999999999999999999999 8888631 1 111
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
++|+||+.... ...|+.+++........ .......++++
T Consensus 415 -------------------------------------i~~~~q~~~~~-~~~tv~e~~~~~~~~~~---~~~~~~~~~l~ 453 (608)
T 3j16_B 415 -------------------------------------VSMKPQKIAPK-FPGTVRQLFFKKIRGQF---LNPQFQTDVVK 453 (608)
T ss_dssp -------------------------------------EEEECSSCCCC-CCSBHHHHHHHHCSSTT---TSHHHHHHTHH
T ss_pred -------------------------------------EEEeccccccc-CCccHHHHHHHHhhccc---ccHHHHHHHHH
Confidence 66666664322 23467776643211111 11234567788
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... . +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.++|+++.+.
T Consensus 454 ~l~l~~~--~-~~~~--------~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi 522 (608)
T 3j16_B 454 PLRIDDI--I-DQEV--------QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522 (608)
T ss_dssp HHTSTTT--S-SSBS--------SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HcCChhh--h-cCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 8887422 2 2333 7999999999999999999999999999999 9999999999999998642
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 523 ivtHdl~~~~~~aDrv 538 (608)
T 3j16_B 523 IVEHDFIMATYLADKV 538 (608)
T ss_dssp EECSCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHhCCEE
Confidence 678888888888875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-29 Score=252.15 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=127.4
Q ss_pred eEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEeccc
Q 021147 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 155 (317)
Q Consensus 76 nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~ 155 (317)
|++++|+..... |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|.........
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~------- 143 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEI------- 143 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHH-------
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhh-------
Confidence 568889765543 77777 699999999999999999999999999999 999987311110000
Q ss_pred CCCCcccccceeeccCChHHHHHHHHHhhhhccc--cccccccc-----cchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 156 TIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGC--EPSVIRKV-----NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~--v~Q~~~~~-----~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
...+.+.....+.... ..+.+.. .+|....+ ....++.+++.... ....+++.+++
T Consensus 144 ---------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~~~~~~~~l 206 (608)
T 3j16_B 144 ---------IKYFRGSELQNYFTKM--LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EKSPEDVKRYI 206 (608)
T ss_dssp ---------HHHTTTSTHHHHHHHH--HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CSCHHHHHHHH
T ss_pred ---------hheecChhhhhhhhHH--HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hhHHHHHHHHH
Confidence 0001111111111110 0111221 12211100 01123444433211 11234577889
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+.+++.... +..+ .+|||||+||++|||||+.+|+++||||||+ ||+.+...+.+.|+++.+.
T Consensus 207 ~~~gl~~~~---~~~~--------~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 207 KILQLENVL---KRDI--------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp HHHTCTGGG---GSCT--------TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred HHcCCcchh---CCCh--------HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 999985322 2333 7999999999999999999999999999999 9999999999999998643
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..++|||
T Consensus 276 ~vtHdl~~~~~~~drv 291 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFV 291 (608)
T ss_dssp EECSCHHHHHHHCSEE
T ss_pred EEeCCHHHHHHhCCEE
Confidence 567777777778874
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=244.04 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=101.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHH---------------------HHHhhcccCCCCCCcCc-------EEEECcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASERA-------QVTYNSS 144 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLl---------------------klL~Gl~~p~~~~p~~G-------~I~i~g~ 144 (317)
|+||||+|++||++||+||||||||||+ +++.|+.. |+.| .|.+++.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 9999999999999999999999999998 88888888 7744 4455543
Q ss_pred c------CceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccc-ccchhhHHHHHHhhhccC-CC
Q 021147 145 V------GDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK-VNFVIFVVDGLAVLKSME-GD 216 (317)
Q Consensus 145 ~------~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~-~~~~~tv~eni~~~~~~~-~~ 216 (317)
+ ..+++++|.+.++ ..++.++++++|.... ....+|+.+|+.+..... ..
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 166 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYL----------------------RLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE 166 (670)
T ss_dssp C-----CCBHHHHTTCC-----------------------------------------------CC--------------
T ss_pred hhhccchhceeeeechhhhH----------------------HHHHhhhcccccccccccccCCcHHHHHHHhhccccch
Confidence 2 1123333322111 0011124554443221 122468889987642111 00
Q ss_pred --ChH------HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc--eeeccCCCC-CC
Q 021147 217 --SDV------EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SD 285 (317)
Q Consensus 217 --~~~------~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD 285 (317)
... ...+...+++.+++.... . +..+ .+||||||||++|||||+.+|+ ++||||||+ ||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~-~~~~--------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD 236 (670)
T 3ux8_A 167 KEAQIARLILREIRDRLGFLQNVGLDYLT-L-SRSA--------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 236 (670)
T ss_dssp ------------CHHHHHHHHHTTCTTCC-T-TCBG--------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCchhh-h-cCCc--------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCC
Confidence 000 001123346677763211 1 2333 7999999999999999999988 999999999 99
Q ss_pred HHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 286 PENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 286 ~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+...+.+.|+++.+. ..|++..+. .+|||
T Consensus 237 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i 273 (670)
T 3ux8_A 237 QRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL 273 (670)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEE
Confidence 99999999999998643 456666544 36654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=246.30 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=132.5
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
..|...|++++|++. .+ |+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+
T Consensus 434 ~~L~~~~ls~~yg~~-~i-----L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~---- 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAK-IL-----LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFP---- 490 (986)
T ss_dssp CEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCC----
T ss_pred ceeEEeeEEEEECCE-Ee-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCc----
Confidence 357778999999754 34 999999999999999999999999999999995 111 2221
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
... . . +++|++|++..+...+|+.+|+.+ . ... . .+++.++++
T Consensus 491 ------------------~~~-~-----~-------~~~~v~q~~~~~~~~ltv~e~l~~-~-~~~-~---~~~v~~~L~ 533 (986)
T 2iw3_A 491 ------------------TQE-E-----C-------RTVYVEHDIDGTHSDTSVLDFVFE-S-GVG-T---KEAIKDKLI 533 (986)
T ss_dssp ------------------CTT-T-----S-------CEEETTCCCCCCCTTSBHHHHHHT-T-CSS-C---HHHHHHHHH
T ss_pred ------------------ccc-c-----e-------eEEEEcccccccccCCcHHHHHHH-h-hcC-H---HHHHHHHHH
Confidence 000 0 0 167788765334456789999975 1 111 1 456788899
Q ss_pred HcCCC-cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH----hc
Q 021147 230 TFNCP-YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE----HA 303 (317)
Q Consensus 230 ~~~l~-~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~----~~ 303 (317)
.++++ ... ..++ .+||||||||++||||++.+|+++||||||+ ||+.++..+.+.|++ .. ..
T Consensus 534 ~lgL~~~~~---~~~~--------~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIiv 601 (986)
T 2iw3_A 534 EFGFTDEMI---AMPI--------SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITI 601 (986)
T ss_dssp HTTCCHHHH---HSBG--------GGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEE
T ss_pred HcCCChhhh---cCCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEE
Confidence 99974 221 2333 7999999999999999999999999999999 999999999999987 21 15
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+..++|||
T Consensus 602 SHdl~~l~~~adri 615 (986)
T 2iw3_A 602 SHDSVFLDNVCEYI 615 (986)
T ss_dssp CSCHHHHHHHCSEE
T ss_pred ECCHHHHHHhCCEE
Confidence 67777777777764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=240.19 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=126.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEec-CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE-----------EEC
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 142 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~-~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I-----------~i~ 142 (317)
++++.+|+.+. ++-..|.+. +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35788997654 344555555 899999999999999999999999999 999987 233
Q ss_pred cccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH----hhhhccccccccccccchhhHHHHHHhhhccCCCCh
Q 021147 143 SSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC----KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 143 g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~ 218 (317)
|++ ...+...... ....+.++.+.+.++. .++.+++.... ..
T Consensus 71 g~~---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~l~~~~---~~-- 116 (538)
T 3ozx_A 71 GKE---------------------------IYNYFKELYSNELKIVHKIQYVEYASKFLK--GTVNEILTKID---ER-- 116 (538)
T ss_dssp TST---------------------------THHHHHHHHTTCCCEEEECSCTTGGGTTCC--SBHHHHHHHHC---CS--
T ss_pred Cee---------------------------HHHHHHHHhhcccchhhccchhhhhhhhcc--CcHHHHhhcch---hH--
Confidence 332 1111111000 0112344444333332 25666543211 11
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 219 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
+++.++++.+++.... ...+ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+
T Consensus 117 ---~~~~~~l~~l~l~~~~---~~~~--------~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~ 182 (538)
T 3ozx_A 117 ---GKKDEVKELLNMTNLW---NKDA--------NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182 (538)
T ss_dssp ---SCHHHHHHHTTCGGGT---TSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCchhh---cCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1266788888874322 3344 7999999999999999999999999999999 99999999999999
Q ss_pred HHHH-----hcCCCcchhhcccCCC
Q 021147 298 YCLE-----HADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~-----~~~~~~~~~~~~~~~~ 317 (317)
++.+ ...|++..+..++|+|
T Consensus 183 ~l~~g~tii~vsHdl~~~~~~~d~i 207 (538)
T 3ozx_A 183 ELLKNKYVIVVDHDLIVLDYLTDLI 207 (538)
T ss_dssp HHCTTSEEEEECSCHHHHHHHCSEE
T ss_pred HHhCCCEEEEEEeChHHHHhhCCEE
Confidence 9843 2567777777777764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=235.89 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=81.3
Q ss_pred ccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhccc
Q 021147 187 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLG 266 (317)
Q Consensus 187 ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ia 266 (317)
+++.+|....+ ..+|+.+|+.+... ....+++.+++..+++.... . +... .+||||||||++||
T Consensus 492 ~~~~~~~~~~~-~~ltv~e~l~~~~~-----~~~~~~~~~~l~~~~l~~~~-~-~~~~--------~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 492 VTYKGKNIAEV-LDMTVEDALDFFAS-----IPKIKRKLETLYDVGLGYMK-L-GQPA--------TTLSGGEAQRVKLA 555 (670)
T ss_dssp CCBTTBCHHHH-HTSBHHHHHHHTTT-----CHHHHHHHHHHHHTTCTTSB-T-TCCG--------GGCCHHHHHHHHHH
T ss_pred eeecCCCHHHH-hhCCHHHHHHHHHH-----hhhHHHHHHHHHHcCCchhh-c-cCCc--------hhCCHHHHHHHHHH
Confidence 45555544322 24689999987532 12334566777778863211 1 2333 79999999999999
Q ss_pred ceecccc---ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 267 ELLGIPP---AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 267 ral~~~p---~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|||+.+| +++||||||+ ||+.+...+.++|+++.+. ..|++..+. .+|||
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i 615 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYI 615 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEE
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEE
Confidence 9999876 5999999999 9999999999999998653 567777654 47764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=220.77 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccc---cceeeccCCCC-CCHHHHHHHHHHHH
Q 021147 222 QYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIP---PAKQIFDIPES-SDPENELIIVDMLR 297 (317)
Q Consensus 222 ~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~---p~ilIlDEPts-LD~~t~~~l~~~l~ 297 (317)
+++.++++.+++.... .+.+. .+|||||+||++|||+|+.+ |+++||||||+ ||+.+...+.+.|+
T Consensus 708 ~~~~~~L~~~gL~~~~--l~~~~--------~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~ 777 (842)
T 2vf7_A 708 FRALDTLREVGLGYLR--LGQPA--------TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLV 777 (842)
T ss_dssp HHHHHHHHHTTCTTSB--TTCCG--------GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccc--ccCCc--------ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 4567888888874211 13344 79999999999999999996 79999999999 99999999999999
Q ss_pred HHHHh------cCCCcchhhcccCCC
Q 021147 298 YCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 298 ~l~~~------~~~~~~~~~~~~~~~ 317 (317)
++.+. ..|++..+ ..+|||
T Consensus 778 ~L~~~G~tVIvisHdl~~i-~~aDri 802 (842)
T 2vf7_A 778 KLVDAGNTVIAVEHKMQVV-AASDWV 802 (842)
T ss_dssp HHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred HHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence 98653 56777777 567774
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-26 Score=215.65 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=131.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHccccccccC------CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEE
Q 021147 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106 (317)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~v 106 (317)
+.......|..+.++..+..|+.++++.+++.... ..++|+++||+|.|+ ..+ |+++||+|++|+++
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~~v-----L~~vsl~i~~Ge~v 129 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--INA-----LKLWLKGIPKKNCL 129 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--HHH-----HHHHHHTCTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--hhh-----hccceEEecCCCEE
Confidence 34566778888889999999999998765432211 113599999999996 334 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhh
Q 021147 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHK 186 (317)
Q Consensus 107 aIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (317)
+|+||||||||||+++|+|++ +|+|.
T Consensus 130 aIvGpsGsGKSTLl~lL~gl~--------~G~I~---------------------------------------------- 155 (305)
T 2v9p_A 130 AFIGPPNTGKSMLCNSLIHFL--------GGSVL---------------------------------------------- 155 (305)
T ss_dssp EEECSSSSSHHHHHHHHHHHH--------TCEEE----------------------------------------------
T ss_pred EEECCCCCcHHHHHHHHhhhc--------CceEE----------------------------------------------
Confidence 999999999999999999997 37664
Q ss_pred ccccccccccccchhhHHH-HHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcc
Q 021147 187 IGCEPSVIRKVNFVIFVVD-GLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL 265 (317)
Q Consensus 187 ig~v~Q~~~~~~~~~tv~e-ni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~i 265 (317)
++++|++.+|.. |+++ |+.++... . . .+.+.++.+ ++ +++. | ..||||||||
T Consensus 156 -~~v~q~~~lf~~--ti~~~ni~~~~~~-~--~----~~~~~i~~~-L~-----~gld------g--~~LSgGqkQR--- 208 (305)
T 2v9p_A 156 -SFANHKSHFWLA--SLADTRAALVDDA-T--H----ACWRYFDTY-LR-----NALD------G--YPVSIDRKHK--- 208 (305)
T ss_dssp -CGGGTTSGGGGG--GGTTCSCEEEEEE-C--H----HHHHHHHHT-TT-----GGGG------T--CCEECCCSSC---
T ss_pred -EEecCccccccc--cHHHHhhccCccc-c--H----HHHHHHHHH-hH-----ccCC------c--cCcCHHHHHH---
Confidence 344555555543 5665 66654211 1 1 233444442 22 2332 2 6899999999
Q ss_pred cceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHhcCCCcchhhcccCCC
Q 021147 266 GELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 317 (317)
Q Consensus 266 aral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 317 (317)
|||++++|+++| |+ ||+.++..+.. ..|++..+ ..+|||
T Consensus 209 ARAll~~p~iLl----Ts~LD~~~~~~i~~--------ltH~~~~~-~~aD~i 248 (305)
T 2v9p_A 209 AAVQIKAPPLLV----TSNIDVQAEDRYLY--------LHSRVQTF-RFEQPC 248 (305)
T ss_dssp CCCEECCCCEEE----EESSCSTTCGGGGG--------GTTTEEEE-ECCCCC
T ss_pred HHHHhCCCCEEE----ECCCCHHHHHHHHH--------HhCCHHHH-HhCCEE
Confidence 999999999999 99 99999988862 14555544 356664
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-27 Score=230.12 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=115.2
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-E-EEECcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~-I~i~g~~~ 146 (317)
.+|++++||+|.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |+++|..
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~~- 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLDP- 177 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECCT-
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCCc-
Confidence 46788888887773 4899999999999999999999999999999999 9999 9 9988732
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcccccccccccc--chhhHHHHHHhhhcc-CCCChHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN--FVIFVVDGLAVLKSM-EGDSDVEKQY 223 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~--~~~tv~eni~~~~~~-~~~~~~~~~~ 223 (317)
++ .++++||+..++. ..+|+.+|+ ++... ..... .++
T Consensus 178 ------------------------------~~-------~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~--~~~ 217 (460)
T 2npi_A 178 ------------------------------QQ-------PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL--LHN 217 (460)
T ss_dssp ------------------------------TS-------CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS--SCC
T ss_pred ------------------------------cC-------Ceeeeccchhhcccccccchhhhh-cccccccCcch--HHH
Confidence 11 2788888765433 235777777 54321 11000 011
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccce--eccccce----eeccC-CCC-CCHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGEL--LGIPPAK----QIFDI-PES-SDPENELIIVDM 295 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iara--l~~~p~i----lIlDE-Pts-LD~~t~~~l~~~ 295 (317)
+..+++.+++.... . . .+|||||+||+++||| |+.+|++ +|||| ||+ ||+. ...+.++
T Consensus 218 ~~~ll~~~gl~~~~---~--~--------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l 283 (460)
T 2npi_A 218 KQPMVKNFGLERIN---E--N--------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHI 283 (460)
T ss_dssp BCCEECCCCSSSGG---G--C--------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHH
T ss_pred HHHHHHHhCCCccc---c--h--------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHH
Confidence 22334444432111 1 2 6899999999999999 9999999 99999 999 9999 6666666
Q ss_pred HHH
Q 021147 296 LRY 298 (317)
Q Consensus 296 l~~ 298 (317)
+++
T Consensus 284 ~~~ 286 (460)
T 2npi_A 284 IEK 286 (460)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-24 Score=204.62 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=51.3
Q ss_pred CcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHH-----hcCCCcchhhcccCC
Q 021147 255 LTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLE-----HADRNLSCKSCARNK 316 (317)
Q Consensus 255 LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~-----~~~~~~~~~~~~~~~ 316 (317)
|||||+||++||++++.+| +++||||||+ ||+.+...+.+.|+++.+ ...|+...+ ..+||
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~ 364 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHH 364 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCe
Confidence 6999999999999999999 9999999999 999999999999999852 144555444 34565
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-23 Score=214.51 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=73.7
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---ceee
Q 021147 201 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQI 277 (317)
Q Consensus 201 ~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~ilI 277 (317)
+|+.+++.+... .. ...+..++++.+++.... .+.+. .+|||||+||++|||+|+.+| +++|
T Consensus 807 ltv~e~l~~~~~----~~-~~~~~~~~L~~~gL~~~~--l~~~~--------~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 807 MTVEDALDFFAS----IP-KIKRKLETLYDVGLGYMK--LGQPA--------TTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp SBHHHHHHHTCS----CH-HHHHHHHHHHHTTCSSSB--TTCCG--------GGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred cCHHHHHHHHhc----ch-hHHHHHHHHHHcCCCccc--ccCch--------hhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 456666654321 11 223456788888874211 13344 799999999999999999764 9999
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 278 FDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 278 lDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
|||||+ ||+.+...+.+.|+++.+. ..|++..+. .+|||
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrI 917 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYI 917 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEE
Confidence 999999 9999999999999998653 567777654 57764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=219.10 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=77.0
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc---cee
Q 021147 200 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP---AKQ 276 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p---~il 276 (317)
.+|+.+++.+... .....+..++++.+++.... .+.+. .+|||||+||++|||+|+++| +++
T Consensus 766 ~~tv~eal~f~~~-----~~~~~~~~~~L~~vGL~~~~--lgq~~--------~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 766 DMTVDEALEFFKN-----IPSIKRTLQVLHDVGLGYVK--LGQPA--------TTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp SSBHHHHHHHTTT-----CHHHHHHHHHHHHTTGGGSB--TTCCS--------TTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred hCCHHHHHHHHhc-----chhHHHHHHHHHHcCCchhh--ccCCc--------cCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 3577888776432 12334567788888873211 13444 799999999999999999765 799
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 277 IFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 277 IlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
||||||+ ||+.++..+.+.|+++.+. ..|++..+.. +|+|
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrI 877 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHI 877 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE
Confidence 9999999 9999999999999998653 5677777655 7764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-24 Score=202.31 Aligned_cols=165 Identities=10% Similarity=-0.063 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcccccccc-----CCCCceEEEeEEEEcCCCCccccccCceeeeeE-----------------------
Q 021147 48 RRRDAVFREVLQSYDQLRT-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYD----------------------- 99 (317)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~----------------------- 99 (317)
+.+|.++++.+..+..... .....|+++||++.|. +. ++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~---p~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYL---PL-----ARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhh---hH-----HHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 4666666665443322111 2345799999999994 22 5666654
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
+++|+++||+||||||||||+++|+|+++ |+.|. ..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-----~~~G~-------~~-------------------------------- 122 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-----RWDHH-------PR-------------------------------- 122 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-----TSTTC-------CC--------------------------------
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-----ccCCC-------Ce--------------------------------
Confidence 89999999999999999999999999999 76552 12
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
+++++|+..+++. |+.+|+.+...+........+.+.+.++.++.. .. .... ..||+||
T Consensus 123 -------v~~v~qd~~~~~~--t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~---~~-~~~~--------~~lS~G~ 181 (312)
T 3aez_A 123 -------VDLVTTDGFLYPN--AELQRRNLMHRKGFPESYNRRALMRFVTSVKSG---SD-YACA--------PVYSHLH 181 (312)
T ss_dssp -------EEEEEGGGGBCCH--HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTT---CS-CEEE--------EEEETTT
T ss_pred -------EEEEecCccCCcc--cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCC---cc-cCCc--------ccCChhh
Confidence 5666666544432 666766543211111112234456666665521 11 1223 5899999
Q ss_pred HHhhcccceeccccceeeccCCCC-CC
Q 021147 260 RIRTYLGELLGIPPAKQIFDIPES-SD 285 (317)
Q Consensus 260 ~qRl~iaral~~~p~ilIlDEPts-LD 285 (317)
+||+++|++++.+|+++|+|||+. +|
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCC
Confidence 999999999999999999999999 86
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-24 Score=192.01 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=94.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ +....
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~----------------------~~~~~ 61 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVS----------------------CTTRK 61 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCC----------------------EECSC
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eec----------------------ccCCC
Confidence 99999999999999999999999999999999986 4 88888 654 11111
Q ss_pred h-HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 S-SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~-~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. ...+ ..++|++|++.+|.......+++..+.............+.++++... .+ +..
T Consensus 62 ~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~----------~~-il~--- 120 (218)
T 1z6g_A 62 KREKEK-------EGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNK----------IC-LFE--- 120 (218)
T ss_dssp CCSSCC-------BTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTC----------EE-EEE---
T ss_pred CCcccc-------cCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCC----------cE-EEE---
Confidence 0 0011 127888887765432110111221110000000001123444444321 11 111
Q ss_pred hhcCcHHHHHhhcc-----cceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYL-----GELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 252 ~~~LSgG~~qRl~i-----aral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..|||||+||+++ +|+++..|++++||||++ +|..++..+.+.+.++.+
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4799999999999 899999999999999999 999999999988877643
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-22 Score=173.03 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=42.6
Q ss_pred cCcHHHHHhhcccceeccccceeeccCCCC-CCHHH----------------HHHHHHHHHHHHHh
Q 021147 254 SLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPEN----------------ELIIVDMLRYCLEH 302 (317)
Q Consensus 254 ~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t----------------~~~l~~~l~~l~~~ 302 (317)
..|+|++||+++|||+..+|++++|||||+ ||+.+ ...+.+.++++.+.
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~ 148 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE 148 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence 569999999999999999999999999999 99994 47777777766543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-23 Score=185.99 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=83.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|++| ++|++++|+||||||||||+|+|+|+ + |++|+|.. .+ +.. +
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~~--~~----------------------~~~-~ 60 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVSR--II----------------------LTR-P 60 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCSE--EE----------------------EEE-C
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeeee--EE----------------------ecC-C
Confidence 8885 89999999999999999999999999 9 99999842 11 110 1
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHH-Hhhh----ccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL-AVLK----SMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 247 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni-~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~ 247 (317)
...+++ .+||+||++ .+|+ .+.. ....... .+++.++++. +
T Consensus 61 ~~~~~~-------~ig~v~q~~---------~enl~~~~~~~~~~~~~~~~--~~~~~~~l~~-g--------------- 106 (208)
T 3b85_A 61 AVEAGE-------KLGFLPGTL---------NEKIDPYLRPLHDALRDMVE--PEVIPKLMEA-G--------------- 106 (208)
T ss_dssp SCCTTC-------CCCSSCC---------------CTTTHHHHHHHTTTSC--TTHHHHHHHT-T---------------
T ss_pred chhhhc-------ceEEecCCH---------HHHHHHHHHHHHHHHHHhcc--HHHHHHHHHh-C---------------
Confidence 111122 399999975 3343 2210 0000000 0112222221 1
Q ss_pred eccchhcCcHHHHHhhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 248 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 248 ~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
| ||+||+++||||+.+|+++||||||+ . ++..+.+.|+++
T Consensus 107 -------l--Gq~qrv~lAraL~~~p~lllLDEPts--~-~~~~l~~~l~~l 146 (208)
T 3b85_A 107 -------I--VEVAPLAYMRGRTLNDAFVILDEAQN--T-TPAQMKMFLTRL 146 (208)
T ss_dssp -------S--EEEEEGGGGTTCCBCSEEEEECSGGG--C-CHHHHHHHHTTB
T ss_pred -------C--chHHHHHHHHHHhcCCCEEEEeCCcc--c-cHHHHHHHHHHh
Confidence 1 89999999999999999999999999 4 788888887775
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-23 Score=200.73 Aligned_cols=142 Identities=10% Similarity=0.057 Sum_probs=109.0
Q ss_pred ceeeeeEecCCC--------------------EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEe
Q 021147 93 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (317)
Q Consensus 93 L~~isl~I~~Ge--------------------~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~ 152 (317)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~------ 107 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEV------ 107 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC---------
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeec------
Confidence 999999999999 999999999999999999999999 9999999887641
Q ss_pred cccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcC
Q 021147 153 QEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 232 (317)
Q Consensus 153 Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~ 232 (317)
. + .++++|++. ...+|++||+.++.. .. ++.++++.++
T Consensus 108 ----------------t---------~-------~~~v~q~~~--~~~ltv~D~~g~~~~---~~-----~~~~~L~~~~ 145 (413)
T 1tq4_A 108 ----------------T---------M-------ERHPYKHPN--IPNVVFWDLPGIGST---NF-----PPDTYLEKMK 145 (413)
T ss_dssp --------------------------C-------CCEEEECSS--CTTEEEEECCCGGGS---SC-----CHHHHHHHTT
T ss_pred ----------------c---------e-------eEEeccccc--cCCeeehHhhcccch---HH-----HHHHHHHHcC
Confidence 0 0 245555531 223466666554321 11 2567777777
Q ss_pred CCcccCCCCCCEEEEeccchhcCcHH--HHHhhcccceecc----------ccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 233 CPYLSFRDDKPVVVVTHGDLLSLTDR--ARIRTYLGELLGI----------PPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 233 l~~~~l~~~~~~~i~~hg~~~~LSgG--~~qRl~iaral~~----------~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+... .... .||+| |+||+++|+++.. +|++++|||||+ ||+.++..+.+.++++
T Consensus 146 L~~~----~~~~---------~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 146 FYEY----DFFI---------IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp GGGC----SEEE---------EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred CCcc----CCeE---------EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 5211 1111 27888 9999999999999 999999999999 9999999999999988
Q ss_pred H
Q 021147 300 L 300 (317)
Q Consensus 300 ~ 300 (317)
.
T Consensus 213 ~ 213 (413)
T 1tq4_A 213 C 213 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=171.01 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=45.5
Q ss_pred hhcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+..||+||+||++||++++ .+|+++||||||+ ||+.+...+.+.++++.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 270 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS 270 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999997 6889999999999 99999999999999873
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-20 Score=164.11 Aligned_cols=64 Identities=6% Similarity=-0.152 Sum_probs=52.5
Q ss_pred hcCcHHHHHhhcccce-----eccccceeeccC--CCC-CCHHHHHHHHHHHHHHHH------hcCCCcchhhcccCC
Q 021147 253 LSLTDRARIRTYLGEL-----LGIPPAKQIFDI--PES-SDPENELIIVDMLRYCLE------HADRNLSCKSCARNK 316 (317)
Q Consensus 253 ~~LSgG~~qRl~iara-----l~~~p~ilIlDE--Pts-LD~~t~~~l~~~l~~l~~------~~~~~~~~~~~~~~~ 316 (317)
..|||||+||+++||| ++.+|+++|||| |++ +|+.....+.+.+++... |..|+..++..+++|
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 6899999999999996 999999999999 999 999999999888876311 114566677666665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=175.68 Aligned_cols=145 Identities=13% Similarity=0.122 Sum_probs=99.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++||++++|++++|+||||||||||++.|+|++. |++|+|.++|.+ .....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d----------------------~~r~~ 142 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGD----------------------TFRAA 142 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCC----------------------CSCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeec----------------------ccchh
Confidence 457899999999999999999999999999999999 999999999876 21110
Q ss_pred -hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 -SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 -~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
.++++... ....|+|++|++..+.+..++++|+.++...... ..++..+++.. .. .. .
T Consensus 143 a~~ql~~~~--~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d--------~~lldt~gl~~--~~-~~--------~ 201 (302)
T 3b9q_A 143 ASDQLEIWA--ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYD--------VVLCDTSGRLH--TN-YS--------L 201 (302)
T ss_dssp HHHHHHHHH--HHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCS--------EEEECCCCCSS--CC-HH--------H
T ss_pred HHHHHHHHH--HhcCceEEEecCCccCHHHHHHHHHHHHHHcCCc--------chHHhcCCCCc--ch-hH--------H
Confidence 01111100 0124999999875133467899999765321110 01122233210 00 11 1
Q ss_pred hhcCcHHHHHhhcccceeccccc--eeeccCCCC-CCHHHH
Q 021147 252 LLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SDPENE 289 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD~~t~ 289 (317)
..+|| +||+++|||+..+|+ +++|| ||+ +|+.++
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH
Confidence 25788 889999999999999 99999 999 999865
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-21 Score=177.77 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=74.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKA 184 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (317)
.++|+||||||||||+|+|+|+.. |++|+|.++|++ +.... .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~----------------------i~~~~---~~------- 46 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEK----------------------IPKTV---EI------- 46 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------------------------------CCCCC---SC-------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcc----------------------cCcce---ee-------
Confidence 489999999999999999999999 999999999975 11100 11
Q ss_pred hhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhc
Q 021147 185 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTY 264 (317)
Q Consensus 185 ~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~ 264 (317)
+.+++++|+..++ ..+||.||+.++........ .+.+...+.. ... .+.. .+||+||+||++
T Consensus 47 ~~i~~v~q~~~~~-~~ltv~d~~~~g~~~~~~~~--~~~i~~~~~~----~~~---~~~~--------~~LS~G~~qrv~ 108 (270)
T 3sop_A 47 KAIGHVIEEGGVK-MKLTVIDTPGFGDQINNENC--WEPIEKYINE----QYE---KFLK--------EEVNIARKKRIP 108 (270)
T ss_dssp CEEEESCC----C-CEEEEECCCC--CCSBCTTC--SHHHHHHHHH----HHH---HHHH--------HHSCTTCCSSCC
T ss_pred eeeEEEeecCCCc-CCceEEechhhhhhcccHHH--HHHHHHHHHH----HHH---hhhH--------HhcCcccchhhh
Confidence 2389999987543 35789999887653222111 1122222221 000 1112 689999999999
Q ss_pred ccceeccccceeeccCCCC-CCHHHH
Q 021147 265 LGELLGIPPAKQIFDIPES-SDPENE 289 (317)
Q Consensus 265 iaral~~~p~ilIlDEPts-LD~~t~ 289 (317)
+|||++. ++++|||++ ||+...
T Consensus 109 iaRal~~---lllldep~~gL~~lD~ 131 (270)
T 3sop_A 109 DTRVHCC---LYFISPTGHSLRPLDL 131 (270)
T ss_dssp CCSCCEE---EEEECCCSSSCCHHHH
T ss_pred hheeeee---eEEEecCCCcCCHHHH
Confidence 9999875 999999999 999873
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=166.85 Aligned_cols=66 Identities=17% Similarity=0.022 Sum_probs=54.0
Q ss_pred chhcCcHHHHHhhcccceec------cccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 251 DLLSLTDRARIRTYLGELLG------IPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+.+|||||+||++||||++ .+|+++||||||+ ||+.+...+.+.|+++.+. ..|++.. ...+|||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~ 354 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRK 354 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEE
Confidence 34689999999999999999 7999999999999 9999999999999987532 4455554 3345653
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-20 Score=179.49 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=115.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCcee
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~ 149 (317)
++++++|+++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+++ |+.|.|.++|++..
T Consensus 130 ~~l~~~~v~~~~~tg~~v-----ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~-- 196 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRA-----INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGR-- 196 (438)
T ss_dssp CTTTSCCCCSBCCCSCHH-----HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH--
T ss_pred CceEEeccceecCCCceE-----Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecH--
Confidence 579999999999744444 9999 9999999999999999999999999999999 99999999987300
Q ss_pred eEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 021147 150 YFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 150 ~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~ 229 (317)
.+..+..... ....+.+.++|++|+.......+++.+|+.+...+. +
T Consensus 197 -----------------ev~~~~~~~~--~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~--------------~ 243 (438)
T 2dpy_A 197 -----------------EVKDFIENIL--GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF--------------R 243 (438)
T ss_dssp -----------------HHHHHHHTTT--HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH--------------H
T ss_pred -----------------HHHHHHHhhc--cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH--------------H
Confidence 0111000000 001122349999995433445678888887532110 0
Q ss_pred HcCCCcccCCCCCCEE-EEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 230 TFNCPYLSFRDDKPVV-VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~-i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.- +..+. +.+. ..+||+|| ||+++| +.+|++ |+ ||+.+...+.++++++.+
T Consensus 244 ~~---------~~~v~~~ld~--l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 244 DR---------GQHVLLIMDS--LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp TT---------TCEEEEEEEC--HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred hC---------CCCHHHHHHh--HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence 00 11111 1122 37899999 889999 777877 88 999999999999988644
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-19 Score=173.65 Aligned_cols=145 Identities=13% Similarity=0.123 Sum_probs=100.2
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC-
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD- 172 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~- 172 (317)
..+||++++|++++|+||||||||||++.|+|++. |++|+|.++|.+ .....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D----------------------~~r~~a 200 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGD----------------------TFRAAA 200 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCC----------------------CSCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEeccc----------------------ccccch
Confidence 46899999999999999999999999999999999 999999999876 21110
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
.++++... ....|+|++|++..+.+..++++|+.++.....+ ..++..+++.. .. .. ..
T Consensus 201 ~eql~~~~--~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d--------~~lldt~Gl~~--~~-~~--------~~ 259 (359)
T 2og2_A 201 SDQLEIWA--ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYD--------VVLCDTSGRLH--TN-YS--------LM 259 (359)
T ss_dssp HHHHHHHH--HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCS--------EEEEECCCCSS--CC-HH--------HH
T ss_pred hHHHHHHH--HhcCeEEEEecccccChhhhHHHHHHHHHhCCCH--------HHHHHhcCCCh--hh-hh--------HH
Confidence 01111100 0124999999875134467899998765321110 01122233210 00 01 12
Q ss_pred hcCcHHHHHhhcccceeccccc--eeeccCCCC-CCHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SDPENEL 290 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD~~t~~ 290 (317)
.+|| +||+++||++..+|+ +++|| ||+ +|+.++.
T Consensus 260 ~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 260 EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 5788 889999999999999 99999 999 9998653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-20 Score=174.70 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=45.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCee
Confidence 889999999999999999999999999999999999 999999988753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-20 Score=163.33 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=92.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++| .+|++|++++|+||||||||||+|+|+|+++ . |.+++. +...+
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-----~----i~~~~~-----------------------~~~~~ 57 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-----N----LHFSVS-----------------------ATTRA 57 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST-----T----CEECCC-----------------------EESSC
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-----c----eEEccc-----------------------ccccC
Confidence 788 7999999999999999999999999999985 3 223221 10000
Q ss_pred h-HHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh------ccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEE
Q 021147 173 S-SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK------SMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVV 245 (317)
Q Consensus 173 ~-~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~ 245 (317)
. ... .+.++|++|++..|. .+++.+|+.... ..... + .+.+.+.++... ..+
T Consensus 58 ~~~~~-------~~~i~~~~q~~~~~~-~~~~~~~l~~~~~~~~n~~~~g~-~--~~~~~~~~~~~~----------~~~ 116 (207)
T 1znw_A 58 PRPGE-------VDGVDYHFIDPTRFQ-QLIDQGELLEWAEIHGGLHRSGT-L--AQPVRAAAATGV----------PVL 116 (207)
T ss_dssp CCTTC-------CBTTTBEECCHHHHH-HHHHTTCEEEEEEEGGGTEEEEE-E--HHHHHHHHHHTC----------CEE
T ss_pred Ccccc-------cCCCeeEecCHHHHH-HHHhcCCceeehhhcCchhhcCC-c--HHHHHHHHHcCC----------eEE
Confidence 0 000 123889998876553 566666653211 00000 1 111222222210 000
Q ss_pred EEeccchhcCcHHHHHhhcccc---eeccccceeeccCCCC-C----CHHHHHHHHHHHHHHHHh-------cCCCcchh
Q 021147 246 VVTHGDLLSLTDRARIRTYLGE---LLGIPPAKQIFDIPES-S----DPENELIIVDMLRYCLEH-------ADRNLSCK 310 (317)
Q Consensus 246 i~~hg~~~~LSgG~~qRl~iar---al~~~p~ilIlDEPts-L----D~~t~~~l~~~l~~l~~~-------~~~~~~~~ 310 (317)
+. .++.|.+.++-...+ +++.+|++++||||++ + |+..+..+.+.++++.+. ..|++..+
T Consensus 117 ~~-----l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~ 191 (207)
T 1znw_A 117 IE-----VDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESA 191 (207)
T ss_dssp EE-----CCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHH
T ss_pred EE-----eCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHH
Confidence 00 123333333333333 8999999999999998 8 788999999999888642 45566666
Q ss_pred hcccCCC
Q 021147 311 SCARNKV 317 (317)
Q Consensus 311 ~~~~~~~ 317 (317)
...+|||
T Consensus 192 ~~~~d~i 198 (207)
T 1znw_A 192 CAELVSL 198 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.8e-19 Score=152.52 Aligned_cols=188 Identities=10% Similarity=-0.027 Sum_probs=96.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+|.|+. .+ +++ |.+++|..++|+|+||||||||++.|+|........|+.|.+.+.+.-
T Consensus 3 ~l~~~~~~~~~~~--~~-----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~----- 68 (210)
T 1pui_A 3 NLNYQQTHFVMSA--PD-----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF----- 68 (210)
T ss_dssp --------CEEEE--SS-----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-----
T ss_pred chhhhhhhheeec--CC-----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-----
Confidence 6899999999962 23 777 999999999999999999999999999998100001777876542210
Q ss_pred Eecc-cCCCCccccccee---eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 151 FLQE-YTIPRGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~-~~l~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
...+ ..+. ...+.. ........+++. +++.+|....... ..+..++. ...+....++..
T Consensus 69 ~~~~~~~l~---Dt~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~v~d~~------~~~~~~~~~~~~ 131 (210)
T 1pui_A 69 EVADGKRLV---DLPGYGYAEVPEEMKRKWQRA-------LGEYLEKRQSLQG-LVVLMDIR------HPLKDLDQQMIE 131 (210)
T ss_dssp EEETTEEEE---ECCCCC------CCHHHHHHH-------HHHHHHHCTTEEE-EEEEEETT------SCCCHHHHHHHH
T ss_pred EecCCEEEE---ECcCCcccccCHHHHHHHHHH-------HHHHHHhhhcccE-EEEEEECC------CCCchhHHHHHH
Confidence 0000 0000 000000 000111223333 3333322111110 00001110 011122223444
Q ss_pred HHHHcCCCcccCCCCCCEE-EEeccchhcCcHHHHHh-hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 227 VATTFNCPYLSFRDDKPVV-VVTHGDLLSLTDRARIR-TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~-i~~hg~~~~LSgG~~qR-l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
.+...+ .+.+ +.+.- ..+|+|++|| +..+++++.+|..+++|||+| +|+.+...+.+.|.++.
T Consensus 132 ~~~~~~---------~~~~~v~nK~--D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 132 WAVDSN---------IAVLVLLTKA--DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHTT---------CCEEEEEECG--GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHcC---------CCeEEEEecc--cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 444433 3333 34443 4789999998 789999999999999999999 99999999999988865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-17 Score=141.94 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=86.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCc---CcEEEECcccCceeeEecccCCCCcccccceeeccCC---hHHHH
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD---SSSLR 177 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~---~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~---~~~~r 177 (317)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.+ +..++ .+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~----------------------i~~~~~~~~d~~r 55 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHG----------------------DFEIDKEGKDSWK 55 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC----------------------------------CHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcc----------------------cccCCccchhHHH
Confidence 5899999999999999999999999 87 8999999976 33333 44555
Q ss_pred -HHHHHhhhhcc----ccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 178 -NRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 178 -~~~~~~~~~ig----~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
++ +| +++|++.+|.. + . .......+.+.++. .++ ++++++++.
T Consensus 56 ~~~-------ig~~~~~~~~~~~~~i~-----~---------~-~~~~~a~l~~~i~~------~l~-g~dt~i~Eg--- 103 (171)
T 2f1r_A 56 IYN-------SGADVVIASPVKLAFIR-----R---------V-SEEEGNDLDWIYER------YLS-DYDLVITEG--- 103 (171)
T ss_dssp HHH-------HTCEEEEECSSEEEEEE-----E---------C-CHHHHTCHHHHHHH------HTT-TCSEEEEES---
T ss_pred HHh-------cCCceEEECCCcEEEEe-----c---------C-ChhhhhCHHHHHHh------hCC-CCCEEEECC---
Confidence 24 77 78887754411 0 0 01000012222221 045 799999983
Q ss_pred hcCcHHHHHhhcccceeccccceee-------ccCCC---C-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQI-------FDIPE---S-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilI-------lDEPt---s-LD~~t~~~l~~~l~~l~ 300 (317)
|||||+||+++|||++.+|++.- -|.|. - +|......+.+.+.+..
T Consensus 104 --lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~ 160 (171)
T 2f1r_A 104 --FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLL 160 (171)
T ss_dssp --CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHH
T ss_pred --cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHH
Confidence 99999999999999999998742 23331 2 44455566777765543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-17 Score=148.07 Aligned_cols=131 Identities=12% Similarity=0.025 Sum_probs=78.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+|+||++++|+++||+||||||||||+++|+|++. . +.++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-----~----~~~~~----------------------------- 56 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-----Q----NEVEQ----------------------------- 56 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT-----G----GGSCG-----------------------------
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----h----hcccc-----------------------------
Confidence 999999999999999999999999999999999864 1 11110
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCCh--HHHHHHHHHHHHcCCCcccCCCCCCEEEEec
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSD--VEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 249 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~--~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~h 249 (317)
. .+.+++++|+. +...+|+.+++.+... +....+ ...+++.+.++.+.- +.....
T Consensus 57 ---~-------~~~i~~v~~d~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-----~~~~~~----- 114 (245)
T 2jeo_A 57 ---R-------QRKVVILSQDR--FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVE-----GKTVEV----- 114 (245)
T ss_dssp ---G-------GCSEEEEEGGG--GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHT-----TCCEEE-----
T ss_pred ---c-------CCceEEEeCCc--CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHC-----CCCeec-----
Confidence 0 11266777664 3334566666654321 111111 112233444443210 112223
Q ss_pred cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHH
Q 021147 250 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPE 287 (317)
Q Consensus 250 g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~ 287 (317)
..||+|++||+++ ++++.+|+++|+|+|.. .+..
T Consensus 115 ---~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 115 ---PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp ---CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred ---ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 5899999999988 68889999999999998 6654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-18 Score=159.15 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=53.1
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEECcccCcee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGT 149 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~g~~~~~~ 149 (317)
.+++++|++. .+ |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+ +.
T Consensus 5 ~~~l~~l~~~-----~v-----l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~--i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP-----DK-----VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDP--IE 65 (261)
T ss_dssp -CCGGGSSCC-----TH-----HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESS--CC
T ss_pred CCChHHCCCH-----HH-----HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCc--ce
Confidence 4566677642 23 99999 99999999999999999999999999999 88 9999999976 34
Q ss_pred eEecc
Q 021147 150 YFLQE 154 (317)
Q Consensus 150 ~~~Q~ 154 (317)
|++|.
T Consensus 66 ~~~~~ 70 (261)
T 2eyu_A 66 YVFKH 70 (261)
T ss_dssp SCCCC
T ss_pred eecCC
Confidence 55543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=168.77 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=101.8
Q ss_pred CCceEEEe-----EEEEcCCCCccccccCceeeeeEecC-------CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC
Q 021147 69 GSLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (317)
Q Consensus 69 ~~~I~~~n-----ls~~y~~~~~~~~~~~L~~isl~I~~-------Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~ 136 (317)
.++|+++| |++.|.+...+ ++|+||++++ |++++|+||||||||||+|+| |++. +.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~- 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM- 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH-
T ss_pred CceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH-
Confidence 45799999 99999544444 9999999987 999999999999999999999 9987 21
Q ss_pred cEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhcc-ccccccccccchhhHHHHHHhhhccCC
Q 021147 137 AQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVDGLAVLKSMEG 215 (317)
Q Consensus 137 G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig-~v~Q~~~~~~~~~tv~eni~~~~~~~~ 215 (317)
. ++| ||||+.. .+++.+++.. .
T Consensus 816 -----------------------------------------a-------qiG~~Vpq~~~----~l~v~d~I~~--r--- 838 (1022)
T 2o8b_B 816 -----------------------------------------A-------QMGCYVPAEVC----RLTPIDRVFT--R--- 838 (1022)
T ss_dssp -----------------------------------------H-------TTTCCEESSEE----EECCCSBEEE--E---
T ss_pred -----------------------------------------h-------heeEEeccCcC----CCCHHHHHHH--H---
Confidence 1 166 7787652 2344444421 0
Q ss_pred CChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHH-HHHH
Q 021147 216 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENE-LIIV 293 (317)
Q Consensus 216 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~-~~l~ 293 (317)
+++... +..+. ..+|+++++ +++|++++.+|+++|||||++ +|+... ..+.
T Consensus 839 ---------------ig~~d~-~~~~~----------stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~ 891 (1022)
T 2o8b_B 839 ---------------LGASDR-IMSGE----------STFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIAN 891 (1022)
T ss_dssp ---------------CC--------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHH
T ss_pred ---------------cCCHHH-Hhhch----------hhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHH
Confidence 111000 00011 467888876 999999999999999999999 999874 5567
Q ss_pred HHHHHHHHh-------cCCCcchhhcccCC
Q 021147 294 DMLRYCLEH-------ADRNLSCKSCARNK 316 (317)
Q Consensus 294 ~~l~~l~~~-------~~~~~~~~~~~~~~ 316 (317)
+.++.+.+. +.|.+..+..++|+
T Consensus 892 ~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 892 AVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 788777543 34555555555554
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=158.52 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=64.4
Q ss_pred HHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 224 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 224 ~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
+.+.+..+++.... .+..+ .+|||||+|||+||++|..+| .++||||||+ ||+...+.+.+.++++.
T Consensus 359 rl~~L~~vGL~~l~--l~r~~--------~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 359 RLDVLLHLGLGYLG--LDRST--------PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHHTTCTTSB--TTCBG--------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCC--ccCCc--------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 34456677764221 14444 799999999999999999999 5999999999 99999999999999986
Q ss_pred Hh------cCCCcchhhcccCCC
Q 021147 301 EH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 301 ~~------~~~~~~~~~~~~~~~ 317 (317)
.. .+|++..+. .+|+|
T Consensus 429 ~~G~TVIvVeHdl~~l~-~aD~i 450 (842)
T 2vf7_A 429 RGGNSLFVVEHDLDVIR-RADWL 450 (842)
T ss_dssp TTTCEEEEECCCHHHHT-TCSEE
T ss_pred HcCCEEEEEcCCHHHHH-hCCEE
Confidence 43 566666553 46664
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-17 Score=141.80 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=83.8
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
+.++|+++||+||||||||||+++|+|++. | .++|++|+..+++.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~------------~i~~v~~d~~~~~~------------------ 46 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG-----E------------RVALLPMDHYYKDL------------------ 46 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG-----G------------GEEEEEGGGCBCCC------------------
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC-----C------------CeEEEecCccccCc------------------
Confidence 357899999999999999999999999998 5 24556665433210
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHH
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDR 258 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG 258 (317)
..+++.++..+.. ........+++.++++.+++.... ..+. ..+|+|
T Consensus 47 --------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~--------~~~s~g 93 (211)
T 3asz_A 47 --------------------GHLPLEERLRVNY--DHPDAFDLALYLEHAQALLRGLPV---EMPV--------YDFRAY 93 (211)
T ss_dssp --------------------TTSCHHHHHHSCT--TSGGGBCHHHHHHHHHHHHTTCCE---EECC--------EETTTT
T ss_pred --------------------ccccHHHhcCCCC--CChhhhhHHHHHHHHHHHHcCCCc---CCCc--------ccCccc
Confidence 0112333322110 000011123455566665542111 0112 567877
Q ss_pred H----HHhhcccceeccccceeeccCCCC--------CCHHHHHHHHHHHHHH
Q 021147 259 A----RIRTYLGELLGIPPAKQIFDIPES--------SDPENELIIVDMLRYC 299 (317)
Q Consensus 259 ~----~qRl~iaral~~~p~ilIlDEPts--------LD~~t~~~l~~~l~~l 299 (317)
+ +||++++++++.+|+++++|||++ ||+..+..+...+.+.
T Consensus 94 ~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 94 TRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp EECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 5 478999999999999999999976 5888888888877765
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-16 Score=160.31 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=52.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeee-EecCCCEEEEEcCCCChHHHHHHH--HhhcccCCCCCCcCcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl-~I~~Ge~vaIvG~SGsGKSTLlkl--L~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++.+++.+.+ .+..+ |++||| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+
T Consensus 12 ~~~~~~~~~~~-~g~~~-----Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~ 78 (525)
T 1tf7_A 12 NSEHQAIAKMR-TMIEG-----FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEE 78 (525)
T ss_dssp --CCSSCCEEC-CCCTT-----HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred Ccccccccccc-CCchh-----HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 45555665433 33333 999999 999999999999999999999999 789999 899999998864
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-16 Score=149.47 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=58.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++++++++++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+.. |+.|.|.+.|++
T Consensus 43 ~~~i~~~~l~~~~~tg~~a-----ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~ 108 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRA-----IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGER 108 (347)
T ss_dssp SCSTTCCCCCSEECCSCHH-----HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCC
T ss_pred CCCeeecccceecCCCCEE-----EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEeccc
Confidence 3578999999999744444 9999 9999999999999999999999999999999 999999988763
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-16 Score=148.57 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=64.7
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc-ccCCCCCCcCcEEEECcccCceeeEec
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 153 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl-~~p~~~~p~~G~I~i~g~~~~~~~~~Q 153 (317)
+||++.|++.. + +++++|+| +|+|+||||||||+++|.|. .. |++| |.++|.+
T Consensus 2 ~~l~~~~~~~~-~-----l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~-------- 55 (301)
T 2qnr_A 2 SNLPNQVHRKS-V-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEK-------- 55 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEE-E-----EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcc--------
Confidence 47899997553 3 99999998 99999999999999999998 77 8888 8877754
Q ss_pred ccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCC
Q 021147 154 EYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 233 (317)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l 233 (317)
+.. . .. .. .+++++|.... ...++++|++.++........ -......+...+.
T Consensus 56 --------------~~~-t-~~-~~-------~~~~~~q~~~~-~~~ltv~Dt~g~~~~~~~~e~-~~~l~~~l~~~~~- 108 (301)
T 2qnr_A 56 --------------IER-T-VQ-IE-------ASTVEIEERGV-KLRLTVVDTPGYGDAINCRDC-FKTIISYIDEQFE- 108 (301)
T ss_dssp ---------------------------------CEEEEC---C-CEEEEEEEEC------------CTTHHHHHHHHHH-
T ss_pred --------------cCC-c-ce-Ee-------eEEEEecCCCc-ccCcchhhhhhhhhhcCcHHH-HHHHHHHHHHHHH-
Confidence 111 0 00 11 27777775432 234577777665432110000 0000111111100
Q ss_pred CcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC--CCHHHH
Q 021147 234 PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES--SDPENE 289 (317)
Q Consensus 234 ~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts--LD~~t~ 289 (317)
.+ . .++|+|++||+.+|||++ ++++|||++ ||+...
T Consensus 109 -------~~-~--------~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 109 -------RY-L--------HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV 146 (301)
T ss_dssp -------HH-H--------HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH
T ss_pred -------HH-H--------HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH
Confidence 11 1 689999999999999985 999999974 999874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-16 Score=144.39 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=87.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+++++.+++|++++|+||||||||||++.|+|.+. |.+| .|.+.+.+ .
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e-------------------------~ 74 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLE-------------------------E 74 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESS-------------------------S
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCc-------------------------C
Confidence 999999999999999999999999999999999999 8777 67654322 2
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH-cCCCcccCCCCCCEEEEecc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT-FNCPYLSFRDDKPVVVVTHG 250 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~~l~~~~~~~i~~hg 250 (317)
+...+.++ +..+.+... .++.+++..+.. ..+...+++.. +.. ....+...-
T Consensus 75 ~~~~~~~r-------~~~~~~~~~-----~~~~~~l~~~~~-------~~~~~~~~~~~~l~~--------~~l~i~~~~ 127 (296)
T 1cr0_A 75 SVEETAED-------LIGLHNRVR-----LRQSDSLKREII-------ENGKFDQWFDELFGN--------DTFHLYDSF 127 (296)
T ss_dssp CHHHHHHH-------HHHHHTTCC-----GGGCHHHHHHHH-------HHTHHHHHHHHHHSS--------SCEEEECCC
T ss_pred CHHHHHHH-------HHHHHcCCC-----hhhccccccCCC-------CHHHHHHHHHHHhcc--------CCEEEECCC
Confidence 33334333 222222211 111222322110 00111122222 110 111111110
Q ss_pred chhcCcHHH-HHhhcccceeccccceeeccCCCC-CCH-------HHHHHHHHHHHHHHHh
Q 021147 251 DLLSLTDRA-RIRTYLGELLGIPPAKQIFDIPES-SDP-------ENELIIVDMLRYCLEH 302 (317)
Q Consensus 251 ~~~~LSgG~-~qRl~iaral~~~p~ilIlDEPts-LD~-------~t~~~l~~~l~~l~~~ 302 (317)
..+|.++ +||+. ++++..+|+++|+|||++ ++. .....+.+.|+++.+.
T Consensus 128 --~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~ 185 (296)
T 1cr0_A 128 --AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS 185 (296)
T ss_dssp --CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2467776 66666 889999999999999999 643 4445667777776543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-17 Score=153.86 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=88.2
Q ss_pred ceeeeeEecC--CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC----cEEEECcccCceeeEecccCCCCcccccce
Q 021147 93 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSSVGDGTYFLQEYTIPRGVRHGEL 166 (317)
Q Consensus 93 L~~isl~I~~--Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~----G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~ 166 (317)
.+.|+++|.+ |+.++|+||||||||||+|+|+|+++ |++ |+|+++++... .
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~------------------~ 214 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGG------------------D 214 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSS------------------C
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCC------------------C
Confidence 5679999999 99999999999999999999999999 888 87776421000 0
Q ss_pred eeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccC--CCCC
Q 021147 167 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSF--RDDK 242 (317)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l--~~~~ 242 (317)
.. .+....+ .. |++++|++.++ ..++++|+.+++.. ....+........... .... ...+
T Consensus 215 ~~-~~~~~~~-~~-------I~~~~q~~~~~--~~t~~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 278 (365)
T 1lw7_A 215 EQ-AMQYSDY-PQ-------MALGHQRYIDY--AVRHSHKIAFIDTD-----FITTQAFCIQYEGKAHPFLDSMIKEYPF 278 (365)
T ss_dssp TT-SSCTTTH-HH-------HHHHHHHHHHH--HHHHCSSEEEESSC-----HHHHHHHHHHHHSCCCHHHHHHHHHSCC
T ss_pred cc-cCChhHH-HH-------HHHHHHHHHHH--HHhccCCEEEEeCC-----chHHHHHHHHHcCCCCHHHHHHHhhcCC
Confidence 01 1222223 23 77778876544 35788887654311 0011111111111100 0000 0123
Q ss_pred CEEEE--------eccchhcCcHHHHHhhccccee---cc--ccceeeccCCCC
Q 021147 243 PVVVV--------THGDLLSLTDRARIRTYLGELL---GI--PPAKQIFDIPES 283 (317)
Q Consensus 243 ~~~i~--------~hg~~~~LSgG~~qRl~iaral---~~--~p~ilIlDEPts 283 (317)
.+++. ..| ..+|+|++||.+++|++ .. +++++++|||+.
T Consensus 279 ~lllLdE~~~p~~~~g--~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~ 330 (365)
T 1lw7_A 279 DVTILLKNNTEWVDDG--LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSY 330 (365)
T ss_dssp SEEEEEECCCC-------------CCSHHHHHHHHHHHHHGGGCCCEEEECSSH
T ss_pred CEEEECCCCCCcccCC--CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCH
Confidence 33332 223 57899999999999999 66 899999999975
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-16 Score=154.93 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=80.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.++|+++||++.|++.. + ++++||+| +|+|+||||||||+++|+|+.. +..| .+|..
T Consensus 9 ~~~l~~~~l~~~y~~~~-v-----l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-----~~~~---~~~~~--- 65 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS-V-----KRGFEFTL------MVVGESGLGKSTLINSLFLTDL-----YSPE---YPGPS--- 65 (418)
T ss_dssp ------CCCCCCTTTTT-C-----C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-----CCCC---CCSCC---
T ss_pred cCcEEEEecceeECCEE-E-----ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-----CCCC---CCCcc---
Confidence 35799999999997543 3 99999998 9999999999999999999987 4443 12211
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+..... .....+++++|...++ ..+||+||+.++..... . .....+.
T Consensus 66 -------------------~~~~~t--------~~~~~i~~v~q~~~~~-~~Ltv~Dt~g~~~~~~~--~---~~~~~i~ 112 (418)
T 2qag_C 66 -------------------HRIKKT--------VQVEQSKVLIKEGGVQ-LLLTIVDTPGFGDAVDN--S---NCWQPVI 112 (418)
T ss_dssp ------------------------C--------CEEEEEECC------C-EEEEEEECC----------------CHHHH
T ss_pred -------------------cCCccc--------eeeeeEEEEEecCCcc-cceeeeechhhhhhccc--h---hhHHHHH
Confidence 000000 0011267777765433 24678888766532111 0 0011121
Q ss_pred HHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc---eeeccCCC-C-CCHHHH
Q 021147 229 TTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA---KQIFDIPE-S-SDPENE 289 (317)
Q Consensus 229 ~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~---ilIlDEPt-s-LD~~t~ 289 (317)
..+. ..++.+++||+++||+++.+|+ ++++|||| + ||+...
T Consensus 113 ~~i~--------------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 113 DYID--------------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHH--------------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred HHHH--------------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 1110 2456677889999999999999 99999999 6 998764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-17 Score=165.63 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=89.7
Q ss_pred ceEEEeEEEEcCCCCccccccCceee----------eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCC-cCcEE
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLS----------DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQV 139 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~i----------sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p-~~G~I 139 (317)
.++++||++.|++..... |+.+ +|+++. +|||||||||||||+++|+|++. | ++|.|
T Consensus 10 ~i~~~~l~~~~~~~~r~l----l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~v 77 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPC----IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIV 77 (608)
T ss_dssp ----------CHHHHHHH----HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------C
T ss_pred hhhhhhhhHHHHHHHHHH----HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeE
Confidence 588999999996432110 3323 467765 99999999999999999999998 7 79999
Q ss_pred EECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 140 TYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 140 ~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
+++|.+... ........++. .+||++|++.+++ ..+|.+|+.+..
T Consensus 78 t~~g~~i~~-------------------~~~~~~~~~~~-------~i~~v~Q~~~l~~-~~tv~e~i~~~~-------- 122 (608)
T 3szr_A 78 TRCPLVLKL-------------------KKLVNEDKWRG-------KVSYQDYEIEISD-ASEVEKEINKAQ-------- 122 (608)
T ss_dssp CCSCEEEEE-------------------EECSSSSCCEE-------EESCC---CCCCC-HHHHHTTHHHHH--------
T ss_pred EEcCEEEEE-------------------ecCCcccccee-------EEeeecccccCCC-HHHHHHHHHHHH--------
Confidence 999976210 01111112222 3999999887554 578988886432
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCC------CC-CCHHHHHHH
Q 021147 220 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP------ES-SDPENELII 292 (317)
Q Consensus 220 ~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEP------ts-LD~~t~~~l 292 (317)
..++.. + ..+| .+++.++.+....|+++++||| |+ ||+..+..+
T Consensus 123 ---------~~~~~~------~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i 173 (608)
T 3szr_A 123 ---------NAIAGE------G-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI 173 (608)
T ss_dssp ---------HHHHCS------S-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred ---------HHhcCC------c-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence 111110 0 1122 1346677777789999999999 99 999999999
Q ss_pred HHHHHHHHH
Q 021147 293 VDMLRYCLE 301 (317)
Q Consensus 293 ~~~l~~l~~ 301 (317)
.++++++..
T Consensus 174 ~~li~~~l~ 182 (608)
T 3szr_A 174 KTLIKKYIQ 182 (608)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=144.27 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=45.7
Q ss_pred chh-cCcHHHHHhhcccceec---------cccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 251 DLL-SLTDRARIRTYLGELLG---------IPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 251 ~~~-~LSgG~~qRl~iaral~---------~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+. .||+||+||+++|++|+ .+|+++|||||++ ||+..+..+.+.+.++
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 345 79999999999999999 8999999999999 9999999999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-16 Score=153.92 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHH-----HHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPE-----NELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~-----t~~~l~~~l~~l~~ 301 (317)
..||+||+||+++|+++..+|+++|+| |++ ||.. .+..+.++++.+.+
T Consensus 352 ~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 352 ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999 999 9999 88999888888754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-15 Score=140.20 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC-hHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD-SSSLRNRM 180 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~-~~~~r~~~ 180 (317)
+|++++|+||||||||||+++|+|++. |++|+|.+.|.+ ..... .++++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D----------------------~~r~~a~~ql~~~~ 153 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGD----------------------TFRAAGGTQLSEWG 153 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCC----------------------CSSTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeec----------------------CCChhHHHHHHHHH
Confidence 689999999999999999999999999 999999999986 21111 11221110
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHH
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRAR 260 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~ 260 (317)
....+++++|++.++ +..++++|+.+......+ ..++..++. . |-....++...+
T Consensus 154 --~~~~i~~v~q~~~~~-p~~~v~~~v~~~~~~~~d--------~~llDt~G~-----~---------~~~~~~~~eLs~ 208 (304)
T 1rj9_A 154 --KRLSIPVIQGPEGTD-SAALAYDAVQAMKARGYD--------LLFVDTAGR-----L---------HTKHNLMEELKK 208 (304)
T ss_dssp --HHHTCCEECCCTTCC-HHHHHHHHHHHHHHHTCS--------EEEECCCCC-----C---------TTCHHHHHHHHH
T ss_pred --HhcCceEEEeCCCCC-HHHHHHHHHHHHHhCCCC--------EEEecCCCC-----C---------CchHHHHHHHHH
Confidence 012489999987644 356788887643210000 000001110 0 101133455568
Q ss_pred Hhhcccceeccccc--eeeccC
Q 021147 261 IRTYLGELLGIPPA--KQIFDI 280 (317)
Q Consensus 261 qRl~iaral~~~p~--ilIlDE 280 (317)
||+++|||+..+|. +++||.
T Consensus 209 ~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEET
T ss_pred HHHHHHHhhcCCCCeEEEEEcH
Confidence 99999999999999 566663
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-16 Score=152.31 Aligned_cols=149 Identities=12% Similarity=-0.033 Sum_probs=90.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|++++ +++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.+.. +
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e-----------------------~ 177 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE-----------------------Y 177 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCC-----------------------S
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHh-----------------------h
Confidence 45544 78999999999999999999999999999 87 899987665411 0
Q ss_pred ChHHHHHHHHHhhhhcccccc-----ccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHHHcCC-C----------
Q 021147 172 DSSSLRNRMRCKAHKIGCEPS-----VIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVATTFNC-P---------- 234 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q-----~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~~~~l-~---------- 234 (317)
. ++. .+++++| ++..| ..+++.|+...... .-++..+.+.+..+++.+.. +
T Consensus 178 ~---~~~-------~~~~v~Q~~~g~~~~~~--~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 178 V---FKH-------KKSIVNQREVGEDTKSF--ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp C---CCC-------SSSEEEEEEBTTTBSCS--HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS
T ss_pred h---hcc-------CceEEEeeecCCCHHHH--HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch
Confidence 0 000 1333443 22222 22334443321000 00000011112222222211 0
Q ss_pred --------------------cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccce--eeccCCCC-CCHH
Q 021147 235 --------------------YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAK--QIFDIPES-SDPE 287 (317)
Q Consensus 235 --------------------~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~i--lIlDEPts-LD~~ 287 (317)
...++..+.++|..++ ..+|+| ||+++++++..+|++ +|+|++++ +|..
T Consensus 246 ~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl--~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 246 AIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRL--LPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEE--EECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEe--EecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 0012346777777776 678888 889999999999999 99999999 8865
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-16 Score=136.52 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
|++++|+||||||||||+++|+|+++ ++| |.++|.+ ..++. .++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~----------------------~~~~~--~~~----- 44 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFY----------------------TEEVR--QGG----- 44 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEE----------------------CCEEE--TTS-----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEe----------------------cchhH--hhh-----
Confidence 78999999999999999999999986 368 8887754 11111 112
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
+++||++|+.. .. ..+++ .... ..+. ......+++.+ ..+|+||+++
T Consensus 45 --~~ig~~~~~~~---g~---~~~l~---~~~~----------------~~~~----~~~~~~v~~~~--~~ls~~er~~ 91 (189)
T 2i3b_A 45 --RRIGFDVVTLS---GT---RGPLS---RVGL----------------EPPP----GKRECRVGQYV--VDLTSFEQLA 91 (189)
T ss_dssp --SEEEEEEEETT---SC---EEEEE---ECCC----------------CCCS----SSCCEESSSSE--ECHHHHHTTT
T ss_pred --ceEEEEEEecc---cc---eehhh---cccc----------------cCCc----cccccccceEE--EcchHHHHHH
Confidence 23898888641 10 01111 0000 0000 00111222222 6899999998
Q ss_pred h-cccc---eeccccceeeccC--CCC-CCHHHHHHHHHHHHH
Q 021147 263 T-YLGE---LLGIPPAKQIFDI--PES-SDPENELIIVDMLRY 298 (317)
Q Consensus 263 l-~iar---al~~~p~ilIlDE--Pts-LD~~t~~~l~~~l~~ 298 (317)
+ ++.+ |+..+|+++|+|| |++ +|+...+.+.+++..
T Consensus 92 ~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 92 LPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp TTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred HHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 8 4455 6899999999999 888 888877766666653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-17 Score=154.42 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=57.8
Q ss_pred CceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 70 ~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.+|+++|+++.|+.. .+ |+++||++++|++++|+|+||||||||+++|+|++. |++|+|.+.|.+
T Consensus 28 ~~ie~~~~~~~~~~~-~~-----l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d 92 (337)
T 2qm8_A 28 TLAESRRADHRAAVR-DL-----IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVD 92 (337)
T ss_dssp HHHTCSSHHHHHHHH-HH-----HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred HHHeeCCcccccChH-HH-----HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEc
Confidence 357888999999543 33 999999999999999999999999999999999999 999999998864
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=133.19 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=46.0
Q ss_pred chhcCcHHHHH------hhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARI------RTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 251 ~~~~LSgG~~q------Rl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
.+..|||||+| |+++|++++.+|+++||||||+ ||+.....+.+.|+++..
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~ 302 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 34789999999 6788899999999999999999 999999999999988754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=143.43 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=46.7
Q ss_pred hhcC-cHHHHHhhcccceecccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 252 LLSL-TDRARIRTYLGELLGIPP--AKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 252 ~~~L-SgG~~qRl~iaral~~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
+..| ||||+||++|||+++.+| +++||||||+ ||+.+...+.+.|+++.+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~ 447 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD 447 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC
Confidence 3567 999999999999999999 9999999999 999999999999999864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-14 Score=150.98 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=41.3
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHH-HHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIV-DMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~-~~l~~l~~ 301 (317)
..+|+|++|+..++++ +.+|+++|||||++ +|+.....+. ..++.+.+
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~ 783 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR 783 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999988 78999999999999 9999988887 56666543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-15 Score=140.18 Aligned_cols=121 Identities=15% Similarity=0.074 Sum_probs=81.0
Q ss_pred ceee-eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC----cE-EEECcccCceeeEecccCCCCcccccce
Q 021147 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQ-VTYNSSVGDGTYFLQEYTIPRGVRHGEL 166 (317)
Q Consensus 93 L~~i-sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~----G~-I~i~g~~~~~~~~~Q~~~l~~~~~~~~~ 166 (317)
|+.+ ++.|++|++++|+||||||||||++.|++.+... |++ |+ |++++.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~--------------------- 175 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTEN--------------------- 175 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSS---------------------
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCC---------------------
Confidence 6665 7899999999999999999999999999998311 665 67 8888764
Q ss_pred eeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 167 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
. .. +++ +++++|...++.. ++.+|+.+...+ .+..+.++.+.+..+ +
T Consensus 176 -~--~~----~~~-------i~~i~q~~~~~~~--~v~~ni~~~~~~---~~~~~~~~l~~~~~~------------~-- 222 (349)
T 1pzn_A 176 -T--FR----PER-------IREIAQNRGLDPD--EVLKHIYVARAF---NSNHQMLLVQQAEDK------------I-- 222 (349)
T ss_dssp -C--CC----HHH-------HHHHHHTTTCCHH--HHGGGEEEEECC---SHHHHHHHHHHHHHH------------H--
T ss_pred -C--CC----HHH-------HHHHHHHcCCCHH--HHhhCEEEEecC---ChHHHHHHHHHHHHH------------H--
Confidence 1 11 223 5666665543332 677777654321 122333333332221 0
Q ss_pred EeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHH
Q 021147 247 VTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPE 287 (317)
Q Consensus 247 ~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~ 287 (317)
.+||+|+ .+|+++|+|||++ +|+.
T Consensus 223 ------~~lS~G~-----------~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 223 ------KELLNTD-----------RPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp ------HHSSSSS-----------SCEEEEEEETSSTTHHHH
T ss_pred ------HHhcccc-----------CCCCEEEEeCchHhhhhh
Confidence 4677776 7899999999999 9986
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-16 Score=131.67 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=50.4
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+|+++.|++. .+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.+
T Consensus 11 ~~~~~~~g~~-~~-----l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~ 69 (158)
T 1htw_A 11 EFSMLRFGKK-FA-----EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYT 69 (158)
T ss_dssp HHHHHHHHHH-HH-----HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTT
T ss_pred HHHHHHHHHH-HH-----HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEe
Confidence 4567777533 33 99999999999999999999999999999999998 357999988875
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-15 Score=129.98 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=35.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCC--CCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK--FASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~--~~p~~G~I~i~g~ 144 (317)
-|++|++++|+||||||||||+++|+|++.++. .....+.|++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 799999999999999999999999999776220 0013346666654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-14 Score=146.27 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=88.5
Q ss_pred CCceEEEeEEEEcC--CCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC
Q 021147 69 GSLTDAKNKILSYT--PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (317)
Q Consensus 69 ~~~I~~~nls~~y~--~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~ 146 (317)
.+.|++++...-+- +...+ ++|+||+ |++++|+||||||||||+|+|+|+... ++.|.+. +
T Consensus 548 ~~~i~i~~~rHP~le~~~~~v-----l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~----~~~G~~v----p- 610 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFV-----PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL----AQVGSFV----P- 610 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCC-----CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH----HTTTCCB----S-
T ss_pred CCcEEEEEeECceEccCCceE-----eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh----cccCcee----e-
Confidence 34578877732220 11233 9999999 999999999999999999999999741 4555432 0
Q ss_pred ceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 226 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 226 (317)
. . + ..+|+++| +|. .+++.+|+.
T Consensus 611 -----------------------a-~----~-------~~i~~v~~---i~~-~~~~~d~l~------------------ 633 (765)
T 1ewq_A 611 -----------------------A-E----E-------AHLPLFDG---IYT-RIGASDDLA------------------ 633 (765)
T ss_dssp -----------------------S-S----E-------EEECCCSE---EEE-ECCC-----------------------
T ss_pred -----------------------h-h----c-------cceeeHHH---hhc-cCCHHHHHH------------------
Confidence 0 0 0 12777766 221 122222211
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhccccee--ccccceeeccCC---CC-CCHHHH-HHHHHHHHH
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELL--GIPPAKQIFDIP---ES-SDPENE-LIIVDMLRY 298 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral--~~~p~ilIlDEP---ts-LD~~t~-~~l~~~l~~ 298 (317)
..+|+++++++.+++++ +.+|+++||||| |+ +|+.+. ..+.+.+.+
T Consensus 634 --------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 634 --------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE 686 (765)
T ss_dssp ---------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh
Confidence 24688899999999999 999999999999 99 999876 467776665
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-15 Score=144.87 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=80.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++||.|++|++++|+||||||||||+++|+|+++ |++|.|.++|.. ++.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~~------------------------e~~ 215 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDVP------------------------ELF 215 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESSS------------------------CCC
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCcc------------------------ccC
Confidence 399999999999999999999999999999999999 999999998753 111
Q ss_pred hHHHHHHHHHhhhhccccc-ccccc-ccchhhHHHHHHhhhccCCCC----hHHHHHHHHHHHHcCCCcccCCCCCCEEE
Q 021147 173 SSSLRNRMRCKAHKIGCEP-SVIRK-VNFVIFVVDGLAVLKSMEGDS----DVEKQYNQIVATTFNCPYLSFRDDKPVVV 246 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~-Q~~~~-~~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~a~~~~l~~~~l~~~~~~~i 246 (317)
....+. .+++++ |+..+ .....|+++|+........+. +.......++++. ++.|+.+.+
T Consensus 216 ~~~~~~-------~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~-------l~~g~~~~l 281 (361)
T 2gza_A 216 LPDHPN-------HVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINV-------AASGHGGSI 281 (361)
T ss_dssp CTTCSS-------EEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHH-------HHTTCCSCE
T ss_pred ccccCC-------EEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHH-------HhcCCCeEE
Confidence 111111 278888 76543 113568999998764322110 0001123344444 334666645
Q ss_pred Ee-ccchhcCcHHHHHhhcccc
Q 021147 247 VT-HGDLLSLTDRARIRTYLGE 267 (317)
Q Consensus 247 ~~-hg~~~~LSgG~~qRl~iar 267 (317)
++ |. .-+.+..+|+....
T Consensus 282 ~t~H~---~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 282 TSCHA---GSCELTFERLALMV 300 (361)
T ss_dssp EEEEC---SSHHHHHHHHHHHH
T ss_pred EEECC---CCHHHHHHHHHHHH
Confidence 44 54 34677777776543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-14 Score=127.71 Aligned_cols=138 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNR 179 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~ 179 (317)
.++|++++|+||||||||||+++|+|+++|. ++..|.|.++|.. ++.... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~~-------------------------~~~~~~-~- 69 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGFH-------------------------LDNRLL-E- 69 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGGB-------------------------CCHHHH-G-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCCc-------------------------CCHHHH-H-
Confidence 5789999999999999999999999999821 1235666666543 111111 0
Q ss_pred HHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHH
Q 021147 180 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRA 259 (317)
Q Consensus 180 ~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~ 259 (317)
.++...... .....+ .....+.+..+. ..+...+.+.+++ ..+|+|+
T Consensus 70 ------~~~~~~~~~----------------~~~~~~----~~~~~~~l~~l~-----~~~~i~~p~~d~~--~~~~~g~ 116 (208)
T 3c8u_A 70 ------PRGLLPRKG----------------APETFD----FEGFQRLCHALK-----HQERVIYPLFDRA--RDIAIAG 116 (208)
T ss_dssp ------GGTCGGGTT----------------SGGGBC----HHHHHHHHHHHH-----HCSCEEEEEEETT--TTEEEEE
T ss_pred ------HhcccccCC----------------CCchhh----HHHHHHHHHHHh-----cCCceecccCCcc--ccCCCCC
Confidence 022111000 000000 001122222211 0013344456666 6789999
Q ss_pred HHhhccc-ceeccccceeeccCCC-----------C-CCHHHHHHHHHHHHHH
Q 021147 260 RIRTYLG-ELLGIPPAKQIFDIPE-----------S-SDPENELIIVDMLRYC 299 (317)
Q Consensus 260 ~qRl~ia-ral~~~p~ilIlDEPt-----------s-LD~~t~~~l~~~l~~l 299 (317)
+||++++ ++++.++.++++|||. . +|...+..+...+++.
T Consensus 117 ~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 117 AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH
T ss_pred ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 9999998 9999999999999974 4 6777777666666664
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-15 Score=129.91 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=82.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCC--------CCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDK--------FASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~--------~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++|++++|+||||||||||+++|+|+++... -.|..|+ ++|.+ +...+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~----------------------~~~~~ 57 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD----------------------YYFVT 57 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT----------------------BEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce----------------------EEEcc
Confidence 5899999999999999999999999985100 0144554 35543 33456
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEe--cc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT--HG 250 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~--hg 250 (317)
...+++. + +|+..++.. ++.+|+ ++. ..+.+.++++.... .++-. .|
T Consensus 58 ~~~~~~~-------i---~~~~~l~~~--~~~~n~-~g~--------~~~~i~~~~~~~~~----------~~~~~~~~g 106 (198)
T 1lvg_A 58 REMMQRD-------I---AAGDFIEHA--EFSGNL-YGT--------SKEAVRAVQAMNRI----------CVLDVDLQG 106 (198)
T ss_dssp HHHHHHH-------H---HHTCEEEEE--EETTEE-EEE--------EHHHHHHHHHTTCE----------EEEECCHHH
T ss_pred HHHHHHH-------H---HcCCCEeee--eecCcc-CCC--------CHHHHHHHHHcCCc----------EEEECCHHH
Confidence 6666654 2 344433332 344443 221 12234455443111 11100 11
Q ss_pred chhcCcHHHHHhhcccc-eeccccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 251 DLLSLTDRARIRTYLGE-LLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iar-al~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
... .+++-..+| +++.+|++++|||+++ +|..+++.+.+.|.++..
T Consensus 107 --~~~---~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 107 --VRS---IKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp --HHH---HTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred --HHH---HHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 110 111122677 7889999999999999 999999999998877654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-14 Score=131.49 Aligned_cols=145 Identities=13% Similarity=0.061 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHh---hcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~---Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
++++++|+||||||||||+++|+ |+.. |+.|+|.+++.+ . . ..+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~----------------------~---~-~~~~~ 74 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK----------------------A---S-TEVGE 74 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH----------------------T---T-CHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh----------------------c---C-ChHHH
Confidence 47999999999999999999999 9988 888988866542 0 0 11222
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhc---------cCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEE--
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS---------MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV-- 247 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~-- 247 (317)
. ++.++|+..++ ...++.+++..... ...... ..+...+...... +..+.+-
T Consensus 75 ~-------i~~~~~~~~~~-~~~~v~~~l~~~l~~~~~~~~il~g~~~~--~~~~~~l~~~~~~-------~~vi~L~~~ 137 (246)
T 2bbw_A 75 M-------AKQYIEKSLLV-PDHVITRLMMSELENRRGQHWLLDGFPRT--LGQAEALDKICEV-------DLVISLNIP 137 (246)
T ss_dssp H-------HHHHHHTTCCC-CHHHHHHHHHHHHHTCTTSCEEEESCCCS--HHHHHHHHTTCCC-------CEEEEEECC
T ss_pred H-------HHHHHHcCCCC-CHHHHHHHHHHHHHhcCCCeEEEECCCCC--HHHHHHHHhhcCC-------CEEEEEECC
Confidence 2 34444443322 24567777754210 001111 1122222111111 0000000
Q ss_pred -----ec---cchhcCcHHHHHhhccccee-ccccceeecc----CCCC-CCHHHHHHHHHHHHHHHH
Q 021147 248 -----TH---GDLLSLTDRARIRTYLGELL-GIPPAKQIFD----IPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 248 -----~h---g~~~~LSgG~~qRl~iaral-~~~p~ilIlD----EPts-LD~~t~~~l~~~l~~l~~ 301 (317)
++ ..+..||| |+ +++ +.+|+++++| ||++ +|+.++..+.+.++++.+
T Consensus 138 ~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 138 FETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 00 01146888 45 788 8999999999 9999 999999999888887643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-14 Score=126.22 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=91.3
Q ss_pred ceeeee-EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl-~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+++.. .+++|++++|+||||||||||++.|++... +..|.|.+.+.+ .
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~-------------------------~ 61 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTE-------------------------E 61 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESS-------------------------S
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEcc-------------------------c
Confidence 888888 899999999999999999999999999998 778888865543 2
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
....+..++ ..+++.++.... +++.+.+... . ..+ + .+..
T Consensus 62 ~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~---~-----------~~~-~------~~~~------- 101 (235)
T 2w0m_A 62 SRDSIIRQA----KQFNWDFEEYIE--------KKLIIIDALM---K-----------EKE-D------QWSL------- 101 (235)
T ss_dssp CHHHHHHHH----HHTTCCCGGGBT--------TTEEEEECCC-------------------C------TTBC-------
T ss_pred CHHHHHHHH----HHhcchHHHHhh--------CCEEEEeccc---c-----------ccC-c------eeee-------
Confidence 233333321 236665553210 0000001000 0 000 0 0111
Q ss_pred hhcCcHHHHHhhcccceeccccc--eeeccCCCC-C--CHHHHHHHHHHHHHHHHh
Q 021147 252 LLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-S--DPENELIIVDMLRYCLEH 302 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-L--D~~t~~~l~~~l~~l~~~ 302 (317)
...|.++.++...+.+...+|+ ++|+|||++ + |+.....+.+.|+++.+.
T Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~ 156 (235)
T 2w0m_A 102 -VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK 156 (235)
T ss_dssp -SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh
Confidence 2347788776666666667999 999999998 7 998888888888887644
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-15 Score=145.89 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=91.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC---cc-
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN---SS- 144 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~---g~- 144 (317)
.+++++ ++.|++. . |+++||+|++|++ +||+||||||||||+|+|+|+.- .|.-... +.
T Consensus 16 ~l~~~~-~~~y~~~-~------L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~~~~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-P------DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPATHTQPGVQ 80 (427)
T ss_dssp -CCCCC-CC-CC---C------HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCE
T ss_pred eEEEee-EEEECCe-e------cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCCCCCccce
Confidence 467777 8888643 2 8999999999999 99999999999999999999952 1110000 00
Q ss_pred cCceeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC--C----h
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD--S----D 218 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~--~----~ 218 (317)
...++|++|++.+++. +||.+|+.++...... . .
T Consensus 81 ~~~i~~v~Q~~~l~~~----------------------------------------ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 81 LQSNTYDLQESNVRLK----------------------------------------LTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEEEEEC--CEEE----------------------------------------EEEEEEECCCC-CCHHHHSHHHHH
T ss_pred EeeEEEEeecCccccc----------------------------------------cchhhhhhhhhccccchhhhHHHH
Confidence 0123445554444333 3444444332210000 0 0
Q ss_pred HHHHHHHHHHHHc-CCCc--ccCCCCC-C--EEEEec-cchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHH
Q 021147 219 VEKQYNQIVATTF-NCPY--LSFRDDK-P--VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENEL 290 (317)
Q Consensus 219 ~~~~~~~~~a~~~-~l~~--~~l~~~~-~--~~i~~h-g~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~ 290 (317)
....+...++... ++.. ...++.. . +.++.. + ..|+... +.++++|..+++++++|+|+. |.+....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~--~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG--HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC--CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHH
Confidence 0112233333332 3210 0111111 1 222332 2 3466655 568888989999999999999 9888878
Q ss_pred HHHHHHHHHH
Q 021147 291 IIVDMLRYCL 300 (317)
Q Consensus 291 ~l~~~l~~l~ 300 (317)
.+.+.+++-+
T Consensus 196 ~l~~~I~~~L 205 (427)
T 2qag_B 196 KFKIKITSEL 205 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877633
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=131.48 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=44.6
Q ss_pred hcCcHHHHHhhcccceec----cccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLG----IPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~----~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
..|||||+||+++|++++ .+|+++|||||++ ||+.+...+.+.|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 384 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR 384 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh
Confidence 469999999999999999 5799999999999 99999999999998864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-15 Score=148.89 Aligned_cols=142 Identities=13% Similarity=-0.035 Sum_probs=85.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeec---
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIR--- 169 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~--- 169 (317)
|+++ + .++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+... . + +.+ ....+.
T Consensus 159 L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie~--~-----~-~~~--~q~~v~~~~ 221 (418)
T 1p9r_A 159 FRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIEF--D-----I-DGI--GQTQVNPRV 221 (418)
T ss_dssp HHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCCS--C-----C-SSS--EEEECBGGG
T ss_pred HHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccchh--c-----c-CCc--ceEEEcccc
Confidence 4555 3 37899999999999999999999999999 889999998875210 0 0 000 000000
Q ss_pred cCChHHHHHHHHHhhhhccccccccccc--c---chhhHHHHHHhhhcc------CCCChHHHHHHHHHHHHcCCCcccC
Q 021147 170 RSDSSSLRNRMRCKAHKIGCEPSVIRKV--N---FVIFVVDGLAVLKSM------EGDSDVEKQYNQIVATTFNCPYLSF 238 (317)
Q Consensus 170 ~~~~~~~r~~~~~~~~~ig~v~Q~~~~~--~---~~~tv~eni~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~l 238 (317)
++.. ...+ .+++.|+|..+ . ...|+.+++.+.... ....+ .......+..++++...
T Consensus 222 g~~f---~~~l------r~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~--~~~~i~rL~~lgl~~~~- 289 (418)
T 1p9r_A 222 DMTF---ARGL------RAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT--AVGAVTRLRDMGIEPFL- 289 (418)
T ss_dssp TBCH---HHHH------HHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS--SHHHHHHHHHHTCCHHH-
T ss_pred CcCH---HHHH------HHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh--HHHHHHHHHHcCCcHHH-
Confidence 0111 0000 12344776543 1 225888888764311 01111 11233345556653211
Q ss_pred CCCCCEEEEeccchhcCcHHHHHhhcccceeccccceee
Q 021147 239 RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQI 277 (317)
Q Consensus 239 ~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilI 277 (317)
. +..|||||+|| |||+++.+|++..
T Consensus 290 ----~--------~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----I--------SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----H--------HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----H--------HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1 16899999999 9999999999865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-14 Score=119.96 Aligned_cols=140 Identities=17% Similarity=0.102 Sum_probs=82.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.+ +.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~----------------------~~~~~~----- 50 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDD----------------------LWGYIK----- 50 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTH----------------------HHHTCC-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccc----------------------hhhhhh-----
Confidence 5789999999999999999999999997 447999998865 111100
Q ss_pred HHHHhhhhccccccccccccchhhHHHHHHhhhc-cC-CCChHHHHHHHHHHHHcCCCcccCCC-CCCEEEEeccchhcC
Q 021147 179 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-ME-GDSDVEKQYNQIVATTFNCPYLSFRD-DKPVVVVTHGDLLSL 255 (317)
Q Consensus 179 ~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~-~~~~~~~~~~~~~a~~~~l~~~~l~~-~~~~~i~~hg~~~~L 255 (317)
....++|++|... ...++.+|+.+... .. ..... .+..+....++. .+.. +... ..+
T Consensus 51 ----~~~~~~~~~~~~~---~~~~v~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~--~~~~~~~~~--------~~l 110 (191)
T 1zp6_A 51 ----HGRIDPWLPQSHQ---QNRMIMQIAADVAGRYAKEGYFV---ILDGVVRPDWLP--AFTALARPL--------HYI 110 (191)
T ss_dssp ----SSCCCTTSSSHHH---HHHHHHHHHHHHHHHHHHTSCEE---EECSCCCTTTTH--HHHTTCSCE--------EEE
T ss_pred ----cccccCCccchhh---hhHHHHHHHHHHHHHHhccCCeE---EEeccCcHHHHH--HHHhcCCCe--------EEE
Confidence 0012677777653 24577887754211 00 00000 000000000000 0000 2223 578
Q ss_pred cHHHHHhhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 256 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 256 SgG~~qRl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
|+|++|++.++|++.++|+++ +|+.....+.+.+..+
T Consensus 111 s~~~~~~v~~~R~~~r~~~~l-------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 111 VLRTTAAEAIERCLDRGGDSL-------SDPLVVADLHSQFADL 147 (191)
T ss_dssp EEECCHHHHHHHHHTTCTTSC-------CCHHHHHHHHHHTTCC
T ss_pred EecCCHHHHHHHHHhcCCCcc-------CCHHHHHHHHHHHhcc
Confidence 999999999999999988765 4666666666655443
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-13 Score=140.97 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=40.4
Q ss_pred CceEEEeEEEEcCC----CCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 70 SLTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 70 ~~I~~~nls~~y~~----~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
..|++++...-+-+ ...+ ++|+||++++|++++|+||||||||||+|++++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v-----~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFI-----PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCC-----CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceee-----cccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45777776544422 1233 999999999999999999999999999999943
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-13 Score=126.30 Aligned_cols=127 Identities=17% Similarity=0.016 Sum_probs=77.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRM 180 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~ 180 (317)
+++.+++|+|+||||||||+++|.+++. +. | .....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-----~~-g------~~~~~-------------------------------- 64 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-----EK-Y------GGEKS-------------------------------- 64 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HH-H------GGGSC--------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-----hc-C------CCCce--------------------------------
Confidence 3567999999999999999999999998 42 1 00000
Q ss_pred HHhhhhccccccccccccchhhHHHHHHhhhcc-------CCCChHHHHHHHHHHHHcCCCcccCCCC------CCEEEE
Q 021147 181 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-------EGDSDVEKQYNQIVATTFNCPYLSFRDD------KPVVVV 247 (317)
Q Consensus 181 ~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~l~~~------~~~~i~ 247 (317)
+.+|+|+..+++ .++.+|+.+.... .....-+.....+.++.+. .+ ..+.+.
T Consensus 65 ------~~iv~~D~f~~~--~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~-------~g~~t~~~~~v~~p 129 (290)
T 1odf_A 65 ------IGYASIDDFYLT--HEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIF-------NNNEHPDQDTVVLP 129 (290)
T ss_dssp ------EEEEEGGGGBCC--HHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHT-------C------CCEEEEC
T ss_pred ------EEEeccccccCC--hHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhh-------ccCccccCcceeec
Confidence 333356554443 3556666543210 0011112333444455432 23 222222
Q ss_pred eccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHH
Q 021147 248 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPEN 288 (317)
Q Consensus 248 ~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t 288 (317)
..+ ..+||||+||+++|++...+|+++|+|++++ +|+..
T Consensus 130 ~y~--~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYD--KSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEE--TTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred cCc--cccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 334 6899999999999843333999999999999 99853
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-14 Score=132.83 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=56.0
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEe-------------------cCCCEEEEEcCCCChHHHHHHHHhhcccC
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEN 129 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I-------------------~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p 129 (317)
..+|+++||++.|. .+ +++|||.+ ++|+++||+|+||||||||+++|+|++..
T Consensus 35 ~~~i~~~~v~~~y~---~~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---PL-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccchHhHHHHHH---HH-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45799999999993 33 89999988 99999999999999999999999999751
Q ss_pred CCCCCcCcEEEE---Ccc
Q 021147 130 DKFASERAQVTY---NSS 144 (317)
Q Consensus 130 ~~~~p~~G~I~i---~g~ 144 (317)
. |++|+|.+ ||.
T Consensus 107 ~---~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 107 W---PEHRRVELITTDGF 121 (308)
T ss_dssp S---TTCCCEEEEEGGGG
T ss_pred C---CCCCeEEEEecCCc
Confidence 1 57899998 765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-13 Score=132.38 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=64.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
-+++||++++|++++|+|+||||||||+++|+|++. |++|+|.++|.+. .+...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~---------------------~r~aa 336 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDT---------------------FRAAA 336 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCT---------------------TCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcc---------------------cchhh
Confidence 468999999999999999999999999999999999 9999999977541 00000
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhh
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 210 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~ 210 (317)
...++.. .....|+|++|...++ ...++++|+.++
T Consensus 337 ~eQL~~~--~~r~~I~vV~Q~~~~~-p~~tV~e~l~~a 371 (503)
T 2yhs_A 337 VEQLQVW--GQRNNIPVIAQHTGAD-SASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHH--HHHHTCCEECCSTTCC-HHHHHHHHHHHH
T ss_pred HHHHHHH--HHhcCceEEecccCcC-HHHHHHHHHHHH
Confidence 0111110 0123499999986543 467888888764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-14 Score=129.09 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=90.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++++++++| ++|+||||||||||+|+|+|.+. + |.|.++|.+ +....
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~----------------------l~~~~ 84 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPE----------------------LLNMY 84 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTT----------------------TCSST
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHH----------------------HHhhh
Confidence 88999999999 99999999999999999999987 5 689988875 22222
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
....++. +++++|......+.+++.|++......... ... .. .. ... .. ..
T Consensus 85 ~~~~~~~-------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~-----~~~----~~--~~--~~~-~~--------~l 135 (274)
T 2x8a_A 85 VGESERA-------VRQVFQRAKNSAPCVIFFDEVDALCPRRSD-----RET----GA--SV--RVV-NQ--------LL 135 (274)
T ss_dssp THHHHHH-------HHHHHHHHHHTCSEEEEEETCTTTCC--------------------CT--THH-HH--------HH
T ss_pred hhHHHHH-------HHHHHHHHHhcCCCeEeeehhhhhhcccCC-----Ccc----hH--HH--HHH-HH--------HH
Confidence 2233333 677777543223334556666532211000 000 00 00 000 00 11
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCC------------C-CCHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPE------------S-SDPENELIIVDML 296 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPt------------s-LD~~t~~~l~~~l 296 (317)
..||||++||..+++|+..+|+++ |+|. . -|...+..+.+.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 589999999999999999999864 8763 2 3677776666544
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=121.55 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=58.4
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRN 178 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~ 178 (317)
..++|++++|+||||||||||++.|+|++. |++|+|.+.|.+ ........
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D----------------------~~r~~a~e--- 174 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASD----------------------TFRAGAIE--- 174 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC----------------------CSSTTHHH---
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeec----------------------ccccchHH---
Confidence 447899999999999999999999999999 999999999876 22222111
Q ss_pred HHHHhhhhcc--ccccccccccchhhHHHHHHhh
Q 021147 179 RMRCKAHKIG--CEPSVIRKVNFVIFVVDGLAVL 210 (317)
Q Consensus 179 ~~~~~~~~ig--~v~Q~~~~~~~~~tv~eni~~~ 210 (317)
+...+.+++| +++|...+ .+..++++|+.++
T Consensus 175 ql~~~~~~~gv~~v~q~~~~-~p~~~v~e~l~~~ 207 (328)
T 3e70_C 175 QLEEHAKRIGVKVIKHSYGA-DPAAVAYDAIQHA 207 (328)
T ss_dssp HHHHHHHHTTCEEECCCTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEeccccC-CHHHHHHHHHHHH
Confidence 1112223366 77887653 3467888888654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-12 Score=115.22 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=28.1
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|++++|+||||||||||++.+++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999999999765
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-12 Score=122.15 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=45.1
Q ss_pred EeEEEEcCCCCccccccCceeeee-------EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCc-CcEEEEC
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYN 142 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl-------~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~-~G~I~i~ 142 (317)
.+++++|....... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...
T Consensus 92 ~~~~iR~~~~~~~~----l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~ 158 (356)
T 3jvv_A 92 AGAVFRTIPSKVLT----MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTI 158 (356)
T ss_dssp EEEEEEEECCSCCC----TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEE
T ss_pred cEEEEEECCCCCCC----HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEc
Confidence 46777773332221 677766 778999999999999999999999999999 76 5666543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-13 Score=127.47 Aligned_cols=122 Identities=14% Similarity=-0.020 Sum_probs=74.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC-cccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~-g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
++++++. .+|++++|+||||||||||+|+|+|+... |.+|+|.++ |.. ..
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g----------------------~~-- 256 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLG----------------------QH-- 256 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC-----------------------------------
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCC----------------------cc--
Confidence 7888875 47999999999999999999999999851 568999876 543 10
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
. .....+++++|+..++. ..++.++.. ...........+.++++.+++.. +. +...
T Consensus 257 t---------t~~~~i~~v~q~~~l~d-tpgv~e~~l----~~l~~~e~~~~~~e~l~~~gl~~--f~-~~~~------- 312 (358)
T 2rcn_A 257 T---------TTAARLYHFPHGGDVID-SPGVREFGL----WHLEPEQITQGFVEFHDYLGHCK--YR-DCKH------- 312 (358)
T ss_dssp -----------CCCEEEECTTSCEEEE-CHHHHTCCC----CCCCHHHHHHTSGGGGGGTTCSS--ST-TCCS-------
T ss_pred c---------eEEEEEEEECCCCEecC-cccHHHhhh----cCCCHHHHHHHHHHHHHHcCCch--hc-CCCc-------
Confidence 0 01123888888876543 567776411 11111122233445566666532 22 2333
Q ss_pred hhcCcHHHHHhhccccee
Q 021147 252 LLSLTDRARIRTYLGELL 269 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral 269 (317)
..+| |++||+++|+++
T Consensus 313 -~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 313 -DADP-GCAIREAVENGA 328 (358)
T ss_dssp -SSCT-TCHHHHHHHHTS
T ss_pred -ccCC-HHHHHHHHHhcC
Confidence 5899 999999999886
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-12 Score=134.06 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=33.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+||+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-14 Score=133.30 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=34.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc--------cCCCCCCcCcEEEECccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSV 145 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~--------~p~~~~p~~G~I~i~g~~ 145 (317)
++++|+|+||||||||+|.|.|+. . |+.|+|.+||.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHH
Confidence 589999999999999999999997 5 899999999975
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-13 Score=119.58 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=77.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++++++++| ++|+||||||||||+++|++... .|.|.+++.+ +....
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~----------------------~~~~~ 89 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSD----------------------FVEMF 89 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHH----------------------HHHSC
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHH----------------------HHHHH
Confidence 89999999999 99999999999999999999875 6788888764 21111
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
....++. ++.++|........+++.|++. ++...............+.+..+ .
T Consensus 90 ~~~~~~~-------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-----l-------------- 143 (254)
T 1ixz_A 90 VGVGAAR-------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-----L-------------- 143 (254)
T ss_dssp TTHHHHH-------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-----H--------------
T ss_pred hhHHHHH-------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-----H--------------
Confidence 1222333 4455554322222345667774 32211110000111122222211 0
Q ss_pred hhcCcHHHHHhhcccceeccccceeeccC
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAKQIFDI 280 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~ilIlDE 280 (317)
..||||++||..+++|+..+|++ +|+
T Consensus 144 -~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 144 -VEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp -HHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred -HHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 46889999999999999998865 454
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-12 Score=123.58 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=45.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~ 66 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTT
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEE
Confidence 9999999999 9999999999999999999999999 999999999974
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-13 Score=121.81 Aligned_cols=125 Identities=13% Similarity=0.093 Sum_probs=77.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
++++++++++| ++|+||||||||||+++|++... .|.|.+++.+ +....
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~----------------------~~~~~ 113 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSD----------------------FVEMF 113 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHH----------------------HHHST
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHH----------------------HHHHH
Confidence 88999999999 99999999999999999999875 6888888764 21111
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHh-hhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
....++. +++++|........+++.|++.. ................+.+..+ .
T Consensus 114 ~~~~~~~-------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-----l-------------- 167 (278)
T 1iy2_A 114 VGVGAAR-------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-----L-------------- 167 (278)
T ss_dssp TTHHHHH-------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-----H--------------
T ss_pred hhHHHHH-------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-----H--------------
Confidence 1222333 55555554322223456777743 2211110000011112222211 0
Q ss_pred hhcCcHHHHHhhcccceeccccce
Q 021147 252 LLSLTDRARIRTYLGELLGIPPAK 275 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~~~p~i 275 (317)
..||||++||..+++|+..+|++
T Consensus 168 -~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 168 -VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp -HHHTTCCTTCCEEEEEEESCTTS
T ss_pred -HHHhCCCCCCCEEEEEecCCchh
Confidence 46889999999999999998865
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-12 Score=135.58 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccc--eeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 223 YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPA--KQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 223 ~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~--ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
++.+.+..+++.... .+..+ .+|||||+||++|||||..+|+ ++||||||+ ||+.....+.+.|+++
T Consensus 443 ~~~~~L~~vgL~~l~--l~r~~--------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L 512 (916)
T 3pih_A 443 KRLEFLVDVGLEYLT--LSRSA--------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL 512 (916)
T ss_dssp HHHHHHHTTTCTTCB--TTSBG--------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcccc--ccCCc--------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 345566667763211 13444 7999999999999999999887 999999999 9999999999999998
Q ss_pred HHh------cCCCcchhhcccCCC
Q 021147 300 LEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 300 ~~~------~~~~~~~~~~~~~~~ 317 (317)
.+. ..|++..+.. +|+|
T Consensus 513 ~~~G~TvivVtHd~~~~~~-aD~i 535 (916)
T 3pih_A 513 RDLGNTVIVVEHDEEVIRN-ADHI 535 (916)
T ss_dssp TTTTCEEEEECCCHHHHHT-CSEE
T ss_pred HhcCCEEEEEeCCHHHHHh-CCEE
Confidence 542 4566655544 6653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-13 Score=126.06 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=73.0
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE---CcccCceeeEecccCCCCcccccceeeccCChH
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSS 174 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i---~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~ 174 (317)
+++.+|++++|+||||||||||+|+|. +.. |++|+|.+ +|++. .... .
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~----------------------t~~~-~ 210 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHT----------------------TTGV-R 210 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------C----------------------CCCE-E
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCc----------------------eeeE-E
Confidence 456789999999999999999999999 988 99999999 77641 1000 0
Q ss_pred HHHHHHHHhhhhccccccccccc--c--chhhHHHHH--Hhhh------ccCC--CChHHHHHHHHHHHHcCCCcccCCC
Q 021147 175 SLRNRMRCKAHKIGCEPSVIRKV--N--FVIFVVDGL--AVLK------SMEG--DSDVEKQYNQIVATTFNCPYLSFRD 240 (317)
Q Consensus 175 ~~r~~~~~~~~~ig~v~Q~~~~~--~--~~~tv~eni--~~~~------~~~~--~~~~~~~~~~~~a~~~~l~~~~l~~ 240 (317)
..+ ++.+|+++|.|.+. . ..+|+ +|+ .|.. .+.. ...+..+++.++++.++++... .+
T Consensus 211 ~~~------~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~-~~ 282 (302)
T 2yv5_A 211 LIP------FGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCER-YK 282 (302)
T ss_dssp EEE------ETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHH-HH
T ss_pred EEE------cCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHH-HH
Confidence 000 01277777776432 1 24566 666 3331 1111 1122234577888888874211 11
Q ss_pred CCCEEEEeccchhcCcHHHHHhhcccc
Q 021147 241 DKPVVVVTHGDLLSLTDRARIRTYLGE 267 (317)
Q Consensus 241 ~~~~~i~~hg~~~~LSgG~~qRl~iar 267 (317)
.|. ..|||..++++.+||
T Consensus 283 ~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 283 SYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHH---------HHTTCCCTTHHHHSS
T ss_pred HHH---------HHHHHHHHHHHHHhc
Confidence 233 578987677788887
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-11 Score=108.47 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=36.2
Q ss_pred ceeeee-EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl-~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
|+.+.. .+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 677765 799999999999999999999999999 5 4455555544
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=103.22 Aligned_cols=65 Identities=22% Similarity=0.191 Sum_probs=53.5
Q ss_pred hhcCcHHHHHhhccc------ceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 252 LLSLTDRARIRTYLG------ELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 252 ~~~LSgG~~qRl~ia------ral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.+|||||+||+++| ||++.+|+++||||||+ ||+.++..+.+.+.++.+. ..|+. .....+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEE
Confidence 479999999999876 89999999999999999 9999999999999987542 44555 344566653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-12 Score=120.58 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE---Cccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV 145 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i---~g~~ 145 (317)
|++.+|++++|+||||||||||+|+|+|+.. |++|+|.+ +|++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~ 209 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRH 209 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCC
Confidence 5677899999999999999999999999999 99999999 7764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-13 Score=129.16 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=48.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCC-------CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~G-------e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
+++.++++..|+.. .+ ++++++.|++| +.++|+||||||||||+++|+|.+... ..+++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~-~~-----~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQE-NV-----KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCH-HH-----HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSH
T ss_pred HcCCccHHHccCcH-HH-----HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCH
Confidence 35566777777543 33 89999999887 899999999999999999999998200 005566555433
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=103.07 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=35.8
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhh--cccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~G--l~~p~~~~p~~G~I~i~g~~ 145 (317)
-|++|++++|+||||||||||++.|++ +.++.......|.+++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 589999999999999999999999999 45511001156778877653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-11 Score=113.37 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=39.9
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++.++|++++|+|+|||||||+++.|++++. +..|+|.+.+.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D 141 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAAD 141 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccc
Confidence 566778999999999999999999999999999 888889876654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-11 Score=105.62 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
|++++|+||||||||||+++|++ |..|.+.++|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccc
Confidence 67899999999999999999986 346889988754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=9.3e-12 Score=121.25 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=33.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-++++|+++.|+.++|||+||||||||+++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 67899999999999999999999999999999984
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-11 Score=108.12 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=44.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccC------ceeeEecccCCCCcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG------DGTYFLQEYTIPRGV 161 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~------~~~~~~Q~~~l~~~~ 161 (317)
+++-.-..++|++++|+||||||||||+++|+|+++|+ +..|.|.+.+++. .++|+||++.+|+.+
T Consensus 6 ~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~ 77 (219)
T 1s96_A 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 77 (219)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred cccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCcccccCceEEECCHHHHHHH
Confidence 34445578999999999999999999999999999821 2688888877642 367777765554433
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-11 Score=103.15 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=26.7
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+++++|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67889999999999999999999999999963
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=122.46 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=76.7
Q ss_pred hhhHHHHHHhhhccCCCCh---------HHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceec
Q 021147 200 VIFVVDGLAVLKSMEGDSD---------VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG 270 (317)
Q Consensus 200 ~~tv~eni~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~ 270 (317)
.+||.++++|.....-... ....++.+.+..+|+.... .+..+ .+|||||+|||+||++|.
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~--ldR~~--------~tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLT--LSRSA--------GTLSGGEAQRIRLATQIG 520 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSB--SSSBG--------GGCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccc--cCCcc--------ccCCHHHHHHHHHHHHHh
Confidence 4689999998754431110 1122334567778874221 13444 799999999999999999
Q ss_pred ccc--ceeeccCCCC-CCHHHHHHHHHHHHHHHHh------cCCCcchhhcccCCC
Q 021147 271 IPP--AKQIFDIPES-SDPENELIIVDMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 271 ~~p--~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
.+| .++||||||+ ||+.....+.+.|+++.+. .+|++..+. .+|+|
T Consensus 521 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrI 575 (972)
T 2r6f_A 521 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL 575 (972)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEE
T ss_pred hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEE
Confidence 985 8999999999 9999999999999998642 456665554 46664
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-10 Score=103.94 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=23.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHh-hccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~-Gl~~ 128 (317)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999 9984
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=103.80 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=49.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||+++.|++++. +..|+|.+.+.+
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d 135 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAAD 135 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCC
Confidence 5677888888532 2568888 999999999999999999999999999 888999987765
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-10 Score=108.53 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.1
Q ss_pred EecCCCEEEEEcCCCChHHHHHHH--HhhcccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlkl--L~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-|++|++++|+||||||||||++. +.++.+++......+.+++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 689999999999999999999994 45666621111123477877753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-10 Score=93.35 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=29.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+++ +|+.++|+||||||||||+++|++.+.
T Consensus 31 l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 31 LRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6666 899999999999999999999999998
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-11 Score=102.64 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=31.8
Q ss_pred HhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 261 IRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 261 qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
+...+|++++.+|.++++| +| +|..+...+.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 99 9999999998887653
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-11 Score=106.98 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=35.7
Q ss_pred CceEEEeE-EEEcCCCCccccccCceeeeeEecC---CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 70 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 70 ~~I~~~nl-s~~y~~~~~~~~~~~L~~isl~I~~---Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+++|| +|+|.+...+ |+++||+|.+ |++++|+|+|||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~-----l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQI-----LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHH-----HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcchh-----hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999333344 9999999999 99999999999999999999999654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=102.47 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=63.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhh-cccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCChHHHHHHHHH
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRC 182 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G-l~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 182 (317)
..+.|+||||+|||||+++|++ ++. |+.|.+.++|.+ +.... ..+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~----------------------~~~~~--~~~~---- 83 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQ----------------------FVTAS--NRKL---- 83 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC--------------------------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEeccee----------------------ecccc--cccc----
Confidence 3489999999999999999999 788 889999998864 11111 1122
Q ss_pred hhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHh
Q 021147 183 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIR 262 (317)
Q Consensus 183 ~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qR 262 (317)
.+++++|...+... . ........ ..+.+.++.+... . ..... ..||+
T Consensus 84 ---~~~~~~~~~~~~~~-~---------~~~~~~~~---~~~~~~i~~~~~~---~--~~~~~-------~~ls~----- 130 (354)
T 1sxj_E 84 ---ELNVVSSPYHLEIT-P---------SDMGNNDR---IVIQELLKEVAQM---E--QVDFQ-------DSKDG----- 130 (354)
T ss_dssp -----CCEECSSEEEEC-C---------C----CCH---HHHHHHHHHHTTT---T--C---------------------
T ss_pred ---eeeeecccceEEec-H---------hhcCCcch---HHHHHHHHHHHHh---c--ccccc-------ccccc-----
Confidence 28888876532110 0 00000010 1133333332210 0 00000 13455
Q ss_pred hcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 263 TYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
+..+|+++|+|||++||+.+...+.+.+++.
T Consensus 131 ------l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 131 ------LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ---------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ------cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 7789999999999999999999888888774
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-11 Score=121.75 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=43.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcC-cEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~-G~I~i~g~~ 145 (317)
++++++.+.+|+.++|+||||||||||+++|+++++ +.. |.+.+++..
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNP 98 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCc
Confidence 899999999999999999999999999999999998 666 777776653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-09 Score=89.33 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.5
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56778899999999999999999999999997 6665
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.84 E-value=9.7e-11 Score=105.17 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=41.4
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.|+++|++..|+ - +|++.+ ++++|+||||||||||+++|+|++. |++|+|.++|.+
T Consensus 9 ~l~l~~~~~~~~----------~---~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R---TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEE----------E---EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC------
T ss_pred EEEEEeeecccC----------C---EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEE
Confidence 477888765442 1 455566 8999999999999999999999999 999999998864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-09 Score=103.12 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=34.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++|+.+++|++++|+||||||||||+++|+|.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 899999999999999999999999999999998754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-09 Score=93.44 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=44.8
Q ss_pred hcCcHHHHHhhcccceecc----ccceeeccCCCC-CCHHHHHHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGI----PPAKQIFDIPES-SDPENELIIVDMLRYCLE 301 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~----~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~ 301 (317)
..||||||||+++|++++. .|+++|||||++ ||+.+...+.+.|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~ 116 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK 116 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc
Confidence 6899999999999999974 469999999999 999999999999988743
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-09 Score=102.05 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=27.1
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE---Cccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV 145 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i---~g~~ 145 (317)
+++.+|++++|+||||||||||+|+|.|+.. |..|+|.+ +|+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKH 213 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcc
Confidence 6788999999999999999999999999999 99999998 6653
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-09 Score=108.50 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=45.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++.+++|+.++|+||||||||||+++|+|+++ |++|.|.++|..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 788999999999999999999999999999999999 999999998863
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-09 Score=107.57 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=39.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++++++| +.|+||||||||||+++|++... .+.|.+++.+
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~ 99 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSD 99 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhH
Confidence 77889999999 99999999999999999999875 5778888765
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-09 Score=96.60 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=33.6
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHh---hcccCCCCCCcCcEEE
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT 140 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~---Gl~~p~~~~p~~G~I~ 140 (317)
++|++++|+|||||||||++++|+ |+.. +++|.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCcee
Confidence 789999999999999999999999 9998 8999988
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-09 Score=93.83 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.5
Q ss_pred EeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE--EECccc
Q 021147 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSV 145 (317)
Q Consensus 75 ~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I--~i~g~~ 145 (317)
+|+++.++.-.. .+..++..++|++++|+|+||||||||+++|++.+. ..|.+ +++|.+
T Consensus 3 ~~~~~~~~~~~~------~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~ 63 (200)
T 3uie_A 3 TNIKWHECSVEK------VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDN 63 (200)
T ss_dssp -------CCCCH------HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHH
T ss_pred CCCcccccccCH------HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCch
Confidence 466666654332 788899999999999999999999999999999985 35776 888764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-08 Score=85.67 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.5
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++++++.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 7899999999 999999999999999999999987
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-09 Score=108.54 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=85.6
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhh--cccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G--l~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
.+++++.++..+.|+|++||||||+++.|.. ++. ++.|++.+.+.+.+. .-|+.+...|++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK~-~el~~~~~lPhl----------- 221 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPKM-LELSVYEGIPHL----------- 221 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCSS-SGGGGGTTCTTB-----------
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCch-hhhhhhccCCcc-----------
Confidence 4889999999999999999999999998876 555 556777765544221 112222111111
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccch
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 252 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~ 252 (317)
.+.+.+++. .+.+.+... ...++++.+++..+++.... +|.- + ..
T Consensus 222 --------------~~~Vvtd~~------~a~~~L~~~-------~~EmerR~~ll~~~Gv~~i~---~yn~----~-~~ 266 (512)
T 2ius_A 222 --------------LTEVVTDMK------DAANALRWC-------VNEMERRYKLMSALGVRNLA---GYNE----K-IA 266 (512)
T ss_dssp --------------SSSCBCSHH------HHHHHHHHH-------HHHHHHHHHHHHHTTCSSHH---HHHH----H-HH
T ss_pred --------------cceeecCHH------HHHHHHHHH-------HHHHHHHHHHHHHcCCccHH---HHHH----H-HH
Confidence 111111110 001111100 12234455666666652111 1110 0 00
Q ss_pred hcCcHHHHHhh----------cccceeccccc-eeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 253 LSLTDRARIRT----------YLGELLGIPPA-KQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 253 ~~LSgG~~qRl----------~iaral~~~p~-ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
..+|+|++|+. ++++++...|. ++++||+.. ++.. ...+.+.+.++.+.
T Consensus 267 ~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~ 327 (512)
T 2ius_A 267 EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQK 327 (512)
T ss_dssp HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHH
Confidence 25677877653 36788888997 799999999 8743 34566667666554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=87.07 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.5
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-.++.++|++++|+|+||||||||+++|++.+ |.+.+++.+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~ 62 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADA 62 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccc
Confidence 34667899999999999999999999999986 567887764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=9.3e-09 Score=88.61 Aligned_cols=36 Identities=11% Similarity=-0.044 Sum_probs=30.5
Q ss_pred hcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 263 TYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 263 l~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
...|++++.+|.+.++| +| +|+.+...+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688899999999999 88 99999999988877654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-08 Score=86.70 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999999999999997
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=86.80 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.7
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||||++++|++++|+|++||||||+++.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998765
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.6e-08 Score=90.86 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=43.9
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++||++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D 142 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAAD 142 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCC
Confidence 378999999999999999999999999999999999 888999987765
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=88.13 Aligned_cols=39 Identities=15% Similarity=0.458 Sum_probs=33.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSS 144 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~ 144 (317)
.+|++++|+|+|||||||+++.|++.+. +.+| +|.+-+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEec
Confidence 4799999999999999999999999998 7778 5664443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-08 Score=83.75 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|++++|+||||||||||+++|.++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999986
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=86.03 Aligned_cols=131 Identities=10% Similarity=0.043 Sum_probs=79.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEEECcccCceeeEecccCCCCcccccceeeccC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRS 171 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~ 171 (317)
|+++..-+++|+++.|.|++|+|||||+..+++... +..| .|.+.+. +.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~-------------------------E~ 242 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSL-------------------------EM 242 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEES-------------------------SS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEEC-------------------------CC
Confidence 888888899999999999999999999999999887 5445 4554332 23
Q ss_pred ChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccc
Q 021147 172 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD 251 (317)
Q Consensus 172 ~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~ 251 (317)
+...+..++.. ...++.++. +. ..........++..++..+.. .+..+-..
T Consensus 243 s~~~l~~r~~~--~~~~~~~~~-------------l~----~g~l~~~~~~~~~~a~~~l~~--------~~l~i~d~-- 293 (454)
T 2r6a_A 243 SAQQLVMRMLC--AEGNINAQN-------------LR----TGKLTPEDWGKLTMAMGSLSN--------AGIYIDDT-- 293 (454)
T ss_dssp CHHHHHHHHHH--HHHTCCHHH-------------HH----TSCCCHHHHHHHHHHHHHHHS--------SCEEEECC--
T ss_pred CHHHHHHHHHH--HHcCCCHHH-------------Hh----cCCCCHHHHHHHHHHHHHHhc--------CCEEEECC--
Confidence 44444444211 112322221 11 011122333445555555432 12211111
Q ss_pred hhcCcHHHHHhhcccceec--cccceeeccCCCC-CC
Q 021147 252 LLSLTDRARIRTYLGELLG--IPPAKQIFDIPES-SD 285 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral~--~~p~ilIlDEPts-LD 285 (317)
..+|.++.+ +.+|.+. .+|+++|+|+++. .+
T Consensus 294 -~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 294 -PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp -TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred -CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 368888876 5566655 6899999999998 63
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.5e-08 Score=91.50 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=49.0
Q ss_pred CCCEEEEecc---chhcCcHHHHHhh------cccceeccc-cceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 241 DKPVVVVTHG---DLLSLTDRARIRT------YLGELLGIP-PAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 241 ~~~~~i~~hg---~~~~LSgG~~qRl------~iaral~~~-p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
.+.+.+...+ .+..|||||+||+ ++|+++..+ |+++|||||++ ||+.+...+.+.|.++
T Consensus 264 ~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 264 DFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333 (371)
T ss_dssp TCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred ceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence 4555555521 2468999999987 667999999 99999999999 9999999999999885
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-07 Score=82.81 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=37.2
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..++|++++|+|+||||||||+++|.+++. +..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccC
Confidence 467889999999999999999999999998 888888876654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-07 Score=80.34 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.3
Q ss_pred ceee-eeEecCCCEEEEEcCCCChHHHHHH-HHhhccc
Q 021147 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVN-RISKVFE 128 (317)
Q Consensus 93 L~~i-sl~I~~Ge~vaIvG~SGsGKSTLlk-lL~Gl~~ 128 (317)
|+.+ .--+++|++++|+||||||||||+. ++.+..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6666 6679999999999999999999965 4455554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-07 Score=80.25 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+...+|++++|+||||||||||+++|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556899999999999999999999999875
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-07 Score=91.55 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=49.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCce--------------eeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~--------------~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.+.|+||++.|+..... |+ |+++.|.+|+.++|+|++|||||||+++|++...
T Consensus 131 ~~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3468999999999876654 88 8999999999999999999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-07 Score=88.92 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=39.5
Q ss_pred ceeeeeEecCCC------EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 93 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl~I~~Ge------~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
|++++..+.+++ ++||+||||||||||+++|.+++... |+.|.|.+-+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 888888888887 99999999999999999999999732 4566655433
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=83.64 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCC------CCCCcCcEEEECccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNSSV 145 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~------~~~p~~G~I~i~g~~ 145 (317)
+++|+|++|||||||++.|+|...+. ...|+.|.|.++|.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 49999999999999999999986411 112567888888754
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-07 Score=93.19 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=37.8
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc-EEE-ECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G-~I~-i~g~~ 145 (317)
.+++|++++|+|+||||||||+++|++++. |++| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcH
Confidence 688999999999999999999999999999 8886 674 88864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-07 Score=79.34 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999987
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-07 Score=82.40 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=34.5
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecC
Confidence 3446689999999999999999999999998 3668877764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=9e-08 Score=83.95 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcc---cCCCCCCcCcEEEE
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVF---ENDKFASERAQVTY 141 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~---~p~~~~p~~G~I~i 141 (317)
+.+++|+|+|||||||++++|++.+ . ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 5689999999999999999999887 4 66777664
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-06 Score=84.39 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=36.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc------CC-CCCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE------ND-KFASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~------p~-~~~p~~G~I~i~g~ 144 (317)
.+++|..++|||+||||||||+++|+|... |. ...|+.|.|.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 667899999999999999999999999211 00 12389999999873
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-06 Score=79.06 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888876655
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=73.56 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.+|++++|+|+|||||||++++|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCcc
Confidence 568999999999999999999999875 456777654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-06 Score=72.71 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999999999976
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-06 Score=72.79 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc--EEEECcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS 144 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G--~I~i~g~ 144 (317)
++|++++|+|++||||||++++|.+.+. + .| .|.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECCh
Confidence 4689999999999999999999999987 5 45 6666664
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.03 E-value=8.9e-07 Score=83.53 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=48.8
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+++.+.|... .+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.
T Consensus 31 ie~~~~~~~~~~~-~~-----~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~ 92 (341)
T 2p67_A 31 VESRHPRHQALST-QL-----LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAV 92 (341)
T ss_dssp HHCCCHHHHHHHH-HH-----HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred hhcCCchhhhHHH-HH-----HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEee
Confidence 4445555555432 23 889999999999999999999999999999999998 76777766544
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-06 Score=74.66 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=28.5
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
=++++|++++|+|+|||||||++++|.+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788899999999999999999999999874
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-06 Score=75.25 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=38.7
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc--EEEECccc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 145 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G--~I~i~g~~ 145 (317)
.+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChH
Confidence 35678899999999999999999999999998 7788 88888653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-06 Score=69.09 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+++.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666665 89999999999999999998543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=82.88 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=34.2
Q ss_pred hcCcHHHHHhhcccceeccccceeeccCCCC--CCHHHHHHHHHHH
Q 021147 253 LSLTDRARIRTYLGELLGIPPAKQIFDIPES--SDPENELIIVDML 296 (317)
Q Consensus 253 ~~LSgG~~qRl~iaral~~~p~ilIlDEPts--LD~~t~~~l~~~l 296 (317)
.-+|.|+.+|..++++++.+++++|+|||.. +|......+...+
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l 234 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHH
Confidence 4567889999999999999999999999984 7765444443333
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-06 Score=74.08 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred ceeeeeEec---CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE
Q 021147 93 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (317)
Q Consensus 93 L~~isl~I~---~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i 141 (317)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 778888887 899999999999999999999999998 6 555553
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-06 Score=86.05 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=40.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
++++++++ +|+.++|+||||||||||+++|++.+. +..|.|.+.|
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~ 143 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGG 143 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecc
Confidence 78888888 899999999999999999999999998 7778777666
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.6e-06 Score=78.42 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=34.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
+++.+++|+|++|||||||++.|.|.+. +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeec
Confidence 3467899999999999999999999998 788888877654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.85 E-value=9.4e-06 Score=76.76 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=32.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+.--+.+|+++.|.|++|+|||||+.-++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 777766899999999999999999999998887765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.79 E-value=1.7e-05 Score=75.76 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=94.7
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
..++|+||++++++..++.++. ....+....++++.++++.+|+-. +.+.++...|++
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-----------------~~~~~~~~LSGG 167 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------------KHDSYPSNLSGG 167 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-----------------GTTCCTTTSCHH
T ss_pred CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 4689999999999888877743 234455666677777777777521 134567888999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..|.+++++||. .+..+|+.... +.-++.+..+
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v-l~~G~iv~~g 246 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV-ISNGELIEQD 246 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE-EETTEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 3110 2 348899999995 55667766655 7778999999
Q ss_pred cceeeccCCCCCCHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVD 294 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~ 294 (317)
+.-.++..|.+ ++++..+..
T Consensus 247 ~~~ev~~~p~~--~~~~~~~~~ 266 (366)
T 3tui_C 247 TVSEVFSHPKT--PLAQKFIQS 266 (366)
T ss_dssp BHHHHHSSCCS--HHHHHHHHH
T ss_pred CHHHHHhCCCc--HHHHHHHhh
Confidence 99889999988 777766544
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=5.3e-06 Score=71.34 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=38.7
Q ss_pred EEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhc----ccCCCCCCcCcEEEECcc
Q 021147 78 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV----FENDKFASERAQVTYNSS 144 (317)
Q Consensus 78 s~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl----~~p~~~~p~~G~I~i~g~ 144 (317)
++.|++-..+ ++++|+..++.+ ++|+|++|||||||++.+.+- +.| ...++.+.+.++|.
T Consensus 6 ~~~~~~~~~~-----l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~-t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFSSV-----LQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLHPTSEELTIAGM 69 (198)
T ss_dssp -------CHH-----HHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------C-CCCCSCEEEEETTE
T ss_pred HHHHHHHHHH-----HHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCC-CCCceeEEEEECCE
Confidence 4456655444 899999988885 789999999999999999873 221 11245667777663
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.77 E-value=1e-05 Score=78.70 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=47.1
Q ss_pred EEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-.+++++.|+.. -++++|+ ++++++++|+|||||||++..|++.+. +..++|.+.+.+
T Consensus 78 v~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D 135 (425)
T 2ffh_A 78 VYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECC
T ss_pred HHHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecc
Confidence 344677777543 2457777 899999999999999999999999999 888899987654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=68.65 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.8
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 48899999999999999999999999999876
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.7e-05 Score=74.05 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE-EECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I-~i~g~ 144 (317)
-+++|+++.|.||+|||||||+..+++... +..|.+ ++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 488999999999999999999999999988 666765 55543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.4e-05 Score=68.02 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=33.6
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE-EECc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 143 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I-~i~g 143 (317)
+...+|.+++|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 4456889999999999999999999999988 666665 4444
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.4e-05 Score=69.28 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.5
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999988764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=8.6e-06 Score=83.54 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=33.5
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
|+++++|..++|+|++|||||||++.|.+...+. +..|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCc
Confidence 4678899999999999999999999999887621 366777 4443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-05 Score=76.06 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh--ccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G--l~~ 128 (317)
|++++++++ .++|||++|||||||++.|.| +++
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 999999999 899999999999999999999 555
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.70 E-value=8.2e-06 Score=75.67 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=47.1
Q ss_pred EEEeEEEEcCCCCccccccCcee-eeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 73 DAKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 73 ~~~nls~~y~~~~~~~~~~~L~~-isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
-.+++...|++. .++ ++|+.+ |++++++|++||||||++..|++.+. +..++|.+.+.+
T Consensus 76 ~~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D 135 (297)
T 1j8m_F 76 VYDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred HHHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecC
Confidence 345566667543 345 788876 99999999999999999999999998 778888876654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.4e-05 Score=66.59 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=27.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCC---CCCCcCcEEEECc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND---KFASERAQVTYNS 143 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~---~~~p~~G~I~i~g 143 (317)
++++|+..++. .++|+|++|||||||++.+.+-.... ...++.+.+.++|
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 88999998887 57899999999999999998732100 1113456666665
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=68.09 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
+++|+|+|||||||++++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.8e-05 Score=67.84 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=26.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 44556666664 89999999999999999886544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00018 Score=70.08 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+++++|++||||||++..|++.+. +..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEec
Confidence 578999999999999999999999998 77788876543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.56 E-value=3.3e-05 Score=66.41 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=6.6e-06 Score=78.25 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.+.++|++..|.... + +++++|+| +|+|+||+|||||++.|.+...
T Consensus 15 ~~~v~~~~l~~~~~~k~-~-----~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKS-V-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ------CCHHHHHHTHH-H-----HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred CceEEeccchHHhCCee-e-----cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 35688999998886443 3 88899887 9999999999999999988754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.2e-05 Score=73.63 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=86.7
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+||++++.++.. ...+....++++.++++.+|+-. +.+.++.+.|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------------~~~r~~~~LSGG 142 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------------LAGRYPHELSGG 142 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------------GTTSCGGGSCHH
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 56899999999999988887542 22344555666777777776521 134556778999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... ...+.+++++||. ++..+|+.... |.-++.+..+
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v-l~~G~i~~~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV-MKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE-EECCEEEEEe
Confidence 9999999999877 3110 2358899999995 56677776655 6778888888
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++..++..|.+
T Consensus 222 ~~~el~~~p~~ 232 (359)
T 3fvq_A 222 SPHELYRQPAD 232 (359)
T ss_dssp CHHHHHHSCSC
T ss_pred CHHHHHhCccc
Confidence 88888888876
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.51 E-value=1.5e-05 Score=76.46 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=90.6
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.|||++++.++. ....+....++++.++++.+++-. +.+.++.+.|++
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~p~~LSGG 137 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------------LLDRKPKALSGG 137 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------------GTTCCGGGSCHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------------hhcCChhHCCHH
Confidence 5689999999999998888754 234556666777777777777521 124556778999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..|.+++++||. ++..+|+.... |.-|+.+..+
T Consensus 138 qrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v-l~~G~i~~~g 216 (381)
T 3rlf_A 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV-LDAGRVAQVG 216 (381)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE-EECCEEEEEe
Confidence 9999999998765 2110 2 238899999995 56677777665 7778888888
Q ss_pred cceeeccCCCCCCHHHHH
Q 021147 273 PAKQIFDIPESSDPENEL 290 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~ 290 (317)
++..+++.|.+ +....
T Consensus 217 ~~~~l~~~p~~--~~v~~ 232 (381)
T 3rlf_A 217 KPLELYHYPAD--RFVAG 232 (381)
T ss_dssp CHHHHHHCCSB--HHHHH
T ss_pred CHHHHHhCCcc--HHHHH
Confidence 88888888887 54443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00025 Score=66.30 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999999987
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.49 E-value=4.6e-05 Score=65.56 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.9e-05 Score=75.14 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=33.6
Q ss_pred ceeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++.+++|++ ++|+|++||||||++++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 7889999999999 99999999999999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.48 E-value=4.7e-05 Score=63.78 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++|..++|+|++|||||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999864
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.45 E-value=8.1e-05 Score=63.62 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=29.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.+++|+|+||||||||++.|.+.+.+.. -.-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCC
Confidence 5899999999999999999999876110 12356666554
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.43 E-value=4.7e-05 Score=68.36 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=32.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
..+++.++.|+|++||||||+++.|...+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHH
Confidence 445667899999999999999999999875 2456777753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=9.7e-05 Score=71.76 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=30.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccC----C---CCCCcCcEEEECccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEN----D---KFASERAQVTYNSSV 145 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p----~---~~~p~~G~I~i~g~~ 145 (317)
.++|+|+||||||||++.|.|.... . ...+.+|.+.++|+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999998520 0 012567889988864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=7.5e-05 Score=72.00 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=34.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc-----C-CCCCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE-----N-DKFASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~-----p-~~~~p~~G~I~i~g~ 144 (317)
.+..|..++|||+||+|||||++.|+|.-. | ....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 567788999999999999999999999821 0 012277888888764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=6.9e-05 Score=63.20 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999998544
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=8.4e-05 Score=61.52 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.2e-05 Score=68.87 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=31.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+.--+++|+++.|.|++|+|||||+.-++.-..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 777776799999999999999999999987775543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=61.46 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=61.62 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.35 E-value=7e-05 Score=66.85 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=29.8
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
++++++.+++| +.|+||+|||||||+++|++.+. .. -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~-----~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK-----VP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT-----CC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC-----CC--EEEEeHHH
Confidence 34444555555 88999999999999999999876 21 36666653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.34 E-value=3.1e-05 Score=72.29 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=34.2
Q ss_pred ceeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.++..|+.|++ +.|.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 8889999999998 99999999999999999999987
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.31 E-value=6.9e-05 Score=69.26 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.+++|+|++|||||||++.|.|.-
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4489999999999999999999974
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=64.85 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.5
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+-++|.+++|+|++||||||++++|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999999743
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999999753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=60.57 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=6.5e-05 Score=64.75 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0001 Score=66.03 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-+++|+|||||||||+++.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999554
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=60.76 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|.|++||||||+++.|.-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=59.50 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 021147 105 SLLLIGPKGSGKSSLVNRI 123 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL 123 (317)
+++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=61.11 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++.++.|+|++||||||+++.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4577899999999999999999987543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=61.12 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999999654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00014 Score=61.18 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..+..+.|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998554
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=62.07 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhh
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
.+-+++|+|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=67.61 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.6
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
+++.++++.+| +.+|+|+|||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 66677887775 899999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=65.51 Aligned_cols=41 Identities=20% Similarity=0.461 Sum_probs=33.0
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.+.++..+.|.||+|||||||+++|++... .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-------~~~i~v~~~ 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKGP 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-------CEEEEECHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-------CCEEEEEhH
Confidence 34567788999999999999999999999865 455666654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0002 Score=60.09 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00029 Score=60.08 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+|.+++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999765
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=60.31 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.+++|+|++||||||+.++|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999875
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=59.59 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00022 Score=67.62 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=81.3
Q ss_pred cCceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~~~~~~LSG 143 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------------VLNHFPRELSG 143 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCH
Confidence 356899999999999888877532 12344455566666677666411 12345567899
Q ss_pred HHHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..
T Consensus 144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v-l~~G~i~~~ 222 (353)
T 1oxx_K 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV-LVKGKLVQV 222 (353)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE-EETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEE
Confidence 99999999999877 2110 2 237899999995 45566665544 556777777
Q ss_pred ccceeeccCCCC
Q 021147 272 PPAKQIFDIPES 283 (317)
Q Consensus 272 ~p~ilIlDEPts 283 (317)
+++-.+++.|.+
T Consensus 223 g~~~~l~~~p~~ 234 (353)
T 1oxx_K 223 GKPEDLYDNPVS 234 (353)
T ss_dssp ECHHHHHHSCSS
T ss_pred cCHHHHHhCccc
Confidence 777777777766
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00027 Score=63.54 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+||||||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999988654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00016 Score=68.90 Aligned_cols=120 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSGG 137 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-----------------LLNRYPWQLSGG 137 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-----------------CTTCCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------HhhCChhhCCHH
Confidence 56899999999999888877531 23344455556666666666521 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 216 (362)
T 2it1_A 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV-IREGEILQVG 216 (362)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 2110 2 237899999995 45566665544 5567777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++.-++.+|.+
T Consensus 217 ~~~~~~~~p~~ 227 (362)
T 2it1_A 217 TPDEVYYKPKY 227 (362)
T ss_dssp CHHHHHHSCSB
T ss_pred CHHHHHhCccc
Confidence 77777777766
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00027 Score=61.04 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.|+||||||||||++.|..-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999887654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00031 Score=58.50 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
.++.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=60.14 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|.+++|+|++||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987653
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00034 Score=66.58 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
.+..++|+|+||||||||++.|.+.+. +..+.|.+-+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 567899999999999999999999887 66777776543
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00034 Score=64.23 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g 143 (317)
.+..+.|+|||||||||+++.|..-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 356799999999999999999987553 24456654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00015 Score=69.41 Aligned_cols=120 Identities=16% Similarity=0.256 Sum_probs=80.1
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSGG 143 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------------LLNRKPRELSGG 143 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------------GTTCCGGGSCHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------------HhcCCcccCCHH
Confidence 57899999999999888877531 23344445555666666665411 123455678899
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 144 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 222 (372)
T 1g29_1 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV-MNRGVLQQVG 222 (372)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE-EeCCEEEEeC
Confidence 9999999998766 2110 2 237899999995 55566665544 5567777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++--+++.|.+
T Consensus 223 ~~~~l~~~p~~ 233 (372)
T 1g29_1 223 SPDEVYDKPAN 233 (372)
T ss_dssp CHHHHHHSCSB
T ss_pred CHHHHHhCccc
Confidence 77777777766
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998776
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=59.82 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.0
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|.+++|+|++||||||+++.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00042 Score=61.09 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999766
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00021 Score=67.89 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=80.5
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------------~~~r~~~~LSGG 149 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------------YANRFPHELSGG 149 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------HhcCCcccCCHH
Confidence 56899999999999888877531 23344455556666666666411 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 228 (355)
T 1z47_A 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV-LHEGNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 2110 2 237899999995 45566665444 5556777666
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++--++++|.+
T Consensus 229 ~~~~l~~~p~~ 239 (355)
T 1z47_A 229 TPEEVYEKPGT 239 (355)
T ss_dssp CHHHHHHSCSS
T ss_pred CHHHHHhCccc
Confidence 76667777766
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00097 Score=56.24 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=26.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc----EEEECcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSS 144 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G----~I~i~g~ 144 (317)
.++|+|++|||||||++.+.+-.-+....|+.+ .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 488999999999999965544321111236666 5666654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00037 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00017 Score=61.31 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=25.9
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+.+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455678999999999999999999987654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0004 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00043 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00015 Score=68.92 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=79.2
Q ss_pred CceeeEecccCCCCcccccceeec-----cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIR-----RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++... ..+....++++.++++.+++-. +.+.++...|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSgG 137 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-----------------LLDRKPTQLSGG 137 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-----------------GTTSCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 568999999999998888775321 1222333345555666665411 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v-l~~G~i~~~g 216 (359)
T 2yyz_A 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV-FNQGKLVQYG 216 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE-EECCEEEEeC
Confidence 9999999999877 2110 2 237899999995 45566665544 5667777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++..++++|.+
T Consensus 217 ~~~~l~~~p~~ 227 (359)
T 2yyz_A 217 TPDEVYDSPKN 227 (359)
T ss_dssp CHHHHHHSCSB
T ss_pred CHHHHHhCccc
Confidence 77777777776
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00089 Score=62.52 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=29.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
++...+.+ .|.-++|+|+||+|||||+..|.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 77777888 789999999999999999999887
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00037 Score=58.36 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999986654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00019 Score=68.58 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=74.9
Q ss_pred CceeeEecccCCCCcccccceee-----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI-----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++.. ...+....++++.++++.+++-. +.+.++...|++
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------------~~~r~~~~LSGG 145 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------------LLNRYPAQLSGG 145 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCTTTCCSS
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 46899999999999888877532 22344455556666666666411 124566778899
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 146 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v-l~~G~i~~~g 224 (372)
T 1v43_A 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV-MNRGQLLQIG 224 (372)
T ss_dssp CHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEeC
Confidence 9999999998877 2110 1 237899999995 45566665544 5567777767
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++.-++..|.+
T Consensus 225 ~~~~l~~~p~~ 235 (372)
T 1v43_A 225 SPTEVYLRPNS 235 (372)
T ss_dssp CHHHHHHCCSB
T ss_pred CHHHHHhCccc
Confidence 77677777766
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00057 Score=58.17 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|+||||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999998876
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0036 Score=60.76 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=31.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+.--+++|+++.|.|++|+|||||+.-++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 666665699999999999999999999988887665
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00063 Score=61.90 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEE
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I 139 (317)
..+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5799999999999999999999987 555543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00071 Score=58.83 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00093 Score=63.60 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc------CCCCCCcCcEEEECcc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 144 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~------p~~~~p~~G~I~i~g~ 144 (317)
|-.++|||.+|+|||||++.|.+--. .....|..|.+.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 34689999999999999999998321 1123477888888763
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=56.03 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00037 Score=68.72 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 55667777777 88999999999999999999764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00063 Score=61.40 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999854
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00071 Score=59.20 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.+++|+|++||||||+++.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999986543
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00065 Score=57.15 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00066 Score=56.25 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|++||||||+.+.|...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987654
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00073 Score=58.34 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987543
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00092 Score=57.20 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+-+++|+|++||||||+.+.|+..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00097 Score=55.91 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00081 Score=56.58 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988663
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00074 Score=58.82 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999987654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00087 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00064 Score=59.95 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.6
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.+..|+.++++||+||||||++.++..-
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4567999999999999999998876543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999988753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00089 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00085 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+|++||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00096 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998753
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00094 Score=57.08 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+|++||||||+.+.|+..+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999986543
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++++|++|||||||++.+.+-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999887643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0017 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0018 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00096 Score=59.51 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999987543
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0017 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998664
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0022 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999887643
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=57.36 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-+++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999887754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0024 Score=51.87 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998876
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00099 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0027 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999887654
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00059 Score=62.76 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999876
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.-.++|+|++|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998743
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=59.30 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++.++.|+|++||||||+++.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0017 Score=53.42 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=61.23 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999886
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999986543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=58.49 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++-+++|.|++||||||+.+.|+--+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999986543
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=53.73 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=59.92 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=59.19 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++..+.|.||+|||||||++++++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0021 Score=60.37 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0022 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=53.96 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0023 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|+.|||||||++.+.+-..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999988743
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988763
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|+|++|||||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0025 Score=59.20 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-+++|+++.|.|++|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0028 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=59.84 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
-+++|+|++||||||+++.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=52.65 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.+.|-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998765
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0041 Score=52.80 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.001 Score=62.89 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=76.4
Q ss_pred CceeeEecccCCCCcccccceeec-----cCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVIR-----RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.++|+||++.+|+++++.++..- ..+.. +++.++++.+++-. +.+.++...|++
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~-----------------~~~~~~~~LSgG 131 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEH-----------------LLDRNPLTLSGG 131 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTT-----------------TTTSCGGGSCHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCch-----------------HhcCChhhCCHH
Confidence 468999999999998888775311 11111 33444555555311 123455678999
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C--CCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F--RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l--~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... + ..+.+++++||. ++..+++.... +.-++.+..+
T Consensus 132 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v-l~~G~i~~~g 210 (348)
T 3d31_A 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV-VMDGKLIQVG 210 (348)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE-ESSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEC
Confidence 9999999999877 2110 2 247899999995 45566665544 5667777777
Q ss_pred cceeeccCCCC
Q 021147 273 PAKQIFDIPES 283 (317)
Q Consensus 273 p~ilIlDEPts 283 (317)
++-.++++|.+
T Consensus 211 ~~~~~~~~p~~ 221 (348)
T 3d31_A 211 KPEEIFEKPVE 221 (348)
T ss_dssp CHHHHHSSCCT
T ss_pred CHHHHHhCccc
Confidence 77777777766
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0035 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0031 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=56.72 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++||||||+++.|+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999986543
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=56.33 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|-.++|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999987654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0026 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999988764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0021 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48899999999999999988653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0034 Score=52.42 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=23.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-..+....|+.|
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~ 41 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc
Confidence 478999999999999999987543222235544
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=58.91 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=52.18 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988754
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998865
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0041 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0013 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhh
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
.-.++|+|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0019 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987543
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|.+|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999986
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=52.70 Aligned_cols=24 Identities=50% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987643
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0038 Score=52.23 Aligned_cols=24 Identities=46% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=57.92 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=63.76 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.5
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+ +.+-+|+..+|+|+||+|||||++.|..-..
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4444 6788999999999999999999999988765
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0034 Score=52.20 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.-.++|+|++|||||||++.+.+-. .....|+.|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~ 51 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG 51 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc
Confidence 3468999999999999999998754 232335555
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0022 Score=58.26 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.004 Score=52.22 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0031 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|||||||++.+.+-..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999887543
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=60.50 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0043 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999998843
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0026 Score=57.18 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.0
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34556799999999999999999998865
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0014 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|+|++|||||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=59.02 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 35688999999999999999999875
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0028 Score=55.71 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0037 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+++|+|.+|||||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0021 Score=61.23 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|||++|||||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0025 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998865
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0038 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0042 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0049 Score=51.78 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=24.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-..+....|+.|
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~ 57 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCccCCeee
Confidence 489999999999999999987643222234444
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0045 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0024 Score=60.09 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..-.++|+|++|+|||||++.|+|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999875
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=59.95 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998765
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0024 Score=56.82 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.|.|--
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0045 Score=52.47 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-.......|+.|
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~ 58 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE 58 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCCCCccc
Confidence 589999999999999999988654222224444
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=61.23 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.8
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.-.+..++.|+|++||||||+++.|+.-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334557899999999999999999987654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++|+|++|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999998887643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=55.59 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|.+++|.|++||||||+++.|.-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988776
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0043 Score=51.73 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999987643
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=56.81 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.7
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+|.+++|.|++||||||+++.|.-.+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999988775
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=52.37 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998875
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0035 Score=54.87 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=27.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++..-+.+ .|..++|+||||||||||+..|+...
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 55555555 57889999999999999999887643
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0031 Score=53.54 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..-+.|.||+|+|||||++.++..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999998765
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0028 Score=57.45 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0052 Score=52.77 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|+|||||++.+.+-..+....|+.|
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~ 62 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 62 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc
Confidence 489999999999999999988643222235544
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0038 Score=51.45 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999988653
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0048 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0031 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0033 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0031 Score=52.93 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=23.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCC-CCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEND-KFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~-~~~p~~G 137 (317)
.++|+|++|||||||++.+.+-.... ...|+.|
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 58999999999999999998754322 2235555
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0027 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.006 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999988753
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0019 Score=58.51 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=74.1
Q ss_pred ceeeEecccCCCCcccccceee------ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHh-hhccCCCChH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVI------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV-LKSMEGDSDV 219 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~------~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~-~~~~~~~~~~ 219 (317)
.++|+||++.+++.+++.++.. ...+....++++.++++.+|+-. + .+..+...|+
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------------~~~~~~~~~LSg 156 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-----------------RAQGKYPVHLSG 156 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-----------------HHHTSCGGGSCH
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------------hhhcCCcccCCH
Confidence 5789999988888777666321 12233334455556666665411 1 2334556788
Q ss_pred HHHHHHHHHHHcCC-Cccc------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 220 EKQYNQIVATTFNC-PYLS------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
+++|+.++|+++.. |... ...+.+++++||. .+..+++.... +.-++.+..+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g 235 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF-LHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEeC
Confidence 99999998888766 2110 2347899999995 33445544332 4456666666
Q ss_pred cceeeccCCCCCCHHHHH
Q 021147 273 PAKQIFDIPESSDPENEL 290 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~ 290 (317)
+.-.++++|.. +..+.
T Consensus 236 ~~~~~~~~~~~--~~~~~ 251 (262)
T 1b0u_A 236 DPEQVFGNPQS--PRLQQ 251 (262)
T ss_dssp CHHHHHHSCCS--HHHHH
T ss_pred CHHHHHhCcch--HHHHH
Confidence 65556666665 44443
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0026 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0025 Score=54.43 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=27.3
Q ss_pred ceeeeeEecCCC---EEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTT---SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge---~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+.-.+..|. .+.|.||+|+|||||++.++..+.
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333433444444 789999999999999999988775
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0032 Score=56.28 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=25.1
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999988876
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0011 Score=59.28 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||+|+|||||+++|+....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67999999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=58.86 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0034 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl 126 (317)
-.++|+|++|||||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998853
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.007 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999998877643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0034 Score=58.64 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+++|+||||||||||...|+--+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0037 Score=53.07 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0031 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0032 Score=55.61 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=26.7
Q ss_pred eeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 96 isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+-++++..++.|+||.||||||..+.|+--|.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 344566778899999999999999999987765
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.003 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0038 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|||||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0041 Score=54.60 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|.+++|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998876
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=52.40 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=55.03 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|.|..||||||+++.|...+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0042 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0059 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0043 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0046 Score=54.46 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|.+++|-|++||||||+++.|.-.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999887
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0048 Score=50.14 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.-+.|.||+|+|||++++.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456688999999999999999998764
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|.+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988776
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0042 Score=55.90 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|+|||||++.+.+-.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999888653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0043 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0044 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0044 Score=55.56 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|+|||||++.|.|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0069 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988653
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0061 Score=52.21 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=24.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
++..-+. -.|.-+.|.|+||+|||||+..|..
T Consensus 7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333 4578899999999999999987754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0032 Score=56.37 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++.+++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678999999999999999999988764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0022 Score=62.32 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=26.0
Q ss_pred eEecCC--CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~G--e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+.++ .+++|+|++||||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5899999999999999999999876
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.003 Score=52.33 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999887653
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0041 Score=56.13 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|||||||++.+..-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999998887654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0049 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++++|.+|+|||||++.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0042 Score=60.45 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|||.+|||||||++.|.|--
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0046 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=19.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
-.++|+|++|||||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999865
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0065 Score=57.52 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=28.6
Q ss_pred ceeeeeE---ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYD---VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~---I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|+.+ |. +++|+++.|.|++|||||||+..++.-..
T Consensus 51 LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 51 LDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5554 33 88999999999999999999987776543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0024 Score=58.89 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=28.7
Q ss_pred ceeeeeEecCC--CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~G--e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+.-.+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55555556666 4489999999999999999998864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0053 Score=56.66 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
-+++|+++.|.|++|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987775
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0071 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=22.3
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHH
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRI 123 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL 123 (317)
=+++|+++.|.|++|+|||||+--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3899999999999999999998643
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999987654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0028 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0099 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999888754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0063 Score=53.01 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|||.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0064 Score=55.13 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999988875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0085 Score=51.02 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999888643
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0054 Score=55.59 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=68.6
Q ss_pred ceeeEecccCCCCcccccceee------ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVI------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~------~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
.++|+||++.+++.+++.++.. ...+....++++.++++.+++-. +.+..+...|++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------------~~~~~~~~LSgG 163 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-----------------KAHAYPDSLSGG 163 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------------HhcCChhhCCHH
Confidence 5799999988887766665421 12233333445555666665411 112344567889
Q ss_pred HHHHHHHHHHcCC-Cccc-----------------------C-CCCCCEEEEecc--chhcCcHHHHHhhcccceecccc
Q 021147 221 KQYNQIVATTFNC-PYLS-----------------------F-RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPP 273 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-----------------------l-~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~p 273 (317)
++|+.++|+++.. |... + ..+.+++++||. .+..+++.... +.-++.+..++
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~ 242 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLF-MDGGYIIEEGK 242 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE-EETTEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE-EECCEEEEECC
Confidence 9999999888876 2110 2 347889999995 33344443322 34455555555
Q ss_pred ceeeccCCCC
Q 021147 274 AKQIFDIPES 283 (317)
Q Consensus 274 ~ilIlDEPts 283 (317)
.-.++.+|..
T Consensus 243 ~~~~~~~~~~ 252 (263)
T 2olj_A 243 PEDLFDRPQH 252 (263)
T ss_dssp HHHHHHSCCS
T ss_pred HHHHHhCccc
Confidence 4445555544
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0066 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999887653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0044 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
=.++++|++|||||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0066 Score=52.45 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999988754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.013 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999887653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0058 Score=59.28 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999874
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0031 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988876
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0074 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.|+||.||||+|..+.|+--|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998765
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0073 Score=56.59 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+||||++++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999998864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0092 Score=58.19 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998887
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.008 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999988653
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0075 Score=58.14 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+||||||||||.+.|+--+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0092 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+..-+.|.||+|||||||++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44678899999999999999999876
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.013 Score=54.54 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=25.1
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999886
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0076 Score=55.87 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+..+.|.||+|+|||||++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556799999999999999999998774
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.014 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCChHHHHH-HHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLV-NRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLl-klL~Gl~~ 128 (317)
+|.++.+.|+.||||||++ +++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999997 66655543
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0098 Score=53.58 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998875
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0091 Score=59.26 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|-++.|+|.|||||||+.++|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999986
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=54.11 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..-+.|.||+|+|||+|++.++....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345688999999999999999998764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0095 Score=53.29 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.++....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578999999999999999998754
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||+|++.|+.-+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577889999999999999998765
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0083 Score=58.46 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=28.1
Q ss_pred eeeeeEecCCCE--EEEEcCCCChHHHHHHHHhhccc
Q 021147 94 TLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 94 ~~isl~I~~Ge~--vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+.-.|..|.. +.|.||+|+|||||+++|+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555556654 89999999999999999999876
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=53.77 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++++|.+|+|||||++.|.|-..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 4689999999999999999998753
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++..++++|.+|+|||||++.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999997
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|=|.-||||||++++|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.014 Score=54.75 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+...+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0068 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+.-+.|.||+|+|||++++.|....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34568899999999999999998754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0091 Score=51.35 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHH-Hhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNR-ISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlkl-L~Gl~ 127 (317)
.++|+|++|||||||++. +.|-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999998 65654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.014 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.+||+|+.||||||+.+.|+--+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999977654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=57.09 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|||++|+|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.015 Score=54.64 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.4
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
..+.++++---.++|+|.++||||||++.|++--
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 4456666655569999999999999999998763
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.0047 Score=52.41 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|||||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999887753
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=58.86 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.|-++.|+|.+||||||+++.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998764
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=54.83 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+|||||++.|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998774
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.01 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|..|||||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=55.57 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++..++++|.+|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57789999999999999999999974
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=56.00 Aligned_cols=71 Identities=7% Similarity=-0.010 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHcCC-Ccc-----------------------cCCCCCCEEEEecc-chhcCcHHHHHhhcccceecc
Q 021147 217 SDVEKQYNQIVATTFNC-PYL-----------------------SFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 217 ~~~~~~~~~~~a~~~~l-~~~-----------------------~l~~~~~~~i~~hg-~~~~LSgG~~qRl~iaral~~ 271 (317)
.|++++|++++|+++.. |.. .+..+.++++++|. .+..+|+.... |.-++.+..
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~v-l~~G~i~~~ 234 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLV-IEENKVRQY 234 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEE-EETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEE-EECCEEEEE
Confidence 79999999999998876 211 03457889999995 44455665554 667888888
Q ss_pred ccceeeccCCCCCCHHHHH
Q 021147 272 PPAKQIFDIPESSDPENEL 290 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~ 290 (317)
+++..+++.|.+ .....
T Consensus 235 g~~~el~~~p~~--~~va~ 251 (390)
T 3gd7_A 235 DSILELYHYPAD--RFVAG 251 (390)
T ss_dssp SSHHHHHHCCSB--HHHHH
T ss_pred CCHHHHHhCCCc--hHHHh
Confidence 888888888887 44433
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=59.19 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+|.++.|+|.+||||||+++.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.018 Score=53.18 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999988654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 317 | ||||
| d1e2ka_ | 329 | c.37.1.1 (A:) Thymidine kinase {Herpes simplex vir | 0.001 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 0.002 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 0.004 |
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 3/139 (2%)
Query: 105 SLLLI---GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGV 161
+LL + GP G GK++ + + D +TY +G YT +
Sbjct: 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRL 62
Query: 162 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 221
GE+ + ++ + + + ++ D
Sbjct: 63 DQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIA 122
Query: 222 QYNQIVATTFNCPYLSFRD 240
A + ++ +
Sbjct: 123 ALLCYPAARYLMGSMTPQA 141
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 36.6 bits (84), Expect = 0.002
Identities = 31/213 (14%), Positives = 79/213 (37%), Gaps = 29/213 (13%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS--------KVFENDKFASERAQVTYNSSVGDG 148
+ ++ ++GP G+GK++ + I+ +++ +D+ + ++
Sbjct: 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84
Query: 149 TYFLQEYTIPRGVRHGE-----LVIRRSDSSSLRNRMR------CKAHKIGCEPSVI--- 194
Q + + + E L + +R R+ H + P +
Sbjct: 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144
Query: 195 --RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--G 250
++V +V ++L E S+++ + + R ++VV+H
Sbjct: 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA--RALVKEVQSRLGVTLLVVSHDPA 202
Query: 251 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 283
D+ ++ DR G+L+ + + ++D P S
Sbjct: 203 DIFAIADRV-GVLVKGKLVQVGKPEDLYDNPVS 234
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 35.3 bits (80), Expect = 0.004
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGE 165
++++G G GKS+L + F D+F + Y + D
Sbjct: 7 VIMVGSGGVGKSALTLQ----FMYDEFVED-----YEPTKADSYRKKVVLDGEEVQIDIL 57
Query: 166 LVIRRSDSSSLRNRMRCKAHKIGC 189
+ D +++R+ C
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLC 81
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.33 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.12 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.67 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.53 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.37 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.33 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 98.33 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.3 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.3 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.25 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.83 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.79 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.79 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.79 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.72 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.71 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.71 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.65 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.56 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.55 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.49 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.48 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.47 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.46 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.45 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.43 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.4 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.37 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.34 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.21 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.2 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.16 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.16 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.13 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.1 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.09 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.08 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.06 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.06 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.06 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.06 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.06 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.01 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.01 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.01 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.0 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.98 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.98 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.97 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.94 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.93 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.92 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.92 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.92 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.91 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.89 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.86 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.84 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.81 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.79 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.78 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.77 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.73 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.73 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.71 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.7 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.63 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.63 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.62 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.61 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.6 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.59 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.57 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.56 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.55 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.51 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.48 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.46 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.46 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.46 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.45 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.43 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.41 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.41 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.41 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.4 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.38 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.31 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.27 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.27 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.26 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.26 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.26 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.25 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.25 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.25 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.25 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.24 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.24 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.2 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.18 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.17 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.16 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.13 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.13 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.12 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.12 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.11 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.08 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.07 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.06 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.05 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.04 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.02 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.99 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.98 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.95 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.89 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.85 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.84 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.83 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.82 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.82 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.82 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.81 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.79 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.78 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.75 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.74 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.7 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.7 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.68 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.65 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.65 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.65 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.61 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.6 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.59 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.58 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.58 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.53 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.47 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.44 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.42 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.39 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.36 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.34 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.33 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.33 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.32 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.32 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.29 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.23 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.22 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.15 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 95.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.1 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.09 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.05 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.99 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.95 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.85 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.72 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.68 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.59 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.58 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.44 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.42 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.32 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.22 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.2 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.05 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.97 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.9 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.89 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.72 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.69 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.68 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.3 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.2 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.08 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.06 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.97 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.91 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.9 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.62 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 92.41 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.4 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 92.04 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.99 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.58 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.45 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.3 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.07 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.97 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.16 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 89.8 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.74 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.01 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 88.95 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 88.93 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 88.9 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.88 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.77 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.75 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.67 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 88.27 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 88.23 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 88.23 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.13 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.99 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.95 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 87.78 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.71 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.54 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 87.47 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 87.41 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 87.26 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.06 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 87.01 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.93 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.81 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 86.62 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 86.41 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.03 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.85 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.74 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.87 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 82.83 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 81.11 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.8e-48 Score=347.86 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=169.9
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+|+||+|+|++....+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|+++|++
T Consensus 2 I~~~nvsf~Y~~~~~~v----L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~------ 66 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVI----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHD------ 66 (241)
T ss_dssp EEEEEEEEESSTTSCEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE------
T ss_pred eEEEEEEEEeCCCCcce----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEE------
Confidence 79999999996544322 999999999999999999999999999999999999 999999999998
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+..++...+|++ |+||||++.+|+. ||++|+.++.+... .+++..+++.+
T Consensus 67 ----------------i~~~~~~~lr~~-------i~~v~Q~~~lf~~--Ti~eNi~~~~~~~~-----~~~~~~~~~~~ 116 (241)
T d2pmka1 67 ----------------LALADPNWLRRQ-------VGVVLQDNVLLNR--SIIDNISLANPGMS-----VEKVIYAAKLA 116 (241)
T ss_dssp ----------------TTTSCHHHHHHH-------EEEECSSCCCTTS--BHHHHHCTTSTTCC-----HHHHHHHHHHH
T ss_pred ----------------ecccchhhhhce-------EEEEecccccCCc--cccccccccCcccc-----HHHHHHHHHHH
Confidence 778888889888 9999999988764 99999988654322 23466777777
Q ss_pred CCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----c
Q 021147 232 NCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-----A 303 (317)
Q Consensus 232 ~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-----~ 303 (317)
++. ...++.++.+.+++.| ..||||||||++|||||+++|+++||||||+ ||+.++..+.+.|+++.+. .
T Consensus 117 ~~~~~i~~~~~~~~t~i~~~g--~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~i 194 (241)
T d2pmka1 117 GAHDFISELREGYNTIVGEQG--AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 194 (241)
T ss_dssp TCHHHHTTSTTGGGSBCSTTT--TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHhhhcchhhhcCCCC--CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 773 3446778888888888 8999999999999999999999999999999 9999999999999998643 5
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|+++.+. .+|||
T Consensus 195 tH~l~~~~-~~D~i 207 (241)
T d2pmka1 195 AHRLSTVK-NADRI 207 (241)
T ss_dssp CSSGGGGT-TSSEE
T ss_pred ECCHHHHH-hCCEE
Confidence 67787775 47875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.2e-47 Score=348.18 Aligned_cols=201 Identities=19% Similarity=0.222 Sum_probs=174.8
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.|+++||+|+|++....+ |+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~v----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~--- 81 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPI----LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHN--- 81 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCS----EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEE---
T ss_pred CCEEEEEEEEEEeCCCCCcc----eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEE---
Confidence 35699999999997654322 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
++.++...+|++ |+||+|++.+|+. ||++|+.++.+... .+++.+++
T Consensus 82 -------------------i~~~~~~~lr~~-------i~~v~Q~~~lf~~--Ti~eNi~~g~~~~~-----~~~~~~al 128 (255)
T d2hyda1 82 -------------------IKDFLTGSLRNQ-------IGLVQQDNILFSD--TVKENILLGRPTAT-----DEEVVEAA 128 (255)
T ss_dssp -------------------GGGSCHHHHHHT-------EEEECSSCCCCSS--BHHHHHGGGCSSCC-----HHHHHHHH
T ss_pred -------------------cccCCHHHhhhe-------eeeeeccccCCCC--CHHHHHhccCcCCC-----HHHHHHHH
Confidence 778888888887 9999999988865 99999998754322 23578889
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+.+++. ...+++|+.+.++++| .+||||||||++|||||+++|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 129 ~~~~l~~~i~~lp~gl~t~i~~~g--~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~Tv 206 (255)
T d2hyda1 129 KMANAHDFIMNLPQGYDTEVGERG--VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTT 206 (255)
T ss_dssp HHTTCHHHHHTSTTGGGCBCCGGG--TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEE
T ss_pred HHhCCHHHHHhccccccchhcCCC--CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEE
Confidence 999884 4567889999999988 8999999999999999999999999999999 9999999999999987542
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|+++.+. .+|||
T Consensus 207 I~itH~~~~~~-~~D~i 222 (255)
T d2hyda1 207 LIVAHRLSTIT-HADKI 222 (255)
T ss_dssp EEECSSGGGTT-TCSEE
T ss_pred EEEeCCHHHHH-hCCEE
Confidence 567777765 47875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=6.2e-48 Score=349.53 Aligned_cols=199 Identities=15% Similarity=0.188 Sum_probs=167.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+|+|++.+.+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 mle~knvsf~Y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~----- 65 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQP----- 65 (242)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEE-----
T ss_pred CEEEEEEEEECCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEE-----
Confidence 69999999999766555 999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..++...+|++ ||||||++.+|+. ||++|+.++..... ....+..+++.
T Consensus 66 -----------------i~~~~~~~~r~~-------i~~v~Q~~~lf~~--ti~eNi~~~~~~~~----~~~~~~~~~~~ 115 (242)
T d1mv5a_ 66 -----------------IDNISLENWRSQ-------IGFVSQDSAIMAG--TIRENLTYGLEGDY----TDEDLWQVLDL 115 (242)
T ss_dssp -----------------STTTSCSCCTTT-------CCEECCSSCCCCE--EHHHHTTSCTTSCS----CHHHHHHHHHH
T ss_pred -----------------eccccHHHHHhh-------eEEEccccccCCc--chhhheeccccccc----chhhHHHHHHH
Confidence 666666666666 9999999988875 99999986532211 12335666676
Q ss_pred cCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-----
Q 021147 231 FNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH----- 302 (317)
Q Consensus 231 ~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~----- 302 (317)
+++. ...+++++.+.++++| .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~i~~~g--~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~ 193 (242)
T d1mv5a_ 116 AFARSFVENMPDQLNTEVGERG--VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193 (242)
T ss_dssp HTCTTTTTSSTTGGGCEESTTS--BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE
T ss_pred HHhhhhhccCcccccccccCCC--CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6663 3456778899999988 8999999999999999999999999999999 9999999999999998642
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|+++.+.. ||||
T Consensus 194 itH~l~~~~~-~D~i 207 (242)
T d1mv5a_ 194 IAHRLSTIVD-ADKI 207 (242)
T ss_dssp ECCSHHHHHH-CSEE
T ss_pred EECCHHHHHh-CCEE
Confidence 5667776654 7775
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.6e-46 Score=334.18 Aligned_cols=203 Identities=16% Similarity=0.228 Sum_probs=163.0
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+|+|+.+.. .+.||+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 mI~i~nlsk~y~~~~~--~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~----- 68 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEE--IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIK----- 68 (230)
T ss_dssp CEEEEEEEEEEEETTE--EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEeEEEEeCCCCe--eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEE-----
Confidence 6899999999965432 1233999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC---CCC-hHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME---GDS-DVEKQYNQI 226 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~---~~~-~~~~~~~~~ 226 (317)
+...+..++++. ..+.||||||++.+++ .+||+||++++.... ... ....+++.+
T Consensus 69 -----------------i~~~~~~~~~~~---r~~~ig~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~ 127 (230)
T d1l2ta_ 69 -----------------TNDLDDDELTKI---RRDKIGFVFQQFNLIP-LLTALENVELPLIFKYRGAMSGEERRKRALE 127 (230)
T ss_dssp -----------------CTTCCHHHHHHH---HHHHEEEECTTCCCCT-TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH
T ss_pred -----------------cCcCChhhcchh---hcceEEEEecchhhCc-CccHHHHHhHHHHHhccCCCCHHHHHHHHHH
Confidence 556666554321 1234999999997654 689999999865432 212 344566777
Q ss_pred HHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 227 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 227 ~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+++.++++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+++.|+++.+.
T Consensus 128 ~l~~~~L~~~-~~~~~p---------~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~ 197 (230)
T d1l2ta_ 128 CLKMAELEER-FANHKP---------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197 (230)
T ss_dssp HHHHTTCCGG-GTTCCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhhchhhh-hhcCCh---------hhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCC
Confidence 8888887532 223455 6999999999999999999999999999999 9999999999999998653
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+ .+||||
T Consensus 198 tii~vTHd~~~a-~~~drv 215 (230)
T d1l2ta_ 198 TVVVVTHDINVA-RFGERI 215 (230)
T ss_dssp EEEEECSCHHHH-TTSSEE
T ss_pred EEEEECCCHHHH-HhCCEE
Confidence 56777765 578875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-46 Score=342.31 Aligned_cols=203 Identities=18% Similarity=0.226 Sum_probs=173.1
Q ss_pred CCCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCc
Q 021147 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (317)
Q Consensus 68 ~~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~ 147 (317)
..+.|+|+||+|+|++....+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|+++|++
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~----L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~-- 78 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPA----LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHD-- 78 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCS----EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEE--
T ss_pred CceEEEEEEEEEEeCCCCCce----eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcc--
Confidence 345799999999997654322 999999999999999999999999999999999999 999999999987
Q ss_pred eeeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHH
Q 021147 148 GTYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 227 (317)
Q Consensus 148 ~~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 227 (317)
+..++...++++ |+|+||++.+|+. |+++|+.++..... ..+++.++
T Consensus 79 --------------------i~~~~~~~~r~~-------i~~v~Q~~~l~~~--ti~~n~~~~~~~~~----~~~~i~~a 125 (253)
T d3b60a1 79 --------------------LREYTLASLRNQ-------VALVSQNVHLFND--TVANNIAYARTEEY----SREQIEEA 125 (253)
T ss_dssp --------------------TTTBCHHHHHHT-------EEEECSSCCCCSS--BHHHHHHTTTTSCC----CHHHHHHH
T ss_pred --------------------cchhhhhhhhhe-------EEEEeeccccCCc--chhhhhhhcCcccC----CHHHHHHH
Confidence 667888888877 9999999988865 89999987643222 23447778
Q ss_pred HHHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 228 ATTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 228 a~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++.+++. +..+++|+.+.+++++ ..|||||||||+|||||+++|+++||||||+ ||+.++..+++.|+++.+.
T Consensus 126 ~~~~~l~~~i~~l~~gl~t~~~~~~--~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~T 203 (253)
T d3b60a1 126 ARMAYAMDFINKMDNGLDTIIGENG--VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 203 (253)
T ss_dssp HHTTTCHHHHHHSTTGGGSBCCTTS--CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHhHHHHHHhccccchhhhcCCC--CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCE
Confidence 8888773 4457788888888888 8999999999999999999999999999999 9999999999999998642
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|+++.+. .||||
T Consensus 204 vi~itH~l~~~~-~~D~v 220 (253)
T d3b60a1 204 SLVIAHRLSTIE-QADEI 220 (253)
T ss_dssp EEEECSCGGGTT-TCSEE
T ss_pred EEEEECCHHHHH-hCCEE
Confidence 567787775 47875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-45 Score=333.70 Aligned_cols=202 Identities=16% Similarity=0.198 Sum_probs=167.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||+++|+.+.. .+.||+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 mi~v~nlsk~y~~~~~--~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~----- 68 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQE----- 68 (240)
T ss_dssp CEEEEEEEEEEECSSC--EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEeEEEEeCCCCe--eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeE-----
Confidence 6899999999965532 1223999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~ 229 (317)
+..++.+.+++. .+.||||||++.+++ .+||++|+.++.... ...+...+++.++++
T Consensus 69 -----------------i~~~~~~~~~~~----rr~ig~VfQ~~~l~~-~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~ 126 (240)
T d3dhwc1 69 -----------------LTTLSESELTKA----RRQIGMIFQHFNLLS-SRTVFGNVALPLELDNTPKDEVKRRVTELLS 126 (240)
T ss_dssp -----------------ECTTCHHHHHHH----HHHEEECCSSCCCCT-TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHH
T ss_pred -----------------eeeCChhhhhhh----hccccccccccccCC-CccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555443321 134999999997655 689999999865432 334556778899999
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++... .+.++ .+|||||+||++|||||+.+|+++|+||||+ ||+.++..+++.|+++.+.
T Consensus 127 ~vgL~~~--~~~~~---------~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi 195 (240)
T d3dhwc1 127 LVGLGDK--HDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTIL 195 (240)
T ss_dssp HHSTTTT--TSSCB---------SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HcCCchh--hhCCh---------hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEE
Confidence 9998532 23444 6999999999999999999999999999999 9999999999999998654
Q ss_pred -cCCCcchhhcccCCC
Q 021147 303 -ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 -~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 196 ~vTHdl~~~~~~~dri 211 (240)
T d3dhwc1 196 LITHEMDVVKRICDCV 211 (240)
T ss_dssp EEBSCHHHHHHHCSEE
T ss_pred EEcCCHHHHHHhCCEE
Confidence 678899999999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-46 Score=339.21 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=165.5
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
.+.|+|+||+|+|++.... .+|+||||+|++||++|||||||||||||+++|+|+++ |++|+|++||++
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~--- 77 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDV---LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKP--- 77 (251)
T ss_dssp CCCEEEEEEEECCTTSTTC---CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred cceEEEEEEEEECCCCCCC---EeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEe---
Confidence 4569999999999754311 12999999999999999999999999999999999999 999999999997
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+..++.+.++++ |+||+|++.+|+. ||++|+.++...... .....+++
T Consensus 78 -------------------i~~~~~~~~r~~-------i~~v~Q~~~lf~~--tv~eni~~g~~~~~~----~~~~~~~~ 125 (251)
T d1jj7a_ 78 -------------------LPQYEHRYLHRQ-------VAAVGQEPQVFGR--SLQENIAYGLTQKPT----MEEITAAA 125 (251)
T ss_dssp -------------------GGGBCHHHHHHH-------EEEECSSCCCCSS--BHHHHHHCSCSSCCC----HHHHHHHH
T ss_pred -------------------cchhhhHHHHHH-------hhhccccccccCc--chhhhhhhhhcccch----HHHHHHHH
Confidence 778888888887 9999999988764 999999986432221 12244444
Q ss_pred HHcCCC--cccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh---
Q 021147 229 TTFNCP--YLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH--- 302 (317)
Q Consensus 229 ~~~~l~--~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~--- 302 (317)
+..++. ...+++++.+.+.+.+ .+||||||||++|||||+++|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 126 ~~~~~~~~i~~l~~g~~~~i~~~~--~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~ 203 (251)
T d1jj7a_ 126 VKSGAHSFISGLPQGYDTEVDEAG--SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 203 (251)
T ss_dssp HHHTCHHHHHTSTTGGGCBCCSSC--SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGC
T ss_pred HHHHHHHHHHhccccchhhHhccC--ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCC
Confidence 444442 3346667777777777 7999999999999999999999999999999 9999999999999887543
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|+++.+.. ||||
T Consensus 204 Tvi~itH~l~~~~~-aDrI 221 (251)
T d1jj7a_ 204 SVLLITQHLSLVEQ-ADHI 221 (251)
T ss_dssp EEEEECSCHHHHHT-CSEE
T ss_pred EEEEEeCCHHHHHh-CCEE
Confidence 4567776644 7775
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.2e-45 Score=331.00 Aligned_cols=190 Identities=14% Similarity=0.194 Sum_probs=160.2
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
||+++||||+|++ .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 mi~v~nlsk~y~~--~a-----L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~----- 63 (229)
T d3d31a2 1 MIEIESLSRKWKN--FS-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKD----- 63 (229)
T ss_dssp CEEEEEEEEECSS--CE-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEEEEEEeCC--EE-----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEe-----
Confidence 6899999999964 24 999999999999999999999999999999999999 999999999987
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+...+.. ++. |||+||++.+|+ .+||+||+.++....... ..+++.++++.
T Consensus 64 -----------------i~~~~~~--~r~-------ig~v~Q~~~l~~-~~tV~enl~~~~~~~~~~--~~~~~~~~l~~ 114 (229)
T d3d31a2 64 -----------------VTDLSPE--KHD-------IAFVYQNYSLFP-HMNVKKNLEFGMRMKKIK--DPKRVLDTARD 114 (229)
T ss_dssp -----------------CTTSCHH--HHT-------CEEECTTCCCCT-TSCHHHHHHHHHHHHCCC--CHHHHHHHHHH
T ss_pred -----------------ccccchh--Hhc-------ceeeccccccCc-cccHHHHHHHHHhhcccc--HHHHHHHHHHH
Confidence 5444532 333 999999998665 589999999875432222 23568888999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 115 ~~l~~--~~~~~~---------~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~ 183 (229)
T d3d31a2 115 LKIEH--LLDRNP---------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (229)
T ss_dssp TTCTT--TTTSCG---------GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hcchh--hHhCCh---------hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 99842 223333 7999999999999999999999999999999 9999999999999998654
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 184 vtHd~~~~~~~~drv 198 (229)
T d3d31a2 184 ITHDQTEARIMADRI 198 (229)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EcCCHHHHHHhCCEE
Confidence 678888888888885
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.4e-46 Score=335.16 Aligned_cols=195 Identities=12% Similarity=0.129 Sum_probs=159.6
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|..|+++||+++|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 4 M~~I~v~nlsk~yg~~-~a-----l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~--- 69 (239)
T d1v43a3 4 MVEVKLENLTKRFGNF-TA-----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRD--- 69 (239)
T ss_dssp CCCEEEEEEEEEETTE-EE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred cCeEEEEEEEEEECCE-EE-----EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEccee---
Confidence 5669999999999754 33 999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCC-ChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~ 227 (317)
+...+.. ++ .|||+||++.+|+ .+||+||+.+....... ....++++.++
T Consensus 70 -------------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 120 (239)
T d1v43a3 70 -------------------VTYLPPK--DR-------NISMVFQSYAVWP-HMTVYENIAFPLKIKKFPKDEIDKRVRWA 120 (239)
T ss_dssp -------------------CTTSCGG--GG-------TEEEEEC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHH
T ss_pred -------------------cccCCcc--cc-------eEEEEeechhhcc-cchHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4444432 22 3999999997665 68999999987544333 34566778899
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.. ..+.++ .+||||||||++|||||+.+|+++||||||+ |||.++..+.+.++++.+.
T Consensus 121 l~~~~l~~--~~~~~~---------~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t 189 (239)
T d1v43a3 121 AELLQIEE--LLNRYP---------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 189 (239)
T ss_dssp HHHTTCGG--GTTSCT---------TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHcCChh--hhcCCh---------hhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 99999843 223444 6999999999999999999999999999999 9999999999999998654
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 190 ii~vTHd~~~a~~~~dri 207 (239)
T d1v43a3 190 TIYVTHDQVEAMTMGDRI 207 (239)
T ss_dssp EEEEESCHHHHHHHCSEE
T ss_pred EEEEeCCHHHHHHhCCEE
Confidence 678888888888885
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.9e-46 Score=335.87 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=164.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|..|+++||+|+|+.+... ||+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++
T Consensus 1 M~~i~v~nlsk~y~~g~~~----aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~--- 68 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKGKVV----ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRL--- 68 (242)
T ss_dssp CCCEEEEEEEEEEGGGTEE----EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred CCEEEEEeEEEEECCCCEE----EEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEE---
Confidence 4569999999999654322 2999999999999999999999999999999999999 999999999987
Q ss_pred eeEecccCCCCcccccceeeccCC---hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCC-hHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSD---SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS-DVEKQYN 224 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~-~~~~~~~ 224 (317)
+...+ ....++ +||||||++.+|+ .+||+||++++....... ....+++
T Consensus 69 -------------------i~~~~~~~~~~~rr-------~ig~vfQ~~~L~p-~ltv~eni~~~l~~~~~~~~~~~~~v 121 (242)
T d1oxxk2 69 -------------------VASNGKLIVPPEDR-------KIGMVFQTWALYP-NLTAFENIAFPLTNMKMSKEEIRKRV 121 (242)
T ss_dssp -------------------EEETTEESSCGGGS-------CEEEEETTSCCCT-TSCHHHHHHGGGTTSSCCHHHHHHHH
T ss_pred -------------------eecCchhhcchhhc-------cceEEeccccccc-cccHHHHhhhhhHhhcCCHHHHHHHH
Confidence 32222 112223 3999999997665 689999999875443333 4556778
Q ss_pred HHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-
Q 021147 225 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH- 302 (317)
Q Consensus 225 ~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~- 302 (317)
.++++.+++.. ..+.++ .+||||||||++|||||+.+|+++|+||||+ ||+.++..+.+.|+++.+.
T Consensus 122 ~~~l~~~gL~~--~~~~~p---------~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~ 190 (242)
T d1oxxk2 122 EEVAKILDIHH--VLNHFP---------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (242)
T ss_dssp HHHHHHTTCGG--GTTSCG---------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhhcChHh--hhhCCh---------hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc
Confidence 89999999842 233455 7999999999999999999999999999999 9999999999999998653
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 191 g~tvi~vTHd~~~~~~~~dri 211 (242)
T d1oxxk2 191 GVTLLVVSHDPADIFAIADRV 211 (242)
T ss_dssp CCEEEEEESCHHHHHHHCSEE
T ss_pred CCEEEEEECCHHHHHHhCCEE
Confidence 678888888888885
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-46 Score=333.46 Aligned_cols=192 Identities=16% Similarity=0.191 Sum_probs=133.0
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|+++||+|+|++.. + |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 1 Iev~nv~k~yg~~~-~-----l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~------ 63 (232)
T d2awna2 1 VQLQNVTKAWGEVV-V-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKR------ 63 (232)
T ss_dssp EEEEEEEEEETTEE-E-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSC------
T ss_pred CEEEEEEEEECCEE-E-----EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEE------
Confidence 78999999997543 3 999999999999999999999999999999999999 999999999987
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccC-CCChHHHHHHHHHHHH
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATT 230 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~a~~ 230 (317)
+...+.. ++ .||||||++.+++ .+||+||+.++.... ...+...+++.++++.
T Consensus 64 ----------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~ 117 (232)
T d2awna2 64 ----------------MNDTPPA--ER-------GVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117 (232)
T ss_dssp ----------------CTTSCGG--GT-------CEEEECSSCCC----------------------CHHHHHHHHHHHH
T ss_pred ----------------CCCCchh--hc-------eeeeecccccccc-chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4444432 22 3999999997655 699999999875433 2334566778899999
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------- 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------- 302 (317)
+++.. ..+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+++.|+++.+.
T Consensus 118 ~~l~~--~~~~~~---------~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~ 186 (232)
T d2awna2 118 LQLAH--LLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 186 (232)
T ss_dssp C--------------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred CCChh--hhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99842 223344 6999999999999999999999999999999 9999999999999998654
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 187 vTHd~~~a~~~~dri 201 (232)
T d2awna2 187 VTHDQVEAMTLADKI 201 (232)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 678888888888885
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.6e-46 Score=334.96 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=163.7
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|..|+++||+|+|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 1 M~~i~v~nl~k~yg~~-~a-----l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~--- 66 (240)
T d1g2912 1 MAGVRLVDVWKVFGEV-TA-----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKL--- 66 (240)
T ss_dssp CEEEEEEEEEEEETTE-EE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE---
T ss_pred CCcEEEEeEEEEECCE-EE-----EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEE---
Confidence 4569999999999754 33 999999999999999999999999999999999999 999999999986
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCC-CChHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIV 227 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~ 227 (317)
+...+..... ....+.|||+||++.+++ .+||+||++++..... ......+++.++
T Consensus 67 -------------------i~~~~~~~~~---~~~~r~ig~v~Q~~~L~~-~ltV~eni~~~~~~~~~~~~e~~~~v~~~ 123 (240)
T d1g2912 67 -------------------VADPEKGIFV---PPKDRDIAMVFQSYALYP-HMTVYDNIAFPLKLRKVPRQEIDQRVREV 123 (240)
T ss_dssp -------------------EEEGGGTEEC---CGGGSSEEEECSCCCCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -------------------ecccchhhhc---ccccccceecccchhhcc-hhhhhHhhhhhHHHcCCCHHHHHHHHHHH
Confidence 2222111100 000123999999997664 6899999998754333 334566778899
Q ss_pred HHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 228 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 228 a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
++.+++.. ..+.++ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 l~~~~l~~--~~~~~p---------~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 192 (240)
T d1g2912 124 AELLGLTE--LLNRKP---------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192 (240)
T ss_dssp HHHHTCGG--GTTCCG---------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHcCChh--HhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCE
Confidence 99999843 233455 7999999999999999999999999999999 9999999999999998654
Q ss_pred ---cCCCcchhhcccCCC
Q 021147 303 ---ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ---~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 193 vi~vTHd~~~~~~~~drv 210 (240)
T d1g2912 193 TIYVTHDQVEAMTMGDRI 210 (240)
T ss_dssp EEEEESCHHHHHHHCSEE
T ss_pred EEEEcCCHHHHHHhCCEE
Confidence 678888888888885
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.1e-44 Score=324.97 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=164.1
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
|.+|+++||+++|++.+ + |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 2 M~iL~v~nlsk~yg~~~-a-----L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~--- 67 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEFK-A-----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKD--- 67 (254)
T ss_dssp CEEEEEEEEEEEETTEE-E-----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred cceEEEEEEEEEECCeE-E-----EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEe---
Confidence 67899999999997653 3 999999999999999999999999999999999999 999999999997
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc--------------C
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM--------------E 214 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~--------------~ 214 (317)
+...++.+.++. .|+|+||++.+++ .+||+||+.++... .
T Consensus 68 -------------------i~~~~~~~~~~~------gi~~v~Q~~~~~~-~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 121 (254)
T d1g6ha_ 68 -------------------ITNKEPAELYHY------GIVRTFQTPQPLK-EMTVLENLLIGEICPGESPLNSLFYKKWI 121 (254)
T ss_dssp -------------------CTTCCHHHHHHH------TEEECCCCCGGGG-GSBHHHHHHGGGTSTTSCHHHHHHHCSSC
T ss_pred -------------------ccchhHHHHHHh------cCCccCCccccCC-CCeeeeeeeehhhhccccchhhhhhhccc
Confidence 556666554432 4999999998654 68999999875321 1
Q ss_pred CCChHHHHHHHHHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHH
Q 021147 215 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIV 293 (317)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~ 293 (317)
.......+++.++++.+++.... +..+ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.
T Consensus 122 ~~~~~~~~~~~~~l~~~~l~~~~---~~~~--------~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~ 190 (254)
T d1g6ha_ 122 PKEEEMVEKAFKILEFLKLSHLY---DRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190 (254)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGT---TSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCcchhc---cCch--------hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHH
Confidence 12233345566778888864222 2333 7999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHh------cCCCcchhhcccCCC
Q 021147 294 DMLRYCLEH------ADRNLSCKSCARNKV 317 (317)
Q Consensus 294 ~~l~~l~~~------~~~~~~~~~~~~~~~ 317 (317)
+.|+++.+. ..|++..+..+||||
T Consensus 191 ~~i~~l~~~g~til~vsHdl~~~~~~~Drv 220 (254)
T d1g6ha_ 191 NHVLELKAKGITFLIIEHRLDIVLNYIDHL 220 (254)
T ss_dssp HHHHHHHHTTCEEEEECSCCSTTGGGCSEE
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHhCCEE
Confidence 999998654 678899999999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.7e-44 Score=322.53 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=158.4
Q ss_pred CCceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCce
Q 021147 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (317)
Q Consensus 69 ~~~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~ 148 (317)
..+|+++||+++|++.. + |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++
T Consensus 4 d~~Lev~~l~k~yg~~~-a-----l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~--- 69 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIH-A-----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQD--- 69 (240)
T ss_dssp SEEEEEEEEEEEETTEE-E-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE---
T ss_pred ceEEEEeeEEEEECCEE-E-----EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEecccc---
Confidence 34799999999997543 3 999999999999999999999999999999999999 999999999997
Q ss_pred eeEecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 021147 149 TYFLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 228 (317)
Q Consensus 149 ~~~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a 228 (317)
+...+....++ ..|+|+||++.+|+ .+||++|+.+............+.+..++
T Consensus 70 -------------------i~~~~~~~~~r------~gi~~~~q~~~l~~-~ltv~en~~~~~~~~~~~~~~~~~~~~~~ 123 (240)
T d1ji0a_ 70 -------------------ITNKPAHVINR------MGIALVPEGRRIFP-ELTVYENLMMGAYNRKDKEGIKRDLEWIF 123 (240)
T ss_dssp -------------------CTTCCHHHHHH------TTEEEECSSCCCCT-TSBHHHHHHGGGTTCCCSSHHHHHHHHHH
T ss_pred -------------------cccccHHHHHH------hcccccCcccccCC-cccHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555443322 13789999987665 68999999876543333344444455555
Q ss_pred HHc-CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh----
Q 021147 229 TTF-NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH---- 302 (317)
Q Consensus 229 ~~~-~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~---- 302 (317)
..+ ++. ... +... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 124 ~~~~~l~--~~~-~~~~--------~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~ti 192 (240)
T d1ji0a_ 124 SLFPRLK--ERL-KQLG--------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192 (240)
T ss_dssp HHCHHHH--TTT-TSBS--------SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHhhChH--HHH-hCch--------hhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 554 221 122 2222 6999999999999999999999999999999 9999999999999998654
Q ss_pred --cCCCcchhhcccCCC
Q 021147 303 --ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 --~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 193 l~~tH~l~~~~~~~drv 209 (240)
T d1ji0a_ 193 LLVEQNALGALKVAHYG 209 (240)
T ss_dssp EEEESCHHHHHHHCSEE
T ss_pred EEEeCCHHHHHHhCCEE
Confidence 567788888888885
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-43 Score=322.53 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=161.8
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++||+|+|++.. + |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|++... +
T Consensus 2 ~Lev~nl~k~yg~~~-a-----l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~-~ 69 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHE-V-----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINL-V 69 (258)
T ss_dssp CEEEEEEEEEETTEE-E-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCE-E
T ss_pred eEEEEEEEEEECCEE-E-----EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEecc-C
Confidence 589999999997543 3 999999999999999999999999999999999999 999999999986210 0
Q ss_pred EecccCCCCcccccceeeccCC---hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhh-cc-CCCChHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSD---SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SM-EGDSDVEKQYNQ 225 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~-~~-~~~~~~~~~~~~ 225 (317)
-+++ ......+ ...+++ +||||||++.++ ..+||.+|+.++. .. ........+++.
T Consensus 70 ~~~~-----------~~~~~~~~~~~~~~r~-------~ig~vfQ~~~l~-~~~tv~env~~~~~~~~~~~~~~~~~~~~ 130 (258)
T d1b0ua_ 70 RDKD-----------GQLKVADKNQLRLLRT-------RLTMVFQHFNLW-SHMTVLENVMEAPIQVLGLSKHDARERAL 130 (258)
T ss_dssp ECTT-----------SSEEESCHHHHHHHHH-------HEEEECSSCCCC-TTSCHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred Cccc-----------hhcccccHhHHHHHhc-------ceEEEEechhhc-cchhcchhhhhhHHHhcCCCHHHHHHHHH
Confidence 0000 0000111 122333 399999999755 4689999998763 22 233345567788
Q ss_pred HHHHHcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh--
Q 021147 226 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-- 302 (317)
Q Consensus 226 ~~a~~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-- 302 (317)
++++.+++... ..+.++ .+|||||+||++|||||+.+|+++||||||+ ||+.++..+.+.|+++.+.
T Consensus 131 ~~l~~~~l~~~-~~~~~p---------~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~ 200 (258)
T d1b0ua_ 131 KYLAKVGIDER-AQGKYP---------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 200 (258)
T ss_dssp HHHHHTTCCHH-HHTSCG---------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCchh-hhccCc---------ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCC
Confidence 89999998422 122355 6999999999999999999999999999999 9999999999999998754
Q ss_pred ----cCCCcchhhcccCCC
Q 021147 303 ----ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ----~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 201 til~vtHdl~~~~~~adri 219 (258)
T d1b0ua_ 201 TMVVVTHEMGFARHVSSHV 219 (258)
T ss_dssp CEEEECSCHHHHHHHCSEE
T ss_pred ceEEEeCCHHHHHHhCCEE
Confidence 677888888889885
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.3e-42 Score=310.21 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=160.3
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++||+++|++.. + |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 aI~v~nl~k~yg~~~-v-----l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~----- 65 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKE-I-----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKN----- 65 (238)
T ss_dssp CEEEEEEEEEETTEE-E-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-----
T ss_pred CEEEEeEEEEECCEE-E-----EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEe-----
Confidence 589999999997654 4 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhcc-CCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM-EGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~a~ 229 (317)
+.. .+..+++. +||+||+..++. .+|+.||+.+.... ....+...+.+..+++
T Consensus 66 -----------------i~~-~~~~~~~~-------i~~vpq~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 119 (238)
T d1vpla_ 66 -----------------VVE-EPHEVRKL-------ISYLPEEAGAYR-NMQGIEYLRFVAGFYASSSSEIEEMVERATE 119 (238)
T ss_dssp -----------------TTT-CHHHHHTT-------EEEECTTCCCCT-TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred -----------------ccc-ChHHHHhh-------EeEeeeccccCC-CccHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 322 33344444 999999986554 68999999876533 3333444566677888
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh------
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH------ 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~------ 302 (317)
.+++.... .... .+||||||||++|||||+.+|+++||||||+ ||+.++..+.++++++.+.
T Consensus 120 ~~~l~~~~---~~~~--------~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~ 188 (238)
T d1vpla_ 120 IAGLGEKI---KDRV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 188 (238)
T ss_dssp HHCCGGGG---GSBG--------GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hCCCHHHH---hhhh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 88874222 2233 7999999999999999999999999999999 9999999999999998654
Q ss_pred cCCCcchhhcccCCC
Q 021147 303 ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 189 ~tH~l~~~~~~~drv 203 (238)
T d1vpla_ 189 SSHNMLEVEFLCDRI 203 (238)
T ss_dssp EECCHHHHTTTCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 677888888888885
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9e-41 Score=300.72 Aligned_cols=187 Identities=20% Similarity=0.253 Sum_probs=153.3
Q ss_pred eEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeE
Q 021147 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (317)
Q Consensus 72 I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~ 151 (317)
|++ ++.++|++- . + ||||+++ +|+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 3 l~v-~~~k~~g~~--~-----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~------ 61 (240)
T d2onka1 3 LKV-RAEKRLGNF--R-----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGAD------ 61 (240)
T ss_dssp EEE-EEEEEETTE--E-----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEE------
T ss_pred EEE-EEEEEECCE--E-----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEE------
Confidence 677 678888643 2 5 7999995 68999999999999999999999999 999999999987
Q ss_pred ecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHc
Q 021147 152 LQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 231 (317)
Q Consensus 152 ~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~ 231 (317)
+..+++. ++ .||||||++.+|+ .+||+||+.++... .......+++.++++.+
T Consensus 62 ----------------i~~~~~~--~r-------~ig~v~Q~~~l~~-~ltV~enl~~~l~~-~~~~~~~~~v~~~l~~~ 114 (240)
T d2onka1 62 ----------------ITPLPPE--RR-------GIGFVPQDYALFP-HLSVYRNIAYGLRN-VERVERDRRVREMAEKL 114 (240)
T ss_dssp ----------------CTTSCTT--TS-------CCBCCCSSCCCCT-TSCHHHHHHTTCTT-SCHHHHHHHHHHHHHTT
T ss_pred ----------------CCcCCHH--Hc-------Cceeeccchhhcc-cchhhHhhhhhhcc-cCHHHHHHHHHHHHHhc
Confidence 4444432 22 3999999997665 68999999986421 22234456788899999
Q ss_pred CCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh-------c
Q 021147 232 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH-------A 303 (317)
Q Consensus 232 ~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~-------~ 303 (317)
++.. +.+.++ .+||||||||++|||||+.+|+++||||||+ ||+.++..+.+.++++.+. .
T Consensus 115 gl~~--~~~~~~---------~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~v 183 (240)
T d2onka1 115 GIAH--LLDRKP---------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183 (240)
T ss_dssp TCTT--TTTCCG---------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CcHh--hhhCCh---------hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9843 233444 7999999999999999999999999999999 9999999999999998654 6
Q ss_pred CCCcchhhcccCCC
Q 021147 304 DRNLSCKSCARNKV 317 (317)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (317)
.|++..+..+||||
T Consensus 184 tHd~~~~~~~adri 197 (240)
T d2onka1 184 THDLIEAAMLADEV 197 (240)
T ss_dssp ESCHHHHHHHCSEE
T ss_pred eCCHHHHHHhCCEE
Confidence 77788888888875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.9e-38 Score=275.66 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=138.6
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
.|+++||++.|+. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~lev~~ls~~y~~--~v-----l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~----- 64 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVP----- 64 (200)
T ss_dssp EEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEE-----
T ss_pred eEEEEEEEEEeCC--eE-----EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEe-----
Confidence 4899999999953 34 999999999999999999999999999999999999 999999999986
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhc-cCCCChHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-MEGDSDVEKQYNQIVAT 229 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~a~ 229 (317)
+.. ++. .++|+||+.. ++..+|+.+++.+... +..... ..++.++++
T Consensus 65 -----------------i~~-----~~~-------~i~~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~ 112 (200)
T d1sgwa_ 65 -----------------ITK-----VKG-------KIFFLPEEII-VPRKISVEDYLKAVASLYGVKVN--KNEIMDALE 112 (200)
T ss_dssp -----------------GGG-----GGG-------GEEEECSSCC-CCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHH
T ss_pred -----------------hhH-----hcC-------cEEEEeeccc-CCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHH
Confidence 322 222 3999999875 4456899999876543 222222 344667777
Q ss_pred HcCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 230 TFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 230 ~~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
.+++.. + ...+ .+||||||||+++|||++.+|+++||||||+ ||+.++..+++.|.++.+.
T Consensus 113 ~~~~~~--~--~~~~--------~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~ 174 (200)
T d1sgwa_ 113 SVEVLD--L--KKKL--------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 174 (200)
T ss_dssp HTTCCC--T--TSBG--------GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred HcCCcc--c--cccc--------CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC
Confidence 777521 1 1223 6899999999999999999999999999999 9999999999999988654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-39 Score=297.35 Aligned_cols=167 Identities=15% Similarity=0.154 Sum_probs=134.1
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceeeEecccCCCCcccccceeeccCC
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGVRHGELVIRRSD 172 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~~~Q~~~l~~~~~~~~~~~~~~~ 172 (317)
|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~---------------------------- 98 (281)
T d1r0wa_ 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSGR---------------------------- 98 (281)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEECCSC----------------------------
T ss_pred EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEEECCE----------------------------
Confidence 999999999999999999999999999999999999 99999998874
Q ss_pred hHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHHcCCC--cccCCCCCCEEEEecc
Q 021147 173 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRDDKPVVVVTHG 250 (317)
Q Consensus 173 ~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~~~~i~~hg 250 (317)
|+|+||++.+|+. ||++|+.++... . ......+++.+.+. ...++++..+.+++.+
T Consensus 99 --------------i~~v~Q~~~l~~~--tv~eni~~~~~~---~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 156 (281)
T d1r0wa_ 99 --------------VSFCSQFSWIMPG--TIKENIIFGVSY---D---EYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 156 (281)
T ss_dssp --------------EEEECSSCCCCSE--EHHHHHTTTSCC---C---HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC
T ss_pred --------------EEEEeccccccCc--eeeccccccccc---c---chHHHHHHHHHHhHHHHHhchhhhhhhhhhhc
Confidence 8889998877765 999999876422 1 12345566666652 3446667788888877
Q ss_pred chhcCcHHHHHhhcccceeccccceeeccCCCC-CCHHHHHHHHHHH-HHHHHh-----cCCCcchhhcccCCC
Q 021147 251 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES-SDPENELIIVDML-RYCLEH-----ADRNLSCKSCARNKV 317 (317)
Q Consensus 251 ~~~~LSgG~~qRl~iaral~~~p~ilIlDEPts-LD~~t~~~l~~~l-~~l~~~-----~~~~~~~~~~~~~~~ 317 (317)
.+||||||||++|||||+++|+++||||||+ ||+.++..+++.+ ..+.+. ..|+++.+ ..||||
T Consensus 157 --~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI 227 (281)
T d1r0wa_ 157 --VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKI 227 (281)
T ss_dssp --TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEE
Confidence 7999999999999999999999999999999 9999999988753 322111 34556555 346764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-36 Score=272.78 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=151.5
Q ss_pred ceEEEeEEEEcCCCCccccccCceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcccCceee
Q 021147 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (317)
Q Consensus 71 ~I~~~nls~~y~~~~~~~~~~~L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~~~~~~ 150 (317)
+|+++||+++| . |++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|++
T Consensus 3 il~~~dv~~~~-----~-----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~------~~~G~I~~~g~~----- 61 (231)
T d1l7vc_ 3 VMQLQDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGKGSIQFAGQP----- 61 (231)
T ss_dssp EEEEEEECCTT-----T-----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC------CCSSEEEESSSB-----
T ss_pred EEEEECcccCc-----e-----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------CCceEEEECCEE-----
Confidence 68999998655 2 99999999999999999999999999999999974 678999999997
Q ss_pred EecccCCCCcccccceeeccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 021147 151 FLQEYTIPRGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 230 (317)
Q Consensus 151 ~~Q~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~a~~ 230 (317)
+..++...++.. .+|++|.... ....++++++.+.... ....+.+.++++.
T Consensus 62 -----------------i~~~~~~~~~~~-------~~~~~~~~~~-~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~ 112 (231)
T d1l7vc_ 62 -----------------LEAWSATKLALH-------RAYLSQQQTP-PFATPVWHYLTLHQHD----KTRTELLNDVAGA 112 (231)
T ss_dssp -----------------GGGSCHHHHHHH-------EEEECSCCCC-CSSCBHHHHHHHHCSC----TTCHHHHHHHHHH
T ss_pred -----------------CCcCCHHHHHhh-------ceeeeccccC-CccccHHHHhhhccch----hhHHHHHHHHHHh
Confidence 666777776665 8899887642 3345788888765432 1223456778888
Q ss_pred cCCCcccCCCCCCEEEEeccchhcCcHHHHHhhcccceecc-------ccceeeccCCCC-CCHHHHHHHHHHHHHHHHh
Q 021147 231 FNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGI-------PPAKQIFDIPES-SDPENELIIVDMLRYCLEH 302 (317)
Q Consensus 231 ~~l~~~~l~~~~~~~i~~hg~~~~LSgG~~qRl~iaral~~-------~p~ilIlDEPts-LD~~t~~~l~~~l~~l~~~ 302 (317)
+++.... +... .+|||||+||+++|||+++ +|+++||||||+ ||+.++..+.++++++.+.
T Consensus 113 ~~l~~~~---~~~~--------~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~ 181 (231)
T d1l7vc_ 113 LALDDKL---GRST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ 181 (231)
T ss_dssp TTCTTTT---TSBG--------GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCHhHh---CcCh--------hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 8874222 3333 7999999999999999987 779999999999 9999999999999998654
Q ss_pred ------cCCCcchhhcccCCC
Q 021147 303 ------ADRNLSCKSCARNKV 317 (317)
Q Consensus 303 ------~~~~~~~~~~~~~~~ 317 (317)
..|++..+..+||||
T Consensus 182 g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 182 GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp TCEEEECCCCHHHHHHHCSBC
T ss_pred CCEEEEEeCCHHHHHHHCCEE
Confidence 678888899999986
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=2.7e-14 Score=119.16 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=32.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
.++|+||||||||||++.|+|.++ |..|.+.+.+.+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~-----~~~g~~~~~~~~ 37 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC-----CCcceEEECCcc
Confidence 379999999999999999999999 889999987754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=4.5e-08 Score=90.70 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=39.9
Q ss_pred hhcCcHHHHHhhccccee----ccccceeeccCCCC-CCHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGELL----GIPPAKQIFDIPES-SDPENELIIVDMLRYC 299 (317)
Q Consensus 252 ~~~LSgG~~qRl~iaral----~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l 299 (317)
...|||||+.++++|-.+ ...+++++||||++ ||+.+...+.++|.++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~ 382 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH 382 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 367899999886665433 35778999999999 9999999999999876
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.53 E-value=1.3e-08 Score=89.90 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=101.2
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+++||+||++.|||++++.++. ..+++..+.++++.++++.+|+-. +.+.++.+.|+
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------------~~~~~p~~LSG 143 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------------VLNHFPRELSG 143 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCGGGSCH
T ss_pred hccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHh-----------------hhhCChhhCCH
Confidence 45799999999999998888753 346777888888888888888621 13556778899
Q ss_pred HHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++|+++.. |... ...|.+++++||. .+..+|+.... +.-|+.+..
T Consensus 144 GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~v-m~~G~iv~~ 222 (242)
T d1oxxk2 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV-LVKGKLVQV 222 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE-EETTEEEEE
T ss_pred HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEE-EECCEEEEE
Confidence 99999999999877 3110 2348899999994 67788887776 888999999
Q ss_pred ccceeeccCCCCCCHHHHHHH
Q 021147 272 PPAKQIFDIPESSDPENELII 292 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~~l 292 (317)
+++.-|++.|.+ +++.+.+
T Consensus 223 g~~~el~~~P~~--~~~~~fl 241 (242)
T d1oxxk2 223 GKPEDLYDNPVS--IQVASLI 241 (242)
T ss_dssp ECHHHHHHSCSS--HHHHHHH
T ss_pred cCHHHHHhCCCC--HHHHhcc
Confidence 999999999998 7776543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.37 E-value=2.9e-08 Score=87.49 Aligned_cols=127 Identities=15% Similarity=0.205 Sum_probs=100.1
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+.+||+||++.|++++++.++. +.+++..+.++++.++++.+++-. +.+.++.+.|+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-----------------~~~~~p~~LSG 142 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------------LLNRKPRELSG 142 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------------GTTCCGGGSCH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCH
Confidence 45799999999999998888753 456788888888888888877521 13456778899
Q ss_pred HHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++|+++.. |... ...|.+++++||. ++..+|+.... +.-|+.+..
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~v-m~~G~iv~~ 221 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV-MNRGVLQQV 221 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEE-EECCEEEEE
Confidence 99999999999877 3110 2338999999994 77788887776 888999999
Q ss_pred ccceeeccCCCCCCHHHHHH
Q 021147 272 PPAKQIFDIPESSDPENELI 291 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~~ 291 (317)
+++-.|++.|.+ +++++.
T Consensus 222 G~~~el~~~P~~--~~~~~f 239 (240)
T d1g2912 222 GSPDEVYDKPAN--TFVAGF 239 (240)
T ss_dssp ECHHHHHHSCSB--HHHHHH
T ss_pred cCHHHHHhCCCC--HHHHHh
Confidence 999999999998 887654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.33 E-value=2e-06 Score=76.36 Aligned_cols=49 Identities=20% Similarity=0.068 Sum_probs=40.4
Q ss_pred hhcCcHHHHHhhcccce----eccccceeeccCCCC-CCHHHHHHHHHHHHHHH
Q 021147 252 LLSLTDRARIRTYLGEL----LGIPPAKQIFDIPES-SDPENELIIVDMLRYCL 300 (317)
Q Consensus 252 ~~~LSgG~~qRl~iara----l~~~p~ilIlDEPts-LD~~t~~~l~~~l~~l~ 300 (317)
...+|+|+++...++.. ....+.++++|||.+ |+|.....+.+.|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~ 270 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS 270 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc
Confidence 46899999997655543 345778999999999 99999999999998874
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=98.33 E-value=5.2e-08 Score=86.76 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=101.8
Q ss_pred CceeeEecccCCCCccccccee------eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~------~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
+++||+||++.+++++++.++. ...++..+.++++.++++.+++.+. +.+.++.+.|+
T Consensus 89 ~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------------~~~~~p~~LSG 152 (258)
T d1b0ua_ 89 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER----------------AQGKYPVHLSG 152 (258)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH----------------HHTSCGGGSCH
T ss_pred cceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchh----------------hhccCcccccH
Confidence 4689999999999988887642 2456777778888888888776321 11345667899
Q ss_pred HHHHHHHHHHHcCC-Cccc------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceeccc
Q 021147 220 EKQYNQIVATTFNC-PYLS------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~ 272 (317)
+++|++.+|+++.. |... ..+|.+++++|| ..+..+|+.... |.-|+.+..+
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~v-m~~G~iv~~g 231 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF-LHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 99999999998876 3110 345899999999 477889998888 8999999999
Q ss_pred cceeeccCCCCCCHHHHHHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELIIVDML 296 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~l~~~l 296 (317)
++-.|++.|.+ +++++.+...+
T Consensus 232 ~~~ev~~~P~~--~~~~~ll~~~l 253 (258)
T d1b0ua_ 232 DPEQVFGNPQS--PRLQQFLKGSL 253 (258)
T ss_dssp CHHHHHHSCCS--HHHHHHHHHHH
T ss_pred CHHHHHhCCCC--HHHHHHHhCcc
Confidence 99999999999 88887765444
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.30 E-value=4.5e-08 Score=86.19 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=93.3
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.+||+||++.+|++.++.++. ..+++..+.++++.++++.+++-. +.+.++...|++
T Consensus 78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSGG 140 (239)
T d1v43a3 78 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------------LLNRYPAQLSGG 140 (239)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------------GTTSCTTTCCSS
T ss_pred ceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------hhcCChhhCCHH
Confidence 5699999999999998888743 456788888888888888887621 235677888999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... ...|.+++++||. ++..+|+.... +.-||.+..+
T Consensus 141 q~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~v-m~~G~iv~~G 219 (239)
T d1v43a3 141 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV-MNRGQLLQIG 219 (239)
T ss_dssp CHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 3110 2348999999994 77788888877 8899999999
Q ss_pred cceeeccCCCCCCHHHHHH
Q 021147 273 PAKQIFDIPESSDPENELI 291 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~~ 291 (317)
++-.|+..|.+ +++++.
T Consensus 220 ~~~el~~~P~~--~~~~~~ 236 (239)
T d1v43a3 220 SPTEVYLRPNS--VFVATF 236 (239)
T ss_dssp CHHHHHHCCSB--HHHHHH
T ss_pred CHHHHHhCCCC--HHHHHh
Confidence 99999999988 776554
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=2.9e-08 Score=87.47 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=97.8
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.+|||||+++++++.++.++. +.+++..+.++++.++++.+|+-. +.+.++.+.|++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------------~~~~~~~~LSGG 144 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------------KHDSYPSNLSGG 144 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------------TTSSCBSCCCHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------------hhhCChhhCCHH
Confidence 3589999999999988887743 456777788888888888888621 135577889999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... ...|.+++++||. .+..+|+.... +.-|+.+..+
T Consensus 145 ~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~v-l~~G~iv~~G 223 (240)
T d3dhwc1 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV-ISNGELIEQD 223 (240)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEE-EETTEEEEEE
T ss_pred HHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEE-EECCEEEEEC
Confidence 9999999999877 3110 2348999999994 77788888777 8899999999
Q ss_pred cceeeccCCCCCCHHHH
Q 021147 273 PAKQIFDIPESSDPENE 289 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~ 289 (317)
++-.||+.|.+ ++++
T Consensus 224 ~~~ei~~~P~~--~~t~ 238 (240)
T d3dhwc1 224 TVSEVFSHPKT--PLAQ 238 (240)
T ss_dssp ETTTTTCSSCC--TTTT
T ss_pred CHHHHHhCCCC--hHHc
Confidence 99999999988 5543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=5.6e-08 Score=85.24 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=71.5
Q ss_pred cCceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChH
Q 021147 145 VGDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 219 (317)
Q Consensus 145 ~~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~ 219 (317)
.+.+||+||++.+++++++.++. +.+.+.++.++++.++++.+++-. +.+.++...|+
T Consensus 71 ~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------------~~~~~~~~LSG 133 (232)
T d2awna2 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------------LLDRKPKALSG 133 (232)
T ss_dssp GTCEEEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------
T ss_pred hceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-----------------hhhCChhhCCH
Confidence 35689999999999998888754 345566677777888887777521 12456677889
Q ss_pred HHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceecc
Q 021147 220 EKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 271 (317)
Q Consensus 220 ~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~ 271 (317)
+++|++++|+++.. |... ...|.+++++||. ++..+|+.... +.-|+.+..
T Consensus 134 GqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~v-m~~G~iv~~ 212 (232)
T d2awna2 134 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV-LDAGRVAQV 212 (232)
T ss_dssp ------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE-EETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEE
Confidence 99999999988766 3110 2458999999994 77888888877 889999999
Q ss_pred ccceeeccCCCCCCHHHHHH
Q 021147 272 PPAKQIFDIPESSDPENELI 291 (317)
Q Consensus 272 ~p~ilIlDEPtsLD~~t~~~ 291 (317)
+++..|+..|.+ +++++.
T Consensus 213 G~~~el~~~P~~--~~v~~f 230 (232)
T d2awna2 213 GKPLELYHYPAD--RFVAGF 230 (232)
T ss_dssp ECHHHHHHSCSB--HHHHHH
T ss_pred eCHHHHHhCCCC--HHHHHh
Confidence 999999999988 666543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=4.2e-07 Score=74.46 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.3
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++.+|++.+| +++|+|+|||||||++.+|.-++-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 77788888876 899999999999999999986543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.79 E-value=2.8e-06 Score=73.96 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=88.2
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
+.+||+||++.+|+++++.++. ..+.+. ++++.++++.+++.. +.+..+...|++
T Consensus 72 r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~~-----------------~~~~~~~~LSGG 131 (229)
T d3d31a2 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEH-----------------LLDRNPLTLSGG 131 (229)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCTT-----------------TTTSCGGGSCHH
T ss_pred hcceeeccccccCccccHHHHHHHHHhhccccH---HHHHHHHHHHhcchh-----------------hHhCChhhCCHH
Confidence 4689999999999998888753 223332 223455555555421 124456778999
Q ss_pred HHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccc
Q 021147 221 KQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 272 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~ 272 (317)
++|++++|+++.. |... ...|.+++++||. ++..+|+.... +.-|+.+..+
T Consensus 132 ~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~v-m~~G~iv~~g 210 (229)
T d3d31a2 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV-VMDGKLIQVG 210 (229)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE-ESSSCEEEEE
T ss_pred HhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEE-EECCEEEEEc
Confidence 9999999999877 3110 2458899999994 67788888877 8889999999
Q ss_pred cceeeccCCCCCCHHHHH
Q 021147 273 PAKQIFDIPESSDPENEL 290 (317)
Q Consensus 273 p~ilIlDEPtsLD~~t~~ 290 (317)
++--|+.+|.+ +++++
T Consensus 211 ~~~el~~~P~~--~~v~~ 226 (229)
T d3d31a2 211 KPEEIFEKPVE--GRVAS 226 (229)
T ss_dssp CHHHHHSSCCT--THHHH
T ss_pred CHHHHHhCCCC--HHHHh
Confidence 99999999988 55544
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.79 E-value=2.3e-06 Score=74.95 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=90.9
Q ss_pred CceeeEecccCCCCccccccee---eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHHHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 222 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~ 222 (317)
+.+||+||++.+||++++.++. ++.++..+.++++.++++.+|+- + +.+.++.+.|++++
T Consensus 70 r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~----------------~~~~~~~~LSGG~k 132 (240)
T d2onka1 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-H----------------LLDRKPARLSGGER 132 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-T----------------TTTCCGGGSCHHHH
T ss_pred cCceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-h----------------hhhCChhhCCHHHH
Confidence 5789999999999998888753 44566677777788888888762 1 13456677899999
Q ss_pred HHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceeccccc
Q 021147 223 YNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPA 274 (317)
Q Consensus 223 ~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~p~ 274 (317)
|++++|+++.. |... ...+.+++++||. ++..+|+.... +.-|+.+..+.+
T Consensus 133 QRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~v-m~~G~ii~~G~~ 211 (240)
T d2onka1 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV-MLNGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE-EETTEEEEEECH
T ss_pred HHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE-EECCEEEEEecH
Confidence 99999999876 3110 2348899999994 77788887777 788899988888
Q ss_pred eeeccCCCC
Q 021147 275 KQIFDIPES 283 (317)
Q Consensus 275 ilIlDEPts 283 (317)
-.++..|..
T Consensus 212 ~el~~~~~~ 220 (240)
T d2onka1 212 KELFSAKNG 220 (240)
T ss_dssp HHHHHSCCS
T ss_pred HHHhcCCCH
Confidence 777766643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=5.2e-06 Score=68.66 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.+++|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=7.5e-06 Score=65.67 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999988765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.71 E-value=7.6e-06 Score=65.85 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|-++.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999997764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.71 E-value=6.9e-06 Score=66.29 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.|++++|+|++||||||+++.|...+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999988764
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=1.1e-05 Score=69.78 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i 141 (317)
+|++++++|+||+|||||+|.|.+-.. -..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-----~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-----hhccCccc
Confidence 689999999999999999999998765 44566653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=1.2e-05 Score=64.74 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.++.|+|++||||||+++.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4568899999999999999999998765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=1.1e-05 Score=65.00 Aligned_cols=25 Identities=36% Similarity=0.786 Sum_probs=23.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|+||+|||||||++.++..+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3588999999999999999999997
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.56 E-value=2e-05 Score=63.25 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..++.|.|++||||||+++.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.55 E-value=1.7e-05 Score=63.90 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=22.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..++|+|++|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998775
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.51 E-value=2.4e-05 Score=63.32 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+|++|||||||++.|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999988887776
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=2.2e-05 Score=61.74 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.48 E-value=2.8e-05 Score=62.55 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|-.++|.|++||||||+++.|+--+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999987664
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.47 E-value=2.2e-05 Score=64.27 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||.|++|||||||++.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999988776
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.46 E-value=1.3e-05 Score=69.71 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEE
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i 141 (317)
+|++++++|+||+|||||+|.|.|-.. -..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-----~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-----hhhccccc
Confidence 588999999999999999999999765 45566653
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.45 E-value=3.2e-05 Score=62.36 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+++|.|++||||||+++.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998876
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.44 E-value=2.8e-05 Score=61.40 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhh
Q 021147 104 TSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~G 125 (317)
+++.|+|++|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999997754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=2e-05 Score=64.58 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|-++.|+|++||||||+++.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999988764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.40 E-value=3.6e-05 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++.|+||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998775
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=4.1e-05 Score=65.00 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.|.++.|+||||||||||.+.|.-.++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998876543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.37 E-value=3.7e-05 Score=61.50 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+|++||||||+++.|+--+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999987654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.34 E-value=5.5e-05 Score=65.57 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=62.1
Q ss_pred ceeeEecccCCCCccccccee--------eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCCh
Q 021147 147 DGTYFLQEYTIPRGVRHGELV--------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 218 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~--------~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~ 218 (317)
.+||+||++.++|++++.++. ....+..+.++++.++++.+++-.. +.+.++.+.|
T Consensus 84 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------------~~~~~p~~LS 147 (230)
T d1l2ta_ 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------------FANHKPNQLS 147 (230)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------------GTTCCGGGSC
T ss_pred eEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh----------------hhcCChhhCC
Confidence 489999999999888887642 1234566667777777776665221 1234567789
Q ss_pred HHHHHHHHHHHHcCC-Cccc-------------------------CCCCCCEEEEecc
Q 021147 219 VEKQYNQIVATTFNC-PYLS-------------------------FRDDKPVVVVTHG 250 (317)
Q Consensus 219 ~~~~~~~~~a~~~~l-~~~~-------------------------l~~~~~~~i~~hg 250 (317)
++++|++++|+++.. |... ...|.+++++||.
T Consensus 148 GGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd 205 (230)
T d1l2ta_ 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (230)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCC
Confidence 999999999999877 3110 2458899999996
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=5.3e-05 Score=62.70 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=7.6e-05 Score=62.66 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||.|++||||||+.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999877764
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=8.6e-05 Score=61.48 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+||||||||||++.|..-++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.16 E-value=8.6e-05 Score=61.30 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|+||+||||||+++.|+--+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC
Confidence 5899999999999999999987654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.13 E-value=0.00012 Score=60.21 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++|-.++|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999999544
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.10 E-value=0.0001 Score=59.76 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+.|+|++||||||+.+.|+--+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467999999999999999987664
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00013 Score=60.24 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999998886543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00012 Score=59.05 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+++|+|++|||||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.06 E-value=0.00012 Score=60.87 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+||||||||||++.|.-.++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876543
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.06 E-value=9.7e-05 Score=61.22 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=25.6
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++++.++.|+||.||||||+++.|+--|.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56778999999999999999999987654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.0001 Score=61.02 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+-.+++|+||+||||||+++.|+--|.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999988764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.06 E-value=0.00011 Score=59.60 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.06 E-value=0.00013 Score=58.99 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|+|++||||||+.++|+-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999988875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=0.0001 Score=60.28 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+||+|++++|||||++.|.|--
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00016 Score=58.35 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
+++|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.00016 Score=59.88 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+++|+|++|||||||++.|.+--
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.00 E-value=0.00013 Score=59.02 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998885
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.99 E-value=0.00016 Score=58.39 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|+|++||||||+.++|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66889999999999999998775
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.98 E-value=0.00018 Score=58.55 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
+++|+|.+|+|||||++.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.98 E-value=0.00018 Score=56.78 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++|||.+|||||||++.+.+--
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999887753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00022 Score=57.96 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=24.0
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
|++|+++.|.||+|||||||+--++.-
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998766644
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.97 E-value=0.00019 Score=56.40 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|||||||++.+.+--
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999887643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.94 E-value=0.00019 Score=60.64 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+|+.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999976543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00021 Score=58.83 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|+||.||||||.++.|+--+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.92 E-value=0.00016 Score=59.48 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|+||+||||||+++.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 477999999999999999987764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00021 Score=64.35 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 799999999999999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.00022 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.91 E-value=0.00015 Score=58.20 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-.++|||++|||||||++.|.+=.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.90 E-value=0.00022 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|+||.||||||+++.|+--+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999977664
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00021 Score=56.66 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
=.++|+|++|||||||++.|.|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.88 E-value=0.00022 Score=58.76 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++++|.+|||||||++.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997664
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.86 E-value=0.00016 Score=58.81 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+||+|.+|+|||||++.|.|--
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.84 E-value=0.00025 Score=59.35 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|-||+||||||++++|+--+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999999998765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00029 Score=58.58 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|.||+||||||+.+.|+--|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999987765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.81 E-value=0.00033 Score=57.35 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
++-+++.++|++||||||+++-+.-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557999999999999999987753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.79 E-value=0.00029 Score=57.29 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.+||+|.+|+|||||++.|.|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.78 E-value=0.00032 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|+||.||||||+++.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 377999999999999999998775
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.77 E-value=0.00029 Score=57.90 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++||.|++||||||+++.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999998643
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.73 E-value=0.00029 Score=57.94 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.6
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+++|-|+.||||||++++|...+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.73 E-value=0.00027 Score=60.58 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|||||||++.|++-+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999999875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.71 E-value=0.00036 Score=63.11 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=30.0
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEEC
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~ 142 (317)
+..+..+.|+|+.|||||||++.|.+.++ |..=-|.+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~-----~~~rivtiE 200 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIE 200 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc-----cccceeecc
Confidence 34456689999999999999999999998 655445543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0002 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|++++|||||++.|.+--
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00043 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|+||.||||||..+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999987664
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.63 E-value=0.00048 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 368999999999999999986664
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.62 E-value=0.00048 Score=54.87 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=25.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+|++|||||||++.|.+-.. ....|+.|.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~ 36 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGF 36 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-CcccceEee
Confidence 378999999999999999988643 223455553
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.00067 Score=58.48 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=23.0
Q ss_pred eeeeeEecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 94 ~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
+|++++ +.+.++.|.|||.|||||++|.+.
T Consensus 33 Ndi~l~-~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 33 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence 444443 234789999999999999999774
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.00029 Score=61.13 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=82.5
Q ss_pred CceeeEecccCCCCccccccee-----eccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHHhhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~~~~~~~~~~~~~ 220 (317)
..++|+||.+.+++++++.++. +...+..+.++.+..+++.+++-. ..+..+...+++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~lSgG 137 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------------KIKDRVSTYSKG 137 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-----------------GGGSBGGGCCHH
T ss_pred hhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH-----------------HHhhhhhhCCHH
Confidence 4589999999999888777643 234455555555554444444311 012334556788
Q ss_pred HHHHHHHHHHcCC-Cccc------------------------CCCCCCEEEEec--cchhcCcHHHHHhhcccceecccc
Q 021147 221 KQYNQIVATTFNC-PYLS------------------------FRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 273 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~------------------------l~~~~~~~i~~h--g~~~~LSgG~~qRl~iaral~~~p 273 (317)
++|+..+|+++.. |... ..+|.+++++|| .++..+|+..-. +.-|+.+..++
T Consensus 138 ~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~v-l~~G~iv~~g~ 216 (238)
T d1vpla_ 138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIAL-IHNGTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEE-EETTEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcC
Confidence 8888888887766 2110 345899999999 577889998877 88899999998
Q ss_pred ceeeccCCCC
Q 021147 274 AKQIFDIPES 283 (317)
Q Consensus 274 ~ilIlDEPts 283 (317)
+--|.+.++.
T Consensus 217 ~~el~~~~~~ 226 (238)
T d1vpla_ 217 VEELKERYKA 226 (238)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhccCC
Confidence 8888888776
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.59 E-value=0.0028 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...++.++||+|+||||++-=|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999998866666654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00036 Score=58.85 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++|-|+-||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998774
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.00017 Score=57.24 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|+|||||++.|.|--
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999863
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.55 E-value=0.00056 Score=57.79 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=30.9
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~~ 145 (317)
=++|-++-|.|.||||||||++.|.-.+... ...-.+.+||..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~---~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 63 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHh---cCceEEEEcchH
Confidence 3678899999999999999999987544200 112347788764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.51 E-value=0.00055 Score=59.61 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++|+|.+|+|||||+|.|.|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.48 E-value=0.00092 Score=56.62 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.+++++||+||||||++-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999998755566555
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.00075 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|+||||++++|+.-+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.46 E-value=0.00066 Score=54.34 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|.+|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00062 Score=60.86 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.++||+|||||+|+|+|+..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4566999999999999999999875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00065 Score=56.77 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
++||+|+.||||||+++++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.45 E-value=0.001 Score=53.07 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|++|||||||++.+.+---+....|+-|
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~ 36 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG 36 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCcccccce
Confidence 378999999999999997765432222335544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.43 E-value=0.00075 Score=55.83 Aligned_cols=24 Identities=42% Similarity=0.739 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|+||.||||||+.+.|+--|.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997664
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.00079 Score=55.78 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.00081 Score=56.66 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|-+++|-|+-||||||++++|.--+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999988765
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00081 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.9
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
+++|+++.|.|++|||||||+.-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8899999999999999999997654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.00081 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|+||.||||||+++.|+--+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999987664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00086 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|.+++|-|+-||||||+++.|.-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998664
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.38 E-value=0.00073 Score=55.10 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+||||..+||||||++.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.35 E-value=0.0011 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=21.8
Q ss_pred eeEecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 97 sl~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
|+.+. ++++.|.|||.|||||++|.+.
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred eEEeC-CcEEEEECCCccccchhhhhhH
Confidence 44444 3689999999999999999664
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.0016 Score=52.17 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+|.+|||||||++.+.+-.-+....|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 4889999999999999876542211222366554
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0018 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.27 E-value=0.00095 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||+|+|||||+++|+..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999999998654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.002 Score=51.43 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=22.4
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
++|+|.+|+|||||++.+.+---+....|+-|.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 789999999999999876552211222366553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.26 E-value=0.0011 Score=56.24 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.++.|.||+|+|||||++.++.-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 567899999999999999998765543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.26 E-value=0.00043 Score=61.70 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++||.|+|||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999998886
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.25 E-value=0.0015 Score=52.32 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
++++|++|||||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 889999999999999977643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0011 Score=53.14 Aligned_cols=20 Identities=35% Similarity=0.765 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|+|++|||||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998765
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0019 Score=51.47 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
++|+|++|||||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 889999999999999877654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.0015 Score=51.92 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0012 Score=55.78 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.+.||+||||||++++|+.-+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367999999999999999999887
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.24 E-value=0.00082 Score=56.74 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.8
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRI 123 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL 123 (317)
+++|+++.|.||+|||||||+--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998633
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0012 Score=55.60 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.0
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
=|++|+++.|.|++|||||||+--++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999999976654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0013 Score=55.48 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+|.+++|-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999987765
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.17 E-value=0.00059 Score=59.12 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=75.1
Q ss_pred CceeeEecccCCCCcccccceee----ccCChHHHHHHHHHhhhhccccccccccccchhhHHHHHH-hhhccCCCChHH
Q 021147 146 GDGTYFLQEYTIPRGVRHGELVI----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA-VLKSMEGDSDVE 220 (317)
Q Consensus 146 ~~~~~~~Q~~~l~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~-~~~~~~~~~~~~ 220 (317)
..++|+||++.+|+++++.++.. ...+....++...+++..+ .++. ..+..+...|++
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~LSGG 143 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF-----------------PRLKERLKQLGGTLSGG 143 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC-----------------HHHHTTTTSBSSSSCHH
T ss_pred hcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----------------hChHHHHhCchhhCCHH
Confidence 35789999999998888776421 1122233333322221111 1111 234556788999
Q ss_pred HHHHHHHHHHcCC-Cccc------------------------CCCCCCEEEEecc--chhcCcHHHHHhhcccceecccc
Q 021147 221 KQYNQIVATTFNC-PYLS------------------------FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPP 273 (317)
Q Consensus 221 ~~~~~~~a~~~~l-~~~~------------------------l~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~p 273 (317)
++|+..+|+++.. |... ..+|.+++++||. .+..+|+.... +.-||.+..++
T Consensus 144 ~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~v-l~~G~iv~~g~ 222 (240)
T d1ji0a_ 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYV-LETGQIVLEGK 222 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEE-EETTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcC
Confidence 9999999998876 3110 3458999999994 66677777766 77788888777
Q ss_pred ceeeccCC
Q 021147 274 AKQIFDIP 281 (317)
Q Consensus 274 ~ilIlDEP 281 (317)
+-.++++|
T Consensus 223 ~~el~~~~ 230 (240)
T d1ji0a_ 223 ASELLDNE 230 (240)
T ss_dssp HHHHHTCH
T ss_pred HHHHhcCH
Confidence 76666654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0014 Score=57.05 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||+|||||+|++.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 4578999999999999999998876
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0025 Score=50.77 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=23.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+|.+|+|||||++.+.+-..+....|+-|.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 38 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED 38 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceee
Confidence 3789999999999999877654322222355443
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0012 Score=55.42 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.|.||+|+|||||+++++.-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.13 E-value=0.0011 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++++|++|||||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988663
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.12 E-value=0.0012 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0013 Score=59.56 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-++||+|+.|||||||+..|...+.
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999986654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.11 E-value=0.0016 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.7
Q ss_pred EecCCCEEEEEcCCCChHHHHHH-HHh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVN-RIS 124 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlk-lL~ 124 (317)
=+++|+++.|.|++|||||||+- ++.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 38999999999999999999985 444
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0014 Score=52.89 Aligned_cols=20 Identities=45% Similarity=0.878 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
+++||++|||||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999987655
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.07 E-value=0.0016 Score=54.83 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.4
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
|++|.++.|.|++|||||||+.-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998655444
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.0012 Score=61.14 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+||+|.+|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.05 E-value=0.0034 Score=50.84 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|.+|||||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0015 Score=51.96 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
++++|.+|||||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999976653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0016 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++||+|..||||||.++.+.-+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999988643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.00 E-value=0.0016 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.8
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
+++|+++.|.|++|+|||||+--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986554
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0014 Score=55.64 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+-.++++|||+|+||||.+-=|+-.+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999988644444443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0019 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=20.1
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++++|||+|+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999998755565554
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0032 Score=50.62 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+|.+|+|||||++.+.+-.-+....|+-|.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~ 37 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE 37 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee
Confidence 3789999999999999776654322223355443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0017 Score=52.17 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
+++||++|||||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999876543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.95 E-value=0.0027 Score=52.36 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=25.2
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
|+..-+.+ .|.-+.|.|+||+|||||+-.+.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 55566666 78889999999999999996654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0017 Score=52.66 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|+|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999987764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0023 Score=51.34 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|++|||||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999976554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0019 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 78999999999999999888643
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.89 E-value=0.003 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=22.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999886
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0031 Score=50.45 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
++|+|.+|||||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0042 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++|+|..|||||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.85 E-value=0.0019 Score=55.75 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+.|.||+|||||+|++.|+.-..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 477999999999999999998765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0025 Score=51.84 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.+.|+|.+|+|||||++.+.-... ..||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~---~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHG---QDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS---CCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCeee
Confidence 378999999999999999843322 238888
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.83 E-value=0.0024 Score=55.13 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=28.0
Q ss_pred ceeeeeEecCCCEEEEEcCCCChHHHHHHHHhh
Q 021147 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 93 L~~isl~I~~Ge~vaIvG~SGsGKSTLlklL~G 125 (317)
|+++..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 666655589999999999999999999877664
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0035 Score=49.90 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|+|.+|||||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0021 Score=56.97 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998775544
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0034 Score=50.04 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
.++|+|.+|+|||||++.+.+-.-++...|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 478999999999999986554322222236655
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0042 Score=49.60 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=22.7
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
++|||++|+|||||++-+.+-.-++...|+-|
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 78999999999999987765322222336655
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.82 E-value=0.0019 Score=56.38 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=24.9
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++..-+.|.||+|||||+|++.|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44455688999999999999999999876
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.0028 Score=51.94 Aligned_cols=32 Identities=41% Similarity=0.528 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
++|+|+.|||||||++.+.+--.+....|+.|
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~ 40 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 40 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCTTCCCSSC
T ss_pred EEEECCCCcCHHHHHHHHhhCCCCCCcCCccc
Confidence 88999999999999997765332222335544
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.79 E-value=0.0025 Score=50.82 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|+|.+|+|||||++.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.0023 Score=50.65 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|..|||||||++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.75 E-value=0.0024 Score=54.08 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-++||+|..+||||||++.|.+-.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCccHHHHHHHHHhhc
Confidence 369999999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.005 Score=49.08 Aligned_cols=34 Identities=35% Similarity=0.326 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++++|.+|+|||||++.+..---+....|+.|.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~ 41 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 41 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCccccccccc
Confidence 3689999999999999877643322222355444
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.0019 Score=52.35 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.1
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...++|.+++|.|+=|||||||+|.++.-+.
T Consensus 28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 3457899999999999999999998887765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0024 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||+||||||++++++.-+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67999999999999999987654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.70 E-value=0.0015 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.++++|++|||||||++.+.+-.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999886543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0028 Score=50.41 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999776643
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.65 E-value=0.0024 Score=59.99 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+.+|||+|||||-|+|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999999886
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.0026 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||+|||||+|++.|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 67999999999999999998765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.65 E-value=0.0028 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.61 E-value=0.006 Score=48.75 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|.+|||||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999997765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.60 E-value=0.0026 Score=53.87 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=16.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.-.++++|||+|+||||++-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999998755555554
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0029 Score=50.83 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++|+|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 78999999999999999887643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0032 Score=50.70 Aligned_cols=21 Identities=48% Similarity=0.749 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhhc
Q 021147 106 LLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl 126 (317)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0032 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
.++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999976654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.003 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
.++|+|.+|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.47 E-value=0.0064 Score=49.17 Aligned_cols=32 Identities=16% Similarity=0.485 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHH-hhcccCCCCCCcCcE
Q 021147 106 LLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQ 138 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL-~Gl~~p~~~~p~~G~ 138 (317)
++|+|.+|+|||||++.+ .|-++ ....|+-+.
T Consensus 5 ivliG~~~vGKTsli~r~~~~~f~-~~~~~t~~~ 37 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFE 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEE
T ss_pred EEEECCCCcCHHHHHHHHHhCCCC-CccCCceee
Confidence 689999999999999644 44432 223355443
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0032 Score=50.43 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999997654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.46 E-value=0.0072 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0028 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.|.||.|+||||++++++.-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.004 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||+|||||+|++.++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 77999999999999999999765
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.39 E-value=0.0062 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.3
Q ss_pred ecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
--.|.-+.|.|+||+|||||+-.+.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3356789999999999999986544
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.0037 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||.|+||||++++|+.-+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67999999999999999998653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0068 Score=52.84 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=31.3
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
=|++|.++-|.||+|||||||+-.++..... +..--+++|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~----~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEEccc
Confidence 5789999999999999999998655555441 44444666665
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0075 Score=47.83 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|||.+|+|||||++.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999987654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.0067 Score=49.38 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.++|+|.+|+|||||++.+.+-.-+....|+-|.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~ 38 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD 38 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee
Confidence 3789999999999999665443222223355553
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.33 E-value=0.0045 Score=49.72 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~ 138 (317)
.+.|+|.+|+|||||++-+..-.- |+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-----~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-----AGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-----CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-----CCccE
Confidence 378999999999999998776655 55554
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0039 Score=55.24 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=29.4
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.=+.|.+|+..+|+|++|+|||||+..|+.-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 3446889999999999999999999999887654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.32 E-value=0.0029 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+.|+|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.0025 Score=51.22 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=8.6
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|+|..|||||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999976654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0026 Score=51.03 Aligned_cols=20 Identities=40% Similarity=0.755 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.23 E-value=0.0027 Score=55.14 Aligned_cols=112 Identities=7% Similarity=0.056 Sum_probs=69.4
Q ss_pred ceeeEecccCCCCcccccceee-cc-----------------CChHHHHHHHHHhhhhccccccccccccchhhHHHHHH
Q 021147 147 DGTYFLQEYTIPRGVRHGELVI-RR-----------------SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 208 (317)
Q Consensus 147 ~~~~~~Q~~~l~~~~~~~~~~~-~~-----------------~~~~~~r~~~~~~~~~ig~v~Q~~~~~~~~~tv~eni~ 208 (317)
.++|+||++.+++++++.++.. .. .+.+...+++.++++.+++-.
T Consensus 80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------- 142 (254)
T d1g6ha_ 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH----------------- 142 (254)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------------
T ss_pred cCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-----------------
Confidence 4789999998888777766431 10 011222233333333333211
Q ss_pred hhhccCCCChHHHHHHHHHHHHcCC-Cccc------------------------CCCCCCEEEEec--cchhcCcHHHHH
Q 021147 209 VLKSMEGDSDVEKQYNQIVATTFNC-PYLS------------------------FRDDKPVVVVTH--GDLLSLTDRARI 261 (317)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~a~~~~l-~~~~------------------------l~~~~~~~i~~h--g~~~~LSgG~~q 261 (317)
..+..+...|++++|++.+|+++.. |... ...|.+++++|| .++.++|+..-.
T Consensus 143 ~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~v 222 (254)
T d1g6ha_ 143 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV 222 (254)
T ss_dssp GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEE
Confidence 1123445678899999998888766 2110 356899999999 477788888777
Q ss_pred hhcccceecccccee
Q 021147 262 RTYLGELLGIPPAKQ 276 (317)
Q Consensus 262 Rl~iaral~~~p~il 276 (317)
+.-|+.++.+++-.
T Consensus 223 -m~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 -MFNGQIIAEGRGEE 236 (254)
T ss_dssp -EETTEEEEEEESHH
T ss_pred -EeCCEEEEEecHHH
Confidence 77888887766543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0053 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.3
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.+|+++.|.|++|+|||||+--|+--
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999999999766543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0047 Score=49.24 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHH-hhcc
Q 021147 106 LLLIGPKGSGKSSLVNRI-SKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL-~Gl~ 127 (317)
++|+|+.|+|||||++.+ .|-+
T Consensus 9 i~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 899999999999999865 4443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.17 E-value=0.0046 Score=55.55 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.2
Q ss_pred CEEEEEcCCCChHHHHHHHHhhcc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
-++||.|+.|||||||+..|...+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHH
Confidence 479999999999999999888654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.15 E-value=0.0056 Score=56.49 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++-.+.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3556799999999999999999988765
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.0062 Score=52.47 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=55.6
Q ss_pred cCCCChHHHHHHHHHHHHcCC-C-cc----------------------cCCCCCCEEEEecc-chhcCcHHHHHhhcccc
Q 021147 213 MEGDSDVEKQYNQIVATTFNC-P-YL----------------------SFRDDKPVVVVTHG-DLLSLTDRARIRTYLGE 267 (317)
Q Consensus 213 ~~~~~~~~~~~~~~~a~~~~l-~-~~----------------------~l~~~~~~~i~~hg-~~~~LSgG~~qRl~iar 267 (317)
.+...+++++|+.++|+++-. | +. .+..+.+++++||. .....++.... +.-||
T Consensus 136 ~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~v-l~~G~ 214 (241)
T d2pmka1 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIV-MEKGK 214 (241)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEE-EETTE
T ss_pred CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEE-EECCE
Confidence 456789999999999999876 2 11 03457899999995 33456776666 78899
Q ss_pred eeccccceeeccCCCCCCHHH
Q 021147 268 LLGIPPAKQIFDIPESSDPEN 288 (317)
Q Consensus 268 al~~~p~ilIlDEPtsLD~~t 288 (317)
.+..++.--++.+|.+ .+.
T Consensus 215 Iv~~G~~~ell~~~~~--~y~ 233 (241)
T d2pmka1 215 IVEQGKHKELLSEPES--LYS 233 (241)
T ss_dssp EEEEECHHHHHHSTTC--HHH
T ss_pred EEEECCHHHHHhCCCC--HHH
Confidence 9999999999999987 553
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0049 Score=50.07 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999976543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.09 E-value=0.0056 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 021147 105 SLLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~G 125 (317)
++||.|+-||||||.++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999953
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.05 E-value=0.0037 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 356779999999999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0066 Score=49.11 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
.++++|.+|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999866553
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.95 E-value=0.0064 Score=55.47 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=28.4
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-.++++..+.+.||.|+||||+++.|++.+.
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred hCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3568889999999999999999999999987
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.94 E-value=0.0083 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.5
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
-.-.|.-+.|.|+||+|||||+-.+.
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 34457889999999999999885443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0059 Score=54.47 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.++||+|+|||.|++.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 578999999999999999999876
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.85 E-value=0.0081 Score=50.40 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHh-hcccCCCCCCcCc
Q 021147 105 SLLLIGPKGSGKSSLVNRIS-KVFENDKFASERA 137 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~-Gl~~p~~~~p~~G 137 (317)
.+.|+|.+|+|||||++-+. +-+. ||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~-----pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVV-----LTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-----CCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC-----CCCC
Confidence 47899999999999998764 3233 7666
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.72 E-value=0.0037 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.9
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..+.|+|+.|+|||||+|.+.++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCC
Confidence 4578999999999999999999986
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.68 E-value=0.0064 Score=53.09 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+++||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999975
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.59 E-value=0.0072 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+||||-..||||||+++|+|.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999999874
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.58 E-value=0.0076 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
.+++||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.44 E-value=0.0097 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.42 E-value=0.0088 Score=54.51 Aligned_cols=29 Identities=38% Similarity=0.809 Sum_probs=23.4
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+++++. +.++||+|||||-|+|.|+.+..
T Consensus 65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp TCCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 344444 55889999999999999998875
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.0088 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+++|+||-++|||||++.|.|-..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999998653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.32 E-value=0.015 Score=50.77 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=30.2
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcE-EEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ-VTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~-I~i~g~ 144 (317)
=++.|.++-|.||+|||||||+-.++.... -..|. |++|..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q-----~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH-----HTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh-----cCCCEEEEEECC
Confidence 688999999999999999999755555544 23344 555654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.22 E-value=0.01 Score=52.23 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=29.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccC--C-----CCCCcCcEEEECc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEN--D-----KFASERAQVTYNS 143 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p--~-----~~~p~~G~I~i~g 143 (317)
.+||||...||||||+++|++--.+ . ...|.-|.|.+.+
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 4999999999999999999986321 1 1246678887765
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.01 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++|=|.=||||||++++|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997664
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.05 E-value=0.016 Score=50.56 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=31.2
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
=|+.|.++-|-||+|||||||+-.++..... +..--+++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk----~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQK----AGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHh----CCCEEEEEECC
Confidence 5789999999999999999999777776541 32224555554
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.97 E-value=0.014 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
..+++|+|..|.|||||++.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.90 E-value=0.015 Score=50.98 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=27.3
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl 126 (317)
|.=+.+-+|+..+|+|++|+|||||+..|+.-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999997776654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.015 Score=53.00 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=26.0
Q ss_pred CEEEEEcCCCChHHHHHH-HHhhcccCCCCCCcCcEEEECcc
Q 021147 104 TSLLLIGPKGSGKSSLVN-RISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlk-lL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
..+.|+|++|||||++++ +|..++. ...+-|.+|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~-----~g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL-----RGDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH-----TTCEEEEEEET
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh-----CCCCEEEEeCC
Confidence 468999999999999986 5556655 33455666654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.014 Score=46.81 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=23.0
Q ss_pred EEEEcCCCChHHHHHHHHhhcccCCCCCCcCc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G 137 (317)
+.|+|.+|+|||||++.+..-.. ...||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~--~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHG--SGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTS--SCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCC--CCCceee
Confidence 68999999999999988755533 2347766
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.72 E-value=0.014 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 021147 105 SLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~ 124 (317)
.+||+|+.|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999884
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.69 E-value=0.016 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
-+||+|.-+||||||+..|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3899999999999999998644
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.68 E-value=0.03 Score=48.49 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=29.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccC------CCCCCcCcEEEECc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFEN------DKFASERAQVTYNS 143 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p------~~~~p~~G~I~i~g 143 (317)
.+||||-..+|||||+++|++--.+ ....|.-|.|.+.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 5899999999999999999976431 12346778887654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.30 E-value=0.021 Score=51.12 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=23.8
Q ss_pred eEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 98 l~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...++| ++.++||+|||||.|++.|++-..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 345554 455689999999999999999864
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.20 E-value=0.019 Score=50.22 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 021147 105 SLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~ 124 (317)
-+||+|..|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999998884
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.08 E-value=0.023 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHhhccc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.|.||+|||||-|+++++--..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999987764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.025 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 467889999999999999988765
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.018 Score=48.41 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKV 126 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl 126 (317)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999887663
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.031 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|.||.|+||||+++.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 488999999999999999998764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.90 E-value=0.023 Score=50.56 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhcccCCCCCCcCcEEEECcc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~p~~~~p~~G~I~i~g~ 144 (317)
++.++||+|+|||.|++.|+-.+-. ....-+.++..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~----~~~~~~~~~~~ 90 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFD----TEEAMIRIDMT 90 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHS----SGGGEEEECTT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcC----CCcceEEEecc
Confidence 5779999999999999999998630 23344566553
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.62 E-value=0.03 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+||+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998664
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=92.41 E-value=0.0049 Score=53.11 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHHHHHHcCC-C-cc----------------------cCCCCCCEEEEecc-chhcCcHHHHHhhcccce
Q 021147 214 EGDSDVEKQYNQIVATTFNC-P-YL----------------------SFRDDKPVVVVTHG-DLLSLTDRARIRTYLGEL 268 (317)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~l-~-~~----------------------~l~~~~~~~i~~hg-~~~~LSgG~~qRl~iara 268 (317)
+...+++++|+.++|+++-. | +. .+..+.+++++||. .....++.... +.-|+.
T Consensus 137 g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~v-l~~G~i 215 (242)
T d1mv5a_ 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYF-IEKGQI 215 (242)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEE-EETTEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEE-EECCEE
Confidence 45679999999999998755 2 11 03457899999995 11223444433 555666
Q ss_pred eccccceeec
Q 021147 269 LGIPPAKQIF 278 (317)
Q Consensus 269 l~~~p~ilIl 278 (317)
+..++.-.++
T Consensus 216 v~~G~~~eLl 225 (242)
T d1mv5a_ 216 TGSGKHNELV 225 (242)
T ss_dssp CCCSCHHHHH
T ss_pred EEECCHHHHH
Confidence 6666555444
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.031 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHhhccc
Q 021147 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 104 e~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.-+.||||+|+|||+++.-++..+.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHH
Confidence 3467999999999999999988765
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=92.04 E-value=0.038 Score=48.27 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.0
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
|.=+.|-+|+..+|+|++|+|||+|+..+.--..
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 4456899999999999999999999986554443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.038 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
-+.||||+|.|||+++.-|+..+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 467999999999999999988765
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.58 E-value=0.028 Score=42.03 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.2
Q ss_pred ecCCCEEEEEcCCCChHHHHH
Q 021147 100 VPKTTSLLLIGPKGSGKSSLV 120 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKSTLl 120 (317)
+++|+.+.|..|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 467999999999999999655
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.45 E-value=0.047 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHhhcc
Q 021147 106 LLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+||+|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998754
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.30 E-value=0.092 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+.|=|+=||||||+++.|..-+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 477889999999999999999886
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.07 E-value=0.04 Score=48.37 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=25.7
Q ss_pred eeeeEecCCCEEEEEcCCCChHHHHHHHHh
Q 021147 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 95 ~isl~I~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
|.=+.+-+|+..+|+|++|+|||||+.-+.
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 455789999999999999999999986444
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.97 E-value=0.064 Score=41.04 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.2
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+.|=++-+.|-||||||||+++|.--+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l 30 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTF 30 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999884444
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.16 E-value=0.089 Score=43.80 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.6
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.+++-.++.|.||.++|||+++.+|+.++.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 356678999999999999999999999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.018 Score=49.68 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred ccCCCChHHHHHHHHHHHHcCC-C-ccc----------------------C--CCCCCEEEEecc-chhcCcHHHHHhhc
Q 021147 212 SMEGDSDVEKQYNQIVATTFNC-P-YLS----------------------F--RDDKPVVVVTHG-DLLSLTDRARIRTY 264 (317)
Q Consensus 212 ~~~~~~~~~~~~~~~~a~~~~l-~-~~~----------------------l--~~~~~~~i~~hg-~~~~LSgG~~qRl~ 264 (317)
..+...|++++|+.++|+++-. | +.. + ..+.+++++||. .....++.... |.
T Consensus 147 ~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~v-l~ 225 (251)
T d1jj7a_ 147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILF-LE 225 (251)
T ss_dssp SSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEE-EE
T ss_pred ccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEE-EE
Confidence 3456789999999999999876 2 110 2 236889999995 22234555554 66
Q ss_pred ccceeccccceeeccCC
Q 021147 265 LGELLGIPPAKQIFDIP 281 (317)
Q Consensus 265 iaral~~~p~ilIlDEP 281 (317)
-|+.+..++.-.|+.++
T Consensus 226 ~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 226 GGAIREGGTHQQLMEKK 242 (251)
T ss_dssp TTEEEEEECHHHHHHHT
T ss_pred CCEEEEECCHHHHHhCC
Confidence 77777777666666543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.74 E-value=0.073 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478999999999999999987764
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.01 E-value=0.093 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.4
Q ss_pred cCCCEEEEEcCCCChHHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLVN 121 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlk 121 (317)
+.|++..+-|-||+|||||-.
T Consensus 12 ~~~~~alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLST 32 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHHC
T ss_pred CCCCEEEEEccCCCCccccee
Confidence 468999999999999999863
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=88.95 E-value=0.11 Score=44.78 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+-.+++||-..+|||||++.|.|--.
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 34599999999999999999999754
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=88.93 E-value=0.097 Score=51.24 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+..+.+.|-|+||||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887765
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.90 E-value=0.098 Score=51.46 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...+.+.|-|+||||||.-.|.|+..+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999988764
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.88 E-value=0.097 Score=43.59 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 021147 105 SLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~ 124 (317)
-+|++|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 38999999999999998774
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.77 E-value=0.12 Score=44.55 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.3
Q ss_pred EecCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 99 ~I~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
..++--++.|.||.++||||++++|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445667899999999999999999999984
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.75 E-value=0.073 Score=40.30 Aligned_cols=32 Identities=25% Similarity=0.041 Sum_probs=22.7
Q ss_pred ceeccccceeeccCCCCCCHHHHHHHHHHHHH
Q 021147 267 ELLGIPPAKQIFDIPESSDPENELIIVDMLRY 298 (317)
Q Consensus 267 ral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~ 298 (317)
+....+-+++|+||.-.+|..+...+..+++.
T Consensus 89 ~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~ 120 (136)
T d1a1va1 89 GCSGGAYDIIICDECHSTDATSILGIGTVLDQ 120 (136)
T ss_dssp GGGGCCCSEEEEETTTCCSHHHHHHHHHHHHH
T ss_pred chhhhcCCEEEEecccccCHHHHHHHHHHHHH
Confidence 33456779999999855888877666555554
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.67 E-value=0.097 Score=46.48 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.8
Q ss_pred CCCEEEEEcCCCChHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVN 121 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlk 121 (317)
.|++..+-|-||+|||||--
T Consensus 13 ~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TCCEEEEEECTTSCHHHHTC
T ss_pred CCCEEEEEccCCCCcccccc
Confidence 48899999999999999763
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=88.27 E-value=0.071 Score=45.76 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=45.9
Q ss_pred cCCCChHHHHHHHHHHHHcCC-C-cc----------------------cCCCCCCEEEEecc-chhcCcHHHHHhhcccc
Q 021147 213 MEGDSDVEKQYNQIVATTFNC-P-YL----------------------SFRDDKPVVVVTHG-DLLSLTDRARIRTYLGE 267 (317)
Q Consensus 213 ~~~~~~~~~~~~~~~a~~~~l-~-~~----------------------~l~~~~~~~i~~hg-~~~~LSgG~~qRl~iar 267 (317)
.+...|++++|+.++|+++-. | +. .+..+.+++++||. .....++.... |.-||
T Consensus 149 ~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~v-l~~G~ 227 (253)
T d3b60a1 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV-VEDGI 227 (253)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE-EETTE
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEE-EECCE
Confidence 456679999999999998755 2 11 03457899999995 22345665554 66788
Q ss_pred eeccccceeeccC
Q 021147 268 LLGIPPAKQIFDI 280 (317)
Q Consensus 268 al~~~p~ilIlDE 280 (317)
.+..+++-.|+.+
T Consensus 228 Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 228 IVERGTHSELLAQ 240 (253)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEECCHHHHHhC
Confidence 8887777666644
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=88.23 E-value=0.065 Score=45.82 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=22.4
Q ss_pred ecCCCEEEEEcCCCChHHH--HHHHHhhccc
Q 021147 100 VPKTTSLLLIGPKGSGKSS--LVNRISKVFE 128 (317)
Q Consensus 100 I~~Ge~vaIvG~SGsGKST--LlklL~Gl~~ 128 (317)
+.+|+.+.|.+|+|||||+ |..++....+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~ 36 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK 36 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999997 4455555544
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=88.23 E-value=0.03 Score=48.34 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHHHHHHcCC-C-cc----------------------cCCCCCCEEEEecc-chhcCcHHHHHhhcccce
Q 021147 214 EGDSDVEKQYNQIVATTFNC-P-YL----------------------SFRDDKPVVVVTHG-DLLSLTDRARIRTYLGEL 268 (317)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~l-~-~~----------------------~l~~~~~~~i~~hg-~~~~LSgG~~qRl~iara 268 (317)
+...+++++|+.++|+++-. | +. .+..+.+++++||. .....++.... |.-|+.
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~-l~~G~i 230 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV-IENGHI 230 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEE-EETTEE
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-EECCEE
Confidence 35578999999999998754 2 11 03457889999995 22345665555 667788
Q ss_pred eccccceeeccCCC
Q 021147 269 LGIPPAKQIFDIPE 282 (317)
Q Consensus 269 l~~~p~ilIlDEPt 282 (317)
+..++.-.|+..+.
T Consensus 231 v~~G~~~eLl~~~~ 244 (255)
T d2hyda1 231 VETGTHRELIAKQG 244 (255)
T ss_dssp EEEECHHHHHHTTS
T ss_pred EEECCHHHHHhCCc
Confidence 77777776666543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.13 E-value=0.13 Score=42.10 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+..+.+.||+||||||+++.++..+.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999999998764
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.99 E-value=0.13 Score=42.96 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 021147 106 LLLIGPKGSGKSSLVNRISK 125 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~G 125 (317)
++++|.-.+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999943
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.95 E-value=0.11 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhccc
Q 021147 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
.++|=|+=||||||+++.|.-.+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998775
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=87.78 E-value=0.13 Score=50.57 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhcc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~ 127 (317)
+..+.+.|-|+||||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999987776
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.71 E-value=0.11 Score=44.80 Aligned_cols=16 Identities=38% Similarity=0.744 Sum_probs=13.4
Q ss_pred EEEEEcCCCChHHHHH
Q 021147 105 SLLLIGPKGSGKSSLV 120 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLl 120 (317)
.+.|.|+.||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3678999999999765
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.54 E-value=0.14 Score=45.54 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCCChHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVN 121 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlk 121 (317)
.|++..+-|-||+|||||--
T Consensus 13 ~gd~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp TCCEEEEECCTTSSHHHHHC
T ss_pred CCCEEEEEccCCCCccccee
Confidence 68889999999999999983
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=87.47 E-value=0.14 Score=43.48 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
+.-+.|.|+.|+||++++++|...-.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 44578999999999999999987554
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=87.41 E-value=0.13 Score=51.19 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...+.+.|-|+||||||+-.|.|+..+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999998887763
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.26 E-value=0.1 Score=43.39 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHh
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~ 124 (317)
-.|+-+.|++|+|||||+..-+.+
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 367888999999999998654443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.06 E-value=0.14 Score=43.60 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.7
Q ss_pred EEEEEcCCCChHHHH-HHHHhhcc
Q 021147 105 SLLLIGPKGSGKSSL-VNRISKVF 127 (317)
Q Consensus 105 ~vaIvG~SGsGKSTL-lklL~Gl~ 127 (317)
-+.|+|+-||||||+ +..+..++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHH
Confidence 467999999999975 45444443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.01 E-value=0.11 Score=42.13 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.6
Q ss_pred cCCCEEEEEcCCCChHHHHH
Q 021147 101 PKTTSLLLIGPKGSGKSSLV 120 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLl 120 (317)
..|.-+.|..|+|||||+.+
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 35677889999999999864
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.93 E-value=0.15 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 021147 105 SLLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 105 ~vaIvG~SGsGKSTLlklL~ 124 (317)
-++|+|..++|||||+..|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998774
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.81 E-value=0.12 Score=47.03 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=24.1
Q ss_pred hhcccceeccccceeeccCCCCCCHHHHHHHHHHHHHH
Q 021147 262 RTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYC 299 (317)
Q Consensus 262 Rl~iaral~~~p~ilIlDEPtsLD~~t~~~l~~~l~~l 299 (317)
++.--.||.+.=..+-++||+. ..+...+......+
T Consensus 165 ~~e~d~al~rrF~~v~v~ep~~--~~~~~il~~~~~~~ 200 (387)
T d1qvra2 165 EIEKDPALERRFQPVYVDEPTV--EETISILRGLKEKY 200 (387)
T ss_dssp HHTTCTTTCSCCCCEEECCCCH--HHHHHHHHHHHHHH
T ss_pred HhcccHHHHHhcccccCCCCcH--HHHHHHHHHHHHHH
Confidence 3555677888778888899987 55555555444444
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=86.62 E-value=0.13 Score=51.00 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...+.+.|-|+||||||.-.|.|+..+.
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999988888764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=86.41 E-value=0.28 Score=43.98 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.9
Q ss_pred CCCEEEEEcCCCChHHHHHHH
Q 021147 102 KTTSLLLIGPKGSGKSSLVNR 122 (317)
Q Consensus 102 ~Ge~vaIvG~SGsGKSTLlkl 122 (317)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 357999999999999998843
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=86.03 E-value=0.18 Score=49.57 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCChHHHHHHHHhhccc
Q 021147 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 101 ~~Ge~vaIvG~SGsGKSTLlklL~Gl~~ 128 (317)
...+.+.|-|+||||||+-.|.++..+.
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999988763
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.85 E-value=0.16 Score=45.47 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHh
Q 021147 106 LLLIGPKGSGKSSLVNRIS 124 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL~ 124 (317)
+||+|.-|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999884
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.74 E-value=0.23 Score=38.49 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCChHHH-HHHHHhhccc
Q 021147 103 TTSLLLIGPKGSGKSS-LVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIvG~SGsGKST-LlklL~Gl~~ 128 (317)
|.+..|+||=.||||| |++.+.....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~ 28 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEY 28 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence 6678899999999999 7788766643
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.87 E-value=0.21 Score=42.28 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHH
Q 021147 106 LLLIGPKGSGKSSLVNRI 123 (317)
Q Consensus 106 vaIvG~SGsGKSTLlklL 123 (317)
++|+|.-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 899999999999999988
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=82.83 E-value=0.062 Score=45.46 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=32.0
Q ss_pred CCCCCEEEEecc--chhcCcHHHHHhhcccceeccccceeeccCC
Q 021147 239 RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 281 (317)
Q Consensus 239 ~~~~~~~i~~hg--~~~~LSgG~~qRl~iaral~~~p~ilIlDEP 281 (317)
..|.++++++|. .+..+|+.... +.-|+.++.+++-.|+.+|
T Consensus 180 ~~g~tii~vtHdl~~~~~~~dri~v-l~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 180 QQGLAIVMSSHDLNHTLRHAHRAWL-LKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp HTTCEEEECCCCHHHHHHHCSBCCB-EETTEECCCSBHHHHSCHH
T ss_pred hCCCEEEEEeCCHHHHHHHCCEEEE-EECCEEEEECCHHHHhCCh
Confidence 468899999995 66777877766 7788888887776666544
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.11 E-value=0.46 Score=38.46 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=22.5
Q ss_pred CCEEEEE-cCCCChHHHHHHHHhhccc
Q 021147 103 TTSLLLI-GPKGSGKSSLVNRISKVFE 128 (317)
Q Consensus 103 Ge~vaIv-G~SGsGKSTLlklL~Gl~~ 128 (317)
|.++++. +.-|+||||+.-.|+..+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la 28 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALG 28 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 5788899 7789999999998888876
|