Citrus Sinensis ID: 021160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Secondary Structure (PSIPRED)
cEEEEEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccEEEEccccccccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccccccccccccEEEEcccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHccccccccccccccccccEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccccEEEEccccccEEccccEEEEEEEEEccccccEEEccccccEEEEEcccEEccccccccccccHccccccccccccccEEEEEEccccEEEEEEccccEEEEccccccccccccccccccccccccEEEEccccccEEEEEEEEccccEEEEEEcccccEEEEEcccHHHHEEEcccccEEEEEcccccccEEEEccccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHEEccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MVLFNMLfdlrsdsatrlfycssfsenskqpmnsirlnaividprnpnyfavggsdeyaRVYDirkchwyspissdtpvdtfcprhligknnihitglaysntSELLISYNDELVYLFEknmglgpsplslspedlqkreepqvysghrnsqtvkgvnffgpndeyvmsgsdcghlfiwkkkggKLVRLMVGdrhvvnqlephphipmfatcgiektvklwapmptdfpplpdnAEKIMKANKqgredhsritltpDVIMHVLRLQRRQTLAYRErrynaadfesdeeegetyllgfsdsdassegggnqreciis
Flexible Loop (DISEMBL)
MVLFNMlfdlrsdsATRLFYCSSFsenskqpmnSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPqvysghrnsqtvkgvNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANkqgredhsritltpdvimhVLRLQRRQTLAYRERRynaadfesdeeeGETYLLGfsdsdassegggnqreciis
Low Complexity Region (SEG)
MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Disordered region (IsUnstruct)
**LFNMLFDLRSDSATRLFYCSSF*********SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM*******************************VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP**************************ITLTPDVIMHVLRLQRRQTLAYRERRY**************************************
Disordered Region (DISOPRED)
MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD**************************LTPDVIMHVLRL***********************************************C***
Disordered Region (DISEMBL)
MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDL************RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAA**********TYLLGFSDS****************
Disordered Region (DISPRO)
MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q5R448	597	DDB1- and CUL4-associated	yes	no	0.696	0.368	0.406	2e-43
Q8N7N5	591	DDB1- and CUL4-associated	yes	no	0.705	0.377	0.403	4e-43
Q6NRH1	601	DDB1- and CUL4-associated	N/A	no	0.705	0.371	0.407	4e-43
Q5TAQ9	597	DDB1- and CUL4-associated	yes	no	0.696	0.368	0.402	8e-43
Q5U2M6	591	DDB1- and CUL4-associated	yes	no	0.696	0.372	0.402	1e-42
Q28I90	604	DDB1- and CUL4-associated	yes	no	0.705	0.369	0.403	1e-42
A6NGE4	600	DDB1- and CUL4-associated	no	no	0.806	0.425	0.357	1e-37
P0C7V8	602	DDB1- and CUL4-associated	no	no	0.708	0.372	0.365	5e-36
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.25	0.091	0.512	1e-19
Q9DC22	876	DDB1- and CUL4-associated	no	no	0.25	0.090	0.512	1e-19

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 36/256 (14%)

Query: 2   VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 60
           V+F +  DLR D  A++L         +K+    + L  I ++P N + FAVGG D++ R
Sbjct: 307 VVFTI--DLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVR 357

Query: 61  VYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLF 118
           +YD RK        ++  +  FCP HL+ G++  +IT L YS + +ELL SYNDE +YLF
Sbjct: 358 IYDQRK---IDENENNGVLKKFCPHHLVNGESKANITCLVYSHDGTELLASYNDEDIYLF 414

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
             +   G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+
Sbjct: 415 NSSHSDGAQYV--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFL 461

Query: 179 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP---TDFPPLPDN 234
           W+K   ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP     T+   L D 
Sbjct: 462 WEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKD- 520

Query: 235 AEKIMKANKQGREDHS 250
              ++K NK+ R++ S
Sbjct: 521 ---VIKKNKRERDEDS 533

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Pongo abelii (taxid: 9601)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 150/253 (59%), Gaps = 30/253 (11%)

Query: 2   VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 60
           V+F +  DLR D  A++L         +K+    + L  I ++P N + FAVGG D+Y R
Sbjct: 301 VVFTI--DLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVR 351

Query: 61  VYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLF 118
           +YD RK        ++  +  FCP HL+  ++  +IT L YS + +ELL SYNDE +YLF
Sbjct: 352 IYDQRK---IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 408

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
             +   G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+
Sbjct: 409 NSSHSDGAQYI--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFL 455

Query: 179 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
           W+K   ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP       L    ++
Sbjct: 456 WEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELT-GLKE 514

Query: 238 IMKANKQGREDHS 250
           ++K NK+ R++ S
Sbjct: 515 VIKKNKRERDEDS 527

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q6NRH1|DCAF8_XENLA DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 150/253 (59%), Gaps = 30/253 (11%)

Query: 2   VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 60
           V+F +  DLR D  A+RL         +K+  + + L  I ++P N   FAVGG D++ R
Sbjct: 310 VVFTI--DLRQDRPASRLVV-------TKEKESKVGLYTIYVNPANTYQFAVGGRDQFVR 360

Query: 61  VYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLF 118
           +YD RK    +   ++  +  FCP HL+  +   +IT L YS + SELL SYNDE +YLF
Sbjct: 361 IYDQRK---INENVNNGVLKKFCPHHLVTSEAKANITCLVYSHDGSELLASYNDEDIYLF 417

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
             +   G              E  + Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+
Sbjct: 418 NSSHSDGA-------------EYIKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFL 464

Query: 179 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
           W+K   ++V+ M GD+  VVN LEPHPH+P+ AT G++  VK+W P   + P   D  ++
Sbjct: 465 WEKSSCQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKIWLPTAKE-PTELDGLKE 523

Query: 238 IMKANKQGREDHS 250
           ++K NK+ R++ S
Sbjct: 524 VIKKNKRERDEDS 536

Xenopus laevis (taxid: 8355)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/256 (40%), Positives = 151/256 (58%), Gaps = 36/256 (14%)

Query: 2   VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 60
           V+F +  DLR D  A++L         +K+    + L  I ++P N + FAVGG D++ R
Sbjct: 307 VVFTI--DLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVR 357

Query: 61  VYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLF 118
           +YD RK        ++  +  FCP HL+  ++  +IT L YS + +ELL SYNDE +YLF
Sbjct: 358 IYDQRK---IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 414

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
             +   G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+
Sbjct: 415 NSSHSDGAQYV--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFL 461

Query: 179 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP---TDFPPLPDN 234
           W+K   ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP     T+   L D 
Sbjct: 462 WEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKD- 520

Query: 235 AEKIMKANKQGREDHS 250
              ++K NK+ R++ S
Sbjct: 521 ---VIKKNKRERDEDS 533

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/256 (40%), Positives = 151/256 (58%), Gaps = 36/256 (14%)

Query: 2   VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 60
           V+F +  DLR D  A++L         +K+    + L  I ++P N + FAVGG D++ R
Sbjct: 301 VVFTI--DLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVR 351

Query: 61  VYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLF 118
           +YD RK        ++  +  FCP HL+  ++  +IT L YS + +ELL SYNDE +YLF
Sbjct: 352 IYDQRK---IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 408

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
             +   G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+
Sbjct: 409 NSSHSDGAQYI--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFL 455

Query: 179 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP---TDFPPLPDN 234
           W+K   ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP     T+   L D 
Sbjct: 456 WEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKD- 514

Query: 235 AEKIMKANKQGREDHS 250
              ++K NK+ R++ S
Sbjct: 515 ---VIKKNKRERDEDS 527

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q28I90|DCAF8_XENTR DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis GN=dcaf8 PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 149/253 (58%), Gaps = 30/253 (11%)

Query: 2   VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 60
           V+F +  DLR D  A+RL         +K+    + L  I ++P N   FAVGG D++ R
Sbjct: 313 VVFTI--DLRQDRPASRLVV-------TKEKEKKVGLYTIYVNPANTYQFAVGGRDQFVR 363

Query: 61  VYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLF 118
           +YD RK    +   ++  +  FCP HL+  +   +IT L YS + SELL SYNDE +YLF
Sbjct: 364 IYDQRK---INENVNNGVLKKFCPHHLVTSEAKANITCLVYSHDGSELLASYNDEDIYLF 420

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
             +   G              E  + Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+
Sbjct: 421 NSSHSDGA-------------EYIKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFL 467

Query: 179 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
           W+K   ++V+ M GD+  VVN LEPHPH+P+ AT G++  VK+W P   + P   +  ++
Sbjct: 468 WEKSSCQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKIWLPTAKE-PTELNGLKE 526

Query: 238 IMKANKQGREDHS 250
           ++K NK+ R++ S
Sbjct: 527 VIKKNKRERDEDS 539

Xenopus tropicalis (taxid: 8364)

>sp|A6NGE4|DC8L1_HUMAN DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 44/299 (14%)

Query: 2   VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 61
           V+F +  DLR D        +   EN K+    + L  I ++P N   FAVGG D++ R+
Sbjct: 310 VVFTI--DLRQDRPASKVVVTR--ENDKK----VGLYTISMNPANIYQFAVGGHDQFVRI 361

Query: 62  YDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYS-NTSELLISYNDELVYLFE 119
           YD R+        ++  +  F P HL+  +   +IT + YS + +ELL SYNDE +YLF 
Sbjct: 362 YDQRRI---DKKENNGVLKKFTPHHLVYCDFPTNITCVVYSHDGTELLASYNDEDIYLFN 418

Query: 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 179
            ++  G   +        KR     Y GHRN+ T+K VNF+GP  E+V+SGSDCGH+F W
Sbjct: 419 SSLSDGAQYV--------KR-----YKGHRNNDTIKCVNFYGPRSEFVVSGSDCGHVFFW 465

Query: 180 KKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNA 235
           +K   ++++ M GDR  +VN LEPHP++P+ AT G+++ V++W P     T+   L D  
Sbjct: 466 EKSSSQIIQFMEGDRGDIVNCLEPHPYLPVLATSGLDQHVRIWTPTAKTATELTGLKD-- 523

Query: 236 EKIMKANKQGREDHSRITLTPDVIMHVLR------LQRRQTLAYRERRYNAADFESDEE 288
             ++K NKQ R D   +  T      +LR      LQR     +R+   + A+F  +EE
Sbjct: 524 --VIKKNKQER-DEDNLNYTDSFDNRMLRFFVRHLLQRAHQPGWRD---HGAEFPDEEE 576

Homo sapiens (taxid: 9606)

>sp|P0C7V8|DC8L2_HUMAN DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 138/252 (54%), Gaps = 28/252 (11%)

Query: 2   VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 61
           V+F +  DLR D        +   EN K+    + L  I ++P N   FAVGG D++ R+
Sbjct: 313 VVFTI--DLRQDRPASKVVVTR--ENDKK----VGLYTITVNPANTYQFAVGGQDQFVRI 364

Query: 62  YDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYS-NTSELLISYNDELVYLFE 119
           YD RK        ++  +  F P HL+  +   +IT + YS + +ELL SYND+ +YLF 
Sbjct: 365 YDQRKI---DKKENNGVLKKFTPHHLVNCDFPTNITCVVYSHDGTELLASYNDDDIYLFN 421

Query: 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 179
            +   G            KR     + GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F W
Sbjct: 422 SSHSDGAQ--------YSKR-----FKGHRNNTTVKGVNFYGPRSEFVVSGSDCGHIFFW 468

Query: 180 KKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI 238
           +K   ++++ + G R   +N LEPHP++P+ A  G++  VK+W P       L    +K+
Sbjct: 469 EKSSCQIIQFLKGSREGTINCLEPHPYLPVLACSGLDHDVKIWTPTAKAATELT-GLKKV 527

Query: 239 MKANKQGREDHS 250
           +K NK  R++ S
Sbjct: 528 IKKNKWERDEDS 539

Homo sapiens (taxid: 9606)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 144 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
           VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct: 712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 769

Query: 203 HPHIPMFATCGIEKTVKLWAPM 224
           HP  P+ A+ GI+  +K+W+P+
Sbjct: 770 HPFDPILASSGIDYDIKIWSPL 791

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q9DC22|DCAF6_MOUSE DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 144 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
           VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct: 728 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 785

Query: 203 HPHIPMFATCGIEKTVKLWAPM 224
           HP  P+ A+ GI+  +K+W+P+
Sbjct: 786 HPFDPILASSGIDYDIKIWSPL 807

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
255582975	479	WD-repeat protein, putative [Ricinus com	0.990	0.653	0.755	1e-140
225435193	479	PREDICTED: DDB1- and CUL4-associated fac	0.974	0.643	0.721	1e-129
356557481	488	PREDICTED: DDB1- and CUL4-associated fac	0.990	0.641	0.717	1e-128
356547206	488	PREDICTED: DDB1- and CUL4-associated fac	0.990	0.641	0.704	1e-126
357453735	478	DDB1- and CUL4-associated factor [Medica	0.977	0.646	0.684	1e-124
113205238	454	WD domain containing protein, putative [	0.971	0.676	0.678	1e-120
449463637	480	PREDICTED: DDB1- and CUL4-associated fac	0.974	0.641	0.645	1e-115
297815706	481	transducin family protein [Arabidopsis l	0.974	0.640	0.630	1e-113
334185746	515	transducin/WD40 domain-containing protei	0.974	0.598	0.630	1e-112
15231191	481	transducin/WD40 domain-containing protei	0.974	0.640	0.630	1e-112

>gi|255582975|ref|XP_002532257.1| WD-repeat protein, putative [Ricinus communis] gi|223528045|gb|EEF30123.1| WD-repeat protein, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/315 (75%), Positives = 274/315 (86%), Gaps = 2/315 (0%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 63
           F   FDLRS SAT+LF CSSFSENS++P N IRLNAIVIDPRNP+YFAVGGSDEYARVYD
Sbjct: 165 FVQHFDLRSWSATKLFCCSSFSENSRRPSNWIRLNAIVIDPRNPHYFAVGGSDEYARVYD 224

Query: 64  IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 123
           IRKC W +  +SD  V+TFCPRHLIG  N+HITGLAYS+TSELL SYNDEL+YLF+K+MG
Sbjct: 225 IRKCRWDASSNSDIAVNTFCPRHLIGTKNVHITGLAYSSTSELLASYNDELIYLFQKSMG 284

Query: 124 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 183
           +GP PLS+S EDLQK EEPQVY GHRNS+TVKGV+FFGPNDEYV+SGSDCG++FIWKK+G
Sbjct: 285 MGPYPLSISSEDLQKLEEPQVYLGHRNSKTVKGVSFFGPNDEYVLSGSDCGNIFIWKKQG 344

Query: 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK 243
           GKLVRLM GDR VVNQ +PHPH+PMFATCGIEK+VKLW PM ++   +PDN EKIM++N+
Sbjct: 345 GKLVRLMFGDRQVVNQFDPHPHMPMFATCGIEKSVKLWIPMASEDSSIPDNVEKIMESNR 404

Query: 244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDAS 303
           QGREDHS+++LTPDVIMHVLRLQRRQTLAY ERRY+  D ESDE+EG+ Y+LGFS  DAS
Sbjct: 405 QGREDHSQVSLTPDVIMHVLRLQRRQTLAYIERRYSRGDVESDEDEGDAYVLGFSAGDAS 464

Query: 304 SEGG--GNQRECIIS 316
           SE G  GN REC IS
Sbjct: 465 SEEGSEGNSRECNIS 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435193|ref|XP_002284848.1| PREDICTED: DDB1- and CUL4-associated factor 8 [Vitis vinifera] gi|297746195|emb|CBI16251.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/312 (72%), Positives = 265/312 (84%), Gaps = 4/312 (1%)

Query: 8   FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC 67
           FDLRS+SAT+LFYCSSF+E ++Q  N+I LNAIVIDPRNPNYFAVGGSDEYARVYDIRK 
Sbjct: 169 FDLRSNSATKLFYCSSFTELNRQSRNNISLNAIVIDPRNPNYFAVGGSDEYARVYDIRKH 228

Query: 68  HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127
              S  + D PV+TFCP HL+G + ++ITGLAYSNTSELL+SYNDEL+YLF+KNMG+GP+
Sbjct: 229 QCDSSNNLDGPVNTFCPHHLVGAD-VYITGLAYSNTSELLVSYNDELIYLFQKNMGMGPT 287

Query: 128 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187
           PLS+ PE+LQK E+PQVY GHRNSQTVK V+FFGP D+YV+SGSDCGH+F+WKKKG KLV
Sbjct: 288 PLSVPPEELQKLEKPQVYLGHRNSQTVKSVSFFGPTDDYVLSGSDCGHIFVWKKKGAKLV 347

Query: 188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE 247
           RL  GD+ +VN LEPHP++P+FA+CGIE ++KLW PM     PLPD+AEKIM++N+QGRE
Sbjct: 348 RLTAGDQQIVNHLEPHPYMPIFASCGIENSIKLWIPMADGSLPLPDDAEKIMESNRQGRE 407

Query: 248 DHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEE-EGETYLLGFSDSDASSEG 306
           DHS ITLTPDVIMHVLRLQRRQ  AY ERRY+ AD E+DEE EGE YLLGFSD +ASSE 
Sbjct: 408 DHSLITLTPDVIMHVLRLQRRQNAAYIERRYDRADIENDEEDEGEAYLLGFSDGEASSEE 467

Query: 307 G--GNQRECIIS 316
           G  GN  EC IS
Sbjct: 468 GFTGNTAECNIS 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557481|ref|XP_003547044.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/315 (71%), Positives = 259/315 (82%), Gaps = 2/315 (0%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 63
           F   FDLRS+SAT+LF CSS   N+KQ ++ + LN+IVIDPRNP YFA+GGSDEYARVYD
Sbjct: 174 FIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDPRNPYYFAIGGSDEYARVYD 233

Query: 64  IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 123
           IRKC W S  +SD PV+TFCP HLIG NN+HITGLAYS+ SELL+SYNDEL+YLFEKN+ 
Sbjct: 234 IRKCQWGSARNSDRPVNTFCPCHLIGSNNVHITGLAYSSFSELLVSYNDELIYLFEKNVH 293

Query: 124 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 183
              SP S + ED +   E QVYSGHRN+QT+KGVNFFGPNDEY+MSGSDCGH+FIWKKK 
Sbjct: 294 SDSSPSSATSEDPKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYIMSGSDCGHIFIWKKKE 353

Query: 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK 243
            KLVRLMVGD+HVVNQLE HPHIP+ ATCGIEK VK+WAP+  D PPLP N ++IM+ N+
Sbjct: 354 AKLVRLMVGDQHVVNQLEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPANVKEIMETNR 413

Query: 244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDAS 303
           QGRED SR+TLTPDVIMHVLRLQRRQTLAY ERR+N AD  SDEE+ E YLLGFSD DAS
Sbjct: 414 QGREDRSRVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFSDGDAS 473

Query: 304 SE--GGGNQRECIIS 316
           SE    GN R+C IS
Sbjct: 474 SEEDSPGNSRDCNIS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547206|ref|XP_003542007.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/315 (70%), Positives = 256/315 (81%), Gaps = 2/315 (0%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 63
           F   FDLRS+SAT+LF CSS   N+KQ ++ + LN+IVID RNP YFA+GGSDEYARVYD
Sbjct: 174 FIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDCRNPYYFAIGGSDEYARVYD 233

Query: 64  IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 123
           +RKC W S  +SD PV+TFCPRHLIG NN+HITGLAYS+  ELL+SYNDEL+YLFEKNM 
Sbjct: 234 MRKCQWDSARNSDRPVNTFCPRHLIGSNNVHITGLAYSSFGELLVSYNDELIYLFEKNMH 293

Query: 124 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 183
              SP S + ED +   E QVYSGHRN+QT+KGVNFFGPNDEYV+SGSDCGH+FIWKKK 
Sbjct: 294 SDSSPSSATSEDSKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKE 353

Query: 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK 243
            KLVRLMVGD+HVVNQ E HPHIP+ ATCGIEK VK+WAP+  D PPLP N ++IM+ N+
Sbjct: 354 AKLVRLMVGDQHVVNQHEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPGNVKEIMETNR 413

Query: 244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDAS 303
           QGRED S++TLTPDVIMHVLRLQRRQTLAY ERR+N AD  SDEE+ E YLLGF D DAS
Sbjct: 414 QGREDRSQVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFLDGDAS 473

Query: 304 SEGG--GNQRECIIS 316
           SE    GN R+C IS
Sbjct: 474 SEEDYPGNSRDCNIS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453735|ref|XP_003597148.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355486196|gb|AES67399.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/311 (68%), Positives = 247/311 (79%), Gaps = 2/311 (0%)

Query: 8   FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC 67
           FDLRS+SAT+LF CSS   N KQP   I LN+IVID R P YF+VGGSDEYARVYDIRKC
Sbjct: 168 FDLRSNSATKLFCCSSTKGNKKQPPGKIGLNSIVIDSRIPYYFSVGGSDEYARVYDIRKC 227

Query: 68  HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127
           HW +   SD PV+TFCP HLIG  N+HITGLAYS +SELL+SYND+L+YLFEKN      
Sbjct: 228 HWAASKDSDQPVNTFCPHHLIGSKNVHITGLAYSKSSELLVSYNDDLIYLFEKNSSFDSL 287

Query: 128 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187
           P S + ED +  +E QVYSGHRN++TVKGV+FFGPNDEYV+SGSDCGH+FIW KK  KLV
Sbjct: 288 PSSAACEDPKNLQETQVYSGHRNAKTVKGVSFFGPNDEYVLSGSDCGHIFIWSKKEAKLV 347

Query: 188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE 247
           RLMVGDRHVVNQLE HPHIP  ATCGIEK VK+WAP+ +D PPLP N ++I++AN+QGRE
Sbjct: 348 RLMVGDRHVVNQLEAHPHIPFLATCGIEKNVKIWAPLGSDTPPLPSNVKEIIEANRQGRE 407

Query: 248 DHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGG 307
           D  ++TL PDVIMHVLRLQRRQTLAY ERR+N+AD  SD+E+ E Y LG  D D SSE  
Sbjct: 408 DRLQVTLAPDVIMHVLRLQRRQTLAYTERRHNSADIVSDDEDAEDYFLGLLDGDVSSEED 467

Query: 308 --GNQRECIIS 316
             GN R+C IS
Sbjct: 468 SLGNSRDCNIS 478

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205238|gb|ABI34308.1| WD domain containing protein, putative [Solanum demissum]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/317 (67%), Positives = 254/317 (80%), Gaps = 10/317 (3%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 63
           F   +DLRS+S+++LF CSSF+EN+KQ   SIRLN IVIDPRNPNYFAVGGSDEYARVYD
Sbjct: 144 FVQHYDLRSNSSSKLFRCSSFTENNKQS-GSIRLNGIVIDPRNPNYFAVGGSDEYARVYD 202

Query: 64  IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 123
           IR     +  SSD  +DTFCP HLI  +++HIT LAYSNTSELL+SYNDEL+YLF+KNMG
Sbjct: 203 IRMYQLDARTSSDRSIDTFCPHHLIKTHDVHITALAYSNTSELLVSYNDELIYLFQKNMG 262

Query: 124 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 183
           LGP PLSL  EDL K E+PQVYSGHRNSQTVKGV+FFGP DEYV++GSDCGH+FIWKKK 
Sbjct: 263 LGPVPLSLQGEDLNKLEKPQVYSGHRNSQTVKGVSFFGPTDEYVLTGSDCGHIFIWKKKD 322

Query: 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK 243
            KLVR+MVGDRH+VNQL+PHP IP+ ATCGIEKT+KLWAP   D  PLP + ++IM+AN+
Sbjct: 323 AKLVRVMVGDRHIVNQLKPHPCIPVLATCGIEKTIKLWAPTSKDVTPLPPDVQEIMEANR 382

Query: 244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEE----GETYLLGFSD 299
           +GREDHSR+TLTPD+IMHVLRL RRQ LAY ERR N    +SD+++    G  Y+LGFSD
Sbjct: 383 RGREDHSRVTLTPDMIMHVLRLHRRQALAYIERRENLGYVDSDDDDDDIGGGAYVLGFSD 442

Query: 300 SDASSEGGGNQRECIIS 316
            +      G   EC IS
Sbjct: 443 GEE-----GENSECSIS 454

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463637|ref|XP_004149538.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus] gi|449532795|ref|XP_004173364.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/313 (64%), Positives = 245/313 (78%), Gaps = 5/313 (1%)

Query: 8   FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC 67
           FDLR+ SA +LFYC++F+E S+ P NSI LNAI IDPRNPN+FA+GGSDEYAR+YD+R C
Sbjct: 169 FDLRNTSARKLFYCTAFAERSRHPPNSIELNAIAIDPRNPNFFALGGSDEYARLYDLRNC 228

Query: 68  HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127
                 SS+  VDTFCP HL   NN HITGL +SN+SELLI+Y+DEL+YLF+KNMGLGPS
Sbjct: 229 RG-DVTSSNRVVDTFCPHHLTQTNNFHITGLVFSNSSELLITYSDELIYLFQKNMGLGPS 287

Query: 128 PLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 186
           PL++S E+L +  + P V+SGHRNS TVKGVNFFGPN EY++SGSDCGH++IWKKKG  L
Sbjct: 288 PLTVSSENLLRELKRPHVFSGHRNSATVKGVNFFGPNAEYIVSGSDCGHIYIWKKKGALL 347

Query: 187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 246
           V+LM+GD  VVN +EPHPH+P+ ATCGIE  VK+W PM +D PPLPD+ E+IM++NKQGR
Sbjct: 348 VKLMLGDHDVVNHIEPHPHLPILATCGIENNVKIWTPMASDVPPLPDDMEQIMESNKQGR 407

Query: 247 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESD-EEEGETYLLGFSDSDASSE 305
           E+HSR+TLTPDVI+HVLRLQRRQT A+ ERRYN AD  SD E E E Y     D   S E
Sbjct: 408 EEHSRVTLTPDVIVHVLRLQRRQTSAFTERRYNPADNNSDGENEWEAYNQEALDGSVSFE 467

Query: 306 GGGNQR--ECIIS 316
               +   EC IS
Sbjct: 468 DDSTEHASECNIS 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815706|ref|XP_002875736.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321574|gb|EFH51995.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/319 (63%), Positives = 242/319 (75%), Gaps = 11/319 (3%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNS--IRLNAIVIDPRNPNYFAVGGSDEYARV 61
           F   FD+RS+SAT + Y S F++  ++  +S  IRLN+I IDPRN  Y AVGGSDEYARV
Sbjct: 168 FVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARV 227

Query: 62  YDIRKCHWYSPISS----DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL 117
           YD R+    +P+      D PV+TFCPRHL   N++H+TGLAYS   ELL+SYNDEL+YL
Sbjct: 228 YDTRRGQ-LAPVCRHVLPDAPVNTFCPRHLRETNSVHVTGLAYSKAGELLVSYNDELIYL 286

Query: 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 177
           FEKNMG GPSP+S+SPE LQ+ EEPQVY+GHRN+QTVKGV FFGPNDEYV SGSDCGH+F
Sbjct: 287 FEKNMGYGPSPVSISPEKLQEMEEPQVYTGHRNAQTVKGVKFFGPNDEYVTSGSDCGHIF 346

Query: 178 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
           IWKKKGGKLVR MVGDR VVNQLE HPHIP+ A+CGIEK+VKLW PM  D   LP+  EK
Sbjct: 347 IWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVFSLPEKIEK 406

Query: 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGF 297
           +M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT A+ ERRY + D  SD+     ++   
Sbjct: 407 VMELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDDGNDAHFIASL 466

Query: 298 SDSDASSEGGGNQRECIIS 316
            D+D  S    ++REC +S
Sbjct: 467 VDNDDES----SERECTVS 481

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185746|ref|NP_001190014.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332644531|gb|AEE78052.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/319 (63%), Positives = 239/319 (74%), Gaps = 11/319 (3%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNS--IRLNAIVIDPRNPNYFAVGGSDEYARV 61
           F   FD+RS+SAT + Y S F++  ++  +S  IRLN+I IDPRN  Y AVGGSDEYARV
Sbjct: 202 FVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARV 261

Query: 62  YDIRKCHWYSPISS----DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL 117
           YD R+    +P+      D PV+TFCPRHL   N++HITGLAYS   ELL+SYNDEL+YL
Sbjct: 262 YDTRRVQL-APVCRHVLPDAPVNTFCPRHLRETNSVHITGLAYSKAGELLVSYNDELIYL 320

Query: 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 177
           FEKNMG G SP+S+SPE LQ+ EEPQVY GHRN+QTVKGVNFFGPNDEYV SGSDCGH+F
Sbjct: 321 FEKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIF 380

Query: 178 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
           IWKKKGGKLVR MVGDR VVNQLE HPHIP+ A+CGIEK+VKLW PM  D   LP+  +K
Sbjct: 381 IWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVLSLPEKIDK 440

Query: 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGF 297
           +M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT A+ ERRY + D  SDE     ++   
Sbjct: 441 VMELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDEGNDARFIASL 500

Query: 298 SDSDASSEGGGNQRECIIS 316
             +D  S    + REC +S
Sbjct: 501 VANDDES----SDRECTVS 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231191|ref|NP_190148.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|6996265|emb|CAB75491.1| putative protein [Arabidopsis thaliana] gi|26450489|dbj|BAC42358.1| unknown protein [Arabidopsis thaliana] gi|28973383|gb|AAO64016.1| unknown protein [Arabidopsis thaliana] gi|332644530|gb|AEE78051.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/319 (63%), Positives = 239/319 (74%), Gaps = 11/319 (3%)

Query: 4   FNMLFDLRSDSATRLFYCSSFSENSKQPMNS--IRLNAIVIDPRNPNYFAVGGSDEYARV 61
           F   FD+RS+SAT + Y S F++  ++  +S  IRLN+I IDPRN  Y AVGGSDEYARV
Sbjct: 168 FVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARV 227

Query: 62  YDIRKCHWYSPISS----DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL 117
           YD R+    +P+      D PV+TFCPRHL   N++HITGLAYS   ELL+SYNDEL+YL
Sbjct: 228 YDTRRVQ-LAPVCRHVLPDAPVNTFCPRHLRETNSVHITGLAYSKAGELLVSYNDELIYL 286

Query: 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 177
           FEKNMG G SP+S+SPE LQ+ EEPQVY GHRN+QTVKGVNFFGPNDEYV SGSDCGH+F
Sbjct: 287 FEKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIF 346

Query: 178 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
           IWKKKGGKLVR MVGDR VVNQLE HPHIP+ A+CGIEK+VKLW PM  D   LP+  +K
Sbjct: 347 IWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVLSLPEKIDK 406

Query: 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGF 297
           +M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT A+ ERRY + D  SDE     ++   
Sbjct: 407 VMELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDEGNDARFIASL 466

Query: 298 SDSDASSEGGGNQRECIIS 316
             +D  S    + REC +S
Sbjct: 467 VANDDES----SDRECTVS 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2132796	496	AT4G35140 "AT4G35140" [Arabido	0.955	0.608	0.442	8.5e-65
TAIR|locus:2121164	471	AT4G38480 "AT4G38480" [Arabido	0.699	0.469	0.523	1.9e-60
UNIPROTKB|Q5R448	597	DCAF8 "DDB1- and CUL4-associat	0.832	0.440	0.397	7.9e-46
MGI|MGI:91860	591	Dcaf8 "DDB1 and CUL4 associate	0.832	0.445	0.401	1.6e-45
RGD|1308513	591	Dcaf8 "DDB1 and CUL4 associate	0.832	0.445	0.397	7.1e-45
UNIPROTKB|Q5TAQ9	597	DCAF8 "DDB1- and CUL4-associat	0.832	0.440	0.391	9.1e-45
UNIPROTKB|G3V3G9	751	DCAF8 "DDB1- and CUL4-associat	0.832	0.350	0.391	3e-44
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.427	0.166	0.385	7.5e-29
UNIPROTKB|F1MBJ1	877	DCAF6 "Uncharacterized protein	0.430	0.155	0.402	2e-28
MGI|MGI:1921356	876	Dcaf6 "DDB1 and CUL4 associate	0.344	0.124	0.424	2.6e-28

TAIR|locus:2132796 AT4G35140 "AT4G35140" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 145/328 (44%), Positives = 196/328 (59%)

Query:     8 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC 67
             FDLR+++ T LF C S     +  M++I+LNAI IDPRN N FAVGG +EYAR+YDIR+ 
Sbjct:   176 FDLRTEAPTELFTCRSVDPRRRN-MDAIQLNAIAIDPRNSNLFAVGGMEEYARLYDIRRF 234

Query:    68 HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127
                         D FCP HLIG  ++ ITGLA+S  SELL+SYNDE +YLF   MGLG +
Sbjct:   235 QGEGLNGFTRAADHFCPPHLIGNEDVGITGLAFSEQSELLVSYNDEFIYLFTPGMGLGSN 294

Query:   128 PL---------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 172
             P+               S SP+D  +     VY GH+N +TVKGVNFFGP  EYV+SGSD
Sbjct:   295 PIPSSPISKSPVSKSESSSSPKDENEHSVSLVYKGHKNCETVKGVNFFGPRSEYVVSGSD 354

Query:   173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP 232
             CG +FIW+KKGG+L+R+M  DRHVVN +EPHPHIP+ A+ GIE  +K+W     +   LP
Sbjct:   355 CGRIFIWRKKGGELIRVMEADRHVVNCIEPHPHIPVLASSGIESDIKVWTSKAAERATLP 414

Query:   233 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGET 292
             +N E + K   +G     R++   +++  +  LQ R + +  ER   ++   +   E   
Sbjct:   415 ENIE-LRKRTPRGWM--YRVSSPHELLAQLFSLQNRSSSS-PEREGESSS--ATGRELLD 468

Query:   293 YLLGFSD-SD---ASSEGGGNQRECIIS 316
              +L F+D SD   A+ +  GN  E   S
Sbjct:   469 LILTFNDQSDDENATDDDDGNSHEDFFS 496

GO:0000166 "nucleotide binding" evidence=ISS

TAIR|locus:2121164 AT4G38480 "AT4G38480" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 122/233 (52%), Positives = 156/233 (66%)

Query:     8 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC 67
             FDLR+  AT LF C     N       + L+AI +DPRNP   AV G DEYARVYDIR  
Sbjct:   172 FDLRTRVATNLFTCKEAKFNLV-----VYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSY 226

Query:    68 H---WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 124
                 WY+      P+D FCP HLIG +++ ITGLA+S+ SELL SY+DE +YLF  +MGL
Sbjct:   227 RSEGWYN---FTQPIDHFCPGHLIGDDHVGITGLAFSDQSELLASYSDEFIYLFTPDMGL 283

Query:   125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 184
             GP+P   S +  ++R  PQVY  H N +TVKGVNFFGP  EYV+SGSDCG +FIW+KK G
Sbjct:   284 GPTPYPSSTKT-EERMTPQVYKEHTNRETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDG 342

Query:   185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237
             +L+R M  DRHVVN +E HPH+P+  + GI+  +K+W P  T+ P  P NA++
Sbjct:   343 ELLRAMEADRHVVNCIESHPHMPLMCSSGIDTDIKIWTPGGTEKPLSPGNAKQ 395

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q5R448 DCAF8 "DDB1- and CUL4-associated factor 8" [Pongo abelii (taxid:9601)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 119/299 (39%), Positives = 168/299 (56%)

Query:    28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 87
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   325 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 381

Query:    88 I-GKNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 145
             + G++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   382 VNGESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----Y 428

Query:   146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 204
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   429 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 488

Query:   205 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----V 258
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R++ S  R  L        
Sbjct:   489 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHRTDLFDSHMLWF 547

Query:   259 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 316
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   548 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 597

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

MGI|MGI:91860 Dcaf8 "DDB1 and CUL4 associated factor 8" [Mus musculus (taxid:10090)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 120/299 (40%), Positives = 167/299 (55%)

Query:    28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 87
             +K+    + L  I ++P N + FAVGG D+Y R+YD RK        ++  +  FCP HL
Sbjct:   319 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI---DENENNGVLKKFCPHHL 375

Query:    88 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 145
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   376 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----Y 422

Query:   146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 204
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   423 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 482

Query:   205 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPD-----V 258
             H+P+ AT G++  VK+WAP       L    ++++K NK+ R ED    T   D      
Sbjct:   483 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKEVIKKNKRERDEDSLHHTDLFDSHMLWF 541

Query:   259 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 316
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   542 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 591

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

RGD|1308513 Dcaf8 "DDB1 and CUL4 associated factor 8" [Rattus norvegicus (taxid:10116)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 119/299 (39%), Positives = 166/299 (55%)

Query:    28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 87
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   319 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 375

Query:    88 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 145
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   376 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----Y 422

Query:   146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 204
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   423 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 482

Query:   205 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPD-----V 258
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R ED    T   D      
Sbjct:   483 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHHTDLFDSHMLWF 541

Query:   259 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 316
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   542 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 591

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

UNIPROTKB|Q5TAQ9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 117/299 (39%), Positives = 167/299 (55%)

Query:    28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 87
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   325 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 381

Query:    88 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 145
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   382 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----Y 428

Query:   146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 204
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   429 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 488

Query:   205 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----V 258
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R++ S  +  L        
Sbjct:   489 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHQTDLFDSHMLWF 547

Query:   259 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 316
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   548 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 597

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G3V3G9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 3.0e-44, P = 3.0e-44
 Identities = 117/299 (39%), Positives = 167/299 (55%)

Query:    28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 87
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   479 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 535

Query:    88 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 145
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   536 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----Y 582

Query:   146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 204
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   583 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 642

Query:   205 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----V 258
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R++ S  +  L        
Sbjct:   643 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHQTDLFDSHMLWF 701

Query:   259 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 316
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   702 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 751

GO:0005777 "peroxisome" evidence=IEA

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 237 (88.5 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
 Identities = 59/153 (38%), Positives = 83/153 (54%)

Query:   125 GPSPLSLSPEDLQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 176
             GP+ LSL  +  +K  EP V        Y GH N +++K VNF+G NDEYVMSGSD G  
Sbjct:   637 GPTLLSLRMKK-RKAVEPNVPVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRF 695

Query:   177 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL----- 231
             FIW K    ++ ++ GD   VN +E HP  P  A  GI+ TVK++    T  PP      
Sbjct:   696 FIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVKIFNTENT--PPSGCSRN 753

Query:   232 -PDNAEKIMKANKQGREDHSRIT-LTPDVIMHV 262
                N+ KI+  N+  R+  SR + +T  ++ H+
Sbjct:   754 HTSNSYKIIATNEMNRQQGSRDSYITSRMLSHL 786

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1MBJ1 DCAF6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 60/149 (40%), Positives = 86/149 (57%)

Query:   144 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
             VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct:   729 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 786

Query:   203 HPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMH 261
             HP  P+ A+ GI+  +K+W+P+          A++++  N+   E+ +R T+T P   M 
Sbjct:   787 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE-TRNTITVPASFM- 844

Query:   262 VLRLQRRQTLAYRERRYNAADFESDEEEG 290
              LR+     LA       A   ESD  EG
Sbjct:   845 -LRM-----LASLNH-IRADRLESDRSEG 866

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1921356 Dcaf6 "DDB1 and CUL4 associated factor 6" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 48/113 (42%), Positives = 73/113 (64%)

Query:   144 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202
             VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct:   728 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 785

Query:   203 HPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 255
             HP  P+ A+ GI+  +K+W+P+          A++++  N+   E+ +R T+T
Sbjct:   786 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE-TRNTIT 837

GO:0005634 "nucleus" evidence=ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024466001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (479 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028385001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1089 aa)					•		•		0.436

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 35/175 (20%)

Query: 48  NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107
            Y A G SD+  R++D+                  C R L G  + +++ +A+S    +L
Sbjct: 64  TYLASGSSDKTIRLWDLETGE--------------CVRTLTGHTS-YVSSVAFSPDGRIL 108

Query: 108 I-SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 166
             S  D+ + ++                D++  +      GH +   V  V  F P+  +
Sbjct: 109 SSSSRDKTIKVW----------------DVETGKCLTTLRGHTDW--VNSV-AFSPDGTF 149

Query: 167 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
           V S S  G + +W  + GK V  + G    VN +   P      +   + T+KLW
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 48/192 (25%)

Query: 38  NAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-- 94
           N++   P     F    S D   +++D+R             V T            H  
Sbjct: 139 NSVAFSP--DGTFVASSSQDGTIKLWDLRTGK---------CVATL---------TGHTG 178

Query: 95  -ITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 152
            +  +A+S    +LL S +D  + L+                DL   +      GH N  
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLW----------------DLSTGKCLGTLRGHEN-- 220

Query: 153 TVKGVNF--FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 210
              GVN   F P+   + SGS+ G + +W  + G+ V+ + G  + V  L   P     A
Sbjct: 221 ---GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 211 TCGIEKTVKLWA 222
           +   + T+++W 
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 95  ITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
           +T +A+S   +LL +   D  + ++                DL+  E  +   GH  +  
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVW----------------DLETGELLRTLKGH--TGP 53

Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
           V+ V     +  Y+ SGS    + +W  + G+ VR + G    V+ +   P   + ++  
Sbjct: 54  VRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 214 IEKTVKLW 221
            +KT+K+W
Sbjct: 113 RDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 33/176 (18%)

Query: 46  NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 105
           +    A G  D   +V+D         + +   + T    H     ++     A ++ + 
Sbjct: 20  DGKLLATGSGDGTIKVWD---------LETGELLRTLKG-HTGPVRDV----AASADGTY 65

Query: 106 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 165
           L    +D+ + L+                DL+  E  +  +GH  +  V  V F  P+  
Sbjct: 66  LASGSSDKTIRLW----------------DLETGECVRTLTGH--TSYVSSVAFS-PDGR 106

Query: 166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
            + S S    + +W  + GK +  + G    VN +   P     A+   + T+KLW
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 37/213 (17%)

Query: 12  SDSATRLF-YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 70
           SD   RL+   SS S       +S  + ++   P +    A G SD   R++D+      
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLL 319

Query: 71  SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSP 128
           S ++                +   ++ L++S    LL+S   +D  + L+          
Sbjct: 320 SSLTLKG-------------HEGPVSSLSFSPDGSLLVSGGSDDGTIRLW---------- 356

Query: 129 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 188
                 DL+  +  +   GH N  +V     F P+   V SGS  G + +W    G L+R
Sbjct: 357 ------DLRTGKPLKTLEGHSNVLSVS----FSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
            + G    V  L+  P     A+   + T++LW
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 37/189 (19%)

Query: 36  RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 95
            + ++   P      +    D   +++D+R     S ++  T                 +
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP---------------V 201

Query: 96  TGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
           + LA+S    LLI+   +D  + L++ + G               +      SGH +S  
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTG---------------KLLRSTLSGHSDSV- 245

Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 212
              V+ F P+   + SGS  G + +W  +    L+R + G    V  +   P   + A+ 
Sbjct: 246 ---VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 213 GIEKTVKLW 221
             + TV+LW
Sbjct: 303 SSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 14/224 (6%)

Query: 11  RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK---C 67
             D   +L+   +    S    ++  ++++   P      A G SD   R++D+      
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Query: 68  HWYSPISSDTPVDTFCPRHLI-----GKNNIHITGLAYSNTSELLISYNDELVY--LF-- 118
                  SD+ V +F P   +         I +  L  S++    +S +   V    F  
Sbjct: 235 RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 119 -EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 177
             K +  G S  ++   DL+  +     +   +   V  ++F       V  GSD G + 
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 178 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
           +W  + GK ++ + G    V  +   P   + ++   + TV+LW
Sbjct: 355 LWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG1334	559	consensus WD40 repeat protein [General function pr	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.56
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
KOG4227	609	consensus WD40 repeat protein [General function pr	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.53
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.42
KOG1310	758	consensus WD40 repeat protein [General function pr	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
KOG1334	559	consensus WD40 repeat protein [General function pr	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
KOG4547	541	consensus WD40 repeat-containing protein [General	99.4
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.37
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.36
KOG1963	792	consensus WD40 repeat protein [General function pr	99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.33
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.23
COG4946	668	Uncharacterized protein related to the periplasmic	99.22
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.21
PRK04792	448	tolB translocation protein TolB; Provisional	99.21
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.18
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.17
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.17
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
KOG2315	566	consensus Predicted translation initiation factor	99.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.08
KOG2315	566	consensus Predicted translation initiation factor	99.06
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.0
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.98
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.92
PRK04043	419	tolB translocation protein TolB; Provisional	98.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.9
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.86
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.86
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.86
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.85
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.82
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.81
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.72
KOG2314	698	consensus Translation initiation factor 3, subunit	98.71
COG4946	668	Uncharacterized protein related to the periplasmic	98.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.68
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.61
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.61
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.56
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.51
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.49
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.49
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.47
KOG2314	698	consensus Translation initiation factor 3, subunit	98.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.45
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.38
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.37
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.36
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.3
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.29
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.24
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.23
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.17
KOG3621	726	consensus WD40 repeat-containing protein [General	98.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.05
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.98
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.98
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.92
PRK02888	635	nitrous-oxide reductase; Validated	97.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.89
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.84
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.81
KOG3621	726	consensus WD40 repeat-containing protein [General	97.8
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.78
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.74
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.66
KOG2444	238	consensus WD40 repeat protein [General function pr	97.66
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.56
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.52
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.47
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.41
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.41
PRK02888	635	nitrous-oxide reductase; Validated	97.4
PRK13616	591	lipoprotein LpqB; Provisional	97.32
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.29
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.26
KOG2395	644	consensus Protein involved in vacuole import and d	97.24
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.22
COG3391	381	Uncharacterized conserved protein [Function unknow	97.21
PHA02713	557	hypothetical protein; Provisional	97.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.14
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.1
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.06
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.94
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.92
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.88
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.75
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.7
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.62
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.61
KOG2395	644	consensus Protein involved in vacuole import and d	96.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.56
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.5
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.47
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.3
PRK13616	591	lipoprotein LpqB; Provisional	96.3
KOG2444	238	consensus WD40 repeat protein [General function pr	96.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.09
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.88
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.84
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.82
PHA03098	534	kelch-like protein; Provisional	95.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.67
COG3391	381	Uncharacterized conserved protein [Function unknow	95.65
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.61
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.49
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.39
PHA02713	557	hypothetical protein; Provisional	95.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.22
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.16
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.06
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.74
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.71
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.57
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.54
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.36
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.36
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.33
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.32
PRK13684	334	Ycf48-like protein; Provisional	94.31
COG5167	776	VID27 Protein involved in vacuole import and degra	94.13
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.07
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.78
PHA03098	534	kelch-like protein; Provisional	93.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.6
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.55
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.27
PHA02790	480	Kelch-like protein; Provisional	93.18
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.68
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.62
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.38
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.21
KOG2247	615	consensus WD40 repeat-containing protein [General	91.85
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.43
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.19
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.86
PHA02790	480	Kelch-like protein; Provisional	90.33
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.26
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.26
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.49
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.49
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.17
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.93
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.87
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.65
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.14
COG5167	776	VID27 Protein involved in vacuole import and degra	87.93
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.61
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.19
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.67
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.56
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.37
PRK10115	686	protease 2; Provisional	86.24
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.92
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.62
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.18
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.86
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.84
PRK13684	334	Ycf48-like protein; Provisional	83.72
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.39
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.34
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.92
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.7
PRK10115	686	protease 2; Provisional	82.47
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	82.2
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	82.17
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.9
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.56
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	80.99

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-44  Score=279.32  Aligned_cols=254  Identities=21%  Similarity=0.374  Sum_probs=216.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +-+||+||+.+..+  .++++         ||..-|.|++|+|++ ..||+|+.||.|++||..+++             
T Consensus       136 D~TvR~WD~~TeTp--~~t~K---------gH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~-------------  190 (480)
T KOG0271|consen  136 DTTVRLWDLDTETP--LFTCK---------GHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ-------------  190 (480)
T ss_pred             CceEEeeccCCCCc--ceeec---------CCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC-------------
Confidence            35799999988665  55543         689999999999999 999999999999999999998             


Q ss_pred             cccccccCCCcccEEEEEEccC-----CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNT-----SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                       +....+.+|...|++++|.|-     .++|+++ .||.|+|||+..+                ..+..+.+|+..  |+
T Consensus       191 -~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----------------~~~~~lsgHT~~--VT  251 (480)
T KOG0271|consen  191 -QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----------------TCVRTLSGHTAS--VT  251 (480)
T ss_pred             -cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----------------eEEEEeccCccc--eE
Confidence             444444899999999999873     4588885 6999999999988                788899999977  99


Q ss_pred             eEEEecCCCcEEEEeccCCeEEEEeccCCeeEE-----------------------------------------------
Q 021160          156 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-----------------------------------------------  188 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~-----------------------------------------------  188 (316)
                      |+.| . ...+|++|+.|++|++|+...|++++                                               
T Consensus       252 Cvrw-G-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  252 CVRW-G-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             EEEE-c-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            9998 4 34588899999999999876654332                                               


Q ss_pred             --------------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCc
Q 021160          189 --------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA  235 (316)
Q Consensus       189 --------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~  235 (316)
                                                      .+.+|...|+.+.|+||++++|++|.|+.|++|+-++++ +.++++|.
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv  409 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV  409 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence                                            445677789999999999999999999999999999998 89999999


Q ss_pred             ccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCCCCCCCCcceee
Q 021160          236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQREC  313 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  313 (316)
                      ..+++++ |+.|.+++++++.|.++++|++++++.         ..++++++|+  ||.+|.+.+..--..+|-+++-
T Consensus       410 ~~VYqva-wsaDsRLlVS~SkDsTLKvw~V~tkKl---------~~DLpGh~DE--Vf~vDwspDG~rV~sggkdkv~  475 (480)
T KOG0271|consen  410 AAVYQVA-WSADSRLLVSGSKDSTLKVWDVRTKKL---------KQDLPGHADE--VFAVDWSPDGQRVASGGKDKVL  475 (480)
T ss_pred             ceeEEEE-eccCccEEEEcCCCceEEEEEeeeeee---------cccCCCCCce--EEEEEecCCCceeecCCCceEE
Confidence            9999998 899999999999999999999998855         5889999999  9999998776655555555543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-40  Score=263.08  Aligned_cols=255  Identities=14%  Similarity=0.196  Sum_probs=220.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|.++||...+......+.           ||...|.++.|+|. ....+|+|+.||++++|++.+..            
T Consensus       196 sG~~kvW~~~~~~~~~~l~-----------gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~------------  252 (459)
T KOG0272|consen  196 SGLVKVWSVPQCNLLQTLR-----------GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET------------  252 (459)
T ss_pred             CCceeEeecCCcceeEEEe-----------ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc------------
Confidence            6899999987765544444           58999999999998 34799999999999999998654            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        .+..+ .+|...|..++|+|+|++|+++ -|.+-++||++++                ..+....||..+  |.+++|
T Consensus       253 --~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf  311 (459)
T KOG0272|consen  253 --PLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF  311 (459)
T ss_pred             --chhhh-hcchhhheeeeecCCCceeeecccccchhhcccccc----------------hhhHhhcccccc--cceeEe
Confidence              22222 8999999999999999999995 6999999999998                677778999966  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                       .++|.++++|+.|..-++||+++|+++..+.+|...|.+++|+|+|..|||||.|++++|||++... +.+++.|.+-|
T Consensus       312 -~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV  390 (459)
T KOG0272|consen  312 -QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV  390 (459)
T ss_pred             -cCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh
Confidence             9999999999999999999999999999999999999999999999999999999999999999887 88999999988


Q ss_pred             eeeeecCC-CCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCCCCCCCCcceee
Q 021160          239 MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQREC  313 (316)
Q Consensus       239 ~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  313 (316)
                      ..+. +.+ .+.+++|++.|+++++|...+.+.         ...+++|++.  |+.+|.+.+...-...+-+|-|
T Consensus       391 S~Vk-~~p~~g~fL~TasyD~t~kiWs~~~~~~---------~ksLaGHe~k--V~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  391 SQVK-YSPQEGYFLVTASYDNTVKIWSTRTWSP---------LKSLAGHEGK--VISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             hheE-ecccCCeEEEEcccCcceeeecCCCccc---------chhhcCCccc--eEEEEeccCCceEEEeccCcee
Confidence            6666 555 899999999999999999777655         4678888887  9999988766544444555544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5e-39  Score=253.95  Aligned_cols=217  Identities=16%  Similarity=0.248  Sum_probs=198.0

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|+|++|++.+..+...+.           ||...|..++|+|+| ++|++++.|.+-++||+++++            
T Consensus       239 ~Dgtvklw~~~~e~~l~~l~-----------gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~------------  294 (459)
T KOG0272|consen  239 ADGTVKLWKLSQETPLQDLE-----------GHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS------------  294 (459)
T ss_pred             cCCceeeeccCCCcchhhhh-----------cchhhheeeeecCCC-ceeeecccccchhhcccccch------------
Confidence            37999999998876544443           588899999999999 999999999999999999886            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         ......+|...|.+++|.++|.++++| .|..-+|||++++                ..+..+.+|..+  |.+|+|
T Consensus       295 ---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg----------------r~im~L~gH~k~--I~~V~f  353 (459)
T KOG0272|consen  295 ---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG----------------RCIMFLAGHIKE--ILSVAF  353 (459)
T ss_pred             ---hhHhhcccccccceeEecCCCceeeccCccchhheeecccC----------------cEEEEecccccc--eeeEeE
Confidence               223338999999999999999999995 6999999999999                789999999966  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  237 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  237 (316)
                       +|+|..|++|+.|++++|||++..+.+.++++|..-|+.+.|+| .|.+|+|++.|++++||...+.. +..+.+|...
T Consensus       354 -sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k  432 (459)
T KOG0272|consen  354 -SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK  432 (459)
T ss_pred             -CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence             99999999999999999999999999999999999999999999 67779999999999999999887 8899999999


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      |+++. .++++..+++++.|.++++|.
T Consensus       433 V~s~D-is~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  433 VISLD-ISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEE-eccCCceEEEeccCceeeecc
Confidence            99988 889999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2e-37  Score=262.31  Aligned_cols=205  Identities=17%  Similarity=0.281  Sum_probs=188.6

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      ..||.++|..+.|+|+. ++|++++.|+++|+|.+.+..              +.... .+|..+|+.+.|+|-|-++|+
T Consensus       447 L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFat  510 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFAT  510 (707)
T ss_pred             eecCCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEe
Confidence            35999999999999999 999999999999999999886              33333 799999999999999999999


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                      + .|++.++|.....                ++.+.+.+|.+.  +.|+.| +|+..|+++||.|.+|++||+.+|..++
T Consensus       511 as~D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             cCCCceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEE
Confidence            5 6999999999887                799999999977  999999 9999999999999999999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      .|.||.++|.+++|+|+|++|++|+.|+.|++||+..+. +..+.+|...+.++. ++.++..+++++.|..|++||+..
T Consensus       572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls-FS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS-FSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE-EecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999999999999987 788899977666665 899999999999999999999876


Q ss_pred             cCc
Q 021160          268 RQT  270 (316)
Q Consensus       268 ~~~  270 (316)
                      ...
T Consensus       651 ~~~  653 (707)
T KOG0263|consen  651 VIE  653 (707)
T ss_pred             hcc
Confidence            533

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-36  Score=234.23  Aligned_cols=216  Identities=18%  Similarity=0.270  Sum_probs=191.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+....+...+.           ||..+|+|+.|--+|  ++++|+.|++|++|+...+.             
T Consensus       226 Dg~vrIWd~~~~~~~~~ls-----------gHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~-------------  279 (480)
T KOG0271|consen  226 DGSVRIWDTKLGTCVRTLS-----------GHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK-------------  279 (480)
T ss_pred             CCCEEEEEccCceEEEEec-----------cCccceEEEEEcCCc--eEEecCCCceEEEEEccchh-------------
Confidence            7899999998877644443           589999999998665  99999999999999999887             


Q ss_pred             cccccccCCCcccEEEEEEc-----------cCC-------------------------CeEEEe-cCCcEEEEEcCCCC
Q 021160           82 FCPRHLIGKNNIHITGLAYS-----------NTS-------------------------ELLISY-NDELVYLFEKNMGL  124 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~-----------~~~-------------------------~~l~s~-~d~~i~iwd~~~~~  124 (316)
                       +.+.+ .+|...|+.++.+           |.+                         +.|+++ .|.++.+|+.....
T Consensus       280 -~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k  357 (480)
T KOG0271|consen  280 -LCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK  357 (480)
T ss_pred             -HHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence             44444 8899999988877           222                         348886 68999999976542


Q ss_pred             CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160          125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP  204 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p  204 (316)
                                     +++..+.+|...  |+.+.| +||+.++++++.|..|++|+.++|+.+..|.+|-..|..++|+.
T Consensus       358 ---------------kpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa  419 (480)
T KOG0271|consen  358 ---------------KPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA  419 (480)
T ss_pred             ---------------cchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence                           577889999976  999999 99999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          205 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       205 ~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      |.++|++||.|.++++|++++++ ...+++|.++++... |++|+..+++++.|..+++|.
T Consensus       420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD-wspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD-WSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE-ecCCCceeecCCCceEEEeec
Confidence            99999999999999999999998 678999999998888 899999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-35  Score=219.04  Aligned_cols=225  Identities=15%  Similarity=0.189  Sum_probs=182.1

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++..+.+|++......      .....-++.||+..|..+..++++ ++.++++.|+++++||+.+++            
T Consensus        36 rDk~ii~W~L~~dd~~------~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~------------   96 (315)
T KOG0279|consen   36 RDKTIIVWKLTSDDIK------YGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE------------   96 (315)
T ss_pred             cceEEEEEEeccCccc------cCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCc------------
Confidence            4678899999876321      111122345799999999999999 999999999999999999886            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +...+ .+|...|.+++|+++.+.++++ .|.+|++|+....                 +..++..+.....|.|+.|
T Consensus        97 --~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf  156 (315)
T KOG0279|consen   97 --STRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF  156 (315)
T ss_pred             --EEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE
Confidence              33333 7999999999999999999996 6999999999775                 4444444432244999999


Q ss_pred             ecCC--CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          160 FGPN--DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       160 ~~~~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                       +|+  ..+|++++.|++|++||+++.+....+.+|++.++.++++|||..+++|+.||.+.+||++.++ +..+ ++..
T Consensus       157 -sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~  234 (315)
T KOG0279|consen  157 -SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFD  234 (315)
T ss_pred             -cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCC
Confidence             887  7899999999999999999999999999999999999999999999999999999999999988 4444 4666


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+..++ ++|+...++.+ .+..|++|++..+
T Consensus       235 ~v~sl~-fspnrywL~~a-t~~sIkIwdl~~~  264 (315)
T KOG0279|consen  235 IVNSLC-FSPNRYWLCAA-TATSIKIWDLESK  264 (315)
T ss_pred             eEeeEE-ecCCceeEeec-cCCceEEEeccch
Confidence            665665 67755455444 4555999998875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-34  Score=214.15  Aligned_cols=239  Identities=15%  Similarity=0.208  Sum_probs=200.6

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||++.|++++..+.++..+++++.|..+.+|++.....    +...+++.+      .+|...|..+..+++|++++++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~~r~~------~GHsH~v~dv~~s~dg~~alS~   81 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVPVRRL------TGHSHFVSDVVLSSDGNFALSA   81 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCceeeee------eccceEecceEEccCCceEEec
Confidence            479999999999999889999999999999999975531    112233333      7899999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|+++++||+.++                +..+.|.+|...  |.+++| +++.+.|++|+.|.+|++|+.. +.+..+
T Consensus        82 swD~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t  141 (315)
T KOG0279|consen   82 SWDGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYT  141 (315)
T ss_pred             cccceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEE
Confidence             7999999999998                788999999966  999999 9999999999999999999998 455555


Q ss_pred             eecC--ccceEEEEEcCC--CCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          190 MVGD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       190 ~~~~--~~~v~~~~~~p~--~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +..+  .+.|.++.|+|+  .++|++++.|++|++||+++.+ ...+.+|...+..+. .++|+.++++++.||.+++||
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~-vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT-VSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEE-ECCCCCEEecCCCCceEEEEE
Confidence            5433  789999999998  7889999999999999999998 566778887775555 999999999999999999999


Q ss_pred             ecccCccee--------E-EeecccccccccCCCCeEEEEeccCCC
Q 021160          265 LQRRQTLAY--------R-ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       265 ~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +..++.+-+        . .|+|....+...-+.+ |.+|++.++.
T Consensus       221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~  265 (315)
T KOG0279|consen  221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA  265 (315)
T ss_pred             ccCCceeEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence            998755322        1 6888888877654432 8999988764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.4e-34  Score=215.03  Aligned_cols=247  Identities=16%  Similarity=0.213  Sum_probs=202.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.+.|||..+......+.+.           ..-|..++|+|.+ +++|+|+.|....||++.+.+...         .
T Consensus        76 DGklIvWDs~TtnK~haipl~-----------s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------~  134 (343)
T KOG0286|consen   76 DGKLIVWDSFTTNKVHAIPLP-----------SSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------N  134 (343)
T ss_pred             CCeEEEEEcccccceeEEecC-----------ceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------c
Confidence            689999999887766666654           5579999999999 999999999999999998653100         0


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                      ........+|.+.+.|..|.+|+.+|.++.|.++.+||++++                +.++.|.+|...  |.++++ +
T Consensus       135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~  195 (343)
T KOG0286|consen  135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-S  195 (343)
T ss_pred             ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----------------eEEEEecCCccc--EEEEec-C
Confidence            012222389999999999999888887789999999999999                789999999977  999999 8


Q ss_pred             C-CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCc---cc
Q 021160          162 P-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA---EK  237 (316)
Q Consensus       162 ~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~  237 (316)
                      | +++.+++|+.|+..++||++.+.+.+.|.+|.+.|++++|.|+|.-|++|+.|++.|+||++..+...+..+.   .+
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g  275 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG  275 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence            8 9999999999999999999999999999999999999999999999999999999999999998733333233   33


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCC
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      +..++ ++..+++++++..|..+.+||.-.++..         ..+.+|+  +||-.+.++++
T Consensus       276 itSv~-FS~SGRlLfagy~d~~c~vWDtlk~e~v---------g~L~GHe--NRvScl~~s~D  326 (343)
T KOG0286|consen  276 ITSVA-FSKSGRLLFAGYDDFTCNVWDTLKGERV---------GVLAGHE--NRVSCLGVSPD  326 (343)
T ss_pred             ceeEE-EcccccEEEeeecCCceeEeeccccceE---------EEeeccC--CeeEEEEECCC
Confidence            44444 8889999999999999999998766443         3334333  33766666543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.8e-34  Score=209.85  Aligned_cols=223  Identities=14%  Similarity=0.267  Sum_probs=186.2

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .||+||++++++.++.+..         ||...|+++.|..+| +..++|++||+++|||++...              +
T Consensus        62 hvRlyD~~S~np~Pv~t~e---------~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~  117 (311)
T KOG0315|consen   62 HVRLYDLNSNNPNPVATFE---------GHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------C  117 (311)
T ss_pred             eeEEEEccCCCCCceeEEe---------ccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------c
Confidence            6899999999887777664         588999999999999 999999999999999999765              3


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  162 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  162 (316)
                      .+.+  .|..+|+++..+|+...|+++ .+|.|++||+...                .....+..... ..|.++.. .|
T Consensus       118 qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~  177 (311)
T KOG0315|consen  118 QRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MP  177 (311)
T ss_pred             chhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cC
Confidence            3322  456899999999987766665 7999999999875                23333322221 34899998 89


Q ss_pred             CCcEEEEeccCCeEEEEeccCC------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC-C-CCCCCCC
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGG------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-D-FPPLPDN  234 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~  234 (316)
                      +|.+++.+...|..++|++-..      +++..++.|.+-+..+.+||++++||++|.|.+++||+.... + ...+.+|
T Consensus       178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh  257 (311)
T KOG0315|consen  178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH  257 (311)
T ss_pred             CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence            9999999999999999998654      355677889999999999999999999999999999999887 3 4567788


Q ss_pred             cccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ...+..++ ++.|+++++++++|+..++|++..++..
T Consensus       258 ~rWvWdc~-FS~dg~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  258 QRWVWDCA-FSADGEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             CceEEeee-eccCccEEEecCCCCceeecccccCcee
Confidence            88887777 8999999999999999999999887543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.3e-33  Score=223.32  Aligned_cols=217  Identities=18%  Similarity=0.271  Sum_probs=187.0

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      -+..|++++|+.+| .+||+|+.||.+++|+.....               ...+ ..|.++|.++.|+..|.+|+++ .
T Consensus       234 ~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~tl-~~HkgPI~slKWnk~G~yilS~~v  296 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------ISTL-GQHKGPIFSLKWNKKGTYILSGGV  296 (524)
T ss_pred             ccCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhhh-hccCCceEEEEEcCCCCEEEeccC
Confidence            35689999999999 899999999999999987542               3333 7899999999999999988885 6


Q ss_pred             CCcEEEEEcCCCC-------------------------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcE
Q 021160          112 DELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  166 (316)
Q Consensus       112 d~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  166 (316)
                      |+++.+||..++.                         ......+.+..+....++.++.+|.++  |.++.| .|.+.+
T Consensus       297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~L  373 (524)
T KOG0273|consen  297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSL  373 (524)
T ss_pred             CccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCce
Confidence            9999999997664                         111122333334455688899999977  999999 999999


Q ss_pred             EEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCC---------eEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          167 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP---------MFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       167 l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~---------~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      |+++++|++++||....+.....+.+|...|..+.|+|+++         .+++++.|++|++||+..+. +..|..|..
T Consensus       374 LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~  453 (524)
T KOG0273|consen  374 LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE  453 (524)
T ss_pred             EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC
Confidence            99999999999999999999999999999999999999653         58999999999999999887 888989999


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +++.++ ++++++++++|+.|+.|++|+.++++.
T Consensus       454 pVysva-fS~~g~ylAsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  454 PVYSVA-FSPNGRYLASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             ceEEEE-ecCCCcEEEecCCCCeeEeccccchhe
Confidence            999888 899999999999999999999888744

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.7e-34  Score=220.34  Aligned_cols=251  Identities=17%  Similarity=0.230  Sum_probs=202.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +.+|+|||.++..+.+.+.           ||.+.|.|+.|..   +.+++|++|.+|++||+++++             
T Consensus       216 DnTikiWD~n~~~c~~~L~-----------GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge-------------  268 (499)
T KOG0281|consen  216 DNTIKIWDKNSLECLKILT-----------GHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE-------------  268 (499)
T ss_pred             cCceEEeccccHHHHHhhh-----------cCCCcEEeeeccc---eEEEecCCCceEEEEeccCCc-------------
Confidence            5689999998877766655           4899999999975   689999999999999999997             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +.+++ -+|...|..+.|+.  .++++ +.|.++.+||+....             .....+.+.||...  |+.+.| 
T Consensus       269 -~l~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf-  328 (499)
T KOG0281|consen  269 -PLNTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF-  328 (499)
T ss_pred             -hhhHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc-
Confidence             44444 68899999999974  36666 579999999998762             11345678899977  999988 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                        +.++|++++.|.+|++|++.+++.++++.+|...|.|+++  .++++++|+.|.+|++||+..+. +..+.+|.+-+.
T Consensus       329 --d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  329 --DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR  404 (499)
T ss_pred             --ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence              4669999999999999999999999999999999999988  68899999999999999999998 777888877663


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccCcc-----------------eeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------AYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ..   ..+...+++|..||.+++||+.....+                 ..+..+-+...+.+...+.++++|||.++-.
T Consensus       405 ci---RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  405 CI---RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             he---eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence            33   235679999999999999999875433                 1122233445555555556699999998876


Q ss_pred             CCCC
Q 021160          303 SSEG  306 (316)
Q Consensus       303 ~~~~  306 (316)
                      .+.+
T Consensus       482 ~~~~  485 (499)
T KOG0281|consen  482 SAAE  485 (499)
T ss_pred             cccc
Confidence            5433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=201.24  Aligned_cols=238  Identities=18%  Similarity=0.272  Sum_probs=196.0

Q ss_pred             CCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           31 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      +||++.+..++|+|- | .+||+++.|..|++|+...+.           ...|...+-.+|+..|.+++|+|.|++|++
T Consensus        11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vld~~hkrsVRsvAwsp~g~~La~   78 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGD-----------SWTCKTVLDDGHKRSVRSVAWSPHGRYLAS   78 (312)
T ss_pred             cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCC-----------cEEEEEeccccchheeeeeeecCCCcEEEE
Confidence            478999999999997 5 799999999999999998532           111555566789999999999999999999


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---e
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---K  185 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~---~  185 (316)
                      + -|.++.||.-..+              .++.+..+.||.++  |.+++| +++|++||+++.|+.|.||.+..+   +
T Consensus        79 aSFD~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfe  141 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFE  141 (312)
T ss_pred             eeccceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence            6 5999999987654              23577889999988  999999 999999999999999999998743   5


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-CCC---CCCCCCCcccceeeeecCCCCceeEEecCCCeEE
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  261 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  261 (316)
                      ++..+..|...|..+.|||...+|+++|.|.+|++|.-. ...   .+++.+|...+..++ +.+.+..+++++.|++++
T Consensus       142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGTVS  220 (312)
T ss_pred             EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcceE
Confidence            678889999999999999999999999999999999877 332   778888988887777 788889999999999999


Q ss_pred             EEEeccc-----CcceeE-EeecccccccccCCCCeEEEEeccCC
Q 021160          262 VLRLQRR-----QTLAYR-ERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       262 ~w~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      +|.....     ....|. .+.  ...+++...++.+.++.-+++
T Consensus       221 Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  221 IWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             eeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence            9995432     223332 222  456777777777777765543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=202.45  Aligned_cols=241  Identities=14%  Similarity=0.142  Sum_probs=198.5

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      +||...|.++.|+++. +.+++++.||.+.|||.-+..         .+..+      .--...|...+|+|.|++++++
T Consensus        52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn---------K~hai------pl~s~WVMtCA~sPSg~~VAcG  115 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN---------KVHAI------PLPSSWVMTCAYSPSGNFVACG  115 (343)
T ss_pred             cccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc---------ceeEE------ecCceeEEEEEECCCCCeEEec
Confidence            5899999999999998 999999999999999987664         11111      2235689999999999999995


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|....||++.+.....          ..+..+.+.+|+..  +.++.| .+ ...|++++.|.+..+||+++|+.+..
T Consensus       116 GLdN~Csiy~ls~~d~~g----------~~~v~r~l~gHtgy--lScC~f-~d-D~~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEG----------NVRVSRELAGHTGY--LSCCRF-LD-DNHILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             CcCceeEEEecccccccc----------cceeeeeecCccce--eEEEEE-cC-CCceEecCCCceEEEEEcccceEEEE
Confidence             69999999998541110          11345678899965  999998 44 66788999999999999999999999


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          190 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      |.+|.+.|.+++++| +++.+++|+-|+..++||++.+. .+++.+|...|-.+. +.|++.-+++++.|++.+++|++.
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~-ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVR-FFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEE-EccCCCeeeecCCCceeEEEeecC
Confidence            999999999999999 89999999999999999999987 889999999985555 889999999999999999999998


Q ss_pred             cCcceeE------------EeecccccccccCCCCeEEEEeccCCCC
Q 021160          268 RQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       268 ~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .+.+..+            .|+..+..+-.+-++..+.+||.-.++.
T Consensus       261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~  307 (343)
T KOG0286|consen  261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER  307 (343)
T ss_pred             CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence            6555443            3555566666666777788887655554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.2e-31  Score=196.59  Aligned_cols=255  Identities=15%  Similarity=0.258  Sum_probs=211.6

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++-+||+|...++.+...+.-.           .+.|+.+.+.|++ ..||+++. -.||+||+++++       +.|+.
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~-----------dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~n-------p~Pv~   77 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHP-----------DSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNN-------PNPVA   77 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecC-----------ccceeeEEEcCCc-chhhhccC-CeeEEEEccCCC-------CCcee
Confidence            4678999999999987766543           4579999999998 78888776 679999999887       55666


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      +|      .+|...|+++.|..+|+.++++ .||+++|||++..                ...+.+. +..+  |+++..
T Consensus        78 t~------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----------------~~qR~~~-~~sp--Vn~vvl  132 (311)
T KOG0315|consen   78 TF------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----------------SCQRNYQ-HNSP--VNTVVL  132 (311)
T ss_pred             EE------eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----------------ccchhcc-CCCC--cceEEe
Confidence            66      8899999999999999998885 7999999999986                3444444 5555  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-------CCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPL  231 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-------~~~~  231 (316)
                       +|+..-|++|..+|.|++||+....+...+. .....|.++...|+|.+++.+...|..++|++-...       +..+
T Consensus       133 -hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~  211 (311)
T KOG0315|consen  133 -HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF  211 (311)
T ss_pred             -cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence             8999999999999999999999876665553 344689999999999999999999999999986543       3456


Q ss_pred             CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc----------CcceeE-EeecccccccccCCCCeEEEEeccCC
Q 021160          232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR----------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      +.|...++.+. .++++.+++++++|.++++|+...-          +...+- .|+.++.++...+.++.+.+|+++.+
T Consensus       212 ~ah~~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  212 QAHNGHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             ecccceEEEEE-ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence            67777777776 8999999999999999999997653          223333 68999999999999999999999888


Q ss_pred             CC
Q 021160          301 DA  302 (316)
Q Consensus       301 ~~  302 (316)
                      ++
T Consensus       291 k~  292 (311)
T KOG0315|consen  291 KE  292 (311)
T ss_pred             ce
Confidence            75

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.4e-33  Score=218.33  Aligned_cols=251  Identities=11%  Similarity=0.146  Sum_probs=207.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.+.+|+..+-.-+-+..           .|..+|.++.|++++ .++++|..+|.|++|+..-..             
T Consensus       117 SGEFtLWNg~~fnFEtilQ-----------aHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn-------------  171 (464)
T KOG0284|consen  117 SGEFTLWNGTSFNFETILQ-----------AHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN-------------  171 (464)
T ss_pred             cccEEEecCceeeHHHHhh-----------hhcccceeEEEccCC-CEEEEcCCCceEEecccchhh-------------
Confidence            4667788774433322222           388999999999999 899999999999999987543             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        .+.+...|...|++++|+|....+++ +.|++|+|||....                +.-..+.+|.-.  |.+++| 
T Consensus       172 --Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW-  230 (464)
T KOG0284|consen  172 --VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW-  230 (464)
T ss_pred             --hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC----------------chhheeccCCCC--cceecc-
Confidence              22332456699999999997766666 57999999999887                677788999877  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      +|...+|++|+.|..|++||.++++++.++.+|+..|..+.|+|++++|+++|.|..++++|+++.+ +..+++|.+.+.
T Consensus       231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~  310 (464)
T KOG0284|consen  231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT  310 (464)
T ss_pred             CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence            8999999999999999999999999999999999999999999999999999999999999999655 889999999998


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccC----------cceeE-EeecccccccccCCCCeEEEEecc
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQ----------TLAYR-ERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      ...|.+....++.+++.||.+..|.+...+          ..++. .+-|-+.-+++++.+..+..|--.
T Consensus       311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            888666688899999999999999987322          22233 456667777778888778777543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-32  Score=225.71  Aligned_cols=223  Identities=15%  Similarity=0.161  Sum_probs=196.8

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|.|+||+..+..-.+.+...           ..+|.+..|-+.. +.+++|+.|..|++|+..+++            
T Consensus        33 ynG~V~IWnyetqtmVksfeV~-----------~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e------------   88 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTMVKSFEVS-----------EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE------------   88 (794)
T ss_pred             ecCeeEEEecccceeeeeeeec-----------ccchhhheeeecc-ceEEEecCCceEEEEecccce------------
Confidence            3589999999987777777664           4579999999988 899999999999999999986            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ....+ .+|.+.|.+++.+|...++.++ .|-+|++||.+..-               .+.++|.||...  |.+++|
T Consensus        89 --kV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---------------a~~qtfeGH~Hy--VMqv~f  148 (794)
T KOG0276|consen   89 --KVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---------------ACEQTFEGHEHY--VMQVAF  148 (794)
T ss_pred             --eeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCce---------------eeeeEEcCcceE--EEEEEe
Confidence              33333 8999999999999999877775 68899999998873               678999999966  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC--CeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      ++.|.+.+++++-|++|++|.+.+..+..++.+|...|+++.+-|.+  ++|++|+.|.+|+|||.+++. ++++.+|..
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~  228 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN  228 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence            77789999999999999999999999999999999999999998854  789999999999999999987 889999999


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+ +.+.+.++-.++++++.||++|+|+..+-
T Consensus       229 Nv-s~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  229 NV-SFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             cc-eEEEecCCCcEEEEecCCccEEEecCcce
Confidence            87 55558888899999999999999987653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-32  Score=232.83  Aligned_cols=226  Identities=17%  Similarity=0.276  Sum_probs=196.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|++||.+.......|.           .|.++|..++|||++ .+|++|+.|..|++|+..+.+             
T Consensus        30 sG~IQlWDYRM~tli~rFd-----------eHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr-------------   84 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGTLIDRFD-----------EHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR-------------   84 (1202)
T ss_pred             CceeeeehhhhhhHHhhhh-----------ccCCccceeeecCCC-CeEEecCCccEEEEEecccce-------------
Confidence            5899999999877654443           389999999999999 699999999999999999888             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       |..++ .+|-+.|..+.|++.-..++++ .|.+|+||+..++                +++..+.||...  |.|..| 
T Consensus        85 -clftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF-  143 (1202)
T KOG0292|consen   85 -CLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF-  143 (1202)
T ss_pred             -ehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-
Confidence             66666 8999999999999999888885 7999999999998                899999999966  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccC--------C---------------------eeEEEeecCccceEEEEEcCCCCeEEE
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKG--------G---------------------KLVRLMVGDRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~--------~---------------------~~~~~~~~~~~~v~~~~~~p~~~~l~s  211 (316)
                      +|....++++|-|.+|++||+..        +                     -..+.+.+|...|+-++|+|..+.|++
T Consensus       144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS  223 (1202)
T KOG0292|consen  144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS  223 (1202)
T ss_pred             CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence            89999999999999999999641        1                     012356789999999999999999999


Q ss_pred             EeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160          212 CGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       212 ~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~  274 (316)
                      |+.|+.|++|.....+   .-+.++|...+.++. +.+..+++++.+.|+++++||+.++.....+
T Consensus       224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl-fhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL-FHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             cCCcceeeEEEeccccceeehhhhcccCCcceEE-ecCccceeEecCCCccEEEEecccccceeee
Confidence            9999999999987765   667889999986666 7888889999999999999999887555444

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.6e-32  Score=231.47  Aligned_cols=248  Identities=16%  Similarity=0.193  Sum_probs=210.0

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC------C-----------CCCceecccccccCCCcccEE
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS------S-----------DTPVDTFCPRHLIGKNNIHIT   96 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~i~   96 (316)
                      ...++|..|++++ ..+|.|..|..|++|.+...++.+.-.      .           ..+......+. .-+|.++|.
T Consensus       378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~-L~GH~GPVy  455 (707)
T KOG0263|consen  378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT-LYGHSGPVY  455 (707)
T ss_pred             CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE-eecCCCcee
Confidence            3578999999999 799999999999999998543221100      0           00011111122 368999999


Q ss_pred             EEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe
Q 021160           97 GLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  175 (316)
Q Consensus        97 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  175 (316)
                      ...|+|+.++|+++ .|+++++|.+.+.                ..+-.++||..+  |+++.| +|-|-++|+++.|++
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQT  516 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCce
Confidence            99999999999996 6999999999988                678889999977  999999 899999999999999


Q ss_pred             EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEe
Q 021160          176 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL  254 (316)
Q Consensus       176 v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~  254 (316)
                      .++|.....++++.+.+|-+.|.|+.|||+..++++||.|.+||+||+.++. ++.+.+|..++..++ +++.+++++++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA-FSPCGRYLASG  595 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE-EcCCCceEeec
Confidence            9999999999999999999999999999999999999999999999999887 778889999997777 89999999999


Q ss_pred             cCCCeEEEEEecccC---------cceeE-EeecccccccccCCCCeEEEEeccCCCCC
Q 021160          255 TPDVIMHVLRLQRRQ---------TLAYR-ERRYNAADFESDEEEGETYLLGFSDSDAS  303 (316)
Q Consensus       255 ~~d~~~~~w~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  303 (316)
                      +.|+.|++||+..+.         ..++. .++.++..++++..+..|.+||+..-...
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            999999999998742         22333 89999999999999999999998765443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=203.72  Aligned_cols=234  Identities=17%  Similarity=0.225  Sum_probs=199.1

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  109 (316)
                      .||++.|+.+.|+|+| .+||+|+.|..|.+|++....              .-.....+|.+.|..+.|.+++..+++ 
T Consensus        44 ~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~  108 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILSC  108 (338)
T ss_pred             CCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEEe
Confidence            5899999999999998 899999999999999976432              122233799999999999999998887 


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      +.|++|+.||.+++                +..+.+++|..-  +.++.-......++.+++.|+++++||+++...+++
T Consensus       109 gtDk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t  170 (338)
T KOG0265|consen  109 GTDKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT  170 (338)
T ss_pred             cCCceEEEEecccc----------------eeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence            57999999999999                788999999865  777764223455778899999999999999988888


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +.. +-.++++.|..++..+.+|+-|+.|++||++... ...+.+|.+.|..+. .++++.++++-+-|.++++||++.-
T Consensus       171 ~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~ls-ls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  171 FEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLS-LSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             ccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEE-eccCCCccccccccceEEEEEeccc
Confidence            753 4578999999999999999999999999999887 888999999997777 8899999999999999999998742


Q ss_pred             ------------------CcceeEEeecccccccccCCCCeEEEEeccC
Q 021160          269 ------------------QTLAYRERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       269 ------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                                        ..+....++|+...+..+..+.-+|+||...
T Consensus       249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence                              2223346889999999999998999999765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=208.49  Aligned_cols=235  Identities=17%  Similarity=0.284  Sum_probs=197.1

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  109 (316)
                      +||.+-|.|+++.|-+ .+|++|+.|++++|||+.++++              ..+ ..+|...|..+++++-..++++ 
T Consensus       148 ~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L--------------klt-ltGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL--------------KLT-LTGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE--------------EEe-ecchhheeeeeeecccCceEEEe
Confidence            5899999999999987 8999999999999999999973              223 3889999999999998888888 


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      +.|++|+.||++..                +.++.+.||-..  |.+++. .|.-..|++|+.|.++++||+++...+..
T Consensus       212 gedk~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~  272 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHV  272 (460)
T ss_pred             cCCCeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEE
Confidence            57999999999988                799999999977  999999 88899999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +.+|..+|.++.+.|..+.+++||.|++|++||++.++ ..++..|...+..++ ..|....+++++.|. ++-|++..+
T Consensus       273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~-lhP~e~~fASas~dn-ik~w~~p~g  350 (460)
T KOG0285|consen  273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC-LHPKENLFASASPDN-IKQWKLPEG  350 (460)
T ss_pred             ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe-cCCchhhhhccCCcc-ceeccCCcc
Confidence            99999999999999999999999999999999999888 677776766665555 666666777777764 577887765


Q ss_pred             Cccee---------EEeecccccccccCCCCeEEEEeccCCCC
Q 021160          269 QTLAY---------RERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       269 ~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .....         .........+.++.+.|.++.||..++-.
T Consensus       351 ~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  351 EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence            33322         11222334455677888888898887753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-30  Score=225.08  Aligned_cols=236  Identities=18%  Similarity=0.318  Sum_probs=202.0

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      |...|.++.|+|+| ..+++++.++.+++|+....+.            .....+ .+|...|.+++|+|++++++++ .
T Consensus       158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------------hhhccc-cccccceeeeEECCCCcEEEEecC
Confidence            47789999999999 7899999999999999965541            012222 7899999999999999998885 7


Q ss_pred             CCcEEEEEc-CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          112 DELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       112 d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      |++|++||+ ..+                ..++++.+|...  |++++| +|+++++++|+.|++|++||+++++++..+
T Consensus       224 D~tiriwd~~~~~----------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  224 DKTLRIWDLKDDG----------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             CceEEEeeccCCC----------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence            999999999 443                578999999977  999999 899999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCCCCCCccc-ceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      .+|.+.|++++|++++.+|++++.|+.|++||+.++.   ...+.++... .....++++++.+++++..|+.+++|++.
T Consensus       285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            9999999999999999999999999999999999988   3466666666 56777799999999999999999999998


Q ss_pred             ccCcc-----------eeE--EeecccccccccCCCCeEEEEeccCCC
Q 021160          267 RRQTL-----------AYR--ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       267 ~~~~~-----------~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .....           .+.  ...+.+..+.++..++.|++|+.+.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence            64221           111  345577888889999999999998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.7e-31  Score=203.95  Aligned_cols=248  Identities=16%  Similarity=0.238  Sum_probs=205.9

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++++++|||+.+++.+..+.           ||...|..+++++.. .|+++++.|++|+.||++..+            
T Consensus       171 ~DrtikIwDlatg~Lkltlt-----------Ghi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nk------------  226 (460)
T KOG0285|consen  171 ADRTIKIWDLATGQLKLTLT-----------GHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNK------------  226 (460)
T ss_pred             CCceeEEEEcccCeEEEeec-----------chhheeeeeeecccC-ceEEEecCCCeeEEEechhhh------------
Confidence            57899999999987754443           478899999999988 699999999999999999887            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        .++.. .+|-..|.|++.+|.-..|+++ .|.++++||+++.                ..+..+.||.+.  |.++.+
T Consensus       227 --vIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~  285 (460)
T KOG0285|consen  227 --VIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC  285 (460)
T ss_pred             --hHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeeccc----------------ceEEEecCCCCc--ceeEEe
Confidence              34444 7899999999999998888885 7999999999998                789999999977  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                       .|....+++|+.|++|++||+..|+....+..|...|.+++.+|....||+++.| .|+-|++..+. +..+.+|...+
T Consensus       286 -~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  286 -QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII  363 (460)
T ss_pred             -ecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence             6777789999999999999999999999999999999999999999999999976 68999999887 77788787766


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEecccCcce-----------------eE-EeecccccccccCCCCeEEEEec
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA-----------------YR-ERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      ..+.  ..++..+++|+..|.+.+||-+.+..-.                 +. ++...+..+.+++.+..|-+|.-
T Consensus       364 ntl~--~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  364 NTLS--VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             eeee--eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            5554  2345689999999999999987753221                 11 34445555566666666666543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.5e-31  Score=220.93  Aligned_cols=252  Identities=15%  Similarity=0.262  Sum_probs=201.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|++.||+.++....-..           -||...+++++++|+| +++|+|+.||+|+|||..++-             
T Consensus       329 lgQLlVweWqsEsYVlKQ-----------QgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf-------------  383 (893)
T KOG0291|consen  329 LGQLLVWEWQSESYVLKQ-----------QGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF-------------  383 (893)
T ss_pred             cceEEEEEeeccceeeec-----------cccccceeeEEECCCC-cEEEeccCCCcEEEEeccCce-------------
Confidence            478999998775442222           2588999999999999 899999999999999999875             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       |..++ ..|+..|+.+.|+..|+.+++ +.||+|+.||+...                ...++|..... ....|++. 
T Consensus       384 -C~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav-  443 (893)
T KOG0291|consen  384 -CFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV-  443 (893)
T ss_pred             -EEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-
Confidence             66666 889999999999999997777 57999999999776                56666664432 23678887 


Q ss_pred             cCCCcEEEEeccCC-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC--CCCCCCCCccc
Q 021160          161 GPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEK  237 (316)
Q Consensus       161 ~~~~~~l~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~  237 (316)
                      .|.|..+.+|+.|. .|++|++++|+++-.+.+|.++|.+++|+|.+..|+++|.|++||+||+-..  ...++. +...
T Consensus       444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sd  522 (893)
T KOG0291|consen  444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSD  522 (893)
T ss_pred             cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccc
Confidence            89999999998766 5999999999999999999999999999999999999999999999998665  344444 4455


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcc------------------------------eeEEeecccccccccC
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------------------------AYRERRYNAADFESDE  287 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~------------------------------~~~~~~~~~~~~~~~~  287 (316)
                      ++... +.|++..++..+-||.|.+||.+...+.                              ...+.++++..+..++
T Consensus       523 vl~vs-frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  523 VLAVS-FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             eeEEE-EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence            65666 8899999999999999999998653222                              1114566666666666


Q ss_pred             CCCeEEEEeccCC
Q 021160          288 EEGETYLLGFSDS  300 (316)
Q Consensus       288 ~~~~v~~~~~~~~  300 (316)
                      ....+.+++...+
T Consensus       602 ~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  602 ESNSICIYDVPEG  614 (893)
T ss_pred             CcccEEEEECchh
Confidence            6666666665443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=225.72  Aligned_cols=262  Identities=15%  Similarity=0.209  Sum_probs=205.7

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      +.+|++++.+..+. ++           .||...|.++....+| -+|++|+.|.++++|.++.+...          ..
T Consensus       346 ~~lr~y~~~~~~c~-ii-----------~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~----------~~  402 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQ-II-----------PGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSK----------SL  402 (775)
T ss_pred             CceEEEecCCCceE-EE-----------eCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcch----------hh
Confidence            45677766665553 22           3699999999965666 79999999999999999544311          11


Q ss_pred             ccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      +. ....+|...|.+++++..+. +|++ +.|.++++|++....... .      ............|.  +.|+++++ 
T Consensus       403 ~~-a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~-~------~~~~~~~~t~~aHd--KdIN~Vai-  471 (775)
T KOG0319|consen  403 CV-AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA-F------PIVLTCRYTERAHD--KDINCVAI-  471 (775)
T ss_pred             hh-hhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc-c------cceehhhHHHHhhc--ccccceEe-
Confidence            22 23378999999999987774 8888 579999999997621000 0      00001112334566  44999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      +|+..+++|||.|++.++|+++.......+.+|+..|.++.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...+.
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl  551 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL  551 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999987 899999999997


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEeccc---------CcceeE-EeecccccccccCCCCeEEEEeccC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRR---------QTLAYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      ... +-.++..+++++.||.+++|++++.         +-.++. .-.+....+.+++.+|++.+|.-..
T Consensus       552 ra~-F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  552 RAS-FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eee-eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            776 7788899999999999999999874         333444 4555666778888899998885433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8e-32  Score=212.51  Aligned_cols=245  Identities=16%  Similarity=0.246  Sum_probs=199.6

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      +.+|..+.|.|+| +.|++|+..|.+.+|+..+-               ....+...|..+|.++.|++++.+++++ .+
T Consensus        96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g  159 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG  159 (464)
T ss_pred             ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence            4589999999999 99999999999999998533               3455568999999999999999999997 69


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      |.|++|+....                 .++.+..|. ..  |++++| +|+...++++++||+|+|||....+....+.
T Consensus       160 G~iKyWqpnmn-----------------nVk~~~ahh~ea--IRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~  219 (464)
T KOG0284|consen  160 GMIKYWQPNMN-----------------NVKIIQAHHAEA--IRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR  219 (464)
T ss_pred             ceEEecccchh-----------------hhHHhhHhhhhh--hheecc-CCCCceeEEecCCCeEEEEeccCCchhheec
Confidence            99999998765                 556666665 44  999999 8999999999999999999999888888899


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc-C
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR-Q  269 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~-~  269 (316)
                      +|.-.|.+++|||....+|++|.|..|++||.+++. +.++.+|...|+.+. |.+++++|++++.|..++++|+++- +
T Consensus       220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHH
Confidence            999999999999999999999999999999999987 889999999998887 7888899999999999999999832 1


Q ss_pred             --------cceeE-Eeeccc-ccccccCCCCeEEEEeccCCCCCCCCCCcceeeec
Q 021160          270 --------TLAYR-ERRYNA-ADFESDEEEGETYLLGFSDSDASSEGGGNQRECII  315 (316)
Q Consensus       270 --------~~~~~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  315 (316)
                              +-+.. ++.|.. ..+.++..+|.|+.+.+.-.+.-.+-......|+|
T Consensus       299 l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iw  354 (464)
T KOG0284|consen  299 LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIW  354 (464)
T ss_pred             HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccccee
Confidence                    11111 344433 44556677888888877633332233334444544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-32  Score=209.35  Aligned_cols=223  Identities=17%  Similarity=0.216  Sum_probs=199.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ++++++||..+++....++           ||...|.+++|+..| .++++++.|-.+++||..+...            
T Consensus       129 d~tikv~D~~tg~~e~~Lr-----------GHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~------------  184 (406)
T KOG0295|consen  129 DATIKVFDTETGELERSLR-----------GHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFR------------  184 (406)
T ss_pred             CceEEEEEccchhhhhhhh-----------ccccceeEEEEecCc-cEEEecCCccchhheeHHHHHH------------
Confidence            5789999999888755544           578899999999999 9999999999999999986320            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       |.+.+ .+|...|.++.|-|.|.+++++ .|.+|+.|++.++                ..+++|.+|...  +..+.. 
T Consensus       185 -c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----------------~cv~t~~~h~ew--vr~v~v-  243 (406)
T KOG0295|consen  185 -CIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----------------YCVKTFPGHSEW--VRMVRV-  243 (406)
T ss_pred             -HHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccc----------------eeEEeccCchHh--EEEEEe-
Confidence             44444 7899999999999999988885 7999999999999                799999999976  999998 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC---------------CCeEEEEeCCCcEEEecCCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH---------------IPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~s~~~d~~i~iwd~~~  225 (316)
                      ..||.++++++.|.++++|-+.++++...+..|..+|-+++|.|.               ++++++++.|++|++||+.+
T Consensus       244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            899999999999999999999999999999999999999999873               24799999999999999999


Q ss_pred             CC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          226 TD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +. +.++.+|.+.+...+ +++.|.+++++..|+++++||++.++-
T Consensus       324 g~cL~tL~ghdnwVr~~a-f~p~Gkyi~ScaDDktlrvwdl~~~~c  368 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVA-FSPGGKYILSCADDKTLRVWDLKNLQC  368 (406)
T ss_pred             CeEEEEEecccceeeeeE-EcCCCeEEEEEecCCcEEEEEecccee
Confidence            88 889999999998887 899999999999999999999998754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-30  Score=224.54  Aligned_cols=226  Identities=18%  Similarity=0.332  Sum_probs=187.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCC-cccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~-~~~~~~~~~~~~~   80 (316)
                      ++.+++|++...+. ...  ..      ..+|...|++++|+|++ .++++++.|++|++||+... .            
T Consensus       180 ~~~i~~~~~~~~~~-~~~--~~------l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~------------  237 (456)
T KOG0266|consen  180 DGLIRIWKLEGIKS-NLL--RE------LSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR------------  237 (456)
T ss_pred             CCcEEEeecccccc-hhh--cc------ccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe------------
Confidence            56788888854442 011  11      13589999999999999 89999999999999999433 3            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +.+.+ .+|...|++++|+|++++++++ .|++|++||++++                ++...+.+|...  |.+++|
T Consensus       238 --~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f  296 (456)
T KOG0266|consen  238 --NLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF  296 (456)
T ss_pred             --EEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE
Confidence              44444 7999999999999999988886 7999999999998                799999999977  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCe--eEEEeecCccc--eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~--v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                       ++++.+|++++.|+.|++||+.+++  +...+..+...  +++++|+|++.++++++.|+.+++||+.... .....+|
T Consensus       297 -~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~  375 (456)
T KOG0266|consen  297 -SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH  375 (456)
T ss_pred             -CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence             9999999999999999999999999  56777766654  9999999999999999999999999999776 6666677


Q ss_pred             cccc--eeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          235 AEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       235 ~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ...+  .......+.+.++++++.|+.|.+|++.++...
T Consensus       376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~  414 (456)
T KOG0266|consen  376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL  414 (456)
T ss_pred             CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence            6653  222223558899999999999999999875443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.6e-31  Score=210.21  Aligned_cols=232  Identities=13%  Similarity=0.186  Sum_probs=187.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC-C--
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT-P--   78 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~-~--   78 (316)
                      +|.+++|+...... ..+..           |+++|.++.|+..| ++|++++.|+++.+||..++.+.+...... +  
T Consensus       256 ~G~~riw~~~G~l~-~tl~~-----------HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l  322 (524)
T KOG0273|consen  256 DGEARIWNKDGNLI-STLGQ-----------HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL  322 (524)
T ss_pred             CcEEEEEecCchhh-hhhhc-----------cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence            68999999866432 23322           89999999999999 999999999999999998877654321100 0  


Q ss_pred             -c-----------------eec-----ccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCcc
Q 021160           79 -V-----------------DTF-----CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPE  134 (316)
Q Consensus        79 -~-----------------~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  134 (316)
                       |                 ..+     .+.....+|...|.++.|+|.|.+|+++ .|++++||.....           
T Consensus       323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----------  391 (524)
T KOG0273|consen  323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----------  391 (524)
T ss_pred             ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----------
Confidence             0                 000     0111225799999999999999999995 7999999998776           


Q ss_pred             ccccCCCcceeeCCcCCceeeeEEEecCC---------CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC
Q 021160          135 DLQKREEPQVYSGHRNSQTVKGVNFFGPN---------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH  205 (316)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~  205 (316)
                           .....+.+|...  |..+.| +|.         +..+++++.|++|++||+..+.++..|..|..+|.+++|+|+
T Consensus       392 -----~~~~~l~~Hske--i~t~~w-sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  392 -----NSVHDLQAHSKE--IYTIKW-SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             -----cchhhhhhhccc--eeeEee-cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence                 577888899865  999988 775         447999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          206 IPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       206 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ++++|+|+.||.|.+|+.+.+++..-......+..+. |..++..+...-.|+.+.+.|++
T Consensus       464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~-Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELC-WNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEE-EcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999998544444455566666 77777888888899999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=3.8e-31  Score=222.77  Aligned_cols=231  Identities=15%  Similarity=0.152  Sum_probs=196.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +..|++|.++.+.. +.......      .||...|.+++++..+..+|++++.|+++++|++...+..     ..|+. 
T Consensus       386 D~svilWr~~~~~~-~~~~~a~~------~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-----~~~~~-  452 (775)
T KOG0319|consen  386 DKSVILWRLNNNCS-KSLCVAQA------NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-----AFPIV-  452 (775)
T ss_pred             CceEEEEEecCCcc-hhhhhhhh------cccccccceeeecccCccEEEEecCCceEEEecCCCcccc-----cccce-
Confidence            46899999954433 33333222      2699999999999999899999999999999999873311     11222 


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      +........|...|++++++|+.++++++ .|++.+||+++..                ....++.||+-+  ++++.| 
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F-  513 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF-  513 (775)
T ss_pred             ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------------eEEEEeeCCccc--eEEEEe-
Confidence            22233346799999999999999999996 6999999999977                688999999966  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      ++..+.++++|.|++|+||.+.+..++.++.+|+..|..++|-.+++.|++++.||.|++|++.++. ..++..|.+.+.
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999987 899999999998


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEe
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .+. ..+....+++++.||.+.+|.=
T Consensus       594 aL~-~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  594 ALS-VSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             EEe-ecCccceeEecCCCeEEEEeec
Confidence            887 5666669999999999999953

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=202.48  Aligned_cols=198  Identities=14%  Similarity=0.219  Sum_probs=177.6

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||...|.+++|-|.| .++++++.|.+|+.|++.++.              |..++ .+|...|..++.+.||.+++++
T Consensus       190 ~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  190 IGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             cCcccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEec
Confidence            3688899999999999 999999999999999999997              56666 8899999999999999999995


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC---------------CCcEEEEeccCC
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---------------NDEYVMSGSDCG  174 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~l~~~~~dg  174 (316)
                       .|.++++|-+.++                .....+..|...  |.+++| .|               .++++.+++.|+
T Consensus       254 s~dqtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  254 SNDQTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             CCCceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccc
Confidence             7999999999887                677888889877  999988 43               236999999999


Q ss_pred             eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEE
Q 021160          175 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRIT  253 (316)
Q Consensus       175 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s  253 (316)
                      +|++||+.++.++.++.+|...|..++|+|.|++|+++..|+++++||+++.+ ..++..|..-+..+. +..+..++++
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD-fh~~~p~VvT  393 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD-FHKTAPYVVT  393 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe-cCCCCceEEe
Confidence            99999999999999999999999999999999999999999999999999987 777777777665555 7777779999


Q ss_pred             ecCCCeEEEEE
Q 021160          254 LTPDVIMHVLR  264 (316)
Q Consensus       254 ~~~d~~~~~w~  264 (316)
                      |+-|.++++|.
T Consensus       394 GsVdqt~KvwE  404 (406)
T KOG0295|consen  394 GSVDQTVKVWE  404 (406)
T ss_pred             ccccceeeeee
Confidence            99999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=5.9e-31  Score=211.73  Aligned_cols=217  Identities=14%  Similarity=0.200  Sum_probs=180.3

Q ss_pred             CceeeEEEEeeCC-CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            1 MVLFNMLFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         1 ~~g~v~vwd~~~~-~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      |+|.|+||++... ++.+.+           .||+.+|.+++|+++| ..|++++.|+.|++||+++|++.         
T Consensus       235 mD~~vklW~vy~~~~~lrtf-----------~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~---------  293 (503)
T KOG0282|consen  235 MDGLVKLWNVYDDRRCLRTF-----------KGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVL---------  293 (503)
T ss_pred             CCceEEEEEEecCcceehhh-----------hcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEE---------
Confidence            7899999999873 343333           3589999999999999 89999999999999999999843         


Q ss_pred             eecccccccCCCcccEEEEEEccCC-C-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTS-E-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                           ..+  .....++|+.|+|++ + +|+++.|+.|+.||++++                +.++.+..|-..  |..+
T Consensus       294 -----~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i  348 (503)
T KOG0282|consen  294 -----SRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDI  348 (503)
T ss_pred             -----EEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------------HHHHHHHhhhhh--eeee
Confidence                 222  124567899999998 4 555568999999999999                899999988866  9999


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEE----------------------------------------------Eee
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------LMV  191 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~----------------------------------------------~~~  191 (316)
                      .| -++|.++++.++|+.+++|+.+.+-.+.                                              .+.
T Consensus       349 ~F-~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe  427 (503)
T KOG0282|consen  349 TF-VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE  427 (503)
T ss_pred             EE-ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence            99 7899999999999999999976543221                                              233


Q ss_pred             cCc--cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          192 GDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       192 ~~~--~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +|.  +--..+.|||||.+|++|+.||.+.+||.++.+ +..+..|...++...|.+.+...+++++-+|.|++|+
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            444  334568999999999999999999999999887 7788889888888886666899999999999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.2e-30  Score=189.66  Aligned_cols=253  Identities=13%  Similarity=0.162  Sum_probs=193.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      |.+.|-++...+....+.....         ...+..++|++...+.+++++.||.+++||+....        .|+..+
T Consensus        38 G~L~ile~~~~~gi~e~~s~d~---------~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------~Pi~~~  100 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSYDT---------EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------KPIHKF  100 (311)
T ss_pred             ceEEEEecCCCCCeEEEEeeec---------ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------cchhHH
Confidence            6777888764444444443322         45799999999887899999999999999965433        234433


Q ss_pred             ccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                            +.|...|.++.|++..+  ++.++-|++|++|+...+                +.++++.+|...  |....|+
T Consensus       101 ------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~s  156 (311)
T KOG0277|consen  101 ------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFS  156 (311)
T ss_pred             ------HhhhhheEEeccccccceeEEeeccCCceEeecCCCC----------------cceEeecCCccE--EEEEecC
Confidence                  78999999999999765  444457999999999888                788999999966  9999996


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC--CCCCCCCccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD--FPPLPDNAEK  237 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~  237 (316)
                      +..++++++++.|+.+++||++..-....++.|...|.++.|+.-. +.++||+.|+.||.||++..+  +..+.+|.-.
T Consensus       157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            6678899999999999999988643334488999999999999855 458999999999999999876  7778889888


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE-----------Eeec-ccccccccCCCCeEEEEe
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRY-NAADFESDEEEGETYLLG  296 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~v~~~~  296 (316)
                      +..+.+.+....++++++.|-++++||...+....-.           ++++ ....+++..=|+.+|+|+
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            8777744446789999999999999998865333110           1211 334455555555566664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=185.52  Aligned_cols=232  Identities=16%  Similarity=0.234  Sum_probs=196.1

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      .|.++|.++.|+-+| +|.++++.|.+|++|+...+.              ++++. .+|...|..++.+.|+..+++ +
T Consensus        15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~--------------liktY-sghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGA--------------LIKTY-SGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             ccccceEEEEEccCC-CEEEEcCCCceEEeecccccc--------------eeeee-cCCCceeeeccccccccccccCC
Confidence            478999999999999 999999999999999999886              34443 899999999999999987777 5


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC--CeeEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLVR  188 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~--~~~~~  188 (316)
                      .|+.+.+||+.++                +..+.+.+|...  |+.+.| +.+...+++|+.|..+++||.++  .++++
T Consensus        79 gDk~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQ  139 (307)
T KOG0316|consen   79 GDKAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQ  139 (307)
T ss_pred             CCceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccc
Confidence            8999999999999                899999999977  999999 88999999999999999999774  57788


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+......|.++...  +..|++|+.||++|.||++.+.+..-. ...++ ....++++++..+.++-|+++++.|-.++
T Consensus       140 ildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pi-t~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  140 ILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPI-TSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             hhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcc-eeEEecCCCCEEEEeeccceeeecccchh
Confidence            888888899999885  446999999999999999998743321 23344 44558999999999999999999998876


Q ss_pred             Ccce---------eE---EeecccccccccCCCCeEEEEeccCCCC
Q 021160          269 QTLA---------YR---ERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       269 ~~~~---------~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      +.+.         |.   ........+.+++++|.||+||+.++..
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence            4442         22   3445567788899999999999988754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.9e-29  Score=196.43  Aligned_cols=262  Identities=11%  Similarity=0.164  Sum_probs=199.6

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC--cEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      ++|.+++||+... ..+.+.           ||.++|.+++|.-.++  ..|++++.|.++++|..+.++....      
T Consensus       123 YDg~~riWd~~Gk-~~~~~~-----------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~------  184 (423)
T KOG0313|consen  123 YDGTSRIWDLKGK-SIKTIV-----------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK------  184 (423)
T ss_pred             cCCeeEEEecCCc-eEEEEe-----------cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh------
Confidence            5899999998654 333332           5899999888854431  3699999999999999987753211      


Q ss_pred             ceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccC---------CccccccCCCcceeeCC
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSL---------SPEDLQKREEPQVYSGH  148 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  148 (316)
                          +.. ...+|...|.+++..++|..++++ .|.+|.+|+.........-..         .-....++.++-.+.+|
T Consensus       185 ----~~~-~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  185 ----ALK-VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             ----HHh-HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence                111 114999999999999999988886 699999999433211000000         00112234567788999


Q ss_pred             cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-
Q 021160          149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-  227 (316)
Q Consensus       149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-  227 (316)
                      ..+  |.++.| ++ ...+++++.|.+|+.||+.++..+..+.+. ...+++..+|..++|++|+.|..|++||++++. 
T Consensus       260 t~~--Vs~V~w-~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  260 TEP--VSSVVW-SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             ccc--eeeEEE-cC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            977  999999 55 778999999999999999999999888754 578999999999999999999999999999875 


Q ss_pred             ---CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCC
Q 021160          228 ---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       228 ---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                         .+++.+|...+..+.|.+.+...+++++.|+++++||++....+        ...+..+++.  |+.+|...+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p--------lydI~~h~DK--vl~vdW~~~  400 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP--------LYDIAGHNDK--VLSVDWNEG  400 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--------ceeeccCCce--EEEEeccCC
Confidence               56778999988777754457788999999999999999988766        3455555555  777777655

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.4e-28  Score=180.24  Aligned_cols=223  Identities=14%  Similarity=0.176  Sum_probs=178.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +..|++|++.+...-.+....       +-+|+..|.+++|+|.| ++|++|+.|.++.||.-..++..           
T Consensus        36 Dk~vriw~~~~~~s~~ck~vl-------d~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efe-----------   96 (312)
T KOG0645|consen   36 DKAVRIWSTSSGDSWTCKTVL-------DDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFE-----------   96 (312)
T ss_pred             CceEEEEecCCCCcEEEEEec-------cccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCcee-----------
Confidence            356899998853322222111       12589999999999999 89999999999999987766421           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       |...+ .+|...|.+++|+++|++||++ .|+.|-||.+....             .......+.+|...  |..+.| 
T Consensus        97 -cv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-------------Efec~aVL~~HtqD--VK~V~W-  158 (312)
T KOG0645|consen   97 -CVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-------------EFECIAVLQEHTQD--VKHVIW-  158 (312)
T ss_pred             -EEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-------------cEEEEeeecccccc--ccEEEE-
Confidence             33333 8999999999999999999996 69999999987441             11466778899966  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK  237 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  237 (316)
                      +|...+|++++.|.+|++|.-.   .-++.+++.+|...|.+++|+|.|..|++++.|++++||.....-.   ..|..+
T Consensus       159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~  235 (312)
T KOG0645|consen  159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRA  235 (312)
T ss_pred             cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccc
Confidence            8999999999999999999876   3468899999999999999999999999999999999999663221   125566


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ++.+.|.   ...+++++.|+.++++.-..
T Consensus       236 ~Y~v~W~---~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  236 LYDVPWD---NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             eEeeeec---ccceEeccCCCEEEEEEecC
Confidence            7667754   45899999999999997653

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.8e-28  Score=210.89  Aligned_cols=228  Identities=10%  Similarity=0.085  Sum_probs=165.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|++|++.....  +..         ..+|.++|.+++|+|+.+.+|++|+.|+.|++||+.++..... ....+   
T Consensus        53 ~gvI~L~~~~r~~~--v~~---------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p---  117 (568)
T PTZ00420         53 IGAIRLENQMRKPP--VIK---------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDP---  117 (568)
T ss_pred             eeEEEeeecCCCce--EEE---------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccc---
Confidence            45667776654322  211         2368999999999997448999999999999999986431000 00011   


Q ss_pred             cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         .....+|...|.+++|+|++. +|++ +.|++|++||++++                .....+. +...  |.+++|
T Consensus       118 ---~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw  175 (568)
T PTZ00420        118 ---QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW  175 (568)
T ss_pred             ---eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE
Confidence               112368899999999999987 4556 57999999999887                4444454 3434  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE-----EEcCCCCeEEEEeCCC----cEEEecCCCC-C-C
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL-----EPHPHIPMFATCGIEK----TVKLWAPMPT-D-F  228 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~-----~~~p~~~~l~s~~~d~----~i~iwd~~~~-~-~  228 (316)
                       +++|.+|++++.|+.|++||+++++.+..+.+|.+.+...     .|++++.+|++++.|+    .|+|||++.. . +
T Consensus       176 -spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl  254 (568)
T PTZ00420        176 -NIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL  254 (568)
T ss_pred             -CCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce
Confidence             9999999999999999999999999999999998765432     3458889999888774    7999999853 3 2


Q ss_pred             CCC--CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          229 PPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       229 ~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ..+  ..+...+ ...+.+.++.++++|+.|+.+++|++..+
T Consensus       255 ~~~~ld~~~~~L-~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        255 VTMSIDNASAPL-IPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEEecCCccce-EEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            222  1222222 22323456888999999999999998765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=5.9e-28  Score=197.13  Aligned_cols=221  Identities=20%  Similarity=0.333  Sum_probs=183.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...+..+.|+|++ +++++++.+|.|++|++.+++             
T Consensus        30 ~g~i~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~-------------   84 (289)
T cd00200          30 DGTIKVWDLETGELLRTLK-----------GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGE-------------   84 (289)
T ss_pred             CcEEEEEEeeCCCcEEEEe-----------cCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCccc-------------
Confidence            5889999998776433333           267788999999998 899999999999999998764             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEec-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ....+ ..|...+.++.|++++++++++. ++.|.+||+.+.                +....+..|...  +.+++| 
T Consensus        85 -~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-  143 (289)
T cd00200          85 -CVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF-  143 (289)
T ss_pred             -ceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-
Confidence             22222 46777899999999988888875 999999999866                566677777755  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      +|++.++++++.++.+++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||++..+ ...+..+...+.
T Consensus       144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~  223 (289)
T cd00200         144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN  223 (289)
T ss_pred             cCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceE
Confidence            8889999999889999999999999998998998899999999999999999999999999998766 555556776776


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .+. +.+++.++++++.++.+++|++.++.
T Consensus       224 ~~~-~~~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         224 SVA-FSPDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             EEE-EcCCCcEEEEEcCCCcEEEEEcCCce
Confidence            665 66778888888889999999988643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.9e-28  Score=223.33  Aligned_cols=250  Identities=14%  Similarity=0.138  Sum_probs=190.4

Q ss_pred             ceeeEEEEeeCCCc------ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCC
Q 021160            2 VLFNMLFDLRSDSA------TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS   75 (316)
Q Consensus         2 ~g~v~vwd~~~~~~------~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~   75 (316)
                      +|.|+|||+.....      .+....          .+...|.+++|+|....+|++++.||.|++||+.+++       
T Consensus       504 D~~I~iwd~~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-------  566 (793)
T PLN00181        504 NKKIKIFECESIIKDGRDIHYPVVEL----------ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-------  566 (793)
T ss_pred             CCEEEEEECCcccccccccccceEEe----------cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-------
Confidence            68999999864211      011111          1345799999998654899999999999999998776       


Q ss_pred             CCCceecccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           76 DTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                             ....+ .+|...|++++|+| ++.+|+++ .|++|++||++++                .....+..+ ..  
T Consensus       567 -------~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----------------~~~~~~~~~-~~--  619 (793)
T PLN00181        567 -------LVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----------------VSIGTIKTK-AN--  619 (793)
T ss_pred             -------EEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----------------cEEEEEecC-CC--
Confidence                   22233 68999999999997 67788875 7999999999877                555666644 23  


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC------
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------  226 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~------  226 (316)
                      +.++.|.++++.++++|+.||.|++||+++++ .+..+.+|...|.+++|. ++.+|++++.|++|++||++..      
T Consensus       620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~  698 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE  698 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence            88999866789999999999999999998765 467788999999999997 6788999999999999998742      


Q ss_pred             -CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc----------------------eeE-Eeeccccc
Q 021160          227 -DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------------------AYR-ERRYNAAD  282 (316)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~----------------------~~~-~~~~~~~~  282 (316)
                       .+..+.+|...+..+. +++++.++++++.|+.+++|+.......                      +.. .+.+++..
T Consensus       699 ~~l~~~~gh~~~i~~v~-~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        699 TPLHSFMGHTNVKNFVG-LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             cceEEEcCCCCCeeEEE-EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence             2556667776654444 7788899999999999999996533111                      111 45666666


Q ss_pred             ccccCCCCeEEEEec
Q 021160          283 FESDEEEGETYLLGF  297 (316)
Q Consensus       283 ~~~~~~~~~v~~~~~  297 (316)
                      +..+..+|.|.+|++
T Consensus       778 lva~~~dG~I~i~~~  792 (793)
T PLN00181        778 LVAANSTGNIKILEM  792 (793)
T ss_pred             EEEecCCCcEEEEec
Confidence            677777777777764

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.9e-28  Score=209.66  Aligned_cols=212  Identities=10%  Similarity=0.136  Sum_probs=166.0

Q ss_pred             CCCccceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEE
Q 021160           31 PMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  108 (316)
                      .||.+.|++++|+| ++ ++|++|+.|++|++||+.++.....  ...++.      ...+|...|.+++|+|++ .+|+
T Consensus        72 ~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~--~~~~l~------~L~gH~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQN--ISDPIV------HLQGHTKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             eCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccc--cCcceE------EecCCCCcEEEEEeCcCCCCEEE
Confidence            57999999999999 55 8999999999999999986532110  001122      227899999999999986 5777


Q ss_pred             E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          109 S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       109 s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      + +.|++|++||++++                .....+.+|...  |.+++| +|++.+|++++.|+.|++||+++++.+
T Consensus       143 Sgs~DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v  203 (493)
T PTZ00421        143 SAGADMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIV  203 (493)
T ss_pred             EEeCCCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEE
Confidence            7 47999999999887                567778888866  999999 899999999999999999999999999


Q ss_pred             EEeecCccc-eEEEEEcCCCCeEEEEe----CCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEec-CCCe
Q 021160          188 RLMVGDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT-PDVI  259 (316)
Q Consensus       188 ~~~~~~~~~-v~~~~~~p~~~~l~s~~----~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~  259 (316)
                      ..+.+|.+. +..+.|.|++..+++++    .|+.|++||++...  ......+.........+++++.++++++ .|+.
T Consensus       204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~  283 (493)
T PTZ00421        204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN  283 (493)
T ss_pred             EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence            999888764 45678999888877654    47899999998654  2222222333334445777888888776 5999


Q ss_pred             EEEEEecccCc
Q 021160          260 MHVLRLQRRQT  270 (316)
Q Consensus       260 ~~~w~~~~~~~  270 (316)
                      |++|++..+..
T Consensus       284 Iriwdl~~~~~  294 (493)
T PTZ00421        284 IRCFELMNERL  294 (493)
T ss_pred             EEEEEeeCCce
Confidence            99999987653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.2e-29  Score=193.94  Aligned_cols=244  Identities=14%  Similarity=0.168  Sum_probs=201.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      |.+..+-|..|+|++ +++++|+.||.|.+||..++++.+.+.      ......+ --+..+|.|+.|+.|.+++++| 
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLk------YQAqd~f-MMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLK------YQAQDNF-MMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhh------hhhhcce-eecccceEEEeecccHHHhhccC
Confidence            345668899999999 899999999999999999998643321      1111111 3467899999999999999996 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      .||.|++|.++++                .+++.|. .|..+  |+++.| +.|+..+++++.|.++++.-+++|+++..
T Consensus       283 qDGkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKE  343 (508)
T KOG0275|consen  283 QDGKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKE  343 (508)
T ss_pred             cCCcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHH
Confidence            6999999999999                7888887 78866  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +.+|.+.|+.+.|.++|..+++++.||+|++|+..+.+ +.++..  ..-++......+.+...++.+...+++.+.+++
T Consensus       344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            99999999999999999999999999999999998876 555543  334455555566677888888899999999876


Q ss_pred             ccC----------cc--eeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          267 RRQ----------TL--AYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       267 ~~~----------~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ..-          .-  +....+|.+.++..-.+++.+|.+...+|.-
T Consensus       424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence            431          11  2226788899999999999999999887753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=8.9e-30  Score=205.00  Aligned_cols=240  Identities=13%  Similarity=0.229  Sum_probs=195.3

Q ss_pred             cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC-CcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      .++||+..|+++.|.|....+|++++.|+.|+||++.. ++              |.++. .+|..+|..++|+++|..+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--------------~lrtf-~gH~k~Vrd~~~s~~g~~f  273 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--------------CLRTF-KGHRKPVRDASFNNCGTSF  273 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc--------------eehhh-hcchhhhhhhhccccCCee
Confidence            34689999999999994438999999999999999986 43              44444 8999999999999999866


Q ss_pred             EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCe
Q 021160          108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      .+ +-|+.|++||++++                +....+...   ..++++.| .|++ +.+++|+.|+.|+.||+++++
T Consensus       274 LS~sfD~~lKlwDtETG----------------~~~~~f~~~---~~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  274 LSASFDRFLKLWDTETG----------------QVLSRFHLD---KVPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             eeeecceeeeeeccccc----------------eEEEEEecC---CCceeeec-CCCCCcEEEEecCCCcEEEEeccchH
Confidence            66 57999999999999                676666543   23899999 7776 889999999999999999999


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      .++.+..|-+.|..+.|-++++.+++.+.|+.++||+.+... +.....+...-+......+.+.++++-+-|+.+-++.
T Consensus       334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            999999899999999999999999999999999999998775 2222222222233444677888999999999888887


Q ss_pred             eccc------------CcceeE---EeecccccccccCCCCeEEEEeccCCCCC
Q 021160          265 LQRR------------QTLAYR---ERRYNAADFESDEEEGETYLLGFSDSDAS  303 (316)
Q Consensus       265 ~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  303 (316)
                      +...            ....|.   .++|++..+.+++.+|++++||+..-..-
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV  467 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence            6432            122222   79999999999999999999998766543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=204.73  Aligned_cols=213  Identities=15%  Similarity=0.247  Sum_probs=173.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +++|+|++.++.+..+.|-.           |..-|.+++.||.. .++++++.|-.|++||.+..=             
T Consensus        76 D~~IrVfnynt~ekV~~FeA-----------H~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w-------------  130 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVKTFEA-----------HSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW-------------  130 (794)
T ss_pred             CceEEEEecccceeeEEeec-----------cccceeeeeecCCC-CeEEecCCccEEEEeeccCce-------------
Confidence            57899999998887777665           78899999999999 699999999999999998543             


Q ss_pred             cccccccCCCcccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       .......+|...|.+++|+|.. +.++++ -|++|++|.+...                .+..++.+|..+  |+|++|
T Consensus       131 -a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~----------------~~nfTl~gHekG--VN~Vdy  191 (794)
T KOG0276|consen  131 -ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP----------------HPNFTLEGHEKG--VNCVDY  191 (794)
T ss_pred             -eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------CCceeeeccccC--cceEEe
Confidence             2233348999999999999976 477774 6999999999888                688899999976  999999


Q ss_pred             ec-CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160          160 FG-PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  237 (316)
Q Consensus       160 ~~-~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  237 (316)
                      ++ ++..+|++|++|.++++||.++.+|++++.+|...|..+.|+|.-+++++||+||++|||+..+-+ ..++.-..+.
T Consensus       192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR  271 (794)
T KOG0276|consen  192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER  271 (794)
T ss_pred             ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce
Confidence            53 345699999999999999999999999999999999999999999999999999999999988876 4444444455


Q ss_pred             ceeeeecCCCCceeEEecCCCe
Q 021160          238 IMKANKQGREDHSRITLTPDVI  259 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~  259 (316)
                      +..+. ..+.++.++.|..+|.
T Consensus       272 vW~I~-~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  272 VWCIA-AHKGDGKIAVGFDEGS  292 (794)
T ss_pred             EEEEe-ecCCCCeEEEeccCCc
Confidence            55544 2233334444444443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.3e-28  Score=197.03  Aligned_cols=241  Identities=14%  Similarity=0.185  Sum_probs=189.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|.|||.......+.... ...+..+..||...-.+++|++...-.+++|+.|++|.+||+......        -..
T Consensus       146 ~~dv~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~  216 (422)
T KOG0264|consen  146 SGDVYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKV  216 (422)
T ss_pred             CCCEEEEEeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------Ccc
Confidence            47899999987654433322 333444556888888899999988789999999999999999865411        111


Q ss_pred             cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      ..+...+.+|...|..++|++... ++++ +.|+.+.|||+++..              .++.+...+|..+  +.|++|
T Consensus       217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--------------~~~~~~~~ah~~~--vn~~~f  280 (422)
T KOG0264|consen  217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--------------SKPSHSVKAHSAE--VNCVAF  280 (422)
T ss_pred             ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--------------CCCcccccccCCc--eeEEEe
Confidence            245556689999999999999876 5555 579999999999520              0566778888877  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC----------
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD----------  227 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~----------  227 (316)
                      .+.++..||+|+.|++|.+||++. .+++..+.+|...|.++.|+|+.. .||+++.|+.+.|||+..-.          
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d  360 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED  360 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence            666778889999999999999986 456889999999999999999765 48999999999999986421          


Q ss_pred             -----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          228 -----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       228 -----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                           +..-.+|...|....|.+.+...+++++.|+.++||++..
T Consensus       361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                 1233478888888886666888899999999999998653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.2e-29  Score=184.36  Aligned_cols=220  Identities=17%  Similarity=0.205  Sum_probs=179.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.... .++.   ..      +.|+.+|.++.|++.....+++++.|++|++|+...++         .+.+
T Consensus        82 DGSLrl~d~~~~s-~Pi~---~~------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---------Sv~T  142 (311)
T KOG0277|consen   82 DGSLRLFDLTMPS-KPIH---KF------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---------SVQT  142 (311)
T ss_pred             CceEEEeccCCCC-cchh---HH------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------ceEe
Confidence            6999999964332 2222   22      24899999999999876889999999999999998665         3333


Q ss_pred             cccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      |      .+|...|...+|+|.. +++++ +.|+++++||++..                .....+..|..+  +.++.|
T Consensus       143 f------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw  198 (311)
T KOG0277|consen  143 F------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDW  198 (311)
T ss_pred             e------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----------------CceeEEEeccce--eEeecc
Confidence            3      8899999999999975 57777 57999999999876                344458888866  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC--CCCCCCCc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNA  235 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~  235 (316)
                      ..-+...+++|+.|+.|+.||++. ..++..+.+|.-.|..+.|||... .||+++.|-++||||...+.  +.+..-|.
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht  278 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT  278 (311)
T ss_pred             cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence            666788999999999999999886 356788899999999999999764 59999999999999998665  55555677


Q ss_pred             ccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          236 EKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +-+..+.|...++.++++.+-|+.+.+|+
T Consensus       279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  279 EFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             eEEeccccccccCceeeecccccceeeec
Confidence            77777775555888999999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.9e-27  Score=219.47  Aligned_cols=261  Identities=11%  Similarity=0.126  Sum_probs=195.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.+++|+....+....+....      ..+|...|.+++|+|++ .++|+|+.|+.|+||++........ ....++. 
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~------~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~-  527 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGD------LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPVV-  527 (793)
T ss_pred             hhhhhhhcccceEEEEeecccc------ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccceE-
Confidence            3556677765544322222211      12488999999999999 8999999999999999864210000 0000111 


Q ss_pred             cccccccCCCcccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                          .  ..+...+.+++|++. +.+|+++ .|++|++||+.++                +.+..+.+|...  |++++|
T Consensus       528 ----~--~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~  583 (793)
T PLN00181        528 ----E--LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY  583 (793)
T ss_pred             ----E--ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE
Confidence                1  123457899999885 5677775 7999999999887                677788889866  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc-CCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAE  236 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~  236 (316)
                      +++++.+|++|+.|+.|++||+++++.+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++...  ...+.+|..
T Consensus       584 ~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        584 SSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence            3347899999999999999999999988888755 578999995 568899999999999999998764  456677888


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccC-----cc-----------eeEEeecccccccccCCCCeEEEEecc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ-----TL-----------AYRERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      .+..+.+ . ++..+++++.|+.+++||+....     .+           ....+.+....++++..++.|++|+..
T Consensus       663 ~V~~v~f-~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        663 TVSYVRF-V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CEEEEEE-e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            8776664 3 67789999999999999986421     01           112467778899999999999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=176.58  Aligned_cols=222  Identities=14%  Similarity=0.173  Sum_probs=187.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +.+|++|+.......+.+.           ||..+|..++.+.++ ..|++|+.|..+.+||+.+++             
T Consensus        38 drtvrLWNp~rg~liktYs-----------ghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk-------------   92 (307)
T KOG0316|consen   38 DRTVRLWNPLRGALIKTYS-----------GHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK-------------   92 (307)
T ss_pred             CceEEeecccccceeeeec-----------CCCceeeeccccccc-cccccCCCCceEEEEEcccCe-------------
Confidence            4579999988777666554           478899999999998 899999999999999999998             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ..+.+ .+|...|+.++|+.+...++++ -|.++++||.+..              ..++++.+....+.  |.++.. 
T Consensus        93 -v~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--------------s~ePiQildea~D~--V~Si~v-  153 (307)
T KOG0316|consen   93 -VDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--------------SFEPIQILDEAKDG--VSSIDV-  153 (307)
T ss_pred             -eeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccC--------------CCCccchhhhhcCc--eeEEEe-
Confidence             33333 8999999999999999999996 5999999999876              22678888877766  999977 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                        .+..|++|+.||+++.||++.|+...-..+  .+|++++|+++++..+.++.|+++++.|-.+++ +....+|...-+
T Consensus       154 --~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey  229 (307)
T KOG0316|consen  154 --AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY  229 (307)
T ss_pred             --cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccccee
Confidence              467899999999999999999998766655  479999999999999999999999999999998 777888887766


Q ss_pred             eeeec-CCCCceeEEecCCCeEEEEEecccCcc
Q 021160          240 KANKQ-GREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       240 ~~~~~-~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ...+. ......+++++.||.+.+||+......
T Consensus       230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             eeeeeecccceeEEeccCCceEEEEEeccceee
Confidence            65443 335678899999999999999876444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.2e-28  Score=207.86  Aligned_cols=230  Identities=15%  Similarity=0.218  Sum_probs=192.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      +..|..++|||.. ..++++-..|.|++||.+-+.              ++..+ ..|.++|..+.|+|.+.++++| .|
T Consensus         9 SsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~t--------------li~rF-deHdGpVRgv~FH~~qplFVSGGDD   72 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGT--------------LIDRF-DEHDGPVRGVDFHPTQPLFVSGGDD   72 (1202)
T ss_pred             cccccceecCCCC-CEEEEeecCceeeeehhhhhh--------------HHhhh-hccCCccceeeecCCCCeEEecCCc
Confidence            5578999999998 699999999999999999886              33333 8899999999999999999995 68


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      -.|++|+..+.                +++.++.||.+.  |..+.| ++.-.+|+++|+|.+|+||+.++.+++..+.+
T Consensus        73 ykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavltG  133 (1202)
T KOG0292|consen   73 YKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLTG  133 (1202)
T ss_pred             cEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence            89999999888                899999999976  999998 88899999999999999999999999999999


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC------------------------------CCCCCCcccceeee
Q 021160          193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF------------------------------PPLPDNAEKIMKAN  242 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~------------------------------~~~~~~~~~~~~~~  242 (316)
                      |..-|.|.+|+|....++++|-|.+|||||+.+-+.                              +.+.+|...+--.+
T Consensus       134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA  213 (1202)
T KOG0292|consen  134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA  213 (1202)
T ss_pred             CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence            999999999999999999999999999999864221                              11234555553333


Q ss_pred             ecCCCCceeEEecCCCeEEEEEecccCcc-----------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160          243 KQGREDHSRITLTPDVIMHVLRLQRRQTL-----------AYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       243 ~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                       +.+.-.++++++.|..|++|++..-+..           +.. -+-|....+.+.++|+.+-+||+..
T Consensus       214 -fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  214 -FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             -ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence             5566689999999999999998753222           112 4666667778888999999999865

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.8e-28  Score=205.97  Aligned_cols=249  Identities=16%  Similarity=0.170  Sum_probs=189.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC--------------------------------CC------
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS--------------------------------PI------   73 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~--------------------------------~~------   73 (316)
                      .|.+.|.++.|+++| +|||+|+.|+.|+||.+...+...                                ..      
T Consensus       265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            599999999999999 999999999999999986611000                                00      


Q ss_pred             -----CCCCCceec--ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee
Q 021160           74 -----SSDTPVDTF--CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS  146 (316)
Q Consensus        74 -----~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (316)
                           ..+..+..|  .+...+.+|.+.|..+.|+.++-+|.++.|++|++|++...                .++..|.
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~  407 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS  407 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe
Confidence                 000001111  12223478999999999998877777788999999999877                6777776


Q ss_pred             CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          147 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                       |.+.  |+|++|++-|.+|+++|+-|+.++||++...+.+.-...+ .-|++++|.|+|+..+.|+.+|.+++|+....
T Consensus       408 -Hndf--VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  408 -HNDF--VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             -cCCe--eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence             6655  9999998889999999999999999999988766555444 78999999999999999999999999998876


Q ss_pred             CCCC---CC------CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc------------CcceeEEeecccccccc
Q 021160          227 DFPP---LP------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR------------QTLAYRERRYNAADFES  285 (316)
Q Consensus       227 ~~~~---~~------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~------------~~~~~~~~~~~~~~~~~  285 (316)
                      ++..   +.      .....|..+...+.+...++..+.|..|||+|.+..            .......+..++..+.+
T Consensus       484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs  563 (712)
T KOG0283|consen  484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS  563 (712)
T ss_pred             eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence            5211   11      112257666655566667888899999999998443            12222357779999999


Q ss_pred             cCCCCeEEEEeccCCC
Q 021160          286 DEEEGETYLLGFSDSD  301 (316)
Q Consensus       286 ~~~~~~v~~~~~~~~~  301 (316)
                      +.++--||+|....-+
T Consensus       564 ~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  564 ASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eecCceEEEEeCCCCc
Confidence            9999999999975443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=4.1e-29  Score=193.91  Aligned_cols=213  Identities=12%  Similarity=0.257  Sum_probs=180.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +.+|+|||.++.++.+.+..           |...|..+.|+.   .++++++.|.++.+||+....-            
T Consensus       256 DsTvrvWDv~tge~l~tlih-----------HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~------------  309 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLNTLIH-----------HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD------------  309 (499)
T ss_pred             CceEEEEeccCCchhhHHhh-----------hcceeEEEEEeC---CEEEEecCCceeEEEeccCchH------------
Confidence            56899999999998776643           788999999985   5999999999999999986541            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      .....+..+|...|+.+.|+.  ++++++ +|.+|++|+..+.                ..++++.+|.-+  |.|+.+ 
T Consensus       310 it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~----------------efvRtl~gHkRG--IAClQY-  368 (499)
T KOG0281|consen  310 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC----------------EFVRTLNGHKRG--IACLQY-  368 (499)
T ss_pred             HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce----------------eeehhhhccccc--ceehhc-
Confidence            134455589999999999864  588884 7999999999998                799999999966  999887 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----------CCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPP  230 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----------~~~  230 (316)
                        .++++++|+.|.+|++||+..|.+++.+++|..-|.++.|  +.+.+++|+.||+|++||+.+..          +.+
T Consensus       369 --r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~  444 (499)
T KOG0281|consen  369 --RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT  444 (499)
T ss_pred             --cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHh
Confidence              5899999999999999999999999999999999999999  56789999999999999987653          334


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +..|...++.+.   .|...+++.+.|.+|-+||+..+
T Consensus       445 lv~hsgRVFrLQ---FD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  445 LVEHSGRVFRLQ---FDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             hhhccceeEEEe---ecceEEEeccCCCeEEEEEcCCC
Confidence            445666665544   35568999999999999998876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1e-27  Score=186.98  Aligned_cols=247  Identities=16%  Similarity=0.247  Sum_probs=192.6

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      +..|+..|.+++.+|+. +++++|+.|..-.+|++.++.              .+..+ .+|+..|+++.|+.+|.+||+
T Consensus        60 F~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge--------------~~~el-tgHKDSVt~~~FshdgtlLAT  123 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGE--------------FAGEL-TGHKDSVTCCSFSHDGTLLAT  123 (399)
T ss_pred             hhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCc--------------ceeEe-cCCCCceEEEEEccCceEEEe
Confidence            45699999999999976 899999999999999999886              33333 899999999999999999999


Q ss_pred             e-cCCcEEEEEcCCCC--------------------------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160          110 Y-NDELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  162 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  162 (316)
                      + .+|.|+||...++.                          +....++=.+.++.....+.+.||...  +++=.| .|
T Consensus       124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~p  200 (399)
T KOG0296|consen  124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IP  200 (399)
T ss_pred             cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cC
Confidence            7 69999999998875                          111122222335555677888999876  888898 89


Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEeec--------------------------------------------------
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--------------------------------------------------  192 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--------------------------------------------------  192 (316)
                      +|+.++++..||+|++|++.+++++..+..                                                  
T Consensus       201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~  280 (399)
T KOG0296|consen  201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP  280 (399)
T ss_pred             CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence            999999999999999999999987764431                                                  


Q ss_pred             -Cccc---eEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          193 -DRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       193 -~~~~---v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                       +...   |-++.|+..-++.|+|+.||+|.|||+...+++..-.|...++++.|..  ..++++++.+|.++.||.+++
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeecccc
Confidence             1111   2223344455678999999999999999999888888999999988655  679999999999999999988


Q ss_pred             CcceeE----------EeecccccccccCCCCeEEEEec
Q 021160          269 QTLAYR----------ERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       269 ~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      +.+...          ..+|+...+.+.+++++..++..
T Consensus       359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            554221          34556666666666666666554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=1.2e-26  Score=189.31  Aligned_cols=235  Identities=18%  Similarity=0.288  Sum_probs=191.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+|+.+|++++|+|++ .++++++.||.+++|++.+++              ..... ..|...+..+.|+|++++++++
T Consensus         6 ~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~--------------~~~~~-~~~~~~i~~~~~~~~~~~l~~~   69 (289)
T cd00200           6 KGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE--------------LLRTL-KGHTGPVRDVAASADGTYLASG   69 (289)
T ss_pred             cccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCC--------------cEEEE-ecCCcceeEEEECCCCCEEEEE
Confidence            4689999999999998 899999999999999998764              11222 5677888999999999877774


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .++.|++|++..+                +....+..|...  +.++.| .+++.++++++.++.+++||+.+++....
T Consensus        70 ~~~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  130 (289)
T cd00200          70 SSDKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTT  130 (289)
T ss_pred             cCCCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEE
Confidence             6999999999876                566777777755  999999 88888999988899999999999999988


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +..|...+.+++|+|++.++++++.|+.|++||++..+ ...+..+...+..+. +.+++..+++++.++.+++|++...
T Consensus       131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA-FSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEE-ECCCcCEEEEecCCCcEEEEECCCC
Confidence            98899999999999998888888889999999998766 555666666665555 7778888888888999999998753


Q ss_pred             Ccc---------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          269 QTL---------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       269 ~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +..         .. ..+.++...+.+...++.+++|+...+.
T Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence            221         11 1455666666666678889999987543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=9.6e-27  Score=196.95  Aligned_cols=252  Identities=13%  Similarity=0.153  Sum_probs=208.0

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      |...++.+-.-.....+.+.           ..+|..++|+..| ..||.|+. =|++-||+..+...            
T Consensus       287 G~f~LyelP~f~lih~LSis-----------~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsY------------  342 (893)
T KOG0291|consen  287 GEFGLYELPDFNLIHSLSIS-----------DQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESY------------  342 (893)
T ss_pred             CeeEEEecCCceEEEEeecc-----------cceeeEEEecccC-CEEEEcCCccceEEEEEeeccce------------
Confidence            44556666555555555543           4579999999999 89998875 48999999986642            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        .... .+|...+++++++|||.++++| .||+|++||...+                -+..+|..|+..  |+.+.| 
T Consensus       343 --VlKQ-QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f-  400 (893)
T KOG0291|consen  343 --VLKQ-QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF-  400 (893)
T ss_pred             --eeec-cccccceeeEEECCCCcEEEeccCCCcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-
Confidence              1112 6899999999999999999995 7999999999988                588999999987  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCC-cEEEecCCCCC-CCCCCCCccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTD-FPPLPDNAEK  237 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~-~i~iwd~~~~~-~~~~~~~~~~  237 (316)
                      +..++.+++.+.||+|+.||+...+..+++.... -...+++..|.|..++.|+.|. .|.+|++++++ +-.+.+|..+
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP  480 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP  480 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc
Confidence            8999999999999999999999999988887543 4567899999999988888776 69999999999 7778899999


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccC--cc--------eeEEeecccccccccCCCCeEEEEeccCCC
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQ--TL--------AYRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +..+. +++++..++++|-|.+||+|++-...  ..        .-..++|++..++...-+|.+-+||...+.
T Consensus       481 Vs~l~-f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  481 VSGLS-FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             ceeeE-EccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence            97766 88889999999999999999986541  11        112689999999999889999999877653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=3.5e-26  Score=186.28  Aligned_cols=201  Identities=16%  Similarity=0.288  Sum_probs=170.3

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  109 (316)
                      .||...|++++|-|.-|..+++|+.|+.|.+|+-.--+               .+.....|...|.|+.|+|||+++++ 
T Consensus       144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK---------------Fk~s~r~HskFV~~VRysPDG~~Fat~  208 (603)
T KOG0318|consen  144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK---------------FKSSFREHSKFVNCVRYSPDGSRFATA  208 (603)
T ss_pred             eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee---------------eeecccccccceeeEEECCCCCeEEEe
Confidence            58999999999999999999999999999999865333               22233778899999999999998888 


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      +.||++.+||=.++                ..+..+.   +|...  |..++| +||+..+++++.|.++++||+.+.++
T Consensus       209 gsDgki~iyDGktg----------------e~vg~l~~~~aHkGs--IfalsW-sPDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  209 GSDGKIYIYDGKTG----------------EKVGELEDSDAHKGS--IFALSW-SPDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             cCCccEEEEcCCCc----------------cEEEEecCCCCcccc--EEEEEE-CCCCceEEEecCCceEEEEEeeccce
Confidence            68999999999888                6777776   77766  999999 99999999999999999999887654


Q ss_pred             EE-------------------------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          187 VR-------------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       187 ~~-------------------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      +.                                           .+.+|...|+++..+|++++|.+|+.||.|.-|+.
T Consensus       270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence            43                                           55678899999999999999999999999999999


Q ss_pred             CCCCCCCC--CCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          224 MPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ..+....+  ..|...+..++..  +...+++.+-|.++++.++..
T Consensus       350 ~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~  393 (603)
T KOG0318|consen  350 GSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKD  393 (603)
T ss_pred             CCccccccccccccceEEEEeec--CCCcEEEEecCCeEEEEeccc
Confidence            99885555  5677777666533  335788999999999998754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.2e-27  Score=202.33  Aligned_cols=248  Identities=17%  Similarity=0.240  Sum_probs=199.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +..+++||..+......-          ..||.+.|.++++..-+ .++++|+.|.++++||+.+++             
T Consensus       227 ~~tl~~~~~~~~~~i~~~----------l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~-------------  282 (537)
T KOG0274|consen  227 DSTLHLWDLNNGYLILTR----------LVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGE-------------  282 (537)
T ss_pred             CceeEEeecccceEEEee----------ccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCc-------------
Confidence            456788888765543221          13699999999998744 899999999999999999998             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       |...+ .+|...+.++...+  ..++++ .|.+|++|+++++                ..+..+.+|...  |.++.. 
T Consensus       283 -C~~~l-~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~-  339 (537)
T KOG0274|consen  283 -CTHSL-QGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL-  339 (537)
T ss_pred             -EEEEe-cCCCceEEEEEccC--ceEeeccCCceEEEEeccCc----------------ceEEEecccccc--EEEEEe-
Confidence             66666 78999999987643  356664 7999999999988                788888889877  999987 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC-C-CCCCCCCcccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-D-FPPLPDNAEKI  238 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~~~~~  238 (316)
                      .  +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. +.+++|+.|++|++||+++. + +.++.+|..-+
T Consensus       340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV  416 (537)
T ss_pred             c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence            3  889999999999999999999999999999999999988765 78999999999999999998 4 88888887766


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEe---------ecccccccccCCCCeEEEEeccCCCC
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER---------RYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ....   ..++.+++++.|++|++||..+++.......         ......+.....++.+.+||+..+..
T Consensus       417 ~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  417 SSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             cccc---cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence            3333   3456999999999999999887654433311         11124455567788899998887754

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.5e-26  Score=199.18  Aligned_cols=252  Identities=11%  Similarity=0.048  Sum_probs=178.4

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCeEEEe-cC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-ND  112 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d  112 (316)
                      ..|.....++++ ..+++++.+.....|+...+...........+.  ....+..+|.+.|.+++|+| ++++|+++ .|
T Consensus        21 ~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         21 LNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             eccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            345556666665 456777777777788765443211111001000  11122378999999999999 77788875 79


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      ++|++||+.......         ....++..+.+|...  |.+++| +|++ .+|++++.|+.|++||+.+++.+..+.
T Consensus        98 gtIkIWdi~~~~~~~---------~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQ---------NISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             CEEEEEecCCCcccc---------ccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence            999999997641000         001245678888866  999999 7764 799999999999999999999999999


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEec----CCCeEEEEEec
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQ  266 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~d~~~~~w~~~  266 (316)
                      +|...|.+++|+|++.+|++++.|++|++||+++++ +..+..|.........|.+++..+++++    .|+.+++||++
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            999999999999999999999999999999999877 5566667655444444666656666543    47999999997


Q ss_pred             ccCcceeE------------EeecccccccccC-CCCeEEEEeccCCC
Q 021160          267 RRQTLAYR------------ERRYNAADFESDE-EEGETYLLGFSDSD  301 (316)
Q Consensus       267 ~~~~~~~~------------~~~~~~~~~~~~~-~~~~v~~~~~~~~~  301 (316)
                      +...+...            .+.++...+..+. .++.|.+|++.++.
T Consensus       246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            64332211            2344555555443 58889999997764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.8e-27  Score=182.22  Aligned_cols=223  Identities=16%  Similarity=0.246  Sum_probs=175.0

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC----CCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS----PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      ..|+.++.+.+|+|+| .++|+|+.|..|+|.|++..-...    .+.....-.--.++++ -.|.+.|+++.|+|...+
T Consensus       109 t~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             eecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhhe
Confidence            3589999999999999 899999999999999997321100    0000000010112233 678999999999999999


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      |+++ .|++|++||....                ...+.++.......+.++.| +|.|.+|+.|.+...+++||+++-+
T Consensus       187 LiS~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             EEeccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEecccee
Confidence            9996 6999999999765                23333443333345999999 8999999999999999999999988


Q ss_pred             eEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC-CCcccceeeeecCCCCceeEEecCCCeE
Q 021160          186 LVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANKQGREDHSRITLTPDVIM  260 (316)
Q Consensus       186 ~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~  260 (316)
                      +....   ..|++.|+++.+++.+++.++++.||.|++||--+.+ +.++. .|...-+..+.+..++.++++.+.|..+
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence            86554   3588999999999999999999999999999976655 55553 4666666777799999999999999999


Q ss_pred             EEEEecccCcce
Q 021160          261 HVLRLQRRQTLA  272 (316)
Q Consensus       261 ~~w~~~~~~~~~  272 (316)
                      ++|.+.++..+.
T Consensus       330 kLWEi~t~R~l~  341 (430)
T KOG0640|consen  330 KLWEISTGRMLK  341 (430)
T ss_pred             eeeeecCCceEE
Confidence            999998875543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=2e-26  Score=187.63  Aligned_cols=180  Identities=16%  Similarity=0.262  Sum_probs=136.4

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+|..+++-..|+|.| .|+|+|...|+|||||....+.             .++..+..-.++|..++|+.+++.+++.
T Consensus        56 tEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI~av  121 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRIAAV  121 (603)
T ss_pred             ccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEEEEE
Confidence            4688899999999999 8999999999999999875331             1222223446789999999999866663


Q ss_pred             cC-----CcEEEEEcCCCCCCCC-------------------------ccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160          111 ND-----ELVYLFEKNMGLGPSP-------------------------LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus       111 ~d-----~~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      .+     |.+.+||.-+..+...                         ..+....-+..+....+..|..  .|.++.| 
T Consensus       122 GEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~VRy-  198 (603)
T KOG0318|consen  122 GEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCVRY-  198 (603)
T ss_pred             ecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeEEE-
Confidence            32     3466777654331111                         1111111222233344455664  4999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +|||.++++.+.||.+.+||-.+|+.+..+.   +|++.|.+++|+||+..|+|++.|.+++|||+.+.+
T Consensus       199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS  268 (603)
T ss_pred             CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence            9999999999999999999999999999997   899999999999999999999999999999987654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2e-27  Score=200.87  Aligned_cols=211  Identities=16%  Similarity=0.224  Sum_probs=179.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec-ccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .|.+.|.+++..|++ ..+++|+.|.+|++||..--.-  .......+-.+ ..++  -.-...|.|+++||||++|+.+
T Consensus       452 AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~~~rt--Lel~ddvL~v~~Spdgk~LaVs  526 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLKHTRT--LELEDDVLCVSVSPDGKLLAVS  526 (888)
T ss_pred             ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEec--cCcccceeeeeccceE--EeccccEEEEEEcCCCcEEEEE
Confidence            589999999999999 8999999999999999863220  00000010000 0011  1235689999999999999987


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       -|.+|++|-+++.                +..-.+.||.-+  |.|+.. +|++.+++||+.|.+|++|-++-|.|-..
T Consensus       527 LLdnTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS  587 (888)
T KOG0306|consen  527 LLDNTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKS  587 (888)
T ss_pred             eccCeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhh
Confidence             6999999999887                677788999977  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +.+|...|.++.|-|....+.++|.|+.|+-||-..-. ++.+.+|...+..++ ..++|.++++++.|..+++|....
T Consensus       588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE-EcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999998889999999999999988876 889999999998887 788999999999999999998544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=5.3e-27  Score=183.84  Aligned_cols=232  Identities=12%  Similarity=0.251  Sum_probs=178.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC-------
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-------   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~-------   74 (316)
                      +-++++|-.+..+.+-...       .+-.||+..|-+++..+++ ..+++|+.|.+|.+|+..+... .+.+       
T Consensus       168 Dqtl~Lw~~~~~~~~~~~~-------~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rr  238 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENKVKAL-------KVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEE-DELESSSNRRR  238 (423)
T ss_pred             CceEEEEEecCchhhhhHH-------hHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCcc-ccccccchhhh
Confidence            4567777776554321110       0112799999999999999 8999999999999999432211 0000       


Q ss_pred             ----CCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC
Q 021160           75 ----SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN  150 (316)
Q Consensus        75 ----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (316)
                          .........+.....+|..+|.++.|++.+..+.++.|.+|+.||+.++                .....+.+.. 
T Consensus       239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k-  301 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK-  301 (423)
T ss_pred             hhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc----------------cceeeeecCc-
Confidence                0011122233444589999999999999555555578999999999998                5555555443 


Q ss_pred             CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe---eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160          151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~  226 (316)
                        .+.++++ +|...+|++|+.|..+++||.+++.   ..+++.+|...|.++.|+|...+ |++++.|+++++||+++.
T Consensus       302 --sl~~i~~-~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  302 --SLNCISY-SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             --ceeEeec-ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence              3899998 8999999999999999999998753   45678899999999999998876 999999999999999987


Q ss_pred             C--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          227 D--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       227 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +  +..+.+|.+.++...|+.  +..+++|+.|..++++.
T Consensus       379 k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  379 KAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CCcceeeccCCceEEEEeccC--CceEEeccCcceEEEec
Confidence            6  888899999998888644  46899999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=5.1e-26  Score=173.30  Aligned_cols=221  Identities=14%  Similarity=0.187  Sum_probs=177.4

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++-.|.+|++... ++..-.         .+||+++|..+.|.+++ +.+++++.|.+|+.||.++++            
T Consensus        67 ~Dr~I~LWnv~gd-ceN~~~---------lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~------------  123 (338)
T KOG0265|consen   67 SDRAIVLWNVYGD-CENFWV---------LKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK------------  123 (338)
T ss_pred             CcceEEEEecccc-ccceee---------eccccceeEeeeeccCC-CEEEEecCCceEEEEecccce------------
Confidence            3557888886543 211111         23699999999999999 899999999999999999998            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                        +.+.. .+|..-++.+.-+.-|..++ ++ .|+++++||+++.                ..++++.....   ++++.
T Consensus       124 --~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----------------~~~~t~~~kyq---ltAv~  181 (338)
T KOG0265|consen  124 --RIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----------------EAIKTFENKYQ---LTAVG  181 (338)
T ss_pred             --eeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeeccc----------------chhhcccccee---EEEEE
Confidence              44444 78889899988555565444 44 5999999999987                56666654332   89999


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----CCCCCC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPD  233 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~  233 (316)
                      | ...+..+.+|+-|+.|++||++.......+.+|...|+.+..+|+|.++.+-+.|.++++||++...     +..+.+
T Consensus       182 f-~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g  260 (338)
T KOG0265|consen  182 F-KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG  260 (338)
T ss_pred             e-cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence            9 8889999999999999999999999999999999999999999999999999999999999987542     222333


Q ss_pred             Cc----ccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          234 NA----EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       234 ~~----~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      |.    ...+.+. |+++++.+-+++.|..+.+||....
T Consensus       261 ~~hnfeknlL~cs-wsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  261 HIHNFEKNLLKCS-WSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             chhhhhhhcceee-ccCCCCccccccccceEEEeecccc
Confidence            32    2234455 8899999999999999999997764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=3.3e-28  Score=187.46  Aligned_cols=226  Identities=14%  Similarity=0.193  Sum_probs=184.0

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++|.+.|||..+++..+-+...   ....+-.|..+|.|++|+.+. ..+|+|+.||.|++|.++++.            
T Consensus       233 vDGFiEVWny~~GKlrKDLkYQ---Aqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~------------  296 (508)
T KOG0275|consen  233 VDGFIEVWNYTTGKLRKDLKYQ---AQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ------------  296 (508)
T ss_pred             ccceeeeehhccchhhhhhhhh---hhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch------------
Confidence            4799999999988765444322   122334578899999999998 899999999999999999999            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        |.+.+..+|...|+|+.|+.|+..+.+ +.|.++++.-+..+                +.++.|.+|...  |+...|
T Consensus       297 --ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f  356 (508)
T KOG0275|consen  297 --CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF  356 (508)
T ss_pred             --HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----------------hhHHHhcCcccc--ccceEE
Confidence              777776799999999999999986666 57999999999988                899999999966  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC----------------------------------------------
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD----------------------------------------------  193 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~----------------------------------------------  193 (316)
                       .++|..+++++.||+|++|+.++.+++.+++..                                              
T Consensus       357 -t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR  435 (508)
T KOG0275|consen  357 -TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR  435 (508)
T ss_pred             -cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence             999999999999999999998877655433210                                              


Q ss_pred             -ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          194 -RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       194 -~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                       .+...+.+.+|.|.++.+.++|+.++-+...+++ ..+++.|...++.+. ..|..+++++.+.||.+++|.
T Consensus       436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~-HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT-HHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc-cCcccchhhhhcccchhhhcC
Confidence             1233456678888888888888888888888777 566777777777776 667777888888888888883

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=7.1e-26  Score=191.63  Aligned_cols=260  Identities=13%  Similarity=0.159  Sum_probs=206.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      +.+++|+..+.++.+.+.+.             -+.+..|.|.+ +++++|...|.+.+||+.+..+             
T Consensus       394 ~SikiWn~~t~kciRTi~~~-------------y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l-------------  446 (888)
T KOG0306|consen  394 ESIKIWNRDTLKCIRTITCG-------------YILASKFVPGD-RYIVLGTKNGELQVFDLASASL-------------  446 (888)
T ss_pred             CcEEEEEccCcceeEEeccc-------------cEEEEEecCCC-ceEEEeccCCceEEEEeehhhh-------------
Confidence            67999999988887666543             57899999987 9999999999999999998762             


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                       ...+ .+|.+.|++++.+|+++.+++ +.|.+|++||..-... .+....  .+-..+..+++. -.+  .|.|+++ |
T Consensus       447 -~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~--k~lsl~~~rtLe-l~d--dvL~v~~-S  517 (888)
T KOG0306|consen  447 -VETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK--KVLSLKHTRTLE-LED--DVLCVSV-S  517 (888)
T ss_pred             -hhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc--eeeeeccceEEe-ccc--cEEEEEE-c
Confidence             2233 689999999999999997777 5799999999864421 000000  000001112222 222  3999999 9


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccccee
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK  240 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~  240 (316)
                      ||+++|+.+--|.+|++|-+.+-+....+.||.-+|.+|..+|+++.++|||.|+.|+||-+.=+. ...+.+|.+.++.
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence            999999999999999999999999999999999999999999999999999999999999998776 6778899999988


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecc---------cCcceeE-EeecccccccccCCCCeEEEEeccC
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQR---------RQTLAYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      .. +-|+...+++++.|+.++.||-..         +...++. ...|.+..+.+.+.|-.+-+|.-.+
T Consensus       598 V~-F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  598 VQ-FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EE-EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            87 677889999999999999997443         3344444 6678888888877777788777665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-25  Score=187.73  Aligned_cols=253  Identities=17%  Similarity=0.243  Sum_probs=202.2

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .|++|+-.+.+...+....           ...|+++.|+++| .+|++|..+|.|.|||..+.+              .
T Consensus       198 ~vylW~~~s~~v~~l~~~~-----------~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~  251 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFG-----------EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------K  251 (484)
T ss_pred             eEEEEecCCCceEEeEecC-----------CCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------c
Confidence            6899999888765565553           5589999999999 899999999999999998776              4


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  162 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  162 (316)
                      ...+...|...|.+++|+  +..+.++ .|+.|..+|++...               .....+.+|...  |..++| ++
T Consensus       252 ~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~  311 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SP  311 (484)
T ss_pred             cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CC
Confidence            445534499999999998  4566665 79999999998872               222347888866  999999 99


Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEe--CCCcEEEecCCCCCCCCCCCCcccce
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIM  239 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~  239 (316)
                      ++.++|+|+.|+.+.|||....+++..+..|...|..++|+|-. ..||+|+  .|+.|++||..++...........|.
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVc  391 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVC  391 (484)
T ss_pred             CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCcee
Confidence            99999999999999999998888899999999999999999954 4578765  89999999999988444444556677


Q ss_pred             eeeecCCCCceeEE-ecCCCeEEEEEecccC----------cceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          240 KANKQGREDHSRIT-LTPDVIMHVLRLQRRQ----------TLAYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       240 ~~~~~~~~~~~~~s-~~~d~~~~~w~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .+.|.....+++.+ |..+..|.+|+..+..          ...+...+|++..+.++..|+.+-+|.+.+.+.
T Consensus       392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERP  465 (484)
T ss_pred             eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence            77744445555555 4467899999985422          122337899999999999999999999877543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.4e-26  Score=185.47  Aligned_cols=253  Identities=19%  Similarity=0.244  Sum_probs=195.8

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-  109 (316)
                      -|.+.|+.+..-|+++.++|+++..+.+.|||..+..-..     .....+.+...+.+|...-.+++|++... .|++ 
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~-----~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP-----KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc-----cccccCCCceEEEeecccccccccccccceeEeec
Confidence            4899999999999999999999999999999997654211     11112233334478888788899999765 5555 


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc--CCeeE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLV  187 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~--~~~~~  187 (316)
                      +.|++|++||+......         -+...+...+.+|...  |..++|+..+..+++++++|+.+.|||++  +.++.
T Consensus       197 ~~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cCCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence            68999999999876311         0112456678899976  99999976678889999999999999999  56667


Q ss_pred             EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          188 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      ....+|.+.|++++|+|.+. .|||||.|++|++||++..+  +.++.+|...++++.|.+.....+++.+.|+.+++||
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            77889999999999999665 49999999999999999865  8899999999999985555788999999999999999


Q ss_pred             ecccCcce-------------eE-----------Eeec-ccccccccCCCCeEEEEeccCC
Q 021160          265 LQRRQTLA-------------YR-----------ERRY-NAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       265 ~~~~~~~~-------------~~-----------~~~~-~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      +.+-....             +.           .+.| ..-.+.+..+++.+.+|..++.
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            97521111             11           2233 2344566788889999998854

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.2e-26  Score=182.83  Aligned_cols=198  Identities=16%  Similarity=0.249  Sum_probs=162.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-c
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~  111 (316)
                      +..|.+++|-.+| .++|+|...|.|++||+.+..              ..+.+ .+|..++..+.|+|++. .++++ .
T Consensus        68 k~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~--------------iLR~~-~ah~apv~~~~f~~~d~t~l~s~sD  131 (487)
T KOG0310|consen   68 KDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV--------------ILRQL-YAHQAPVHVTKFSPQDNTMLVSGSD  131 (487)
T ss_pred             ccceeEEEeecCC-eEEEccCCcCcEEEeccccHH--------------HHHHH-hhccCceeEEEecccCCeEEEecCC
Confidence            6689999999999 999999999999999966532              23333 88999999999999876 66666 5


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEe
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLM  190 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~  190 (316)
                      |+.+++||+.+.                .....+.+|++.  |.+.+|.+.++..+++|+.||.|++||.++. ..+.++
T Consensus       132 d~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  132 DKVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             CceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence            778899999887                444478899976  9999995555668999999999999999976 555555


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                       .|..+|.++.+-|.|..||+++ -..|++||+.++.  +..+..|.+.+.++. ...++..|++++-|+.++++++.+-
T Consensus       194 -nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~-l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  194 -NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLR-LASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             -cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEE-eecCCceEeecccccceEEEEccce
Confidence             4889999999999999999998 4689999998554  445555888886666 6668899999999999999995543

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.2e-25  Score=191.98  Aligned_cols=221  Identities=14%  Similarity=0.135  Sum_probs=162.4

Q ss_pred             EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCcc
Q 021160           53 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS  130 (316)
Q Consensus        53 g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~  130 (316)
                      |+.++.+++|+.....              ....+ .+|...|.+++|+|+ +.+|+++ .|++|++||+........  
T Consensus        50 GG~~gvI~L~~~~r~~--------------~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP--------------PVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--  112 (568)
T ss_pred             CCceeEEEeeecCCCc--------------eEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--
Confidence            5567888888876442              22222 789999999999997 6788885 799999999976410000  


Q ss_pred             CCccccccCCCcceeeCCcCCceeeeEEEecCCCcE-EEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021160          131 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF  209 (316)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  209 (316)
                            ....+...+.+|...  |.+++| +|++.. +++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus       113 ------~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        113 ------EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             ------ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence                  000233467788866  999999 888775 5789999999999999998777775 56789999999999999


Q ss_pred             EEEeCCCcEEEecCCCCC-CCCCCCCcccceeeee----cCCCCceeEEecCCC----eEEEEEecccCcceeE-E----
Q 021160          210 ATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANK----QGREDHSRITLTPDV----IMHVLRLQRRQTLAYR-E----  275 (316)
Q Consensus       210 ~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~d~----~~~~w~~~~~~~~~~~-~----  275 (316)
                      ++++.|+.|+|||++++. +.++.+|...+.....    +++++.++++++.++    .+++||++....+... .    
T Consensus       183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~  262 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA  262 (568)
T ss_pred             EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence            999999999999999887 5667777765433332    346778888877664    7999999864333222 1    


Q ss_pred             --------eecccccccccCCCCeEEEEeccCC
Q 021160          276 --------RRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       276 --------~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                              ..+++..+.++..++.+++|++..+
T Consensus       263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence                    1223455666778888999998654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.4e-27  Score=198.08  Aligned_cols=228  Identities=14%  Similarity=0.224  Sum_probs=178.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|-+||+......+.+..        +..|+..++++.|++..+++|++|+.||.|++||++..+-            
T Consensus       109 nG~i~vWdlnk~~rnk~l~~--------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S------------  168 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNKLLTV--------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS------------  168 (839)
T ss_pred             CCcEEEEecCccccchhhhH--------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc------------
Confidence            48899999986332222221        1238899999999999999999999999999999997752            


Q ss_pred             cccccccCCCcccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ..+. .+....|..|+|+|.. ..++++ ..|.+++||++...               +....+..|.+.  |.++.|
T Consensus       169 --~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw  228 (839)
T KOG0269|consen  169 --KSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW  228 (839)
T ss_pred             --cccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------hHHHHhhcccCc--eEEEee
Confidence              1111 4567889999999964 466665 78999999999873               466778889977  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCe-EEEEe--CCCcEEEecCCCCC--CCCCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTD--FPPLPD  233 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~-l~s~~--~d~~i~iwd~~~~~--~~~~~~  233 (316)
                       +|++.+||+|+.|+.|+|||+.+++.-....-+ ..+|..+.|-|..++ ||+++  .|-.|+|||++...  ..++..
T Consensus       229 -hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  229 -HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             -cCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence             899999999999999999999866543333323 368999999998877 77776  67899999999876  566777


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      |...+..++|.+.+...+.+++.|+++..-.++....
T Consensus       308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             cCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            8887777776666888999999999887666655433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.7e-26  Score=188.12  Aligned_cols=221  Identities=15%  Similarity=0.211  Sum_probs=188.3

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|.|.|||..+.+..+.+..+          |...|.+++|+.   ..+.+|+.|+.|..+|++..+.           
T Consensus       237 ~~g~v~iwD~~~~k~~~~~~~~----------h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~-----------  292 (484)
T KOG0305|consen  237 SDGTVQIWDVKEQKKTRTLRGS----------HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH-----------  292 (484)
T ss_pred             cCCeEEEEehhhccccccccCC----------cCceeEEEeccC---ceEEEecCCCcEEEEEEecchh-----------
Confidence            4689999999887766655543          788999999993   6899999999999999998762           


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         ......+|...|..++|+++++++|++ .|+.+.|||....                .+...+..|...  |..++|
T Consensus       293 ---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----------------~p~~~~~~H~aA--VKA~aw  351 (484)
T KOG0305|consen  293 ---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----------------EPKFTFTEHTAA--VKALAW  351 (484)
T ss_pred             ---hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----------------cccEEEecccee--eeEeee
Confidence               222348899999999999999999995 7999999999766                688899999977  999999


Q ss_pred             ecCCCcEEEEec--cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEecCCCCC-CCCCCCC
Q 021160          160 FGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       160 ~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                      .+-...+||+|+  .|+.|++||..+++.+..+.. .+.|.+|.|++..+-|+++.  .+..|.||+..+.+ +..+.+|
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH  430 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH  430 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence            555677888875  599999999999999888764 46899999999987766553  56689999998877 7888999


Q ss_pred             cccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ...++.++ +++++..+++++.|.++++|++-..
T Consensus       431 ~~RVl~la-~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  431 TSRVLYLA-LSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cceeEEEE-ECCCCCEEEEecccCcEEeccccCC
Confidence            99998888 8999999999999999999998764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-25  Score=176.86  Aligned_cols=250  Identities=13%  Similarity=0.176  Sum_probs=196.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      .|..+|.-+.|+++| ++||+++.|.+..+|.+.....            +.......+|..+|..+.|+||.++|+++ 
T Consensus       222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            489999999999999 9999999999999999864431            23334448999999999999999987774 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|..+.+||+.++                .....+... .+..+.+++| .|||..+++|+.|+.+..||+. |..+...
T Consensus       289 ~~e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W  349 (519)
T KOG0293|consen  289 FDEVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNW  349 (519)
T ss_pred             chHheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence            6888999999998                455555432 2234899999 8999999999999999999997 5555555


Q ss_pred             ecC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          191 VGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       191 ~~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ++- ...|.+++.++||+++++...|..|++++.++.....+-....++++.. .+.++.+++.--.+..+++||+++..
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~-iS~d~k~~LvnL~~qei~LWDl~e~~  428 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS-ISKDGKLALVNLQDQEIHLWDLEENK  428 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE-EcCCCcEEEEEcccCeeEEeecchhh
Confidence            442 3579999999999999999999999999998876443433445565554 78899999999999999999998532


Q ss_pred             c--------ce-e---EEeec-ccccccccCCCCeEEEEeccCCCCCCCCCCcceeee
Q 021160          270 T--------LA-Y---RERRY-NAADFESDEEEGETYLLGFSDSDASSEGGGNQRECI  314 (316)
Q Consensus       270 ~--------~~-~---~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  314 (316)
                      .        .. |   .+|.. +...++++++|+.||+|+-..++--++..|-.+.||
T Consensus       429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN  486 (519)
T KOG0293|consen  429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN  486 (519)
T ss_pred             HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence            1        11 1   25544 448899999999999999999887666666666665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.8e-25  Score=174.84  Aligned_cols=235  Identities=12%  Similarity=0.161  Sum_probs=187.7

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      ||..+|..+.|+|+. +++++++.|..+.+||+.++.              +......++...+.+.+|.|||..+++| 
T Consensus       267 gh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd--------------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs  331 (519)
T KOG0293|consen  267 GHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGD--------------LRHLYPSGLGFSVSSCAWCPDGFRFVTGS  331 (519)
T ss_pred             cccCceEEEEECCCC-CeEEecCchHheeeccCCcch--------------hhhhcccCcCCCcceeEEccCCceeEecC
Confidence            699999999999999 899999999999999999998              3333335567889999999999877775 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|+++..||++..                 ......+... ..|.+++. ++||.++++.+.|..+++++.++......+
T Consensus       332 ~dr~i~~wdlDgn-----------------~~~~W~gvr~-~~v~dlai-t~Dgk~vl~v~~d~~i~l~~~e~~~dr~li  392 (519)
T KOG0293|consen  332 PDRTIIMWDLDGN-----------------ILGNWEGVRD-PKVHDLAI-TYDGKYVLLVTVDKKIRLYNREARVDRGLI  392 (519)
T ss_pred             CCCcEEEecCCcc-----------------hhhccccccc-ceeEEEEE-cCCCcEEEEEecccceeeechhhhhhhccc
Confidence            6999999999875                 4455555543 34999998 999999999999999999998876555444


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc--eeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      .. ..+|++++.|.+++++++.=.+..+++||++... +....+|...-  +..+.-..+..++++|+.|+.|++|+..+
T Consensus       393 se-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s  471 (519)
T KOG0293|consen  393 SE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS  471 (519)
T ss_pred             cc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence            43 4689999999999998888889999999999766 56666766543  33332233668999999999999999887


Q ss_pred             cCcceeE----------Eeec-ccccccccCCCCeEEEEeccCCC
Q 021160          268 RQTLAYR----------ERRY-NAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       268 ~~~~~~~----------~~~~-~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ++.+...          .+.| +...+++.++||+|-+|+.++.+
T Consensus       472 gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~  516 (519)
T KOG0293|consen  472 GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNN  516 (519)
T ss_pred             CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCccc
Confidence            7544321          3444 56788999999999999988764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=8.3e-26  Score=176.35  Aligned_cols=235  Identities=11%  Similarity=0.127  Sum_probs=176.8

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      |+|.|+||+..++.....+...           -..+.=+.|||.+ ..|++|+.||.+-+|.+.++.            
T Consensus       126 msG~v~v~~~stg~~~~~~~~e-----------~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~------------  181 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGEQWKLDQE-----------VEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQA------------  181 (399)
T ss_pred             CCccEEEEEcccCceEEEeecc-----------cCceEEEEecccc-cEEEeecCCCcEEEEECCCcc------------
Confidence            7899999999988765444311           3367889999988 899999999999999999753            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCcc------CCccc------------------
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLS------LSPED------------------  135 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~------~~~~~------------------  135 (316)
                         ...+..+|..++++=.|.|+|+.++++ .||+|++||+.++.......      .+.-.                  
T Consensus       182 ---~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  182 ---LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             ---eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence               223347899999999999999988885 79999999998874100000      00000                  


Q ss_pred             ---cccCCCcceee--------CCcCC-ceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc
Q 021160          136 ---LQKREEPQVYS--------GHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH  203 (316)
Q Consensus       136 ---~~~~~~~~~~~--------~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~  203 (316)
                         ..+.+.+....        .+... ..|.++.+ +..=.+.|+|+-||+|.|||+...++...+ .|...|..+.|-
T Consensus       259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~  336 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWL  336 (399)
T ss_pred             EEccccceEEEecCCCCccccccchhhhhhhhhccc-ccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEc
Confidence               11111111111        11111 11333333 445567899999999999999977765555 488899999999


Q ss_pred             CCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          204 PHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       204 p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      + ..+|++++.+|.|+.||.+++. ..+..+|...|+..+ .+++.+++++++.|++.+++.+.
T Consensus       337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence            8 7889999999999999999998 778899999998888 78899999999999999999864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=191.91  Aligned_cols=215  Identities=17%  Similarity=0.285  Sum_probs=180.3

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+.+++|||+.+..+...+..           |...|.++...+   .++++|+.|.+|++|++.++.            
T Consensus       269 ~D~t~rvWd~~sg~C~~~l~g-----------h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~------------  322 (537)
T KOG0274|consen  269 TDKTERVWDCSTGECTHSLQG-----------HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA------------  322 (537)
T ss_pred             cCCcEEeEecCCCcEEEEecC-----------CCceEEEEEccC---ceEeeccCCceEEEEeccCcc------------
Confidence            367899999999999888764           788899999876   678999999999999999887            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +...+ .+|..+|.++..+  +.++++ +.|++|.+||+.++                ++++.+.+|...  |.++.+
T Consensus       323 --~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------------~cl~sl~gH~~~--V~sl~~  379 (537)
T KOG0274|consen  323 --CLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------------KCLKSLSGHTGR--VYSLIV  379 (537)
T ss_pred             --eEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhc----------------eeeeeecCCcce--EEEEEe
Confidence              44444 6699999999988  556666 57999999999988                899999999977  999977


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-Ccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAE  236 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~  236 (316)
                       .+. ..+++|+.|+.|++||+.+. +++..+.+|.+.+..+.+  .+++|++++.|++|++||...+. +..+.+ |..
T Consensus       380 -~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~  455 (537)
T KOG0274|consen  380 -DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVG  455 (537)
T ss_pred             -cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcc
Confidence             443 89999999999999999999 999999999998877665  57789999999999999999887 666666 445


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .+.... ..  ...+++.+.++.+++||++.+...
T Consensus       456 ~v~~l~-~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  456 GVSALA-LG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             cEEEee-cC--cceEEEEecCCeeEEEecccCchh
Confidence            554443 22  468899999999999999987543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=175.45  Aligned_cols=248  Identities=10%  Similarity=0.158  Sum_probs=199.3

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||..+|.+++=+|.....+++|+.||.|++||+....              |...+ ..|.+.|..+.+.. +.++.+|
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tvg  126 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTVG  126 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEec
Confidence            58999999999999877889999999999999999776              44444 88999999999987 5566668


Q ss_pred             cCCcEEEEEcCCCC----------------------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEE
Q 021160          111 NDELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYV  167 (316)
Q Consensus       111 ~d~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l  167 (316)
                      .|++|+.|.++...                      ...-..+.+|+.....+++.+.-..+.  |.++.| +|. ...|
T Consensus       127 dDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsIL  203 (433)
T KOG0268|consen  127 DDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSIL  203 (433)
T ss_pred             CCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchhe
Confidence            99999999865432                      111122446667666777777765544  999999 554 5567


Q ss_pred             EEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecC
Q 021160          168 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQG  245 (316)
Q Consensus       168 ~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~  245 (316)
                      +++..|+.|.+||+++++++..+.. ...-+.++|+|..-.|++|++|..++.||.+...  +....+|..+++... ++
T Consensus       204 as~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fs  281 (433)
T KOG0268|consen  204 ASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FS  281 (433)
T ss_pred             eeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cC
Confidence            7777999999999999998876643 3455789999976669999999999999998766  777889999999888 89


Q ss_pred             CCCceeEEecCCCeEEEEEecccCcc----------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160          246 REDHSRITLTPDVIMHVLRLQRRQTL----------AYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       246 ~~~~~~~s~~~d~~~~~w~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      +.|.-+++++.|.+|+++....++..          ++. .++.+..++.++++++-|-+|-..-
T Consensus       282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            99999999999999999998765322          222 6888999999999999999886543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=7.8e-26  Score=168.28  Aligned_cols=201  Identities=15%  Similarity=0.218  Sum_probs=170.2

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  111 (316)
                      |+.-|.+++|+.+. ++|++|+.+..+|+||++..+              .+..-..+|.+.|..+.|....+.+++ +.
T Consensus        99 hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~--------------App~E~~ghtg~Ir~v~wc~eD~~iLSSad  163 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPK--------------APPKEISGHTGGIRTVLWCHEDKCILSSAD  163 (334)
T ss_pred             hhheeeeEEecccc-hhhhccchHHHhhhhhccCCC--------------CCchhhcCCCCcceeEEEeccCceEEeecc
Confidence            77789999999988 899999999999999999776              333334899999999999998876665 68


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      |++|++||.+++                ..++.+.-...   |+++.. +++|.+|.++ ..+.|.+||..+..++..+.
T Consensus       164 d~tVRLWD~rTg----------------t~v~sL~~~s~---VtSlEv-s~dG~ilTia-~gssV~Fwdaksf~~lKs~k  222 (334)
T KOG0278|consen  164 DKTVRLWDHRTG----------------TEVQSLEFNSP---VTSLEV-SQDGRILTIA-YGSSVKFWDAKSFGLLKSYK  222 (334)
T ss_pred             CCceEEEEeccC----------------cEEEEEecCCC---Ccceee-ccCCCEEEEe-cCceeEEeccccccceeecc
Confidence            999999999998                67777764332   899998 8999877654 56789999999988888776


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      . ...|.+...+|+...++.|++|..++.||..++. +... .+|..++..+- ++|++...++++.||+|++|.+.-++
T Consensus       223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr-FSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR-FSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE-ECCCCceeeccCCCceEEEEEecCCC
Confidence            4 3578999999999999999999999999999987 4443 78888887666 99999999999999999999987765


Q ss_pred             cc
Q 021160          270 TL  271 (316)
Q Consensus       270 ~~  271 (316)
                      ..
T Consensus       301 ~~  302 (334)
T KOG0278|consen  301 TY  302 (334)
T ss_pred             ch
Confidence            54

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=186.69  Aligned_cols=240  Identities=17%  Similarity=0.210  Sum_probs=190.7

Q ss_pred             ceeeEEEEeeCCCcceEEE-eccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFY-CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|.|++|+.......+... ....+      .|..-|+.++...++ +.|++++.|.+|++|+.....            
T Consensus        46 Dg~i~~W~~~~d~~~~s~~~~asme------~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------------  106 (735)
T KOG0308|consen   46 DGIIRLWSVTQDSNEPSTPYIASME------HHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------------  106 (735)
T ss_pred             CceEEEeccccccCCcccchhhhhh------hhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------------
Confidence            6899999998665432221 22222      388999999999888 899999999999999998653            


Q ss_pred             ecccccccCCCcccEEEEEE-ccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeE
Q 021160           81 TFCPRHLIGKNNIHITGLAY-SNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGV  157 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  157 (316)
                      .+|..++ ..|.+.|.|+++ .++..++|++ -|+.|.+||++.+......++  ..    .....+. ++...  |+++
T Consensus       107 ~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~--n~----~t~~sl~sG~k~s--iYSL  177 (735)
T KOG0308|consen  107 TFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF--NN----VTVNSLGSGPKDS--IYSL  177 (735)
T ss_pred             chhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc--cc----cccccCCCCCccc--eeee
Confidence            2366666 889999999999 6666788885 699999999997732100000  00    1112222 66655  9999


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      +. .+.|..|++|+..+.+++||.++++.+..+.+|+..|..+..+++|..++++|.||+|++||+..++ +.++..|.+
T Consensus       178 A~-N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  178 AM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             ec-CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            98 8999999999999999999999999999999999999999999999999999999999999999877 778888888


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .+.... .+++-..+.+|+.|+.|..-++.+....
T Consensus       257 ~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~  290 (735)
T KOG0308|consen  257 GVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKS  290 (735)
T ss_pred             ceEEEe-eCCCcceEEecCCCCcEEecccCCchhh
Confidence            876665 4566778999999999999999885333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=6.4e-24  Score=159.01  Aligned_cols=224  Identities=13%  Similarity=0.164  Sum_probs=174.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +++|.||++...+..+..         ...||.+.|-.++|+|..+.+|++++.|.+|++||++.+++            
T Consensus        41 dktv~v~n~e~~r~~~~~---------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~------------   99 (313)
T KOG1407|consen   41 DKTVSVWNLERDRFRKEL---------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC------------   99 (313)
T ss_pred             CCceEEEEecchhhhhhh---------cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE------------
Confidence            578889988765322111         22479999999999999989999999999999999999883            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        ...+ .. ...-.-+.|+|+|++++.+ .|..|...|.++.                +...... ..  ..+..++| 
T Consensus       100 --~~~i-~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----------------~~~~~~~-~~--~e~ne~~w-  155 (313)
T KOG1407|consen  100 --TARI-ET-KGENINITWSPDGEYIAVGNKDDRITFIDARTY----------------KIVNEEQ-FK--FEVNEISW-  155 (313)
T ss_pred             --EEEe-ec-cCcceEEEEcCCCCEEEEecCcccEEEEEeccc----------------ceeehhc-cc--ceeeeeee-
Confidence              2222 11 2233457899999977775 7999999999876                3333322 12  23778888 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      +.++.+++..+..|.|.|.....-+++..+++|.....++.|+|+|++||+|+.|..+.+||+...- .+.+..+.-++.
T Consensus       156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR  235 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR  235 (313)
T ss_pred             cCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence            5667777776778999999999999999999999999999999999999999999999999998765 555555555554


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .+. ++-+++++++++.|--|-+-+++++.+.
T Consensus       236 TlS-FS~dg~~lASaSEDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  236 TLS-FSHDGRMLASASEDHFIDIAEVETGDRV  266 (313)
T ss_pred             EEE-eccCcceeeccCccceEEeEecccCCeE
Confidence            444 8899999999999999888888887554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-23  Score=161.02  Aligned_cols=232  Identities=14%  Similarity=0.179  Sum_probs=186.0

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEec-
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-  111 (316)
                      .+.|+++.|+++| .++++++.|..++|||..+++              +.+.+ ..+...+..+.|..... .+.++. 
T Consensus        14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~--------------~~~ti-~skkyG~~~~~Fth~~~~~i~sStk   77 (311)
T KOG1446|consen   14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGK--------------QVKTI-NSKKYGVDLACFTHHSNTVIHSSTK   77 (311)
T ss_pred             CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCc--------------eeeEe-ecccccccEEEEecCCceEEEccCC
Confidence            5689999999999 899999999999999999887              44444 44556678888876665 555543 


Q ss_pred             -CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          112 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       112 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                       |.+|+..++.+.                +.++.|.||...  |.+++. +|.+..+++++.|++|++||++..++...+
T Consensus        78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence             999999999988                789999999976  999998 899999999999999999999988887777


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .....  ..++|.|+|-++|++.....|++||++.-.   ..+  +......-+....++++|..++-.+..+.+.+.|.
T Consensus       139 ~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  139 NLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             ecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence            54333  347899999999999888899999998653   222  22222333455668999999999999998888886


Q ss_pred             cccC-------------cceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          266 QRRQ-------------TLAYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       266 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      -++.             .+.-..+.|++..+.+++++|++++|+...+..
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence            5542             222336889999999999999999999988765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.3e-24  Score=159.95  Aligned_cols=226  Identities=15%  Similarity=0.199  Sum_probs=173.5

Q ss_pred             CceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEEC-C-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            1 MVLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVID-P-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~-~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      .++.|+|+..+.+.. ..+..+         .||+++|..++|. | .| .+||+++.||+|.||.-..++.        
T Consensus        31 SD~tVkIf~v~~n~~s~ll~~L---------~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w--------   92 (299)
T KOG1332|consen   31 SDGTVKIFEVRNNGQSKLLAEL---------TGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRW--------   92 (299)
T ss_pred             CCccEEEEEEcCCCCceeeeEe---------cCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCch--------
Confidence            378999999998765 333322         3799999999995 4 45 8999999999999999988764        


Q ss_pred             CceecccccccCCCcccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                           ........|...|++++|.|.+-  .|++ ++||.|.+++.+....             ....+....|...  +
T Consensus        93 -----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-------------w~t~ki~~aH~~G--v  152 (299)
T KOG1332|consen   93 -----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------------WTTSKIVFAHEIG--V  152 (299)
T ss_pred             -----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-------------ccchhhhhccccc--c
Confidence                 23334478999999999999764  6666 5899999999875410             0233455678866  9


Q ss_pred             eeEEEecCC---C-----------cEEEEeccCCeEEEEeccCCe--eEEEeecCccceEEEEEcCCC----CeEEEEeC
Q 021160          155 KGVNFFGPN---D-----------EYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGI  214 (316)
Q Consensus       155 ~~~~~~~~~---~-----------~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~l~s~~~  214 (316)
                      ++++| .|.   |           +.|++|+.|..|++|+...++  ...+|.+|.+.|..++|.|..    .+||+++.
T Consensus       153 nsVsw-apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  153 NSVSW-APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             ceeee-cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence            99998 665   3           569999999999999998763  345688999999999999965    35999999


Q ss_pred             CCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          215 EKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       215 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ||++.||......    ...+......++... |+..++.|+....|+.+.+|.-.
T Consensus       232 Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vS-WS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  232 DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS-WSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CCcEEEEEecCccCcccccccccCCcceEEEE-EeccccEEEEecCCcEEEEEEeC
Confidence            9999999876331    223334455555555 88889999999999999999643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=176.01  Aligned_cols=268  Identities=11%  Similarity=0.095  Sum_probs=184.7

Q ss_pred             CceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            1 MVLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      ++-+|+.||+..... .+.|+.....       -...|+++.|++.+ ..|++.+...+.+|+|....++...++...-|
T Consensus       187 ~Dy~v~~wDf~gMdas~~~fr~l~P~-------E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI  258 (641)
T KOG0772|consen  187 LDYTVKFWDFQGMDASMRSFRQLQPC-------ETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI  258 (641)
T ss_pred             ccceEEEEecccccccchhhhccCcc-------cccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence            356899999976542 2333322222       24479999999999 67777777789999998766544333333323


Q ss_pred             eecccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc---CCcee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTV  154 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i  154 (316)
                      ..+   ....+|...++|.+|+|..+  +|.++.|++++|||++...               +..+.+....   ....+
T Consensus       259 ~Dm---~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  259 RDM---YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             hhh---hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch---------------hheeEEeeccCCCcccCc
Confidence            221   22378999999999999875  6666789999999998763               2334443222   11237


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEeccCCee---EEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--  227 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--  227 (316)
                      +.++| ++++.+||+|+.||.|.+|+......   ...-.+|..  .|+++.||++|++|++-+.|+++++||++..+  
T Consensus       321 tsC~~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  321 TSCAW-NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             eeeec-CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            88998 99999999999999999999753221   233346776  89999999999999999999999999998765  


Q ss_pred             CCCCCCCccc-ceeeeecCCCCceeEEecCC------CeEEEEEecccCcc----------eeEEeecccccccccCCCC
Q 021160          228 FPPLPDNAEK-IMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEG  290 (316)
Q Consensus       228 ~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d------~~~~~w~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  290 (316)
                      +....+-... ...-+.++++..++++|++-      +.+.+++..+-+..          +...+-|....+..+..+|
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG  479 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence            3333332221 23344589999999998753      77888876543211          1124556666666666667


Q ss_pred             eEEEE
Q 021160          291 ETYLL  295 (316)
Q Consensus       291 ~v~~~  295 (316)
                      .++++
T Consensus       480 ~~~vy  484 (641)
T KOG0772|consen  480 TAHVY  484 (641)
T ss_pred             ceEEE
Confidence            77766

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=3.2e-25  Score=165.06  Aligned_cols=178  Identities=17%  Similarity=0.233  Sum_probs=149.5

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      ..|||||++..++.+.-.          .||++.|..+-|.... +.|++.+.|++||+||.+++...+.          
T Consensus       122 kllrvfdln~p~App~E~----------~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~s----------  180 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAPPKEI----------SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQS----------  180 (334)
T ss_pred             HHhhhhhccCCCCCchhh----------cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEE----------
Confidence            457888887766544322          2589999999999988 8899999999999999999973321          


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  162 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  162 (316)
                          +  ....+|+++.++++|++|..+..+.|..||..+.                .+++.+.-..+   |.+.+. +|
T Consensus       181 ----L--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf----------------~~lKs~k~P~n---V~SASL-~P  234 (334)
T KOG0278|consen  181 ----L--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF----------------GLLKSYKMPCN---VESASL-HP  234 (334)
T ss_pred             ----E--ecCCCCcceeeccCCCEEEEecCceeEEeccccc----------------cceeeccCccc---cccccc-cC
Confidence                1  1256789999999999999998999999999876                56666554333   888888 89


Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +..++++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|...++||+||+|++|....++
T Consensus       235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9999999999999999999999998886 8999999999999999999999999999999987665

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.6e-24  Score=190.51  Aligned_cols=216  Identities=17%  Similarity=0.300  Sum_probs=172.6

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC---CCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI---SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      .|.+.|+|+.|+|+| .+||+|+.|+.|.+|...........   .....++.+.......+|...|..++|+|++.+|+
T Consensus        67 ~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             cccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence            489999999999999 99999999999999998841110111   11223444444455588999999999999999999


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      ++ .|++|.+||..+.                +.+..+.+|...  |..+.| .|-|+||++-++|++|++|...+....
T Consensus       146 S~s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             EecccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEcccceee
Confidence            95 6999999999988                789999999977  999999 999999999999999999995532111


Q ss_pred             E----------------------------------------------------EeecCccceEEEEEcCC-----CC---
Q 021160          188 R----------------------------------------------------LMVGDRHVVNQLEPHPH-----IP---  207 (316)
Q Consensus       188 ~----------------------------------------------------~~~~~~~~v~~~~~~p~-----~~---  207 (316)
                      +                                                    .|-+|..++.++.|+|.     .+   
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence            1                                                    45688999999999982     12   


Q ss_pred             ---------eEEEEeCCCcEEEecCCCCC-CCCCCC-CcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          208 ---------MFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       208 ---------~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                               .+|+||.|++|-||.....+ +..... ....++.+. |+++|..|+.+|.||+|.++.+++.
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms-WspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMS-WSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeee-EcCCCCeEEEEecCCeEEEEEcchH
Confidence                     58899999999999986665 222222 345565665 9999999999999999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=6.8e-25  Score=171.26  Aligned_cols=230  Identities=10%  Similarity=0.151  Sum_probs=173.1

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC------
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS------   74 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~------   74 (316)
                      .+|.|++||+.+..+...+.+           |.+.|..++++.   ..+++++.|.+|+.|-++.. ...++.      
T Consensus        87 ~DG~VkiWnlsqR~~~~~f~A-----------H~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~  151 (433)
T KOG0268|consen   87 CDGEVKIWNLSQRECIRTFKA-----------HEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYL  151 (433)
T ss_pred             cCceEEEEehhhhhhhheeec-----------ccCceeeEEecc---cceEEecCCcceeeeeccCC-cceeeecccccc
Confidence            489999999999888777776           688999999987   46889999999999986532 111110      


Q ss_pred             -------------CCCCceec------ccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCc
Q 021160           75 -------------SDTPVDTF------CPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSP  133 (316)
Q Consensus        75 -------------~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~  133 (316)
                                   ..+.+.-+      ....+ .--.+.|.++.|+|-.. +|+++ +|+.|.+||+++.          
T Consensus       152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~----------  220 (433)
T KOG0268|consen  152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA----------  220 (433)
T ss_pred             ccccccccccccccCceeeecccccCCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecccC----------
Confidence                         00001100      00111 22345788999999876 67775 8999999999988          


Q ss_pred             cccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEE
Q 021160          134 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATC  212 (316)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~  212 (316)
                            .+++.+.-..-   .+.++| +|.+-.+++|++|..++.||++. ..++....+|.+.|.++.|+|.|+-|++|
T Consensus       221 ------~Pl~KVi~~mR---TN~Isw-nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  221 ------SPLKKVILTMR---TNTICW-NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             ------Cccceeeeecc---ccceec-CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence                  55555442221   567888 88888899999999999999886 35677788999999999999999999999


Q ss_pred             eCCCcEEEecCCCCCCCCCCCCc---ccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          213 GIEKTVKLWAPMPTDFPPLPDNA---EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       213 ~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      |.|.+|+||..+.+....+. |.   ..++... |+.|..++++||.|+.|++|.-.-.
T Consensus       291 syDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk-~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVK-YSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             cccceEEEeecCCCcchhhh-hHhhhheeeEEE-EeccccEEEecCCCcceeeeecchh
Confidence            99999999999887644333 32   3344444 8899999999999999999986543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4e-23  Score=151.92  Aligned_cols=205  Identities=16%  Similarity=0.186  Sum_probs=168.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC----CCe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SEL  106 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~  106 (316)
                      +.|++.|.|.+|+|.| .++++|+.|.+|++.-++...+...          -..-...-|.+.|..++|..+    +.+
T Consensus        86 khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             cccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceE
Confidence            4699999999999999 8999999999999987764432110          011112568899999999754    347


Q ss_pred             EEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160          107 LISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       107 l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      |+++  .|..|++-|...+                ...+.+.+|+.-  |.++-  +-++-.+++|+.|.+|++||++-.
T Consensus       155 l~s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilaly--swn~~m~~sgsqdktirfwdlrv~  214 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILALY--SWNGAMFASGSQDKTIRFWDLRVN  214 (350)
T ss_pred             EEecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEEE--EecCcEEEccCCCceEEEEeeecc
Confidence            7874  5888888888888                688999999966  77763  557899999999999999999988


Q ss_pred             eeEEEeec--C-----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160          185 KLVRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       185 ~~~~~~~~--~-----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      .++..+..  |     .+.|.+++..|.|++|++|-.|....+||++.+. ++.+..|...+... .+++.-.++++++.
T Consensus       215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~v-rfsp~a~yllt~sy  293 (350)
T KOG0641|consen  215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCV-RFSPGAHYLLTCSY  293 (350)
T ss_pred             ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEE-EeCCCceEEEEecc
Confidence            88877642  2     2579999999999999999999999999999998 88888888887544 48998999999999


Q ss_pred             CCeEEEEEecc
Q 021160          257 DVIMHVLRLQR  267 (316)
Q Consensus       257 d~~~~~w~~~~  267 (316)
                      |..|++-|++.
T Consensus       294 d~~ikltdlqg  304 (350)
T KOG0641|consen  294 DMKIKLTDLQG  304 (350)
T ss_pred             cceEEEeeccc
Confidence            99999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=175.20  Aligned_cols=222  Identities=13%  Similarity=0.212  Sum_probs=176.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|+|||+.+......+..           |..+|....|+|++...+++|+.|+.+++||+.+..             
T Consensus        89 sG~V~vfD~k~r~iLR~~~a-----------h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------  144 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLYA-----------HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------  144 (487)
T ss_pred             cCcEEEeccccHHHHHHHhh-----------ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------
Confidence            58999999665444444443           788999999999987889999999999999999775             


Q ss_pred             cccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       . ...+.+|++.|.|.+|+|... ++++| .||+|++||++...               ..+..+ .|..+  |.++.+
T Consensus       145 -v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---------------~~v~el-nhg~p--Ve~vl~  204 (487)
T KOG0310|consen  145 -V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---------------SRVVEL-NHGCP--VESVLA  204 (487)
T ss_pred             -E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---------------ceeEEe-cCCCc--eeeEEE
Confidence             2 222389999999999999765 77775 69999999998761               122333 45655  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  237 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  237 (316)
                       -|.|..|++++ ...|++||+-+ ++.+..+..|...|+|+++..++..|++++-|+.|++||+..-+ +..+ ....+
T Consensus       205 -lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~p  281 (487)
T KOG0310|consen  205 -LPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGP  281 (487)
T ss_pred             -cCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccc
Confidence             78889999887 46799999985 45555666699999999999999999999999999999977776 4444 37788


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +++++ .++++..++.|-.+|.+.+-+...++++
T Consensus       282 vLsia-vs~dd~t~viGmsnGlv~~rr~~~k~k~  314 (487)
T KOG0310|consen  282 VLSIA-VSPDDQTVVIGMSNGLVSIRRREVKKKP  314 (487)
T ss_pred             eeeEE-ecCCCceEEEecccceeeeehhhcccCC
Confidence            88888 7888999999999999888765544333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=3.1e-24  Score=163.43  Aligned_cols=215  Identities=16%  Similarity=0.217  Sum_probs=163.4

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc--cccccCCCcccEEEEEEccCCC-eEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LLI  108 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~  108 (316)
                      .|.+.|+++.+.+...+++++|+.||.|.+||++...-..  ...--.+..|  .+.-..+|.-.|..+.|-|-.. ++.
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e--~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE--ASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchh--hccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            5899999999999887999999999999999997543000  0000111122  2233367899999999999665 666


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC---CcEEEEeccCCeEEEEeccCC
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      ++ -|.++++||..+.                +....|+ ..  ..|.+-++ +|-   .-++++|..+-.|++.|+.+|
T Consensus       119 ssSFDhtlKVWDtnTl----------------Q~a~~F~-me--~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTL----------------QEAVDFK-ME--GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             cccccceEEEeecccc----------------eeeEEee-cC--ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccCC
Confidence            65 5999999999876                3333333 12  23666666 553   458899999999999999999


Q ss_pred             eeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC--CCCC--------------CCCCcccceeeeecCCC
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPP--------------LPDNAEKIMKANKQGRE  247 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~--~~~~--------------~~~~~~~~~~~~~~~~~  247 (316)
                      ..-+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++..  +...              -..|...+..++ |..+
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla-~tSd  257 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA-WTSD  257 (397)
T ss_pred             cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee-eccc
Confidence            999999999999999999999888 899999999999998743  1221              223455555555 7788


Q ss_pred             CceeEEecCCCeEEEEEecccC
Q 021160          248 DHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       248 ~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      +.++++.+.|..+++|+...+.
T Consensus       258 ~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  258 ARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             chhhhhccCccceEEeecccCc
Confidence            9999999999999999988763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.7e-25  Score=185.95  Aligned_cols=206  Identities=19%  Similarity=0.211  Sum_probs=161.0

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEe-cCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~  113 (316)
                      .+..+.|+....++||+++..|.|.+||+.....       .     .....+..|...++++.|++.. .+|++| .||
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------n-----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg  156 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------N-----KLLTVFNEHERSANKLDFHSTEPNILISGSQDG  156 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc-------c-----hhhhHhhhhccceeeeeeccCCccEEEecCCCc
Confidence            4567888876668999999999999999986210       0     2223447899999999999976 477775 699


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEeec
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~  192 (316)
                      +|++||++..                +...++.+....  |.+|.|.+..+.+++++.+.|.+.+||++.. ++...+.+
T Consensus       157 ~vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A  218 (839)
T KOG0269|consen  157 TVKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA  218 (839)
T ss_pred             eEEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence            9999999987                677778876644  9999995556889999999999999999864 45667889


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC-CCCCcccceeeeecCCCC-ceeEEec--CCCeEEEEEeccc
Q 021160          193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDNAEKIMKANKQGRED-HSRITLT--PDVIMHVLRLQRR  268 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~s~~--~d~~~~~w~~~~~  268 (316)
                      |.++|.++.|||++.+|||||.|++|+|||..+.+... ..-+.-..+....|.|+. ..|++++  .|..|+|||+++.
T Consensus       219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            99999999999999999999999999999998765222 222333344555566654 4455443  5899999999998


Q ss_pred             Ccc
Q 021160          269 QTL  271 (316)
Q Consensus       269 ~~~  271 (316)
                      -.+
T Consensus       299 YIP  301 (839)
T KOG0269|consen  299 YIP  301 (839)
T ss_pred             ccc
Confidence            665

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.1e-24  Score=160.12  Aligned_cols=235  Identities=13%  Similarity=0.158  Sum_probs=182.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc--CCCeEEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLIS  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s  109 (316)
                      .|+..|..+..+--| ..||++++|++|+|+.++...-           ...+.++ .+|.++|..++|..  .|.+|++
T Consensus         9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~-----------s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQ-----------SKLLAEL-TGHSGPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCC-----------ceeeeEe-cCCCCCeeEEeecccccCcEeeE
Confidence            488899988888888 8999999999999999986541           0122233 89999999999976  6889999


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccCC-e
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K  185 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~~-~  185 (316)
                      + .||+|.||.-+++.              ......+..|...  +++++| .|.  |-.|++++.||.|.+.+.+.. .
T Consensus        76 csYDgkVIiWke~~g~--------------w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~  138 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGR--------------WTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGG  138 (299)
T ss_pred             eecCceEEEEecCCCc--------------hhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCC
Confidence            6 69999999988771              1334556677765  999999 665  567899999999999998754 1


Q ss_pred             --eEEEeecCccceEEEEEcCC---C-----------CeEEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCC
Q 021160          186 --LVRLMVGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       186 --~~~~~~~~~~~v~~~~~~p~---~-----------~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~  246 (316)
                        .......|.-.|++++|.|-   |           +.|++|+.|..|+||+.....   ..+|.+|.+.+...+|.+.
T Consensus       139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS  218 (299)
T ss_pred             ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence              22345679999999999996   4           459999999999999998865   4568899999988885443


Q ss_pred             ---CCceeEEecCCCeEEEEEecccC------------cceeE-EeecccccccccCCCCeEEEEe
Q 021160          247 ---EDHSRITLTPDVIMHVLRLQRRQ------------TLAYR-ERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       247 ---~~~~~~s~~~d~~~~~w~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                         ....+++++.|+.+.+|......            -.+|. .++..+..++....+..|.+|-
T Consensus       219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence               24578999999999999876321            11233 5777788888777777788774

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.9e-23  Score=166.70  Aligned_cols=226  Identities=16%  Similarity=0.253  Sum_probs=188.3

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~  113 (316)
                      ..+.++...|.. ..+++|+.|..+.++|..+.+.              . .++.+|...|+.+.++|+...+++ +.|.
T Consensus       220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~--------------l-~~~~Gh~kki~~v~~~~~~~~v~~aSad~  283 (506)
T KOG0289|consen  220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQI--------------L-ATLKGHTKKITSVKFHKDLDTVITASADE  283 (506)
T ss_pred             CCeeEEeecCCC-CcceecCCCCceEEEecchhhh--------------h-hhccCcceEEEEEEeccchhheeecCCcc
Confidence            468899999874 7999999999999999998862              2 233899999999999999876666 5799


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec-
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-  192 (316)
                      .|++|.....                ........|..+  |+.+.. +|.|.||+++++|++..+.|++++.++..... 
T Consensus       284 ~i~vws~~~~----------------s~~~~~~~h~~~--V~~ls~-h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  284 IIRVWSVPLS----------------SEPTSSRPHEEP--VTGLSL-HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             eEEeeccccc----------------cCcccccccccc--ceeeee-ccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence            9999998776                455667778866  999998 89999999999999999999999998776653 


Q ss_pred             -CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          193 -DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       193 -~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                       ..-.+++++|||||.+|.+|..|+.|+|||+..+. ...+++|..++..+. ++.+|-++++.+.|+.|++||++....
T Consensus       345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~-FsENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAIS-FSENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEE-eccCceEEEEEecCCeEEEEEehhhcc
Confidence             22468999999999999999999999999999887 888999999986666 888999999999999999999986432


Q ss_pred             ce-----------eEEeecccccccccCCCCeEEEEe
Q 021160          271 LA-----------YRERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       271 ~~-----------~~~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                      ..           -..+...+.++...+.+=+||.+.
T Consensus       424 ~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  424 FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             cceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            21           125666777887777775555555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=167.16  Aligned_cols=203  Identities=17%  Similarity=0.193  Sum_probs=166.1

Q ss_pred             cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      .++||...|+.+.|+|+. ..+++++.|..|++|......              + ......|..+|+.+..+|.|.+|+
T Consensus       256 ~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~-~~~~~~h~~~V~~ls~h~tgeYll  319 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------E-PTSSRPHEEPVTGLSLHPTGEYLL  319 (506)
T ss_pred             hccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------------C-ccccccccccceeeeeccCCcEEE
Confidence            346899999999999998 899999999999999988664              2 233378999999999999999888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      ++ +|++..+.|++++                ..+.......+...+++.+| +|||-++.+|+.|+.+++||+.++..+
T Consensus       320 sAs~d~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~  382 (506)
T KOG0289|consen  320 SASNDGTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNV  382 (506)
T ss_pred             EecCCceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCcccc
Confidence            84 7999999999988                44444443233344899999 999999999999999999999999999


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      ..|++|+++|..++|+.+|-+||+++.|+.|++||++..+ ..++.-....-.....+...+.+++.++.+-.|.+..
T Consensus       383 a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  383 AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            9999999999999999999999999999999999999876 4444432222223333677788999987777666665

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.5e-24  Score=168.91  Aligned_cols=195  Identities=16%  Similarity=0.229  Sum_probs=152.3

Q ss_pred             ceeeEEEEeeCCC-----cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCC
Q 021160            2 VLFNMLFDLRSDS-----ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         2 ~g~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~   76 (316)
                      .|.|+|||+...-     +.........++...+.+|.+.=++++|+|.....+++|..-+.|++|...++.+..     
T Consensus       174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----  248 (440)
T KOG0302|consen  174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----  248 (440)
T ss_pred             cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee-----
Confidence            4899999996421     111222244445556678999999999999664579999888999999999887531     


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                            -...+ .+|+..|..+.|+|..+ +|+++ .|++|+|||++.+..              +.....+.|...  |
T Consensus       249 ------d~~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--------------~~~~~~kAh~sD--V  305 (440)
T KOG0302|consen  249 ------DQRPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--------------KAAVSTKAHNSD--V  305 (440)
T ss_pred             ------cCccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--------------cceeEeeccCCc--e
Confidence                  12222 56999999999999875 78885 699999999998721              223334667755  9


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEeccC---CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~  225 (316)
                      +-+.| +..-.+|++|++||+++|||++.   ++++..++-|..+|+++.|+|... .|++++.|..|.+||+..
T Consensus       306 NVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  306 NVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eeEEc-cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999 77777999999999999999874   678889999999999999999764 488888999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4e-24  Score=164.54  Aligned_cols=253  Identities=13%  Similarity=0.225  Sum_probs=194.9

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||+..|..++-.... ..+.+++.|.+.+||.++++.              |+... .+|.+.|++++|++.+.+++++
T Consensus       145 ~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTa  208 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTA  208 (481)
T ss_pred             cccccceeeehhhcCC-cceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEc
Confidence            4899999999998876 599999999999999999998              55555 8999999999999999988884


Q ss_pred             -cCCcEEEEEcC----CCCCCCCccCCccc--------------------cccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160          111 -NDELVYLFEKN----MGLGPSPLSLSPED--------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDE  165 (316)
Q Consensus       111 -~d~~i~iwd~~----~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  165 (316)
                       .|++.+||...    .+....+...+.++                    ..-+.++..+.+|...  |.+..| -..|+
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~  285 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQ  285 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCcc
Confidence             79999999832    11111111111111                    1112355677888866  888888 67899


Q ss_pred             EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeee
Q 021160          166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANK  243 (316)
Q Consensus       166 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~  243 (316)
                      .+++++.|.+..+||+++|+++..+.+|....+.++-+|..+++++++.|-+.++||++..-  +..+.+|.+.+.... 
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v-  364 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV-  364 (481)
T ss_pred             eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE-
Confidence            99999999999999999999999999999999999999999999999999999999998543  667889999886665 


Q ss_pred             cCCCCceeEEecCCCeEEEEEecccCcceeE--Eeec--------ccccccccCCCCeEEEEeccCCCCCC
Q 021160          244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYR--ERRY--------NAADFESDEEEGETYLLGFSDSDASS  304 (316)
Q Consensus       244 ~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~  304 (316)
                      +.. +..+++++.|.++++|++++-..+...  ..++        ....++..-+...|-++|++...-.-
T Consensus       365 F~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  365 FNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             Eec-CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence            333 457899999999999999875444332  1111        22234444566668888887665433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.6e-24  Score=175.10  Aligned_cols=224  Identities=16%  Similarity=0.176  Sum_probs=160.3

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEE
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI  108 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  108 (316)
                      .++|...|.++++.|.| ..|++|+.|..|++||+......        ..  ..+.+.......|.++.|++.|. +|+
T Consensus       163 l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas--------~~--~fr~l~P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDAS--------MR--SFRQLQPCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             ccCCceEEEEeeecCCC-ceeeeccccceEEEEeccccccc--------ch--hhhccCcccccccceeeecCCCCeEEE
Confidence            35789999999999999 89999999999999999865421        11  12233334456789999999997 555


Q ss_pred             EecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eE
Q 021160          109 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LV  187 (316)
Q Consensus       109 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~  187 (316)
                      .+...+.+++|-..........-..    -..-+..-+||...  +++.+|++.+...+++++.||++++|++...+ ..
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQ----YI~Dm~nTKGHia~--lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQ----YIRDMYNTKGHIAE--LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccch----hhhhhhccCCceee--eeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            5778889999976541000000000    00112233577765  99999955566789999999999999987543 33


Q ss_pred             EEee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC----CCCCcc--cceeeeecCCCCceeEEecC
Q 021160          188 RLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----LPDNAE--KIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       188 ~~~~-----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~s~~~  256 (316)
                      +.++     +..-.+++++|+|+++.||+|+.||.|.+|+......+.    -..|..  .+.++ .++.++++|++-+.
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi-~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI-SFSYDGNYLLSRGF  384 (641)
T ss_pred             eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE-EeccccchhhhccC
Confidence            3333     233478999999999999999999999999986544221    223444  45444 49999999999999


Q ss_pred             CCeEEEEEecccCcc
Q 021160          257 DVIMHVLRLQRRQTL  271 (316)
Q Consensus       257 d~~~~~w~~~~~~~~  271 (316)
                      |.++++||++.-+.+
T Consensus       385 D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKKP  399 (641)
T ss_pred             CCceeeeeccccccc
Confidence            999999999875444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4e-24  Score=183.39  Aligned_cols=200  Identities=13%  Similarity=0.179  Sum_probs=159.0

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEE
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLI  108 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  108 (316)
                      +.||.+.|..++|+.++  +|++++.|.+||||++...+              |+..+  .|.+.|+|++|+|-. ++++
T Consensus       365 f~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--------------CL~~F--~HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--------------CLKVF--SHNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             hhccchhheecccccCC--eeEeccccccEEeecCCCcc--------------eeeEE--ecCCeeEEEEecccCCCcEe
Confidence            36999999999999864  99999999999999999887              44444  689999999999954 6888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      +| -|+.|+||++...                +.+. +..-..-  |++++| .|+|++.+.|+.+|.+++|+....++.
T Consensus       427 SGSLD~KvRiWsI~d~----------------~Vv~-W~Dl~~l--ITAvcy-~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDK----------------KVVD-WNDLRDL--ITAVCY-SPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             ecccccceEEeecCcC----------------eeEe-ehhhhhh--heeEEe-ccCCceEEEEEeccEEEEEEccCCeEE
Confidence            86 5999999999775                3333 3333333  999999 999999999999999999999877766


Q ss_pred             EEeec--C------ccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-CCCCCCCcccc-eeeeecCCCCceeEEecC
Q 021160          188 RLMVG--D------RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-FPPLPDNAEKI-MKANKQGREDHSRITLTP  256 (316)
Q Consensus       188 ~~~~~--~------~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~  256 (316)
                      ..+.-  |      ...|+.++|.|...- ++..+.|..|||+|.+... +..+.++...- ...+.+..++.++++++.
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence            54431  1      137999999986653 6666779999999998776 55666554332 234446779999999999


Q ss_pred             CCeEEEEEecc
Q 021160          257 DVIMHVLRLQR  267 (316)
Q Consensus       257 d~~~~~w~~~~  267 (316)
                      |..|.+|++..
T Consensus       567 Ds~VYiW~~~~  577 (712)
T KOG0283|consen  567 DSWVYIWKNDS  577 (712)
T ss_pred             CceEEEEeCCC
Confidence            99999999743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=5.2e-23  Score=154.68  Aligned_cols=207  Identities=11%  Similarity=0.096  Sum_probs=175.1

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||+.+++.+.++.+| .+|.+++.|.+..+|--..++              .+.+. .+|.+.|+|+....+.+.++++
T Consensus         7 ~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGe--------------rlGty-~GHtGavW~~Did~~s~~liTG   70 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGE--------------RLGTY-DGHTGAVWCCDIDWDSKHLITG   70 (327)
T ss_pred             ccCccccceEEecCCC-cEEEEecCCCCceEEEecCCc--------------eeeee-cCCCceEEEEEecCCcceeeec
Confidence            4799999999999999 899999999999999987776              33333 8999999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-----CCeEEEEecc--
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK--  182 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~~wd~~--  182 (316)
                       .|.++++||+.++                +.+..++...   .|..+.| +++|.+++..++     .+.|.++|++  
T Consensus        71 SAD~t~kLWDv~tG----------------k~la~~k~~~---~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~  130 (327)
T KOG0643|consen   71 SADQTAKLWDVETG----------------KQLATWKTNS---PVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDD  130 (327)
T ss_pred             cccceeEEEEcCCC----------------cEEEEeecCC---eeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence             7999999999999                6776666432   3999999 999999888765     4579999987  


Q ss_pred             -----CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEec
Q 021160          183 -----GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       183 -----~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                           ..+++..+..+.+.++.+-|.|-+++|++|.+||.|.+||+++++  +.....|...+..+ +.+++..++++++
T Consensus       131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~d~T~FiT~s  209 (327)
T KOG0643|consen  131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL-QFSRDRTYFITGS  209 (327)
T ss_pred             hhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc-cccCCcceEEecc
Confidence                 455677888888999999999999999999999999999999875  55556677766444 4889999999999


Q ss_pred             CCCeEEEEEecccCcceeE
Q 021160          256 PDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       256 ~d~~~~~w~~~~~~~~~~~  274 (316)
                      .|.+-++||+.+-+.+...
T Consensus       210 ~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  210 KDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             cCccceeeeccceeeEEEe
Confidence            9999999999886554433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1e-23  Score=185.49  Aligned_cols=256  Identities=17%  Similarity=0.241  Sum_probs=194.3

Q ss_pred             CccceEEEEECCCCCcEEEEEe--cCCcEEEEeCcCCc----ccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH----WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      +...|.++..+|++ ..+++|+  .|+.+++|+...--    ...+ ..+..+      .....|.+.|+|+.|+|+|++
T Consensus        12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~-~l~k~l------~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNE-NLPKHL------CTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhc-ccchhh------eeeccccCceeEEEECCCCCe
Confidence            34668999999999 8999999  89999999976211    0000 011111      122679999999999999999


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCcc---CCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLS---LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  182 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~  182 (316)
                      ||+| .|+.|.||..... +.....   -...+...++....+.+|...  |..++| +|++.++++++.|++|.+|+..
T Consensus        84 lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             EeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEccc
Confidence            9997 5888999998741 111111   123345566788889999977  999999 9999999999999999999999


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----------------------------------
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------------------------  227 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----------------------------------  227 (316)
                      +.+++..+.+|.+.|..+.|.|-|++||+-+.|++|+||.+..-.                                   
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            999999999999999999999999999999999999999954200                                   


Q ss_pred             ------------------CCCCCCCcccceeeeecCC-----C--------Cc----eeEEecCCCeEEEEEecccCcce
Q 021160          228 ------------------FPPLPDNAEKIMKANKQGR-----E--------DH----SRITLTPDVIMHVLRLQRRQTLA  272 (316)
Q Consensus       228 ------------------~~~~~~~~~~~~~~~~~~~-----~--------~~----~~~s~~~d~~~~~w~~~~~~~~~  272 (316)
                                        -..|-+|..++ .+..+.+     .        ++    .+++++.|+.+.||.......+.
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~-evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSAPV-EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCCce-EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence                              01122555544 2222332     1        11    57789999999999986653332


Q ss_pred             e-----------EEeecccccccccCCCCeEEEEeccCCC
Q 021160          273 Y-----------RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       273 ~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .           ..++|++..+-..+-||.|+++.|+.++
T Consensus       319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            2           2689999999999999999999998764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.8e-25  Score=188.47  Aligned_cols=200  Identities=19%  Similarity=0.265  Sum_probs=177.3

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      |...|.++..-..+ +.+++|+.|..+-+|.+....              +... +.+|..+|.++.|++...+|+++ .
T Consensus        27 hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsa   90 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSA   90 (825)
T ss_pred             hhhhhceeeeeccc-eeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhccccc
Confidence            67788888885555 899999999999999987543              2222 38999999999999998888875 7


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      +|+|++||++..                +.++++.+|...  +.++.| +|-+.|.+.|+.|..+++||.+...+...+.
T Consensus        91 sgtiK~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   91 SGTIKVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             CCceeeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeec
Confidence            999999999988                788999999977  999998 9999999999999999999999888999999


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +|...|..+.|+|+|++++.+++|.+++|||...++ ...+..|...+..+. +++..-++.+|+.|.++++|++++-
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeecccee
Confidence            999999999999999999999999999999999888 678888888887766 7777788999999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4.8e-23  Score=154.36  Aligned_cols=235  Identities=10%  Similarity=0.133  Sum_probs=190.0

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-  109 (316)
                      +|...|.+++|+.+| ..+++|+.|+++.+|+++..+.             .......+|.+.|..++|+|... ++++ 
T Consensus        18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             hhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEEe
Confidence            688999999999999 8999999999999999986652             23334478999999999999774 6665 


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      +.|++|++||.+.+                ++..........  +. +.| +|+|.+++.++.|..|.+.|.++-+....
T Consensus        84 s~dk~ir~wd~r~~----------------k~~~~i~~~~en--i~-i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~~  143 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSG----------------KCTARIETKGEN--IN-ITW-SPDGEYIAVGNKDDRITFIDARTYKIVNE  143 (313)
T ss_pred             cCCceEEEEEeccC----------------cEEEEeeccCcc--eE-EEE-cCCCCEEEEecCcccEEEEEecccceeeh
Confidence            68999999999998                677776655433  43 566 89999999999999999999998887665


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+ ....+..++|+-++.+|+..+.-|.|.|......+ +..+..|....+.+. ++|+++++++|+.|..+.+||+++-
T Consensus       144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~-f~p~GryfA~GsADAlvSLWD~~EL  221 (313)
T KOG1407|consen  144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE-FDPDGRYFATGSADALVSLWDVDEL  221 (313)
T ss_pred             hc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEE-ECCCCceEeeccccceeeccChhHh
Confidence            54 34567889999777776655557999999988776 888889998776666 8999999999999999999998753


Q ss_pred             ---------CcceeE-EeecccccccccCCCCeEEEEeccCCCC
Q 021160          269 ---------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       269 ---------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                               .=++.. .|+.++.++++.+++-.|-+.....|+.
T Consensus       222 iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  222 ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence                     122222 7899999999999997777777777653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.4e-24  Score=179.76  Aligned_cols=241  Identities=18%  Similarity=0.317  Sum_probs=186.3

Q ss_pred             CccceE---EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           33 NSIRLN---AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        33 h~~~v~---~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      |...|.   ++..++.+.++|++|+.||.|++|++....-       .+-.. +...+ ..|.+.|..++...+++-|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~-------~~s~~-~~asm-e~HsDWVNDiiL~~~~~tlIS   90 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN-------EPSTP-YIASM-EHHSDWVNDIILCGNGKTLIS   90 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccC-------Ccccc-hhhhh-hhhHhHHhhHHhhcCCCceEE
Confidence            455566   6666766658999999999999999975541       00000 12222 789999999999999986666


Q ss_pred             -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe--e
Q 021160          110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L  186 (316)
Q Consensus       110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~--~  186 (316)
                       +.|.+|++|+.....              .-+..++..|.+.  |.|+++..++..++|+|+-|+.|++||++++.  .
T Consensus        91 ~SsDtTVK~W~~~~~~--------------~~c~stir~H~DY--Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l  154 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDN--------------TFCMSTIRTHKDY--VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL  154 (735)
T ss_pred             ecCCceEEEeecccCc--------------chhHhhhhcccch--heeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence             589999999987651              0256778889866  99999856778899999999999999999772  2


Q ss_pred             EE--------Eee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160          187 VR--------LMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       187 ~~--------~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      +.        .+. ++...|.+++.++.+..|++|+..+.+++||.++.+ +..+.+|.+.+..+. ...++..++++++
T Consensus       155 ~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll-~~dDGt~~ls~sS  233 (735)
T KOG0308|consen  155 VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL-VNDDGTRLLSASS  233 (735)
T ss_pred             hhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE-EcCCCCeEeecCC
Confidence            22        233 778899999999999999999999999999999987 888999999885555 7889999999999


Q ss_pred             CCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160          257 DVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       257 d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      ||+|++|++..++=+         ++. ..++.-..+.+++.+|-||..++.+
T Consensus       234 DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  234 DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            999999999754221         232 3445556666777777777777765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-22  Score=156.00  Aligned_cols=205  Identities=13%  Similarity=0.185  Sum_probs=154.9

Q ss_pred             ccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        28 ~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      -+++||...|++++.+|-+ ..+++++.|++|++||++..++              ...+   +...-...+|.|+|-++
T Consensus        94 RYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c--------------qg~l---~~~~~pi~AfDp~GLif  155 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC--------------QGLL---NLSGRPIAAFDPEGLIF  155 (311)
T ss_pred             EEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC--------------ceEE---ecCCCcceeECCCCcEE
Confidence            3446799999999999998 8999999999999999997763              2222   11223467899999998


Q ss_pred             EEec-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160          108 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       108 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      |.+. ...|++||++....              .+..++.-. ......+.+.| +|+|++|+.++..+.+++.|.-+|.
T Consensus       156 A~~~~~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~  220 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGT  220 (311)
T ss_pred             EEecCCCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCc
Confidence            8874 44999999987521              233334322 22234899999 9999999999999999999999999


Q ss_pred             eEEEeecCccce---EEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-CcccceeeeecCCCCceeEEecCCCeE
Q 021160          186 LVRLMVGDRHVV---NQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIM  260 (316)
Q Consensus       186 ~~~~~~~~~~~v---~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~  260 (316)
                      .+..+..+...-   ...+|+|+++++++|+.||+|.+|+++++. ...+.+ +..++ .+..+.  +++.+-.+.+..+
T Consensus       221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~-~~~~fn--P~~~mf~sa~s~l  297 (311)
T KOG1446|consen  221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV-SCVRFN--PRYAMFVSASSNL  297 (311)
T ss_pred             EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc-cccccC--CceeeeeecCceE
Confidence            999988766432   578899999999999999999999999887 555555 33433 232233  3566777778888


Q ss_pred             EEEEeccc
Q 021160          261 HVLRLQRR  268 (316)
Q Consensus       261 ~~w~~~~~  268 (316)
                      -+|-....
T Consensus       298 ~fw~p~~~  305 (311)
T KOG1446|consen  298 VFWLPDED  305 (311)
T ss_pred             EEEecccc
Confidence            88865443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.9e-23  Score=175.51  Aligned_cols=250  Identities=14%  Similarity=0.192  Sum_probs=197.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEE-EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA-IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~-~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|++++|+-+..+..+.....         +|.+-|.. +++.+...-.+++|+.|+++.+|.+....            
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~---------~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~------------   92 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFE---------GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE------------   92 (745)
T ss_pred             CCceeeeeccCcccccceecc---------cCcceeeccceeccccCcceEeecccceEEEEecCCCC------------
Confidence            588999998777665543332         24556665 78876442569999999999999998664            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         +.....+|...|.+++...++. +++ +.|.++++|....                  ....+.+|+..  |+.+++
T Consensus        93 ---P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------------------l~~~l~gH~as--VWAv~~  148 (745)
T KOG0301|consen   93 ---PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------------------LVYSLQGHTAS--VWAVAS  148 (745)
T ss_pred             ---chhhhhccccceeeeecCCcCc-eEecccccceEEecchh------------------hhcccCCcchh--eeeeee
Confidence               2333389999999999888888 555 5799999998764                  45668999977  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccce
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIM  239 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  239 (316)
                       -|.+ .+++|+.|.+|++|.-  ++++++|.+|++.|..+++-|++ .|++++.||.|+.|++....+.++.+|..-++
T Consensus       149 -l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY  223 (745)
T KOG0301|consen  149 -LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY  223 (745)
T ss_pred             -cCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEE
Confidence             4555 8899999999999976  78899999999999999998875 47899999999999998888999999999998


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccCc-------ceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQT-------LAYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ... ...++..+++++.|+++++|+...-.+       .+|....-...++..+..||+|++|-.+....
T Consensus       224 sis-~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  224 SIS-MALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             EEE-ecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence            887 566778999999999999998764211       12222222356788889999999998875543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.6e-23  Score=166.39  Aligned_cols=235  Identities=14%  Similarity=0.163  Sum_probs=174.1

Q ss_pred             CceeeEEEEeeCC-CcceEEEecccccc---------ccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCccc
Q 021160            1 MVLFNMLFDLRSD-SATRLFYCSSFSEN---------SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY   70 (316)
Q Consensus         1 ~~g~v~vwd~~~~-~~~~~~~~~~~~~~---------~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~   70 (316)
                      |+-.|.||||.-. ...+.+.+......         ....||+..|.+++|+..-.+.||+|+.|.+|++||+.+++  
T Consensus       200 mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--  277 (463)
T KOG0270|consen  200 MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--  277 (463)
T ss_pred             cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--
Confidence            4557999999632 34455555422111         11247999999999999877899999999999999999997  


Q ss_pred             CCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC
Q 021160           71 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH  148 (316)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (316)
                                  +...+ ..|...|.+++|+|.. .+|++| .|++|.+.|.+...               ..-..++ .
T Consensus       278 ------------p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~---------------~s~~~wk-~  328 (463)
T KOG0270|consen  278 ------------PKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS---------------NSGKEWK-F  328 (463)
T ss_pred             ------------cceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc---------------ccCceEE-e
Confidence                        44444 6789999999999976 477775 69999999998531               1222233 2


Q ss_pred             cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160          149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~  226 (316)
                      ...  |..++|.+.....++++++||+|+-+|++. ++++.++.+|.+.|.++++++..+. ++|++.|+.|++|++...
T Consensus       329 ~g~--VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  329 DGE--VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             ccc--eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            223  888999555566788899999999999986 4899999999999999999987765 889999999999998876


Q ss_pred             CCCCCCCCcccc--eeeeecCCC-CceeEEecCCCeEEEEEeccc
Q 021160          227 DFPPLPDNAEKI--MKANKQGRE-DHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       227 ~~~~~~~~~~~~--~~~~~~~~~-~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .......|...+  +.+....++ ...++.++..+.+++||+.+.
T Consensus       407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            544443343322  222223333 446677777788999998765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.9e-23  Score=158.68  Aligned_cols=202  Identities=16%  Similarity=0.182  Sum_probs=159.9

Q ss_pred             cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--e
Q 021160           29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--L  106 (316)
Q Consensus        29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~  106 (316)
                      .+..|.+.|++++.+  + .++|+|+.|.+|+|||+++..              ....+ ..|.+.|+++.|.+.-.  .
T Consensus        38 ~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~--------------qlg~l-l~HagsitaL~F~~~~S~sh   99 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRK--------------QLGIL-LSHAGSITALKFYPPLSKSH   99 (362)
T ss_pred             cccccccceeEEEec--c-eeEeccCCCCcEEEEeccchh--------------hhcce-eccccceEEEEecCCcchhh
Confidence            345699999999997  4 799999999999999999775              22233 67899999999999863  4


Q ss_pred             EEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160          107 LIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       107 l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      |++ +.||.|.+|+...-                ..+..+++|...  |+.++. +|.+++.++.+.|+.+++||+-.|+
T Consensus       100 LlS~sdDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             eeeecCCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCc
Confidence            555 68999999999877                788999999987  999999 8999999999999999999987765


Q ss_pred             eEEEeecC---------------------------------------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          186 LVRLMVGD---------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       186 ~~~~~~~~---------------------------------------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      .-..+.-.                                       ...+.++.|- ++..|++|+.|+.|++||....
T Consensus       161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~  239 (362)
T KOG0294|consen  161 VAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD  239 (362)
T ss_pred             cceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence            32211100                                       0123444443 4557888888999999999876


Q ss_pred             C-CCCCCCCcccceeeeec-CCCCceeEEecCCCeEEEEEeccc
Q 021160          227 D-FPPLPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       227 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      . ...+..|...+-.+..+ .+++.++++.++||.|++||+...
T Consensus       240 ~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  240 TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            5 67778899888666533 347789999999999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.4e-23  Score=156.98  Aligned_cols=214  Identities=15%  Similarity=0.258  Sum_probs=158.8

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  109 (316)
                      +||.+.|++++|+.+| .+|++++.|+.|++|+++.-....        . .+++....  .+.-+.+.|.||-+ ++++
T Consensus        83 KgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e--------H-r~~R~nve--~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE--------H-RCIRQNVE--YDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh--------h-hHhhcccc--CCCceEEEECCCcceEEEE
Confidence            6899999999999999 999999999999999998543110        0 01211111  23567899999987 5555


Q ss_pred             e-cCCcEEEEEcCCCCC-CCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          110 Y-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      . ...++++|.+..... ..+.....++     ....-..|...  +..+-. ...+.+|++++.|..|.+|+++ |+.+
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D-----~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHID-----NLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCccccccc-----ccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Ccee
Confidence            4 678899998865421 1111111111     11111223322  555665 6778999999999999999999 9999


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC---CC------CCCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM---PT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      ..+......-+..+.+|+|+++++++..-.|++|.+-   .+      +...+.+|...+...+ ++++++.+++.+.||
T Consensus       222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a-Fsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA-FSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee-eCCCcceeEEEecCC
Confidence            9888776777888999999999999999999999863   22      2567889999987777 899999999999999


Q ss_pred             eEEEEEec
Q 021160          259 IMHVLRLQ  266 (316)
Q Consensus       259 ~~~~w~~~  266 (316)
                      .+++||..
T Consensus       301 ~wriwdtd  308 (420)
T KOG2096|consen  301 KWRIWDTD  308 (420)
T ss_pred             cEEEeecc
Confidence            99999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=4.1e-22  Score=149.87  Aligned_cols=246  Identities=15%  Similarity=0.150  Sum_probs=174.1

Q ss_pred             cccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc
Q 021160           23 SFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN  102 (316)
Q Consensus        23 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (316)
                      +.+......||.+.|.|+..+-+. ..+++|+.|.++++||+++++.+              ...  ....+|..+.|++
T Consensus        41 nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~l--------------a~~--k~~~~Vk~~~F~~  103 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQL--------------ATW--KTNSPVKRVDFSF  103 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEE--------------EEe--ecCCeeEEEeecc
Confidence            334444446899999999999988 89999999999999999999832              222  2256889999999


Q ss_pred             CCCeEEEec------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeE
Q 021160          103 TSELLISYN------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  176 (316)
Q Consensus       103 ~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  176 (316)
                      +|++++.+.      .+.|.++|++....         +.....+...+..+...  ++.+-| +|-+++|++|.++|.|
T Consensus       104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~W-g~l~~~ii~Ghe~G~i  171 (327)
T KOG0643|consen  104 GGNLILASTDKQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSALW-GPLGETIIAGHEDGSI  171 (327)
T ss_pred             CCcEEEEEehhhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeeee-cccCCEEEEecCCCcE
Confidence            999665543      45699999985421         11112455666666654  888888 9999999999999999


Q ss_pred             EEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160          177 FIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       177 ~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      ..||+++| +.+.....|...|+.++++|+..+++++|.|.+-++||..+..+..-..-..++ +.+..+|-...++.++
T Consensus       172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv-N~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV-NTAAISPLLDHVILGG  250 (327)
T ss_pred             EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc-cceecccccceEEecC
Confidence            99999998 455666789999999999999999999999999999999887633222233333 3333555433444433


Q ss_pred             CCCeEEEEEec-----------------------ccCcceeE-EeecccccccccCCCCeEEEEecc
Q 021160          256 PDVIMHVLRLQ-----------------------RRQTLAYR-ERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       256 ~d~~~~~w~~~-----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      .....-|--..                       .+-.++.. .+.|++...+++.++|.|-+.-|.
T Consensus       251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            33222221111                       11112222 677888888888888887776554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=1.7e-24  Score=171.56  Aligned_cols=235  Identities=14%  Similarity=0.222  Sum_probs=190.8

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  110 (316)
                      -|.+.|..+.|-++. ..|++|+.|..|++|++...+.             .......+..++|+++.|.++++ .|+++
T Consensus       173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas  238 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAAS  238 (459)
T ss_pred             ccccccceeEEccCc-chhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeec
Confidence            488999999999986 7999999999999999986652             22223366678899999999998 55557


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|+.+++|++...                ....++.+|.+.  |+++.| ......+++|+.|.++++||+..+.+..++
T Consensus       239 ~d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~  299 (459)
T KOG0288|consen  239 NDKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV  299 (459)
T ss_pred             CCCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheeccc
Confidence            8999999999988                788999999977  999998 666666999999999999999998887765


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .. .+.+..++.+  ...++++..|++||+||.++.. ...++.+. .+..+. .++++..+++++.|.++.+.|+++.+
T Consensus       300 l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~-ls~~g~~lLsssRDdtl~viDlRt~e  374 (459)
T KOG0288|consen  300 LP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLD-LSMDGLELLSSSRDDTLKVIDLRTKE  374 (459)
T ss_pred             cc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEe-eccCCeEEeeecCCCceeeeeccccc
Confidence            42 3456667665  4568899999999999999887 55555443 554444 78899999999999999999998764


Q ss_pred             ccee--------------EEeecccccccccCCCCeEEEEeccCCCCCC
Q 021160          270 TLAY--------------RERRYNAADFESDEEEGETYLLGFSDSDASS  304 (316)
Q Consensus       270 ~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  304 (316)
                      ....              ..++|+..+++.++.+|+||+|+...++-+.
T Consensus       375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence            3321              2599999999999999999999999887543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1e-24  Score=183.91  Aligned_cols=192  Identities=17%  Similarity=0.299  Sum_probs=165.1

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+|..+|.++.|++.. .+|++|+.+|+|++||++..+              ..+++ .+|...+.++.|+|-+.+.+++
T Consensus        67 ~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASG  130 (825)
T ss_pred             eccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccc
Confidence            5799999999999988 899999999999999999876              33444 8899999999999999999885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|..+++||.+..                .+.+.+.+|...  +..+.| +|+|.+++.|++|..+++||...|+.+..
T Consensus       131 Stdtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~e  191 (825)
T KOG0267|consen  131 STDTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKE  191 (825)
T ss_pred             cccccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccc
Confidence             6999999999865                588999998865  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      |..|.+.+..+.|+|..-.+++|+.|+++++||+++.. +.........+.... +.+++..+.++....
T Consensus       192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGKIVLSGEQIS  260 (825)
T ss_pred             cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCceeeecCchhh
Confidence            99999999999999999889999999999999999766 444444445554444 666666666665543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=6.9e-23  Score=164.62  Aligned_cols=248  Identities=16%  Similarity=0.168  Sum_probs=191.4

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCC-CCCCCCce-eccccccc-CCCcccEEEEEEccCCCeE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l  107 (316)
                      ..|..+|.+++++|++ .+.++++.+++|.-|++.+++-... +..+.-.. ...+.... .+|...+.+++.++||++|
T Consensus       139 ~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             ccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            4689999999999999 8999999999999999998874311 11110011 11111111 3788999999999999999


Q ss_pred             EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160          108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      +++ .|..|.||+.++.                ..++.+.+|...  |.+++| -.....+++++.|+.+++|+++....
T Consensus       218 atgg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             EecCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHH
Confidence            996 6999999999998                788999999977  999999 66677899999999999999999999


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       187 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +.++.+|.+.|..+.....++.+..|+.|+++++|++.......+.++...+ .++. -.+...+++|+.+|.|-+|++.
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~si-dcv~-~In~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSI-DCVA-FINDEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCe-eeEE-EecccceeeccCCceEEEeeec
Confidence            9999999999999988877877777779999999999666555555565444 2221 2245689999999999999998


Q ss_pred             ccCcceeE----------------------EeecccccccccCCCCeEEEEeccCC
Q 021160          267 RRQTLAYR----------------------ERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       267 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      +...+-..                      ..-|....+++++.+|-|-+|..+++
T Consensus       357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            76433221                      11223344566777788888888777

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=2.1e-23  Score=165.40  Aligned_cols=222  Identities=9%  Similarity=0.059  Sum_probs=173.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +-.|++|+....++...-..         .|-.++|+++.|.+++ ..+++++.|+.+++|++...+             
T Consensus       196 Dr~Ik~W~v~~~k~~~~~tL---------aGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r-------------  252 (459)
T KOG0288|consen  196 DRIIKLWNVLGEKSELISTL---------AGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLR-------------  252 (459)
T ss_pred             hhhhhhhhcccchhhhhhhh---------hccCCCcceeeecCCC-ceEEeecCCCceeeeeccchh-------------
Confidence            34578888876663222222         1346789999999999 899999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ...++ .+|.+.|+++.|......++++ .|.+|++||+...                .+.+++.....   +.++.. 
T Consensus       253 -~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~----------------~C~kt~l~~S~---cnDI~~-  310 (459)
T KOG0288|consen  253 -LRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA----------------YCSKTVLPGSQ---CNDIVC-  310 (459)
T ss_pred             -hhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhh----------------heecccccccc---ccceEe-
Confidence             33333 7899999999998877667775 6999999999876                44444433222   566665 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC-CCCCC---cc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDN---AE  236 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~---~~  236 (316)
                      +  ...+++|..|++|++||.+++.+....+.+. .|+++..++++..+++++.|.++.+.|+++..+. .+...   ..
T Consensus       311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a  387 (459)
T KOG0288|consen  311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA  387 (459)
T ss_pred             c--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence            3  6678899999999999999999999998775 9999999999999999999999999999998733 22211   11


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .-.....++|++.++++|+.||.+++|++.+++..
T Consensus       388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE  422 (459)
T ss_pred             cccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence            11456668999999999999999999999887443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=163.25  Aligned_cols=207  Identities=12%  Similarity=0.112  Sum_probs=168.6

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      +++|.+++-+|.| .+++.|+..|.+++|.+.+|.+              +..+ .+|-.+|+|+.|+.||.+|+++ .|
T Consensus        81 Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~L--------------L~v~-~aHYQ~ITcL~fs~dgs~iiTgskD  144 (476)
T KOG0646|consen   81 PGPVHALASSNLG-YFLLAGTISGNLYLWELSSGIL--------------LNVL-SAHYQSITCLKFSDDGSHIITGSKD  144 (476)
T ss_pred             ccceeeeecCCCc-eEEEeecccCcEEEEEeccccH--------------HHHH-HhhccceeEEEEeCCCcEEEecCCC
Confidence            6789999999999 8888888999999999999973              3333 8899999999999999988885 79


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC--CCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      |.|.+|.+..-..+....       ..++...|..|.-.  |+++.. .+  ...++++++.|.++++||+..|.++..+
T Consensus       145 g~V~vW~l~~lv~a~~~~-------~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  145 GAVLVWLLTDLVSADNDH-------SVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             ccEEEEEEEeecccccCC-------CccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            999999986542221111       23677889999966  998876 43  3568999999999999999999998877


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----------------CCCCCCCcc--cceeeeecCCCCcee
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE--KIMKANKQGREDHSR  251 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~  251 (316)
                      . ....+.+++.+|.+..+..|+.+|.|.+.++....                 +..+.+|..  .+..++ .+.|+.++
T Consensus       215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-is~DgtlL  292 (476)
T KOG0646|consen  215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-ISTDGTLL  292 (476)
T ss_pred             e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-EecCccEE
Confidence            5 45689999999999999999999999888764321                 334557776  554444 88999999


Q ss_pred             EEecCCCeEEEEEeccc
Q 021160          252 ITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       252 ~s~~~d~~~~~w~~~~~  268 (316)
                      ++|+.||.+.+||+..+
T Consensus       293 lSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  293 LSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             EeeCCCCCEEEEecchH
Confidence            99999999999998765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.9e-23  Score=169.77  Aligned_cols=224  Identities=10%  Similarity=0.101  Sum_probs=181.0

Q ss_pred             eeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      |.|+|||+..... .++-.+....       ...-|.++...|++ +.|++|++-.++.|||+.....            
T Consensus       440 gcVKVWdis~pg~k~PvsqLdcl~-------rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTp------------  499 (705)
T KOG0639|consen  440 GCVKVWDISQPGNKSPVSQLDCLN-------RDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP------------  499 (705)
T ss_pred             CeEEEeeccCCCCCCccccccccC-------cccceeeeEecCCC-ceEEeccccceeeeeeccCCCc------------
Confidence            7899999976432 1222222221       13468899999999 8999999999999999986541            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .++.......-.+.+++.+||.++.++ +.||.|.|||+.+.                ..++.|.+|++.  +.|+.. 
T Consensus       500 -rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi-  559 (705)
T KOG0639|consen  500 -RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-  559 (705)
T ss_pred             -chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----------------eeeecccCCCCC--ceeEEe-
Confidence             111111333456788999999996666 58999999999988                688999999988  999998 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      +++|..|.+|+-|.+|+-||+++++.+.... ..+.|.++-.+|++.+++.|-+.+.+.|-.........+..|..-|++
T Consensus       560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS  638 (705)
T KOG0639|consen  560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS  638 (705)
T ss_pred             cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE
Confidence            9999999999999999999999988665443 457899999999999999999999999988888777777778777777


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +. +..-+.++++.+.|..+..|+..-+
T Consensus       639 lK-Fa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  639 LK-FAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             EE-ecccCceeeecCchhhhhhccCccc
Confidence            66 7888999999999999999986554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.5e-23  Score=157.32  Aligned_cols=231  Identities=13%  Similarity=0.181  Sum_probs=172.8

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeC------cCCcccCCCC--
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI------RKCHWYSPIS--   74 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~------~~~~~~~~~~--   74 (316)
                      -+-+||.+.+.+|...+.           ||.+.|+++.|++.+ .++++++.|++..||..      ..........  
T Consensus       170 hTA~iWs~Esg~CL~~Y~-----------GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE  237 (481)
T KOG0300|consen  170 HTARIWSLESGACLATYT-----------GHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE  237 (481)
T ss_pred             cceeEEeeccccceeeec-----------ccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence            356788888887754443           589999999999998 89999999999999983      2211000000  


Q ss_pred             ------------------CCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccc
Q 021160           75 ------------------SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPED  135 (316)
Q Consensus        75 ------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~  135 (316)
                                        .+.+.-.. +..-+.+|...|.+..|...|+.++++ .|.+..+||++++            
T Consensus       238 eE~e~sDe~~~d~d~~~~sD~~tiRv-Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg------------  304 (481)
T KOG0300|consen  238 EEEEHSDEHNRDTDSSEKSDGHTIRV-PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG------------  304 (481)
T ss_pred             hhhhcccccccccccccccCCceeee-eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC------------
Confidence                              00000111 112236799999999999999888885 6999999999999            


Q ss_pred             cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021160          136 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGI  214 (316)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~  214 (316)
                          .++..+.||..+  .+.++- +|..+++++.+.|.+.++||++.. ..+..|.+|+..|+++.|.-+. .+++|+.
T Consensus       305 ----e~v~~LtGHd~E--LtHcst-HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD  376 (481)
T KOG0300|consen  305 ----EVVNILTGHDSE--LTHCST-HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD  376 (481)
T ss_pred             ----ceeccccCcchh--cccccc-CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence                799999999977  888887 899999999999999999999843 4567889999999999998765 4789999


Q ss_pred             CCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          215 EKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       215 d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      |.+|++||++...  +.++.. ..++..++ .+.....++.--.+..++++|+...
T Consensus       377 DrTvKvWdLrNMRsplATIRt-dS~~NRva-vs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIRT-DSPANRVA-VSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             CceEEEeeeccccCcceeeec-CCccceeE-eecCCceEEeccCCceEEEEecCCC
Confidence            9999999999876  555542 22232222 4444445555556688999998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.8e-22  Score=160.40  Aligned_cols=229  Identities=12%  Similarity=0.154  Sum_probs=174.7

Q ss_pred             ceeeEEEEeeCCCcceEEEe-------ccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYC-------SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~   74 (316)
                      +|+|.-|++.+.+-...+.-       +..+......+|...+.+++.++++ +|||+|+.|..|.||+.++.+      
T Consensus       163 ~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~e------  235 (479)
T KOG0299|consen  163 DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLE------  235 (479)
T ss_pred             CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccc------
Confidence            47788899877664311111       1111111114799999999999999 999999999999999999886      


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                         +++.      ..+|.+.|.+++|-.... +++++.|..|++|+++..                ..+.++.+|...  
T Consensus       236 ---hv~~------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----------------s~vetlyGHqd~--  288 (479)
T KOG0299|consen  236 ---HVKV------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----------------SYVETLYGHQDG--  288 (479)
T ss_pred             ---hhhc------ccccccceeeeeeecCccceeeeecCCceEEEehhHh----------------HHHHHHhCCccc--
Confidence               2222      289999999999987665 445578999999999887                678889999977  


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  232 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~  232 (316)
                      |.++.. ..-++.+.+|+.|+++++|++. .+....+.+|.+.+.|++|-.+ ..|++||.+|.|.+|++..++ +.+..
T Consensus       289 v~~Ida-L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  289 VLGIDA-LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             eeeech-hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence            999987 5667777778899999999995 3434567788889999999754 578999999999999998766 22111


Q ss_pred             -CC-----------cccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          233 -DN-----------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       233 -~~-----------~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                       .|           ..++..++ ..+...++++++.+|.+++|.+..+
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla-~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLA-VIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccccccCCccccccccceeeeE-ecccCceEEecCCCCceEEEEecCC
Confidence             11           11344444 5567889999999999999999887

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.5e-22  Score=170.17  Aligned_cols=210  Identities=17%  Similarity=0.255  Sum_probs=164.8

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      |++.+.+|.+.+..+...+           +||+..|.+++...++ . +++|+.|.++++|......            
T Consensus        79 ~D~~i~v~~~~~~~P~~~L-----------kgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------------  133 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTL-----------KGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------------  133 (745)
T ss_pred             ccceEEEEecCCCCchhhh-----------hccccceeeeecCCcC-c-eEecccccceEEecchhhh------------
Confidence            4566677776655543333           4689999999998877 4 9999999999999876332            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                          .. ..+|...|++++.-|++.++.++.|++|++|.-.                  +.+++|.+|.+.  |..+++ 
T Consensus       134 ----~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~------------------~~l~tf~gHtD~--VRgL~v-  187 (745)
T KOG0301|consen  134 ----YS-LQGHTASVWAVASLPENTYVTGSADKTIKLWKGG------------------TLLKTFSGHTDC--VRGLAV-  187 (745)
T ss_pred             ----cc-cCCcchheeeeeecCCCcEEeccCcceeeeccCC------------------chhhhhccchhh--eeeeEE-
Confidence                12 3899999999999999977666789999999863                  578999999976  999998 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      -+ ...+++++.||.|++|++ +|+++.++.+|+.-|.++...+++..++++++|++++||+...-. ..+++  ...+.
T Consensus       188 l~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lP--ttsiW  263 (745)
T KOG0301|consen  188 LD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLP--TTSIW  263 (745)
T ss_pred             ec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecC--ccceE
Confidence            44 445789999999999999 699999999999999999988888899999999999999987221 23333  22332


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ....+  .+.-++++++||.+++|....
T Consensus       264 sa~~L--~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  264 SAKVL--LNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEe--eCCCEEEeccCceEEEEEecc
Confidence            22222  234688999999999998763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.2e-22  Score=150.38  Aligned_cols=230  Identities=14%  Similarity=0.147  Sum_probs=163.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCC-cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  111 (316)
                      ...|.+++|+|....++++|+.|++||+|++... .              ........|.+++.+++|+.+|..+++ +.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------~~~ka~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCc--------------ccchhhhccCCCeEEEEEccCCceEEeecc
Confidence            5789999999965477889999999999999863 3              122333678999999999999986666 57


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      |+++++||+.++                 .+..+..|..+  |..+.|..+- -..|++||.|++|++||.+...++.++
T Consensus        93 Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen   93 DKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             CCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence            999999999987                 56778888876  9999984322 348999999999999999876654422


Q ss_pred             ec-------------------------------------C----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC--C
Q 021160          191 VG-------------------------------------D----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--D  227 (316)
Q Consensus       191 ~~-------------------------------------~----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~--~  227 (316)
                      ..                                     +    +-.+.+++..++....|.|+.+|.+-|..+...  +
T Consensus       154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~  233 (347)
T KOG0647|consen  154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK  233 (347)
T ss_pred             eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence            11                                     1    124678888888877888888998888877653  1


Q ss_pred             -CCCCCCCc------ccceeee--ecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEe
Q 021160          228 -FPPLPDNA------EKIMKAN--KQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       228 -~~~~~~~~------~~~~~~~--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                       -.+++-|.      ..|+..+  .+.+.-..+++.+.||++.+||-..+.++.-.+.-+..-..-.-..+|.+|++.
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence             22222121      1244332  355666789999999999999987766554433333333333345666676664

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.4e-22  Score=152.12  Aligned_cols=220  Identities=13%  Similarity=0.123  Sum_probs=157.3

Q ss_pred             ceeeEEEEeeCC-CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~-~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|+||+|++... ...+..    ..      .|.++|.+++|+.+| ..+++|+.|+.+++||+.+++..          
T Consensus        49 D~tVR~wevq~~g~~~~ka----~~------~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~----------  107 (347)
T KOG0647|consen   49 DGTVRIWEVQNSGQLVPKA----QQ------SHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVS----------  107 (347)
T ss_pred             CCceEEEEEecCCcccchh----hh------ccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCee----------
Confidence            689999999874 332211    11      278999999999999 89999999999999999998632          


Q ss_pred             ecccccccCCCcccEEEEEEccCCC--eEEEe-cCCcEEEEEcCCCCCCCCccCC-----------------------cc
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGLGPSPLSLS-----------------------PE  134 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~-----------------------~~  134 (316)
                           .+ ..|.++|.++.|-+...  .|++| -|++|+.||.+....-....++                       .+
T Consensus       108 -----~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  108 -----QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY  181 (347)
T ss_pred             -----ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence                 22 67999999999988765  78886 5999999999865311111111                       11


Q ss_pred             ccccCCCcceeeCCcCC--ceeeeEEEecCCCcEEEEeccCCeEEEEeccCC--eeEEEeecCcc---------ceEEEE
Q 021160          135 DLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH---------VVNQLE  201 (316)
Q Consensus       135 ~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~---------~v~~~~  201 (316)
                      .+...  ...++.+..+  --+.|++. -++.+..+.|+-+|.+.+..+..+  +.-.+|+.|..         .|++++
T Consensus       182 nL~n~--~te~k~~~SpLk~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  182 NLENP--PTEFKRIESPLKWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EcCCC--cchhhhhcCcccceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            11110  1111111111  11678887 567777799999999999998876  44456666652         578899


Q ss_pred             EcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeE
Q 021160          202 PHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRI  252 (316)
Q Consensus       202 ~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  252 (316)
                      |+|.-..|+|++.||++.+||-.... +.+...+..++.... +..+|.+++
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~-fn~~G~ifa  309 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS-FNRNGSIFA  309 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE-ecCCCCEEE
Confidence            99988899999999999999987765 777777888775554 666666554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.89  E-value=3.2e-22  Score=153.61  Aligned_cols=223  Identities=16%  Similarity=0.220  Sum_probs=174.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +++|++||......++-+.....         ..+|.+++|+|.| .++++|...-.+++||+++.++.           
T Consensus       193 D~tvKlFDfsK~saKrA~K~~qd---------~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcf-----------  251 (430)
T KOG0640|consen  193 DNTVKLFDFSKTSAKRAFKVFQD---------TEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCF-----------  251 (430)
T ss_pred             CCeEEEEecccHHHHHHHHHhhc---------cceeeeEeecCCC-ceEEEecCCCceeEEeccceeEe-----------
Confidence            57899999876554443332211         3489999999999 89999999999999999998853           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ........|.+.|+++.+++.+++.+++ .||.|++||--..                +++.++....++..|.+..| 
T Consensus       252 -vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----------------rCv~t~~~AH~gsevcSa~F-  313 (430)
T KOG0640|consen  252 -VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----------------RCVRTIGNAHGGSEVCSAVF-  313 (430)
T ss_pred             -eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH----------------HHHHHHHhhcCCceeeeEEE-
Confidence             2222336789999999999999988885 6999999997776                67777765545466999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-----ccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCCCCCC--C
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-----RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPL--P  232 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~  232 (316)
                      ..+++++++.+.|..+++|.+.+++++..+.+-     ..--+...|+....+++.-. ..+.++-||.++.....+  .
T Consensus       314 tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl  393 (430)
T KOG0640|consen  314 TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL  393 (430)
T ss_pred             ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence            999999999999999999999999999888653     11234466887777765543 457899999998873222  2


Q ss_pred             CCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          233 DNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +|...+..+. .+|....+++++.|...|+|-
T Consensus       394 gHn~a~R~i~-HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  394 GHNGAVRWIV-HSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCCCCceEEE-eCCCCCceeeecccceeeeee
Confidence            5777765555 788888999999999999995

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=163.83  Aligned_cols=233  Identities=14%  Similarity=0.172  Sum_probs=187.5

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  111 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  111 (316)
                      .|..+.+.++|.|+| ..|++++.||.|++|+......             .+..+ ..+...|.+++.... .+++++.
T Consensus        11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~-~f~~~s~   74 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN-HFLTGSE   74 (933)
T ss_pred             hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc-ceEEeec
Confidence            488899999999999 7999999999999999876520             22222 336677777765433 4555568


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      +++|.+|....+                ..-..+...+-+  +.+++| +.+|.+++.|++|-.|++.++.+......+.
T Consensus        75 ~~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr  135 (933)
T KOG1274|consen   75 QNTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR  135 (933)
T ss_pred             cceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheeec
Confidence            999999999887                333344444444  899999 8999999999999999999999999999999


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC------Cc-ccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD------NA-EKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~------~~-~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      +|.++|.++.|+|++++||+.+.||.|++|++..+. ..++.+      .. ..++....|+|++..++..+.|+.|+++
T Consensus       136 gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy  215 (933)
T KOG1274|consen  136 GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY  215 (933)
T ss_pred             ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence            999999999999999999999999999999999876 333332      11 4566667799998888888999999999


Q ss_pred             EecccC------------cceeEEeecccccccccCCCCeEEEEeccC
Q 021160          264 RLQRRQ------------TLAYRERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       264 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      +.....            ...+..++|.+.+++.+.-+|.|.+|+...
T Consensus       216 ~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  216 SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            866431            123348999999999999999999999975

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.1e-22  Score=158.79  Aligned_cols=203  Identities=14%  Similarity=0.193  Sum_probs=155.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.+++|.+.++....++..           |-..|+++.|+-++ .+|++|+.||.|.+|.+-.---...-....    
T Consensus       102 ~g~lYlWelssG~LL~v~~a-----------HYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~----  165 (476)
T KOG0646|consen  102 SGNLYLWELSSGILLNVLSA-----------HYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVK----  165 (476)
T ss_pred             cCcEEEEEeccccHHHHHHh-----------hccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCcc----
Confidence            57899999999987655533           67789999999999 899999999999999985321000000122    


Q ss_pred             cccccccCCCcccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                        +......|.-+|+.+...+.|.  .+++ +.|.++++||+..+                ..+..+.-.   ..+.+++
T Consensus       166 --p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------~LLlti~fp---~si~av~  224 (476)
T KOG0646|consen  166 --PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------VLLLTITFP---SSIKAVA  224 (476)
T ss_pred             --ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----------------eeeEEEecC---CcceeEE
Confidence              3333388999999999987653  6666 67999999999888                565555533   2389999


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCC----------------eeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEE
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGG----------------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKL  220 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~----------------~~~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~i  220 (316)
                      . +|.+..+++|+.+|.|.+.++...                ..+..+.+|++  .|+|++++-|+..|++|+.||+|+|
T Consensus       225 l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  225 L-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV  303 (476)
T ss_pred             E-cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence            8 999999999999999998886432                23556778887  9999999999999999999999999


Q ss_pred             ecCCCCC-CCCCCCCcccceeee
Q 021160          221 WAPMPTD-FPPLPDNAEKIMKAN  242 (316)
Q Consensus       221 wd~~~~~-~~~~~~~~~~~~~~~  242 (316)
                      ||+.+.+ ++++.....++..+.
T Consensus       304 Wdi~S~Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  304 WDIYSKQCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             EecchHHHHHHHhhhccccceeE
Confidence            9999877 555543344444443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6e-21  Score=160.30  Aligned_cols=229  Identities=12%  Similarity=0.167  Sum_probs=170.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      +.+|.++||+.+. +.||.+-.+|.|.+|++...-             ++...+..+....|.+++|++.++++.++.+|
T Consensus        25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w-------------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg   90 (691)
T KOG2048|consen   25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNW-------------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG   90 (691)
T ss_pred             ccceEEEEEeccC-CceeeeccCCcEEEEccCCCc-------------eeeEEEecCCCCceeeEEEccCCeEEeecCCc
Confidence            6789999999988 889999999999999998653             24445545557789999999777777778999


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--Eee
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMV  191 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~  191 (316)
                      .|.-||+.+.                ++...+......  |++++. +|.+..++.|++||.+++++...++...  .+.
T Consensus        91 ~i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~  151 (691)
T KOG2048|consen   91 SITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLM  151 (691)
T ss_pred             eEEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence            9999999887                666666665544  999999 8999999999999988888888777653  344


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CC--C--CCCCcc----cceeeeecCCCCceeEEecCCCeEEE
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP--P--LPDNAE----KIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~--~--~~~~~~----~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                      ..+++|.+++|+|++..+++|+.||.|++||...+. ++  +  +..-..    -+..+...  ....++++.+.|.|++
T Consensus       152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~F  229 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTF  229 (691)
T ss_pred             cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEE
Confidence            456899999999999999999999999999998876 22  1  111111    12222211  4568999999999999


Q ss_pred             EEecccCcceeE-EeecccccccccCCCCeEEEEec
Q 021160          263 LRLQRRQTLAYR-ERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       263 w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      ||...+.+..-. .+..+...++..+++.+++..+.
T Consensus       230 Wd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  230 WDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             EcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence            998876443222 33334444444444444444433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=3.7e-20  Score=158.98  Aligned_cols=283  Identities=12%  Similarity=0.136  Sum_probs=185.4

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC--C---
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS--S---   75 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~--~---   75 (316)
                      +.|.|.+++++..+....|...           .++|++++|..+|+..+++|+..|.+.+||++..++.....  +   
T Consensus       222 ~~G~ViifNlK~dkil~sFk~d-----------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s  290 (910)
T KOG1539|consen  222 ENGTVIIFNLKFDKILMSFKQD-----------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS  290 (910)
T ss_pred             cCceEEEEEcccCcEEEEEEcc-----------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC
Confidence            4799999999988875555431           37899999999998889999999999999999887443221  0   


Q ss_pred             --------CCCce----------ecccc---------cccCCCcccEEEEEEc-cCCCeEEE-ecCCcEEEEEcCCCC--
Q 021160           76 --------DTPVD----------TFCPR---------HLIGKNNIHITGLAYS-NTSELLIS-YNDELVYLFEKNMGL--  124 (316)
Q Consensus        76 --------~~~~~----------~~~~~---------~~~~~~~~~i~~~~~~-~~~~~l~s-~~d~~i~iwd~~~~~--  124 (316)
                              .+|+-          .+...         ....+|..+..+++|. .+|.++.+ +.|++++.+++....  
T Consensus       291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~  370 (910)
T KOG1539|consen  291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS  370 (910)
T ss_pred             cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence                    00100          00000         0112344444444444 23333333 234444444432111  


Q ss_pred             ---CC---------------------CCccCCc-----------------------cccccCCCcceeeCCc----CCce
Q 021160          125 ---GP---------------------SPLSLSP-----------------------EDLQKREEPQVYSGHR----NSQT  153 (316)
Q Consensus       125 ---~~---------------------~~~~~~~-----------------------~~~~~~~~~~~~~~~~----~~~~  153 (316)
                         +.                     ....+..                       |+......-+....+.    ....
T Consensus       371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~  450 (910)
T KOG1539|consen  371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN  450 (910)
T ss_pred             HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcc
Confidence               00                     0000000                       0011111100011111    1123


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---  227 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---  227 (316)
                      +++++. ++.|++.+.|...|.|-+|++++|-....+   +.|.++|+.++....++.+++++.+|.+++||...+.   
T Consensus       451 ~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  451 ATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             eEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            788888 899999999999999999999999888888   5899999999999888999999999999999976432   


Q ss_pred             ---------------------------------------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          228 ---------------------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       228 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                                                             .+.+.+|.+.+.... +++|++++++.+.|++|++||+.++
T Consensus       530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccCc
Confidence                                                   223447888886666 9999999999999999999999987


Q ss_pred             Ccce---------eEEeeccccccccc-CCCCeEEEEe
Q 021160          269 QTLA---------YRERRYNAADFESD-EEEGETYLLG  296 (316)
Q Consensus       269 ~~~~---------~~~~~~~~~~~~~~-~~~~~v~~~~  296 (316)
                      ...-         ...++|.+..++.. .+..-||.|-
T Consensus       609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            4432         23688888888854 4444577763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=6e-22  Score=153.05  Aligned_cols=236  Identities=15%  Similarity=0.159  Sum_probs=168.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|+|.|+.+.++.+-+..           |...|+.+.|+|..++++++++.|..|++|++++..++           
T Consensus       114 ~GvIrVid~~~~~~~~~~~g-----------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-----------  171 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYRG-----------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-----------  171 (385)
T ss_pred             eeEEEEEecchhhhccceec-----------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-----------
Confidence            58899999988877666654           78899999999999999999999999999999998754           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCc----cc----cccCC-Ccc---eeeCC
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSP----ED----LQKRE-EPQ---VYSGH  148 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~----~~----~~~~~-~~~---~~~~~  148 (316)
                       +...-..+|.+.|.++.|+++|.++++ |.|.++++|++....-........    ..    +++.+ ...   +-.-|
T Consensus       172 -~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  172 -AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             -EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence             333444789999999999999999998 579999999998543111111110    00    11100 011   22345


Q ss_pred             cCCceeeeEEEecCCCcEEEEeccCCeEEEEec-cCCee-------------EEEeecCccceEEE--EEcCCCCeEEEE
Q 021160          149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGKL-------------VRLMVGDRHVVNQL--EPHPHIPMFATC  212 (316)
Q Consensus       149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~-~~~~~-------------~~~~~~~~~~v~~~--~~~p~~~~l~s~  212 (316)
                      .+.  |-|+.|+   |+++++-+.++.|..|.. +-++.             +..+.-....|+-+  +|.|-+++||.|
T Consensus       251 rny--VDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  251 RNY--VDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             cch--HHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            544  8888884   789999999999999987 22221             22333334455555  556778889999


Q ss_pred             eCCCcEEEecCCCCCCCCCCC--C--cccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          213 GIEKTVKLWAPMPTDFPPLPD--N--AEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       213 ~~d~~i~iwd~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ...|+|.+||++.........  |  ....+.-..++.++..++....|++|.-||.
T Consensus       326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            999999999998776322222  1  1223344447889999999999999998874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.9e-21  Score=149.54  Aligned_cols=198  Identities=12%  Similarity=0.199  Sum_probs=147.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCC-CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +-+|+|||++.......+..           |.+.|+++.|.+.- .+.|++|+.||.|.+|+.....            
T Consensus        62 DetI~IYDm~k~~qlg~ll~-----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~------------  118 (362)
T KOG0294|consen   62 DETIHIYDMRKRKQLGILLS-----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE------------  118 (362)
T ss_pred             CCcEEEEeccchhhhcceec-----------cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE------------
Confidence            34789999988776666554           78899999998854 1389999999999999998765            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccc-----cccCC--------Ccce--
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPED-----LQKRE--------EPQV--  144 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~--------~~~~--  144 (316)
                        +...+ .+|...|+.++.+|.+++..+ +.|+.+++||+-.+....-..+....     .+.+.        .+..  
T Consensus       119 --~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q  195 (362)
T KOG0294|consen  119 --LLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQ  195 (362)
T ss_pred             --Eeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEe
Confidence              44444 889999999999999997777 78999999999877532221111110     01100        0000  


Q ss_pred             ------eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEE--cCCCCeEEEEeCCC
Q 021160          145 ------YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP--HPHIPMFATCGIEK  216 (316)
Q Consensus       145 ------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~s~~~d~  216 (316)
                            +..-..+..+.++.|  -++..+++|.+++.|.+||..+..+...+.+|..+|.++.+  .|.+.+|+|+|.||
T Consensus       196 ~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  196 LDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             cccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence                  111111223566665  46889999999999999999999999999999999999985  45677899999999


Q ss_pred             cEEEecCCCCC
Q 021160          217 TVKLWAPMPTD  227 (316)
Q Consensus       217 ~i~iwd~~~~~  227 (316)
                      .|+|||++...
T Consensus       274 ~I~vWd~~~~~  284 (362)
T KOG0294|consen  274 FIKVWDIDMET  284 (362)
T ss_pred             eEEEEEccccc
Confidence            99999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=9.6e-21  Score=145.24  Aligned_cols=223  Identities=19%  Similarity=0.181  Sum_probs=157.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.++++|.........+.            |..++.+++|.+.  ..+++|+.||.|+.+|+.++..            
T Consensus        34 DgslrlYdv~~~~l~~~~~------------~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~------------   87 (323)
T KOG1036|consen   34 DGSLRLYDVPANSLKLKFK------------HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE------------   87 (323)
T ss_pred             cCcEEEEeccchhhhhhee------------cCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc------------
Confidence            6889999988775433333            6789999999984  5899999999999999998752            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCC-----------------------CCCccCCccccc
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG-----------------------PSPLSLSPEDLQ  137 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~  137 (316)
                         .. +..|..+|.|+.+++....+++ +.|++|++||.+....                       .....+..+++.
T Consensus        88 ---~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   88 ---DQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             ---ee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence               12 2789999999999986655555 6799999999985321                       111112223333


Q ss_pred             cCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC----eeEEEeecCcc---------ceEEEEEcC
Q 021160          138 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----KLVRLMVGDRH---------VVNQLEPHP  204 (316)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~----~~~~~~~~~~~---------~v~~~~~~p  204 (316)
                      +...........-+-.+.++++ -|++.=.++++-+|.|.+=.+...    +....|+.|..         +|++++|||
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~-~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVAL-VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             cccchhhhccccceeEEEEEEE-ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            3322211111111112788988 567777888999999987776654    33445666642         799999999


Q ss_pred             CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160          205 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       205 ~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      -...||||+.||.|.+||+...+ +..+......|..++ ++.++..++.++.
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls-fs~dG~~LAia~s  294 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS-FSMDGSLLAIASS  294 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE-eccCCCeEEEEec
Confidence            98889999999999999999887 777776656665555 6677777666543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=4.6e-21  Score=150.70  Aligned_cols=215  Identities=20%  Similarity=0.220  Sum_probs=163.3

Q ss_pred             CCCccceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCc-ccCCC------CCCCCceecccccccCCCcccEEEEEEcc
Q 021160           31 PMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCH-WYSPI------SSDTPVDTFCPRHLIGKNNIHITGLAYSN  102 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (316)
                      .+|.+.++.+.-.+.+. .+.++=+..|.|+||++...- .....      ...+|+.++      .+|...=..+.|||
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~------~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF------NGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe------cccCccceeeeccc
Confidence            46888999888888752 344555788999999986321 11111      122333333      78888889999999


Q ss_pred             CCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEE
Q 021160          103 TSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIW  179 (316)
Q Consensus       103 ~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~w  179 (316)
                      --. .|++| .-+.|++|...++.         |.+    -...|.+|...  |..++| +| ....|++|+.||+|+||
T Consensus       222 ~~~g~LlsGDc~~~I~lw~~~~g~---------W~v----d~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIW  285 (440)
T KOG0302|consen  222 IKTGRLLSGDCVKGIHLWEPSTGS---------WKV----DQRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIW  285 (440)
T ss_pred             ccccccccCccccceEeeeeccCc---------eee----cCccccccccc--hhhhcc-CCccCceEEeeecCceEEEE
Confidence            433 45665 47889999987762         111    12346678865  999999 55 46688999999999999


Q ss_pred             eccCC---eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeE
Q 021160          180 KKKGG---KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRI  252 (316)
Q Consensus       180 d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  252 (316)
                      |++.+   .++. .+.|.+.|+-+.|+.+..+||+|+.||+++|||++.-+    +.++..|..+|.++.|.+.+...++
T Consensus       286 DiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia  364 (440)
T KOG0302|consen  286 DIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA  364 (440)
T ss_pred             EecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence            99987   3333 37899999999999998999999999999999998765    4477889999988886666888999


Q ss_pred             EecCCCeEEEEEeccc
Q 021160          253 TLTPDVIMHVLRLQRR  268 (316)
Q Consensus       253 s~~~d~~~~~w~~~~~  268 (316)
                      +++.|..+.+||+.-.
T Consensus       365 asg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  365 ASGEDNQITIWDLSVE  380 (440)
T ss_pred             eccCCCcEEEEEeecc
Confidence            9999999999998643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.6e-20  Score=148.58  Aligned_cols=210  Identities=15%  Similarity=0.169  Sum_probs=161.7

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  109 (316)
                      .||+++|..++|+|.+.+.||+|+.|.+|.||.+..+.+....  .+|+..+      .+|...|--++|+|... +|++
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l--tepvv~L------~gH~rrVg~V~wHPtA~NVLls  149 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL--TEPVVEL------YGHQRRVGLVQWHPTAPNVLLS  149 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc--ccceEEE------eecceeEEEEeecccchhhHhh
Confidence            6999999999999988799999999999999999877643321  2333333      89999999999999874 6666


Q ss_pred             -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                       +.|.+|.+||+.++                ..+-.+. |.+.  |.+++| +.+|.++++.+.|..|++||.++++.+.
T Consensus       150 ag~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             ccCCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEee
Confidence             68999999999998                5555555 8766  999999 9999999999999999999999999999


Q ss_pred             EeecCcc-ceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCc-eeEEecCCCe
Q 021160          189 LMVGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDH-SRITLTPDVI  259 (316)
Q Consensus       189 ~~~~~~~-~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~  259 (316)
                      .-.+|.+ ....+.|-.++.++.||-   .+..+-+||...-.    +.++.. ...++-- .+.++.. ..+.|-.|+.
T Consensus       210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~P-FyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLP-FYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEe-eecCCCCEEEEEecCCcc
Confidence            8888875 345567888888554442   46789999987654    333332 2333222 2455444 4577888999


Q ss_pred             EEEEEecccCc
Q 021160          260 MHVLRLQRRQT  270 (316)
Q Consensus       260 ~~~w~~~~~~~  270 (316)
                      ||.+.+.....
T Consensus       288 IRYyEit~d~P  298 (472)
T KOG0303|consen  288 IRYFEITNEPP  298 (472)
T ss_pred             eEEEEecCCCc
Confidence            99999887643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=3e-20  Score=141.86  Aligned_cols=260  Identities=17%  Similarity=0.247  Sum_probs=171.6

Q ss_pred             ceeeEEEEeeCCCc--ceEEEecccc--ccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDSA--TRLFYCSSFS--ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~--~~~~~~~~~~--~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      +|.+-|||+.....  ..-+.++..-  .....-+|+..|.++-|-|.+.-.|.+++.|.++++||..+.+..       
T Consensus        65 dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a-------  137 (397)
T KOG4283|consen   65 DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA-------  137 (397)
T ss_pred             CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee-------
Confidence            68899999986541  1111111111  111124799999999999977679999999999999999987621       


Q ss_pred             CceecccccccCCCcccEEEEEEccCC---CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTS---ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                        ..|       ...+.|.+-+++|-.   .+++++ .|-+|++.|+..+                ...+.+.||...  
T Consensus       138 --~~F-------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----------------s~sH~LsGHr~~--  190 (397)
T KOG4283|consen  138 --VDF-------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----------------SFSHTLSGHRDG--  190 (397)
T ss_pred             --EEe-------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----------------cceeeeccccCc--
Confidence              111       124567777788754   266666 6889999999999                788999999987  


Q ss_pred             eeeEEEecCCCcE-EEEeccCCeEEEEeccCC-eeEEE--------------eecCccceEEEEEcCCCCeEEEEeCCCc
Q 021160          154 VKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGG-KLVRL--------------MVGDRHVVNQLEPHPHIPMFATCGIEKT  217 (316)
Q Consensus       154 i~~~~~~~~~~~~-l~~~~~dg~v~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~~p~~~~l~s~~~d~~  217 (316)
                      |.++.| +|...+ |++|+.||.|++||++.. .+...              -..|.+.|+.++|+.++.++++++.|..
T Consensus       191 vlaV~W-sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  191 VLAVEW-SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             eEEEEe-ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            999999 776654 688999999999998753 22222              2357789999999999999999999999


Q ss_pred             EEEecCCCCC--CCCCCC--Ccccc-eeeeecCCC-----------CceeEEecCCCeEEEEEecccCcceeEEeecccc
Q 021160          218 VKLWAPMPTD--FPPLPD--NAEKI-MKANKQGRE-----------DHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAA  281 (316)
Q Consensus       218 i~iwd~~~~~--~~~~~~--~~~~~-~~~~~~~~~-----------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~  281 (316)
                      +++|+...+.  +..+..  |.... ........+           +-.+++......|++|+.. .+......+.++-.
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~i~c~~~~~~fq  348 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKRINCAAYRPDFE  348 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc-cceeeEEeecCchh
Confidence            9999987764  222110  11000 000001122           2234444455556666544 22222224555555


Q ss_pred             cccccCCCCeEEEEec
Q 021160          282 DFESDEEEGETYLLGF  297 (316)
Q Consensus       282 ~~~~~~~~~~v~~~~~  297 (316)
                      ..-+++-++.++.|-.
T Consensus       349 ~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  349 QCFTGDMNGNIYMWSP  364 (397)
T ss_pred             hhhccccCCccccccc
Confidence            6666666666666643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-20  Score=162.39  Aligned_cols=219  Identities=17%  Similarity=0.207  Sum_probs=173.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++|+.......+.....          |...|.+++...   ++|++|+.+++|.+|.+..++             
T Consensus        34 dg~ir~~~~~sd~e~P~ti~~----------~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~-------------   87 (933)
T KOG1274|consen   34 DGDIRKWKTNSDEEEPETIDI----------SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGE-------------   87 (933)
T ss_pred             CCceEEeecCCcccCCchhhc----------cCceeEEEeecc---cceEEeeccceEEEeeCCCCC-------------
Confidence            578999988766322222221          345677776653   589999999999999999875             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        ...++...+-++.+++|+.+|++++.+ .|-.|++.++...                ...+.+.+|..+  |.++.| 
T Consensus        88 --~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~-  146 (933)
T KOG1274|consen   88 --EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY-  146 (933)
T ss_pred             --ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----------------chheeecccCCc--eeeeeE-
Confidence              222224446789999999999988885 6888999999887                677889999977  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecC--------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL  231 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~  231 (316)
                      +|.+.+||+.+.||.|++|+++++.+..++.+-        ...+..++|+|++..|+..+.|+.|++|+..+.. ...+
T Consensus       147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L  226 (933)
T KOG1274|consen  147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL  226 (933)
T ss_pred             cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence            999999999999999999999998877666431        3456779999998888888899999999998876 3334


Q ss_pred             CC-CcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          232 PD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       232 ~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      .. +....+....|+|.|.++++++-+|.|-+||.++
T Consensus       227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            32 3333367777999999999999999999999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=8.2e-20  Score=134.61  Aligned_cols=202  Identities=16%  Similarity=0.230  Sum_probs=159.6

Q ss_pred             CCCccceEEEEECC---CCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           31 PMNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        31 ~gh~~~v~~~~~~~---~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      ..|.+.|..++|-.   .+..+|++++ .|..|.+-|..+++               ..+...+|.+.|.++ ++=+|-+
T Consensus       133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------~~~a~sghtghilal-yswn~~m  196 (350)
T KOG0641|consen  133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------GFHALSGHTGHILAL-YSWNGAM  196 (350)
T ss_pred             eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---------------cceeecCCcccEEEE-EEecCcE
Confidence            35889999999953   2335677664 57777777877775               223338999999887 4556778


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--c---CCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--R---NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  180 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd  180 (316)
                      ++++ .|.+|++||++-.                ..+..+...  .   ....|.+++. .|.|++|++|-.|....+||
T Consensus       197 ~~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             EEccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEE
Confidence            8886 6999999999876                333333211  1   1134889998 99999999999999999999


Q ss_pred             ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC-----CCCCcccceeeeecCCCCceeEEec
Q 021160          181 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      ++.++.++.+..|...|.++.|+|...++++++.|.+|++-|++.....+     ...|.+.++++- |.+..-.+++.+
T Consensus       260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r-wh~~d~sfisss  338 (350)
T KOG0641|consen  260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR-WHPQDFSFISSS  338 (350)
T ss_pred             eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE-ecCccceeeecc
Confidence            99999999999999999999999999999999999999999998765333     336777777777 677777888999


Q ss_pred             CCCeEEEEEec
Q 021160          256 PDVIMHVLRLQ  266 (316)
Q Consensus       256 ~d~~~~~w~~~  266 (316)
                      .|.++.+|.+.
T Consensus       339 adkt~tlwa~~  349 (350)
T KOG0641|consen  339 ADKTATLWALN  349 (350)
T ss_pred             CcceEEEeccC
Confidence            99999999753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=1.1e-20  Score=153.92  Aligned_cols=255  Identities=14%  Similarity=0.132  Sum_probs=186.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      .|..-|.+++++... +.+.+|+. |.|+|||+....-      ..|+..+..    ..-...|.+....|+|+-|+. +
T Consensus       417 ~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------k~PvsqLdc----l~rdnyiRSckL~pdgrtLivGG  484 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------KSPVSQLDC----LNRDNYIRSCKLLPDGRTLIVGG  484 (705)
T ss_pred             ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------CCccccccc----cCcccceeeeEecCCCceEEecc
Confidence            477888999999877 89999887 8999999975421      223322211    112457889999999985554 6


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .-.++.|||+....                +.-...-.........++. +||.+..++++.||.|.|||+.....++.|
T Consensus       485 eastlsiWDLAapT----------------prikaeltssapaCyALa~-spDakvcFsccsdGnI~vwDLhnq~~Vrqf  547 (705)
T KOG0639|consen  485 EASTLSIWDLAAPT----------------PRIKAELTSSAPACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQTLVRQF  547 (705)
T ss_pred             ccceeeeeeccCCC----------------cchhhhcCCcchhhhhhhc-CCccceeeeeccCCcEEEEEcccceeeecc
Confidence            78889999998762                1111111111122566777 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ++|+..+.|+.++++|..|-||+-|.+||-||++.+.......+...|+++- ..+.+.+++.+-.++.+.+......++
T Consensus       548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg-~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG-YCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc-cCCCccceeeecccCcEEEEecCCccc
Confidence            9999999999999999999999999999999999887444444666777776 678888999999999888776654322


Q ss_pred             c--------eeE-EeecccccccccCCCCeEEEEeccCCC--CCCCCCCcceeeecC
Q 021160          271 L--------AYR-ERRYNAADFESDEEEGETYLLGFSDSD--ASSEGGGNQRECIIS  316 (316)
Q Consensus       271 ~--------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~  316 (316)
                      -        +.. .|.+.+.+..+...|..+.+|...-|-  -.+-|.+..-+|-||
T Consensus       627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS  683 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS  683 (705)
T ss_pred             eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence            1        222 678888888887777767666544332  234445666667664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=3.2e-19  Score=147.25  Aligned_cols=250  Identities=12%  Similarity=0.092  Sum_probs=170.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+..            ...+.+++|+|++..++++++.++.|++||..+++..           
T Consensus        10 d~~v~~~d~~t~~~~~~~~~------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----------   66 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPV------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-----------   66 (300)
T ss_pred             CCEEEEEECCCCceEEEEEC------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----------
Confidence            68999999988765544432            1235689999998434467788999999999887621           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         ..+ ..+. .+..++|+|+++.++ ++ .++.+++||+.+.                ..+..+... ..  +.+++|
T Consensus        67 ---~~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~  122 (300)
T TIGR03866        67 ---GTL-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR----------------KVLAEIPVG-VE--PEGMAV  122 (300)
T ss_pred             ---Eec-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC----------------eEEeEeeCC-CC--cceEEE
Confidence               111 1222 245788999998554 44 5899999999876                444444422 22  678898


Q ss_pred             ecCCCcEEEEeccCC-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCC-CCCCCCCc-
Q 021160          160 FGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTD-FPPLPDNA-  235 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~-~~~~~~~~-  235 (316)
                       +|++.++++++.++ .+.+||..+++....+.. ...+..++|+|+++.++ ++..++.|++||+++++ ...+..+. 
T Consensus       123 -~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~  200 (300)
T TIGR03866       123 -SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP  200 (300)
T ss_pred             -CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence             99999999988765 567889988887665543 23457899999999875 44568999999998876 23222111 


Q ss_pred             ----cc--ceeeeecCCCCce-eEEecCCCeEEEEEecccCccee---------EEeeccccccccc-CCCCeEEEEecc
Q 021160          236 ----EK--IMKANKQGREDHS-RITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESD-EEEGETYLLGFS  298 (316)
Q Consensus       236 ----~~--~~~~~~~~~~~~~-~~s~~~d~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~v~~~~~~  298 (316)
                          ..  ...+. ++++++. +++...++.+.+||+.+.+....         ..+.|++..+... ..++.|.+||..
T Consensus       201 ~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       201 GVHPEAVQPVGIK-LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             ccccccCCccceE-ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence                11  11222 5677766 45556677899999876543322         1466777777654 567889999998


Q ss_pred             CCC
Q 021160          299 DSD  301 (316)
Q Consensus       299 ~~~  301 (316)
                      ++.
T Consensus       280 ~~~  282 (300)
T TIGR03866       280 ALK  282 (300)
T ss_pred             CCc
Confidence            765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=2.4e-20  Score=150.09  Aligned_cols=205  Identities=14%  Similarity=0.192  Sum_probs=156.8

Q ss_pred             CccceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEE
Q 021160           33 NSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS  109 (316)
Q Consensus        33 h~~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s  109 (316)
                      |.++|++++|+|... +++|+|..-|+|-+||+.+.+-     ..      .-..+...|..+|.++.|+|...  ++.+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----d~------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----DK------DGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----cc------CceEEeccCCccccceEecCCChhheeee
Confidence            678999999999886 6889999999999999973320     01      11223377899999999999874  6666


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR  188 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~  188 (316)
                      +.||+|++-|+++.                ..-..+........+.++.| +.+...++.+..=|.+.+||++++.. ..
T Consensus       254 SyDGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             ccCceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccch
Confidence            78999999999876                22222333233334778888 77777788888888999999998665 66


Q ss_pred             EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-C----CCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160          189 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-F----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                      .+..|...|.+++++|-.++ |||+|.|++.+|||++... .    .....|...| ..+.++|.+..+++.+.|..|++
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEE
Confidence            67778889999999998877 9999999999999998643 1    2233466655 55558886666999999999999


Q ss_pred             EEec
Q 021160          263 LRLQ  266 (316)
Q Consensus       263 w~~~  266 (316)
                      ||..
T Consensus       396 ~dss  399 (498)
T KOG4328|consen  396 FDSS  399 (498)
T ss_pred             eecc
Confidence            9983

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=8.5e-21  Score=152.09  Aligned_cols=235  Identities=13%  Similarity=0.092  Sum_probs=172.5

Q ss_pred             cEEEEEecCCcEEEEeCcCCccc-CCCCCCC---Cc--eecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEE
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWY-SPISSDT---PV--DTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFE  119 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~-~~~~~~~---~~--~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd  119 (316)
                      +++|.|+.|..|.|||+.-.... +.+....   ..  ..........+|+..|..++|+..-+ +|+++ .|.+|++||
T Consensus       193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD  272 (463)
T KOG0270|consen  193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD  272 (463)
T ss_pred             ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence            79999999999999999743211 0000000   00  00001112247999999999998775 88885 699999999


Q ss_pred             cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEE
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ  199 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~  199 (316)
                      +.++                ++...+..|...  |.++.|++..+.+|++|+.|++|.+.|.+........-...+.|-.
T Consensus       273 ~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  273 VDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             cCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence            9999                788888878765  9999998888999999999999999999853322222224578999


Q ss_pred             EEEcCCCCe-EEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCccee---
Q 021160          200 LEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---  273 (316)
Q Consensus       200 ~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~---  273 (316)
                      ++|.|.... ++++..||+|+-+|++...  +.++..|..+|..+........++++++.|+.+++|++...+....   
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~  414 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH  414 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence            999998766 7788899999999999763  7788889999977776666788999999999999999875433111   


Q ss_pred             -------EEe---ecccccccccCCCCeEEEEeccCC
Q 021160          274 -------RER---RYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       274 -------~~~---~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                             .++   ......++.+...+++.+||...+
T Consensus       415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             cccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence                   111   123355566666667888887654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8.3e-22  Score=174.45  Aligned_cols=229  Identities=14%  Similarity=0.187  Sum_probs=177.8

Q ss_pred             ceeeEEEEeeCC---CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            2 VLFNMLFDLRSD---SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         2 ~g~v~vwd~~~~---~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      +|.|-+||...-   ....++        .+..-|.+.|..+.|++..++++|+|+.||.|.|||+...+          
T Consensus        89 dG~I~ly~p~~~~~~~~~~~l--------a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~----------  150 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVL--------ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE----------  150 (1049)
T ss_pred             CCceEEecchhhccCcchHHH--------hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC----------
Confidence            688999998652   222222        12234899999999999987899999999999999998755          


Q ss_pred             ceecccccc-cCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           79 VDTFCPRHL-IGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        79 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                          .+.+. ...-.+.|.+++|+..-. +|+++ .+|.+.|||++..                +++-.+..+.....+.
T Consensus       151 ----tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  151 ----TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             ----CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC----------------CcccccccCCCcccee
Confidence                11111 122357899999998764 77775 6889999999987                5666666555544478


Q ss_pred             eEEEecCC-CcEEEEeccCC---eEEEEeccC-CeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC-C
Q 021160          156 GVNFFGPN-DEYVMSGSDCG---HLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-F  228 (316)
Q Consensus       156 ~~~~~~~~-~~~l~~~~~dg---~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~-~  228 (316)
                      .++| +|+ ...++++++|.   .|.+||++. ...++.+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++ +
T Consensus       211 ~l~W-hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  211 VLAW-HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             eeee-CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence            8999 555 45666666644   599999875 45677888999999999999977 669999999999999999998 7


Q ss_pred             CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          229 PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ..++...++.....|...+...+...+.||.|.++.+....
T Consensus       290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            78887778888887666677799999999999999987653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.1e-22  Score=161.45  Aligned_cols=246  Identities=50%  Similarity=0.884  Sum_probs=192.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ++.|.-+|++...+...+.+...++..     .-..++++.+|.+++++++|+.|..+++||.+.-...   ....++..
T Consensus       254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~-----~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~  325 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVPAEKFVCREADEKE-----RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDK  325 (559)
T ss_pred             ccceeeeeeccCCccceeeeeccCCcc-----ceeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhh
Confidence            567888999998887777765544211     1367899999999889999999999999998754311   12236788


Q ss_pred             cccccccCCCcccEEEEEEccCC-CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      ||+.++.......|++++|+.++ .+|++.+|-.|+++....+.++.+...++.   .....+.+++|.+..+|..+.|+
T Consensus       326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFf  402 (559)
T KOG1334|consen  326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFF  402 (559)
T ss_pred             cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeec
Confidence            89988877777889999999766 588888999999997766655444433322   11233459999998899999999


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      .|...|+++|++-|.|+||+-.+++.+..+.+....|+||.-||..+.||+++-|..|+||...+.+....+...+.++.
T Consensus       403 GPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~  482 (559)
T KOG1334|consen  403 GPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIK  482 (559)
T ss_pred             cCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHh
Confidence            99999999999999999999999999999988777999999999999999999999999999977766666656666766


Q ss_pred             eeecCC-CCceeEEecCCC
Q 021160          241 ANKQGR-EDHSRITLTPDV  258 (316)
Q Consensus       241 ~~~~~~-~~~~~~s~~~d~  258 (316)
                      .+.+.. +..+-++...|.
T Consensus       483 rN~~~~~ed~~~~t~~~d~  501 (559)
T KOG1334|consen  483 RNKRERDEDSLTVTDPFDQ  501 (559)
T ss_pred             hhccccccccccccCcHHH
Confidence            665553 344455555554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=2.3e-20  Score=158.10  Aligned_cols=222  Identities=14%  Similarity=0.180  Sum_probs=175.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      |.++|+||.+.+..-.+-.           |..+|.|+.|+.-  +.++||+++.|+-|++||+...-            
T Consensus       481 GnlrVy~Lq~l~~~~~~eA-----------HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny------------  537 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEA-----------HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY------------  537 (1080)
T ss_pred             CceEEEEehhhhhhhheec-----------ccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc------------
Confidence            7899999987665433333           7889999999742  32689999999999999997543            


Q ss_pred             ecccccccCCCcccEEEEEEccCC--CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc---CCcee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTV  154 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i  154 (316)
                        .+.....+|...|+++.|...|  ..+++ |.|+.|++=-.+..                .....|..|.   ....+
T Consensus       538 --~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~----------------~~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  538 --DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA----------------SSGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             --chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc----------------cCceeccccccccccceE
Confidence              3444448999999999999887  34555 67877664332211                1112222221   11348


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP  230 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~  230 (316)
                      ++|+. .|..+++++++.|..|+||++++|+....|++   |.+..-.+...|.+.|+|+...|+++.++|..+++ +.+
T Consensus       600 YDm~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  600 YDMAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEeee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            99998 99999999999999999999999999999975   66777889999999999999999999999999888 888


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +.+|.+.+..+. +.+|-+.+++.+.||.|.+|.+..
T Consensus       679 m~GHsE~VTG~k-F~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  679 MTGHSEAVTGVK-FLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hcCcchheeeee-ecccchhheeecCCceEEEEECch
Confidence            999999886665 888999999999999999999854

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.4e-19  Score=138.94  Aligned_cols=237  Identities=14%  Similarity=0.160  Sum_probs=162.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +++|+|||.+.....-..+. ..+      .|.+.|..+.|. |.=++.+|+++.|+++.||.-...+.      ..+-.
T Consensus        34 Dq~vkI~d~~~~s~~W~~Ts-~Wr------ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~  100 (361)
T KOG2445|consen   34 DQTVKIWDSTSDSGTWSCTS-SWR------AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGR  100 (361)
T ss_pred             CCcEEEEeccCCCCceEEee-eEE------ecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccc
Confidence            67899999865543322222 122      388999999995 44338999999999999998642221      11111


Q ss_pred             ecccccccCCCcccEEEEEEccCC--CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-------CCcC
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------GHRN  150 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  150 (316)
                      .......+......|+.+.|.|..  -.|++ +.||.++||+....     ..++.+.     ....+.       .+. 
T Consensus       101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp-----~nLs~W~-----Lq~Ei~~~~~pp~~~~-  169 (361)
T KOG2445|consen  101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP-----MNLSQWT-----LQHEIQNVIDPPGKNK-  169 (361)
T ss_pred             eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc-----cccccch-----hhhhhhhccCCccccc-
Confidence            122233335667889999999975  46676 57999999998654     2222222     222222       122 


Q ss_pred             CceeeeEEEecCC---CcEEEEeccC-----CeEEEEeccCC----eeEEEeecCccceEEEEEcCCC----CeEEEEeC
Q 021160          151 SQTVKGVNFFGPN---DEYVMSGSDC-----GHLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPHI----PMFATCGI  214 (316)
Q Consensus       151 ~~~i~~~~~~~~~---~~~l~~~~~d-----g~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~p~~----~~l~s~~~  214 (316)
                       ....|+.| +|.   .++|+.|+.+     +.++||....+    ..+..+.+|+.+|++++|.|+.    .+||+++.
T Consensus       170 -~~~~CvsW-n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  170 -QPCFCVSW-NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             -CcceEEee-ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence             23678888 553   5678888876     47888886543    3456778999999999999964    35999999


Q ss_pred             CCcEEEecCCCCC---------------------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          215 EKTVKLWAPMPTD---------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       215 d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      || |+||.+....                     +..+.+|...+..+. |...+..+.+.+.||.+|+|...
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~-wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR-WNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE-EeeeeeEEeecCCCceeeehhhh
Confidence            99 9999987311                     233556777776666 66778899999999999999754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=1e-19  Score=152.11  Aligned_cols=245  Identities=13%  Similarity=0.133  Sum_probs=165.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC--------
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS--------   74 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~--------   74 (316)
                      -++++||+.+.+....-.         +.||.+.|.+++|.|.++..|++|+.||.+.|||++........+        
T Consensus       122 sT~r~Wdvk~s~l~G~~~---------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRL---------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             ceeeeeeeccceeeccee---------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence            478999999887654421         236999999999999999999999999999999998554211100        


Q ss_pred             C---CCCceecc--cccccCCCcccEEE---EEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcc-
Q 021160           75 S---DTPVDTFC--PRHLIGKNNIHITG---LAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-  143 (316)
Q Consensus        75 ~---~~~~~~~~--~~~~~~~~~~~i~~---~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  143 (316)
                      +   +.|.+...  ...- ..+...|.+   +.+..|...||+ + .|+.|++||++....+.-.          .+.. 
T Consensus       193 ~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~----------ep~~~  261 (720)
T KOG0321|consen  193 HNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ----------EPRGS  261 (720)
T ss_pred             ccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc----------CCCcc
Confidence            0   01111110  0111 234444544   555667777777 4 4999999999876321111          1111 


Q ss_pred             -eeeCCcC-CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe--eEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCc
Q 021160          144 -VYSGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKT  217 (316)
Q Consensus       144 -~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~  217 (316)
                       .+..|.. ...+.++.. ...|.+|++.+.|+.|++|++.+-.  ++..+.++..  .-..-..+|++.++++|+.|..
T Consensus       262 ~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  262 DKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             cCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence             1222210 112666666 6668888888889999999987532  3333433321  1122346899999999999999


Q ss_pred             EEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          218 VKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       218 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++|.+....  ...+.+|...+....|.+.+-.-+++++.|..+++|++..+
T Consensus       341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  341 AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999998776  66778999999888876667777888899999999999654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=5e-20  Score=140.23  Aligned_cols=206  Identities=14%  Similarity=0.208  Sum_probs=158.6

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc--CCCeEEEe
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY  110 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~  110 (316)
                      +-+.|.|+.|.|++ ..+++-. |..|.+|++.....+        +..+.. .....|....++-+|+|  +++.+++.
T Consensus       122 avg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~--------vaev~s-s~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  122 AVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKI--------VAEVLS-SESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             HhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcch--------heeecc-cccccccceecccccCCCCccceEEEe
Confidence            45689999999987 6666655 789999999876521        111111 11134667788999999  56799999


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccC-CeeE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG-GKLV  187 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~-~~~~  187 (316)
                      +|+++..||+++.                +.... -..|...  +..+.| .|+ ..+|++|++||.|++||.+. ..++
T Consensus       191 ~d~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv  251 (370)
T KOG1007|consen  191 SDSTLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPV  251 (370)
T ss_pred             CCCcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccc
Confidence            9999999999987                33333 3455544  999999 565 45688999999999999874 5678


Q ss_pred             EEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCC------------------------------CCCCCCCCCcc
Q 021160          188 RLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAE  236 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~  236 (316)
                      ..+.+|...|.++.|+|.- +++++++.|..|.+|....                              +.+.++..|.+
T Consensus       252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED  331 (370)
T KOG1007|consen  252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED  331 (370)
T ss_pred             cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence            8999999999999999954 5588999999999996431                              12345667889


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++.++|.+.++-.+++.+.||.+.+=++.+.
T Consensus       332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  332 SVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            99999988889999999999999888776544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.2e-19  Score=137.49  Aligned_cols=243  Identities=11%  Similarity=0.137  Sum_probs=162.1

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcE
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELV  115 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i  115 (316)
                      ..|+.|++.| .++|+|..||.|.+||+.+..               +..++.+|..+|.+++|+++|+.|++ +.|..|
T Consensus        26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence            6799999999 899999999999999999775               33344899999999999999998877 479999


Q ss_pred             EEEEcCCCCCCCCccCCc--cc---------------cccC-------CCcceeeCCcCCc---e-eeeEEEecCCCcEE
Q 021160          116 YLFEKNMGLGPSPLSLSP--ED---------------LQKR-------EEPQVYSGHRNSQ---T-VKGVNFFGPNDEYV  167 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~--~~---------------~~~~-------~~~~~~~~~~~~~---~-i~~~~~~~~~~~~l  167 (316)
                      .+||+..+.......++.  +.               +...       .+.+.+.......   . ..+..| .+.|++|
T Consensus        90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~g~yI  168 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRRGKYI  168 (405)
T ss_pred             EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCCCCEE
Confidence            999999875111111110  00               0000       0111111111000   0 122234 7889999


Q ss_pred             EEeccCCeEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-------CCCCCCCcc---
Q 021160          168 MSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNAE---  236 (316)
Q Consensus       168 ~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~---  236 (316)
                      ++|...|.+.+++..+-+++..++--. ..|.++.++..++.|+..+.|+.||.|+++.-.       ........+   
T Consensus       169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN  248 (405)
T KOG1273|consen  169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN  248 (405)
T ss_pred             EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence            999999999999999999998887555 789999999999999999999999999986321       110110111   


Q ss_pred             -cceeeeecCCCCceeEEecC-CCeEEEEEecccCcceeE-----------EeecccccccccCCCCeEEEEec
Q 021160          237 -KIMKANKQGREDHSRITLTP-DVIMHVLRLQRRQTLAYR-----------ERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       237 -~~~~~~~~~~~~~~~~s~~~-d~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                       .......++.++.++++++. ...+.+|.-..+......           .+.|-...+++- +.|.||+|..
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence             11233445668888887764 477889986655332221           122333333333 5667777754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.4e-19  Score=136.58  Aligned_cols=211  Identities=16%  Similarity=0.203  Sum_probs=158.4

Q ss_pred             CccceEEEEECCCCCcEEEEEecC-------CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE  105 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~d-------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  105 (316)
                      |.+.|..++-+|..+.+|+++-.+       ..+.||.++........   .++.  +...+...+-+.|.|+.|.|++.
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tlE--~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STLE--CVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chhh--HhhcCCHHHhCceeeEEEcCCCC
Confidence            678999999999997888887442       34789998755321110   0111  22333334556899999999999


Q ss_pred             eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-----CCcCCceeeeEEEecC--CCcEEEEeccCCeEEE
Q 021160          106 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFI  178 (316)
Q Consensus       106 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~~  178 (316)
                      .+++-.|..|.+|++....               +....+.     ++...  .++-+| +|  ++..+++. .|+++..
T Consensus       137 klasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt-~d~tl~~  197 (370)
T KOG1007|consen  137 KLASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATT-SDSTLQF  197 (370)
T ss_pred             eeEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEe-CCCcEEE
Confidence            9999889999999998773               1122221     12322  677777 55  56666655 5899999


Q ss_pred             EeccCCeeEEEee-cCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEe
Q 021160          179 WKKKGGKLVRLMV-GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITL  254 (316)
Q Consensus       179 wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~  254 (316)
                      ||+++.+....+. +|...|..+.|+|+.++ |++|+.||.|+|||.+..+  +.++.+|...+...-..+....+++++
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence            9999887766664 68889999999999877 8999999999999999876  888999999998777555578899999


Q ss_pred             cCCCeEEEEEecc
Q 021160          255 TPDVIMHVLRLQR  267 (316)
Q Consensus       255 ~~d~~~~~w~~~~  267 (316)
                      +.|..+.+|....
T Consensus       278 ~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  278 GSDSAVNLSCASS  290 (370)
T ss_pred             CCCceeEEEeccc
Confidence            9999999997653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=8e-19  Score=134.81  Aligned_cols=154  Identities=15%  Similarity=0.190  Sum_probs=125.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      ...|+++.|+|.+ ..|++++.||.+++|++....+.               .. -.|..++.+.+|.++.+.+.++.||
T Consensus        13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~---------------~~-~~~~~plL~c~F~d~~~~~~G~~dg   75 (323)
T KOG1036|consen   13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLK---------------LK-FKHGAPLLDCAFADESTIVTGGLDG   75 (323)
T ss_pred             hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhh---------------hh-eecCCceeeeeccCCceEEEeccCc
Confidence            5689999999988 78888889999999999876522               11 4578899999999977777778999


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                      +|+.+|+.++                 ....+..|..+  +.++.+ .+....+++|+.|++|++||.+.......+.. 
T Consensus        76 ~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-  134 (323)
T KOG1036|consen   76 QVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-  134 (323)
T ss_pred             eEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEecccccccccccc-
Confidence            9999999987                 44556667755  999999 78888999999999999999997655555543 


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ...|.++...  ++.|+.|+.|..+.+||++...
T Consensus       135 ~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  135 GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence            3478887764  6688898899999999998754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=6.4e-19  Score=151.53  Aligned_cols=273  Identities=15%  Similarity=0.145  Sum_probs=188.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      +.+.||+++.. ..+.+...          -...|++++|+|..+++++.|..+|+|.+||++.+...       +..  
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~~----------~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-------~~s--  281 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVLE----------SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-------PPS--  281 (555)
T ss_pred             ceEEEEecCCC-CCceEEEe----------cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-------CCc--
Confidence            46899999887 33333333          15689999999999999999999999999999987621       111  


Q ss_pred             ccccccCCCcccEEEEEEccCCC---eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSE---LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~---~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      ........|..+++.+.|..+-.   ++.++.||.|+.|+++....+...........   ...... ..  ..+++++|
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---~~~~~~-~~--~~~t~~~F  355 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---KGQQSS-KA--VGATSLKF  355 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc---cccccc-cc--cceeeEee
Confidence            22233367899999999977532   55557899999999876532211111000000   000011 11  22889999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCC--------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-CCC-CC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGG--------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD-FP  229 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-~~~-~~  229 (316)
                      ...+...++.|++.|.|.--+....        +....+..|.++|.++.++|-+..++..+.|.+++||.-. ... +.
T Consensus       356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~  435 (555)
T KOG1587|consen  356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL  435 (555)
T ss_pred             ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch
Confidence            6667888999999999987443321        1233455688999999999987664444449999999976 333 55


Q ss_pred             CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc------------eeEEeecccccccccCCCCeEEEEec
Q 021160          230 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------AYRERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      .+..+...+...+|.......++++..+|.+.+||+......            ....+++.+..++.++..|.++++++
T Consensus       436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            566666767777755557889999999999999999754211            11145556889999999999999999


Q ss_pred             cCCC
Q 021160          298 SDSD  301 (316)
Q Consensus       298 ~~~~  301 (316)
                      ++.-
T Consensus       516 ~~~l  519 (555)
T KOG1587|consen  516 SESL  519 (555)
T ss_pred             Cchh
Confidence            7654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=2.5e-19  Score=144.30  Aligned_cols=253  Identities=13%  Similarity=0.108  Sum_probs=177.6

Q ss_pred             ceeeEEEEeeCCC--cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDS--ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~--~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      .|+|-+||+.+.+  ...++..         .+|..+|.++.|+|.+...+++.+.||+|++-|++....          
T Consensus       209 ~G~VG~Wn~~~~~~d~d~v~~f---------~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~----------  269 (498)
T KOG4328|consen  209 GGQVGLWNFGTQEKDKDGVYLF---------TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS----------  269 (498)
T ss_pred             CCcEEEEecCCCCCccCceEEe---------ccCCccccceEecCCChhheeeeccCceeeeeeecchhh----------
Confidence            4899999997332  2233322         258999999999999989999999999999999987641          


Q ss_pred             eecccccccC--CCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           80 DTFCPRHLIG--KNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        80 ~~~~~~~~~~--~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                           ..+..  .....+..+.|+.+.. .++...=|.+.+||+++..               .....+.-|...  |.+
T Consensus       270 -----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~s  327 (498)
T KOG4328|consen  270 -----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG---------------SEYENLRLHKKK--ITS  327 (498)
T ss_pred             -----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC---------------ccchhhhhhhcc--cce
Confidence                 11111  2345677788888776 4444555699999999873               234555666644  999


Q ss_pred             EEEecCCCcEEEEeccCCeEEEEeccCC--ee--EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC----CCC-
Q 021160          157 VNFFGPNDEYVMSGSDCGHLFIWKKKGG--KL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTD-  227 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~--~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~----~~~-  227 (316)
                      |++++-...+|++++.|++++|||++.-  +.  +.....|...|.++.|||.+-.|+|.+.|..|+|||..    ... 
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence            9995556778999999999999998752  22  23334699999999999998889999999999999984    222 


Q ss_pred             CCCCCCCc----cc--ceeeeecCCCCceeEEecCCCeEEEEEecccCcc------------eeEEeecccc-cccccCC
Q 021160          228 FPPLPDNA----EK--IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------AYRERRYNAA-DFESDEE  288 (316)
Q Consensus       228 ~~~~~~~~----~~--~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~------------~~~~~~~~~~-~~~~~~~  288 (316)
                      ..+++ |.    ..  .+... |.++..+++.+..-..|-+++-..++..            ...++-|... .++++..
T Consensus       408 ~~~I~-Hn~~t~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s  485 (498)
T KOG4328|consen  408 LGTIP-HNNRTGRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS  485 (498)
T ss_pred             cceee-ccCcccccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence            22221 21    11  22333 7788888998888888888886554311            1113444444 6667788


Q ss_pred             CCeEEEEec
Q 021160          289 EGETYLLGF  297 (316)
Q Consensus       289 ~~~v~~~~~  297 (316)
                      .|.+|+|--
T Consensus       486 ~Gki~vft~  494 (498)
T KOG4328|consen  486 SGKIYVFTN  494 (498)
T ss_pred             cceEEEEec
Confidence            888888753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.8e-19  Score=134.87  Aligned_cols=243  Identities=16%  Similarity=0.215  Sum_probs=168.6

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec-ccccccCCCcccEEEEEEccC--CCe
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNT--SEL  106 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~  106 (316)
                      +.+|..-|.++.|++.| +.+|+|+.|++|+|||.+...           .++ +.... ..|.+.|..+.|.+.  |+.
T Consensus         9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~W-rah~~Si~rV~WAhPEfGqv   75 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSW-RAHDGSIWRVVWAHPEFGQV   75 (361)
T ss_pred             ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeE-EecCCcEEEEEecCccccce
Confidence            35689999999999999 999999999999999975443           111 22222 679999999999764  578


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccC
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~  183 (316)
                      ++++ .|+++.||.-.... . ...     -.......++......  |+++.| .|.  |-.+++++.||.++||+...
T Consensus        76 vA~cS~Drtv~iWEE~~~~-~-~~~-----~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   76 VATCSYDRTVSIWEEQEKS-E-EAH-----GRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EEEEecCCceeeeeecccc-c-ccc-----cceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCC
Confidence            8885 69999999864220 0 000     0011223344444444  999999 664  66899999999999999643


Q ss_pred             C------eeEEEee-------cCccceEEEEEcCC---CCeEEEEeCC-----CcEEEecCCCC-----CCCCCCCCccc
Q 021160          184 G------KLVRLMV-------GDRHVVNQLEPHPH---IPMFATCGIE-----KTVKLWAPMPT-----DFPPLPDNAEK  237 (316)
Q Consensus       184 ~------~~~~~~~-------~~~~~v~~~~~~p~---~~~l~s~~~d-----~~i~iwd~~~~-----~~~~~~~~~~~  237 (316)
                      .      .+...+.       .+..+..|+.|+|.   .++||.|+.+     +.++||.....     ++.++.+|..+
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            2      2223332       35567889999984   3568888755     37888876433     26788899999


Q ss_pred             ceeeeecCC---CCceeEEecCCCeEEEEEeccc-----------------------------CcceeE-Eeeccccccc
Q 021160          238 IMKANKQGR---EDHSRITLTPDVIMHVLRLQRR-----------------------------QTLAYR-ERRYNAADFE  284 (316)
Q Consensus       238 ~~~~~~~~~---~~~~~~s~~~d~~~~~w~~~~~-----------------------------~~~~~~-~~~~~~~~~~  284 (316)
                      |..+.|.+.   .-.++++++.|| |++|.++..                             +..++. .+.-.+..+.
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence            988885443   345788899999 999998742                             112333 4455667777


Q ss_pred             ccCCCCeEEEEe
Q 021160          285 SDEEEGETYLLG  296 (316)
Q Consensus       285 ~~~~~~~v~~~~  296 (316)
                      +.++||.|-.|.
T Consensus       305 StGdDG~VRLWk  316 (361)
T KOG2445|consen  305 STGDDGCVRLWK  316 (361)
T ss_pred             ecCCCceeeehh
Confidence            777777776664

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.8e-19  Score=141.97  Aligned_cols=203  Identities=10%  Similarity=0.167  Sum_probs=155.5

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-e
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-Y  110 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~  110 (316)
                      -.++|+++.|||.. .++++++.|+.+++|.+....       ...++..      .-...+|.+..|.|+|. .+++ +
T Consensus       212 s~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~-------N~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~  277 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKV-------NPKLQSI------HLEKFPIQKAEFAPNGHSVIFTSG  277 (514)
T ss_pred             CcCCceEEEecCCC-ceEEEecCCCcEEEEEecCcc-------Chhheee------eeccCccceeeecCCCceEEEecc
Confidence            35789999999988 799999999999999997543       1112211      12256899999999998 6665 5


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      ....++.||+.+..              ...+....++.. +.+..... ++++++|+..+..|.|.+....+++.+..+
T Consensus       278 rrky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~  341 (514)
T KOG2055|consen  278 RRKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSF  341 (514)
T ss_pred             cceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence            68889999998762              112233334442 34677777 899999999999999999999999999888


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +- .+.|..++|+.+++.|+.++.+|.|.+||++... ++.+.....---...+.+.++.++++|+..|.|.+++.+
T Consensus       342 Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  342 KI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             ee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            73 5789999999999998888889999999999886 444443222222333356788899999999999999854

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=1.3e-19  Score=155.68  Aligned_cols=224  Identities=13%  Similarity=0.134  Sum_probs=173.4

Q ss_pred             eeEEEEeeCCCcceEEEe-ccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            4 FNMLFDLRSDSATRLFYC-SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      ..+.|+.+.+..-+.+.- ...+      .-...+++++.++-| ++.+.|.+.|.|-+|++.++-....         |
T Consensus       423 ~~~tW~~~n~~~G~~~L~~~~~~------~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s---------f  486 (910)
T KOG1539|consen  423 SAYTWNFRNKTSGRHVLDPKRFK------KDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS---------F  486 (910)
T ss_pred             eEEEEeccCcccccEEecCcccc------ccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc---------c
Confidence            457888887665322221 1111      123578999999999 9999999999999999998853211         1


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                         .-...|..+|+.++...-++.+++ +.+|-+++||..+.                .+...+.-..   .+.++.+ +
T Consensus       487 ---~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k----------------~l~~~l~l~~---~~~~iv~-h  543 (910)
T KOG1539|consen  487 ---GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK----------------VLKKSLRLGS---SITGIVY-H  543 (910)
T ss_pred             ---ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc----------------ceeeeeccCC---Ccceeee-e
Confidence               011578999999999888887777 58999999999876                3444444222   2777777 7


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceee
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKA  241 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  241 (316)
                      .....++.+.+|-.|+++|..+.+.++.+.+|...|++++|||+|++|++++.|++||+||+.++.+.-......+...+
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl  623 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL  623 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee
Confidence            77888999999999999999999999999999999999999999999999999999999999998844333234444444


Q ss_pred             eecCCCCceeEEecCC-CeEEEEEecc
Q 021160          242 NKQGREDHSRITLTPD-VIMHVLRLQR  267 (316)
Q Consensus       242 ~~~~~~~~~~~s~~~d-~~~~~w~~~~  267 (316)
                       .++|++.++++...| .-|.+|.-+.
T Consensus       624 -s~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  624 -SFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             -EECCCCCEEEEEEecCceEEEEEchh
Confidence             489999999999988 7889996443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=2.9e-19  Score=150.74  Aligned_cols=222  Identities=14%  Similarity=0.177  Sum_probs=165.7

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      +||.+.|..++|+|.| .+|++.+.|.+-|+|-.-..+        .....+   .-...|...++|+++-+....++++
T Consensus       358 SGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q--------~~wHEi---aRPQiHGyDl~c~~~vn~~~~FVSg  425 (764)
T KOG1063|consen  358 SGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQ--------QEWHEI---ARPQIHGYDLTCLSFVNEDLQFVSG  425 (764)
T ss_pred             ccccccceeeeecCCC-CEEEEeccccceeeecccccc--------cceeee---cccccccccceeeehccCCceeeec
Confidence            5899999999999999 899999999999998765222        011111   1124577889999999865566775


Q ss_pred             -cCCcEEEEEcCCCC-----------------CCCCccCCc--------c--c---------------------------
Q 021160          111 -NDELVYLFEKNMGL-----------------GPSPLSLSP--------E--D---------------------------  135 (316)
Q Consensus       111 -~d~~i~iwd~~~~~-----------------~~~~~~~~~--------~--~---------------------------  135 (316)
                       ..+-+++|+.....                 .+....++.        .  .                           
T Consensus       426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence             56778899886322                 000000000        0  0                           


Q ss_pred             ------cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC-----eEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160          136 ------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-----HLFIWKKKGGKLVRLMVGDRHVVNQLEPHP  204 (316)
Q Consensus       136 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p  204 (316)
                            .-..+.++.+.||...  |++++. +|+++++|+++...     .|++|+..+-..++.+.+|.-.|+.++|+|
T Consensus       506 EdqLq~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             HHHHHHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence                  0111334556788876  999998 99999999998643     589999999888889999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          205 HIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       205 ~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ++++|+++|.|+++.+|......     ......|...|..+. |++++.+++|+|.|..+++|.....
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs-W~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS-WSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc-cCcccceeEEecCCceEEEEeccCc
Confidence            99999999999999999985443     223556666665555 8999999999999999999998765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=7.3e-19  Score=147.06  Aligned_cols=280  Identities=9%  Similarity=0.044  Sum_probs=181.0

Q ss_pred             ceeeEEEEeeCCCcc-eEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~-~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|.|.++|.+...-. +...+.      ....|...|..+.|.| +..+|++++.|.++++||++..++..         
T Consensus        73 ~G~i~l~dt~~~~fr~ee~~lk------~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G---------  136 (720)
T KOG0321|consen   73 DGGIILFDTKSIVFRLEERQLK------KPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG---------  136 (720)
T ss_pred             CCceeeecchhhhcchhhhhhc------ccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec---------
Confidence            577888887654321 111111      1234899999999999 55899999999999999999887421         


Q ss_pred             ecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCC-----------CCccCCccccccCCCcceeeC
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGP-----------SPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  147 (316)
                          ..+..+|...+.+++|.|... .|++| .||.|.|||++-....           .....+....+..+.......
T Consensus       137 ----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  137 ----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence                113478999999999999886 66665 7999999999754300           000000000000011112222


Q ss_pred             CcCC--ceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEE--------eecC---ccceEEEEEcCCCCeEEEEe
Q 021160          148 HRNS--QTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRL--------MVGD---RHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       148 ~~~~--~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~--------~~~~---~~~v~~~~~~p~~~~l~s~~  213 (316)
                      +...  ..|+.+.|  .|...|++++. |+.|++||++.......        +..|   .-.+.++.....|.+|...+
T Consensus       213 ~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            2221  12444544  68888998887 99999999986544322        1223   23577888888889977666


Q ss_pred             CCCcEEEecCCCCCCC---CCCCCcc-cceeeeecCCCCceeEEecCCCeEEEEEecccCccee-----------EEeec
Q 021160          214 IEKTVKLWAPMPTDFP---PLPDNAE-KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY-----------RERRY  278 (316)
Q Consensus       214 ~d~~i~iwd~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~-----------~~~~~  278 (316)
                      .|+.|+.|++......   .+.++.. ..+.....++++.++++++.|....+|.+.+.+....           ..+.|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            7999999999876532   2333322 2233444678999999999999999999987543321           12322


Q ss_pred             -ccccccccCCCCeEEEEeccCCCCC
Q 021160          279 -NAADFESDEEEGETYLLGFSDSDAS  303 (316)
Q Consensus       279 -~~~~~~~~~~~~~v~~~~~~~~~~~  303 (316)
                       .-..++...+|-++-+|++.++-++
T Consensus       371 S~~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  371 SATTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             ccCCCceeeccCcceEEEeccCchhh
Confidence             2234444588889999999766443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=8.1e-19  Score=148.81  Aligned_cols=233  Identities=15%  Similarity=0.237  Sum_probs=181.1

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC---CeEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLI  108 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~  108 (316)
                      +-+-.+.+++.+|++ ++||+|..-|.+++|++...+.               .....+|...|.|+.|+..-   ++|+
T Consensus       457 d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLA  520 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLA  520 (1080)
T ss_pred             CcccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhh
Confidence            445679999999999 8999999999999999986652               22338899999999998743   4888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC--cEEEEeccCCeEEEEeccCCe
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--EYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      ++ .|..|++||+....               .+++++.+|...  |+++.| .-+|  ..+++++.|+.+.+--.+...
T Consensus       521 SasrdRlIHV~Dv~rny---------------~l~qtld~HSss--ITsvKF-a~~gln~~MiscGADksimFr~~qk~~  582 (1080)
T KOG1408|consen  521 SASRDRLIHVYDVKRNY---------------DLVQTLDGHSSS--ITSVKF-ACNGLNRKMISCGADKSIMFRVNQKAS  582 (1080)
T ss_pred             hccCCceEEEEeccccc---------------chhhhhcccccc--eeEEEE-eecCCceEEEeccCchhhheehhcccc
Confidence            85 69999999997653               578899999977  999999 5555  678888888887654443222


Q ss_pred             eEEEeecC-----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC---CcccceeeeecCCCCceeEEecC
Q 021160          186 LVRLMVGD-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD---NAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       186 ~~~~~~~~-----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      -...+..|     ...+..|+..|+.+++++++.|+.|+||+++.++ .+.+.+   |....+.+. ..|.+.++++...
T Consensus       583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~-lDPSgiY~atScs  661 (1080)
T KOG1408|consen  583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI-LDPSGIYLATSCS  661 (1080)
T ss_pred             CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE-ECCCccEEEEeec
Confidence            12222222     2578999999999999999999999999999987 555543   444555555 6788899999999


Q ss_pred             CCeEEEEEecccCcc--------eeE--EeecccccccccCCCCeEEEEeccC
Q 021160          257 DVIMHVLRLQRRQTL--------AYR--ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       257 d~~~~~w~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      |.++-++|+-.++-.        ...  .|.++-..+.+...||-+|+|.+..
T Consensus       662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            999999999875322        111  6778888888888999999998865

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=6e-20  Score=152.48  Aligned_cols=229  Identities=16%  Similarity=0.235  Sum_probs=158.7

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec--------cc------------cccc-
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF--------CP------------RHLI-   88 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~--------~~------------~~~~-   88 (316)
                      +.||.+.|.+++.+|.| .+|++|+.||+|+||.+.++.++..+.....|...        |.            .... 
T Consensus       396 yrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG  474 (733)
T ss_pred             EeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence            35899999999999988 99999999999999999999976544322222111        00            0000 


Q ss_pred             -------------------------------------------CCCcccEEEEEEccCCCeEEEe-c---CCcEEEEEcC
Q 021160           89 -------------------------------------------GKNNIHITGLAYSNTSELLISY-N---DELVYLFEKN  121 (316)
Q Consensus        89 -------------------------------------------~~~~~~i~~~~~~~~~~~l~s~-~---d~~i~iwd~~  121 (316)
                                                                 -.|...|..+.|+..|.+|++. .   ...|.|.++.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence                                                       0133456666677777666652 1   3456666665


Q ss_pred             CCCCCCCc-------------------------cCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeE
Q 021160          122 MGLGPSPL-------------------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  176 (316)
Q Consensus       122 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  176 (316)
                      ......+.                         .+.++++.....++.+....  ..|.+++. +|.|..|+.|+.|+.+
T Consensus       555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~--kwiS~msi-hp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS--KWISSMSI-HPNGDNLILGSYDKKM  631 (733)
T ss_pred             cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC--eeeeeeee-cCCCCeEEEecCCCee
Confidence            44321111                         11112222222222222222  34788888 8999999999999999


Q ss_pred             EEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC------CC-C---CCCCCCCccc----ceee
Q 021160          177 FIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM------PT-D---FPPLPDNAEK----IMKA  241 (316)
Q Consensus       177 ~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~------~~-~---~~~~~~~~~~----~~~~  241 (316)
                      ..+|+.- .++.+.+..|...+++++||+.-++|++|+.||++.|+.-.      .. .   +..+++|...    ++..
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~  711 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT  711 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence            9999874 46788888999999999999999999999999999998532      11 1   4567777655    6666


Q ss_pred             eecCCCCceeEEecCCCeEEEE
Q 021160          242 NKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       242 ~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      . |++...++++++.||++++|
T Consensus       712 ~-wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  712 I-WHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             c-ccCCCceEEecCCCceEEee
Confidence            5 78888899999999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.83  E-value=3.9e-18  Score=139.18  Aligned_cols=260  Identities=12%  Similarity=0.101  Sum_probs=192.6

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      |++..|+++.+...+..-+.+..+       +..|.|++|.++|  -+++|.++|.|.||+..+.+              
T Consensus       222 ~H~~Fw~~~~~~l~k~~~~fek~e-------kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------  278 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLVKRQGIFEKRE-------KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------  278 (626)
T ss_pred             ceEEEEEccCCceEEEeecccccc-------ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------
Confidence            688999998876554443333322       4679999999988  69999999999999998776              


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCcc--------------------------cc
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPE--------------------------DL  136 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------~~  136 (316)
                      ..++.. .|.+.|.++....+|.+|..+.|..|..||-.-.. .....++-+                          .+
T Consensus       279 ~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k-~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~  356 (626)
T KOG2106|consen  279 ISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRK-LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL  356 (626)
T ss_pred             EEeEee-ecCCceEEEEEecCccEeecCccceEEeccccccc-cccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence            444553 89999999999999998886689999999943221 011100000                          01


Q ss_pred             ccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC
Q 021160          137 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK  216 (316)
Q Consensus       137 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~  216 (316)
                      .. .......+|..+  .+.++. .|+...+++++.|+.+++|+  ..+++.... -..++.++.|+|.| .+|.|...|
T Consensus       357 ~~-~f~~~v~gh~de--lwgla~-hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G  428 (626)
T KOG2106|consen  357 EN-GFTLTVQGHGDE--LWGLAT-HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATG  428 (626)
T ss_pred             cC-CceEEEEecccc--eeeEEc-CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccc
Confidence            11 122233566655  888998 89999999999999999999  455544433 34678999999999 999999999


Q ss_pred             cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC------------cceeEEeeccccccc
Q 021160          217 TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------TLAYRERRYNAADFE  284 (316)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~------------~~~~~~~~~~~~~~~  284 (316)
                      ...+.|.++..+.++... .+.++...+++++.+++.++.|+.|.++.+....            .....+++++...+.
T Consensus       429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV  507 (626)
T ss_pred             eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence            999999999776666545 4455777799999999999999999999987542            223337888888888


Q ss_pred             ccCCCCeEEEEe
Q 021160          285 SDEEEGETYLLG  296 (316)
Q Consensus       285 ~~~~~~~v~~~~  296 (316)
                      +...+-.++.|.
T Consensus       508 ~~S~d~eiLyW~  519 (626)
T KOG2106|consen  508 SNSGDYEILYWK  519 (626)
T ss_pred             eccCceEEEEEc
Confidence            777766677773

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=7.3e-20  Score=162.30  Aligned_cols=243  Identities=15%  Similarity=0.165  Sum_probs=176.6

Q ss_pred             ccceEEEEECCCCCc---EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160           34 SIRLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  109 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~---~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  109 (316)
                      ....+.++|.+.+..   +||.|..||.|.+||...-.-      ...   .........|.+.|..+.|++... +|++
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~~---~~~la~~~~h~G~V~gLDfN~~q~nlLAS  134 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NAS---EEVLATKSKHTGPVLGLDFNPFQGNLLAS  134 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhcc------Ccc---hHHHhhhcccCCceeeeeccccCCceeec
Confidence            346789999987744   588899999999999875200      000   011112267999999999999875 8888


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                      | +||.|.|||+.+.                +....+........|.+++|+-.....|++++.+|.+.|||++..+.+-
T Consensus       135 Ga~~geI~iWDlnn~----------------~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  135 GADDGEILIWDLNKP----------------ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             cCCCCcEEEeccCCc----------------CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            6 7999999999876                2223332222223499999955566788999999999999999888777


Q ss_pred             EeecCcc--ceEEEEEcCCCCe-EEEEeCCC---cEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeE
Q 021160          189 LMVGDRH--VVNQLEPHPHIPM-FATCGIEK---TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIM  260 (316)
Q Consensus       189 ~~~~~~~--~v~~~~~~p~~~~-l~s~~~d~---~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  260 (316)
                      .+..+..  .+..++|||+... +++++.|.   .|.+||++...  ++.+.+|...++.+.|...|.+++++++.|+.+
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence            7765543  4778999998755 77776554   69999998654  778889999999999777788999999999999


Q ss_pred             EEEEecccCccee--------E--Eeeccc-ccccccCCCCeEEEEeccCCC
Q 021160          261 HVLRLQRRQTLAY--------R--ERRYNA-ADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       261 ~~w~~~~~~~~~~--------~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ..|+.++++.+.-        +  .|.|.. ..++...-+|+|-++.+...+
T Consensus       279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999998644321        1  233322 244445556667777665544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=4.1e-18  Score=140.64  Aligned_cols=221  Identities=8%  Similarity=0.052  Sum_probs=147.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ++.|++||+.+.+....+..           + ..+..++|+|++..+++++..++.+++||+.+.+..           
T Consensus        52 ~~~v~~~d~~~~~~~~~~~~-----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~-----------  108 (300)
T TIGR03866        52 SDTIQVIDLATGEVIGTLPS-----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL-----------  108 (300)
T ss_pred             CCeEEEEECCCCcEEEeccC-----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE-----------
Confidence            46899999887655433321           1 234678999998334455567899999999876521           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cC-CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         ..+ . +...+.+++|+|++.+++++ .+ ..+.+||..++                +....... ...  ..+++|
T Consensus       109 ---~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----------------~~~~~~~~-~~~--~~~~~~  164 (300)
T TIGR03866       109 ---AEI-P-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----------------EIVDNVLV-DQR--PRFAEF  164 (300)
T ss_pred             ---eEe-e-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----------------eEEEEEEc-CCC--ccEEEE
Confidence               111 1 12235789999999977775 34 45778898765                33332222 222  567888


Q ss_pred             ecCCCcEEEEe-ccCCeEEEEeccCCeeEEEeecCc-----c--ceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCCCCC
Q 021160          160 FGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGDR-----H--VVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       160 ~~~~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~-----~--~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~~~~  230 (316)
                       ++++++++++ ..++.|++||+.+++.+..+..+.     .  ....++|+|++++++ +.+.++.+.+||+++.+...
T Consensus       165 -s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~  243 (300)
T TIGR03866       165 -TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD  243 (300)
T ss_pred             -CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence             8999988654 469999999999998777664321     1  234688999999844 44556789999998776332


Q ss_pred             CCCCcccceeeeecCCCCceeEEe-cCCCeEEEEEecccCcc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITL-TPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~w~~~~~~~~  271 (316)
                      ...+...+..+. +++++.+++++ ..++.|++||+.+++..
T Consensus       244 ~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       244 YLLVGQRVWQLA-FTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             EEEeCCCcceEE-ECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            212233444454 78888887765 56899999999987554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=1.7e-18  Score=134.14  Aligned_cols=242  Identities=14%  Similarity=0.225  Sum_probs=173.9

Q ss_pred             CCccceEEEEECC----CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC---
Q 021160           32 MNSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---  104 (316)
Q Consensus        32 gh~~~v~~~~~~~----~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  104 (316)
                      +|+.+|..++|++    +.+..+++.+. ..+.+|.....-.+         ..+ ....-..|......++|+-+.   
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---------r~l-q~y~D~d~~Esfytcsw~yd~~~~  104 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---------RLL-QSYADEDHDESFYTCSWSYDSNTG  104 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---------eee-eeccCCCCCcceEEEEEEecCCCC
Confidence            4788999999985    45467777765 56888887643211         111 111112466777788887653   


Q ss_pred             C-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc
Q 021160          105 E-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  182 (316)
Q Consensus       105 ~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~  182 (316)
                      . ++|. |.-|.|+|.|+.++                +....+.+|...  |..+.+++...++++++|.|..|++|+++
T Consensus       105 ~p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CeeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            3 6666 57899999999988                788899999977  99999966667899999999999999999


Q ss_pred             CCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC----------------CCCCCCcc--cceee
Q 021160          183 GGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----------------PPLPDNAE--KIMKA  241 (316)
Q Consensus       183 ~~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~----------------~~~~~~~~--~~~~~  241 (316)
                      +..++..+   .+|.+.|.++.|++++.+|++++.|.++++|++...+.                ..++....  +.++.
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            99999887   46999999999999999999999999999999984320                01111000  11100


Q ss_pred             eecCC--------CCceeEEecCCCeEEEEEecc-cCc-----c-----------------e---eEEeecccccccccC
Q 021160          242 NKQGR--------EDHSRITLTPDVIMHVLRLQR-RQT-----L-----------------A---YRERRYNAADFESDE  287 (316)
Q Consensus       242 ~~~~~--------~~~~~~s~~~d~~~~~w~~~~-~~~-----~-----------------~---~~~~~~~~~~~~~~~  287 (316)
                      .....        =++++++-+-++.|..|.... ++.     +                 .   .+.+.+-...++.+.
T Consensus       247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence            00111        157899999999999998721 111     0                 1   114566778889999


Q ss_pred             CCCeEEEEeccCCCC
Q 021160          288 EEGETYLLGFSDSDA  302 (316)
Q Consensus       288 ~~~~v~~~~~~~~~~  302 (316)
                      ..|.||+||++..+.
T Consensus       327 q~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  327 QSGKVYVWDLDNNEP  341 (385)
T ss_pred             CCCcEEEEECCCCCC
Confidence            999999999977654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.4e-19  Score=137.32  Aligned_cols=248  Identities=7%  Similarity=0.078  Sum_probs=172.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|-|||+.+....+++..           |-.+|++++|+++| +.|++++.|-.+.+||+..+.+.+.++.+.|+..
T Consensus        44 nG~vvI~D~~T~~iar~lsa-----------H~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~  111 (405)
T KOG1273|consen   44 NGRVVIYDFDTFRIARMLSA-----------HVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWG  111 (405)
T ss_pred             CCcEEEEEccccchhhhhhc-----------cccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccce
Confidence            58899999998876666654           78899999999999 9999999999999999999998777665555522


Q ss_pred             cccc---------cccC----------------------CCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCc
Q 021160           82 FCPR---------HLIG----------------------KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPL  129 (316)
Q Consensus        82 ~~~~---------~~~~----------------------~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~  129 (316)
                      ....         ....                      .....-.+..|.+.|+++.+| +.|.+.++|..+.      
T Consensus       112 ~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~------  185 (405)
T KOG1273|consen  112 AQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL------  185 (405)
T ss_pred             eeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh------
Confidence            1100         0000                      001112233477788888886 7999999999887      


Q ss_pred             cCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----C---ee--EEEeec--CccceE
Q 021160          130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----G---KL--VRLMVG--DRHVVN  198 (316)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~----~---~~--~~~~~~--~~~~v~  198 (316)
                                +.+..++-... ..|.++.+ +..|++|+.-+.|+.|+.|+++.    |   ++  .+.+..  .+-.-.
T Consensus       186 ----------e~vas~rits~-~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk  253 (405)
T KOG1273|consen  186 ----------ECVASFRITSV-QAIKQIIV-SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK  253 (405)
T ss_pred             ----------eeeeeeeechh-eeeeEEEE-eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence                      66666664441 23889998 99999999999999999999762    1   11  111110  123456


Q ss_pred             EEEEcCCCCeEEEEe-CCCcEEEecCCCCC-CCCCCCCccc-ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEE
Q 021160          199 QLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  275 (316)
Q Consensus       199 ~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~  275 (316)
                      +++|+.+|.+++.++ .-..++||.-..+. ++.+.+.... ....+ |.+-...+++. ..|.+++|......  .+..
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~-whp~rp~i~si-~sg~v~iw~~~~~e--nwsa  329 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVN-WHPVRPIIASI-ASGVVYIWAVVQVE--NWSA  329 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecc-cccceeeeeec-cCCceEEEEeeccc--chhh
Confidence            788999999976665 45679999999888 5555555533 44455 66655566666 78999999865443  2334


Q ss_pred             eecccccc
Q 021160          276 RRYNAADF  283 (316)
Q Consensus       276 ~~~~~~~~  283 (316)
                      +.|+-..+
T Consensus       330 fAPdFqel  337 (405)
T KOG1273|consen  330 FAPDFQEL  337 (405)
T ss_pred             cCchHHHH
Confidence            44444333

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6.7e-18  Score=130.48  Aligned_cols=268  Identities=11%  Similarity=0.062  Sum_probs=174.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ++.|+|||++.......-.+...-+       -+.-+.+.|.|+-...+++.-...++++|.+...+--.   ...+...
T Consensus       107 Dr~Ir~w~~~DF~~~eHr~~R~nve-------~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~---~~~~~v~  176 (420)
T KOG2096|consen  107 DRSIRLWDVRDFENKEHRCIRQNVE-------YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS---GSHHFVH  176 (420)
T ss_pred             CceEEEEecchhhhhhhhHhhcccc-------CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC---CCccccc
Confidence            6889999998654322211111110       12457889999986677777777889999886443100   0011111


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      ..-..+...|...+..+-....+.+++++ .|..|.+|++..                 +.++.+......  -+..+. 
T Consensus       177 ~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-----------------q~L~~idtnq~~--n~~aav-  236 (420)
T KOG2096|consen  177 IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-----------------QLLQSIDTNQSS--NYDAAV-  236 (420)
T ss_pred             ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-----------------ceeeeecccccc--ccceee-
Confidence            11122345577778888777777899885 699999999984                 466666655543  556666 


Q ss_pred             cCCCcEEEEeccCCeEEEEecc---CC-----eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC----C-
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKK---GG-----KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT----D-  227 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~---~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~----~-  227 (316)
                      +|+|+++++++-.-.|++|.+-   .|     +.+..+++|.+.|..++|+|+...+++.|.||+++|||..-.    + 
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            9999999999999999999953   22     345678899999999999999999999999999999997532    1 


Q ss_pred             CCCCC-------CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc-----------eeEEeecccccccccCCC
Q 021160          228 FPPLP-------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL-----------AYRERRYNAADFESDEEE  289 (316)
Q Consensus       228 ~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  289 (316)
                      ...+.       ......+.+. .+|++..+ +.+....++++..++++..           ....+.+++.++++..+.
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~-lsP~g~~l-A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLE-LSPSGDSL-AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEE-eCCCCcEE-EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence            11121       1112223333 55655444 4455677888887775433           122566777777655443


Q ss_pred             CeEEEEeccCCCC
Q 021160          290 GETYLLGFSDSDA  302 (316)
Q Consensus       290 ~~v~~~~~~~~~~  302 (316)
                       .+.++.-.++.+
T Consensus       395 -~vrv~~ntpg~~  406 (420)
T KOG2096|consen  395 -YVRVIRNTPGWH  406 (420)
T ss_pred             -eeeeecCCCchh
Confidence             355666445543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=6.5e-19  Score=143.46  Aligned_cols=255  Identities=14%  Similarity=0.107  Sum_probs=187.9

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .+++||......+..+..++.++         .+.++.|+..+--.+++.+.|..+++|.-....  .+      +   .
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~~p---------g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~------V---p   72 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTAEP---------GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PE------V---P   72 (673)
T ss_pred             ceEEeecccccCccccccCCCCC---------cceeeeccccceEEEeecCCceeEEEecccCCC--Cc------c---c
Confidence            68999998887777776665542         489999998762222334578888888754321  00      0   0


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  162 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  162 (316)
                      ......+  +.-.|++......++++ |..+.|+|||++..                ...+.+++|...  |+++.| ..
T Consensus        73 ~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~  131 (673)
T KOG4378|consen   73 RVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NN  131 (673)
T ss_pred             eeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHH----------------HHhhhccCCcce--eEEEEe-cC
Confidence            0011112  23345555555577777 47999999999876                566778899865  999999 78


Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC--CCCCCCCcccc
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKI  238 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~  238 (316)
                      ...+||+++..|.|.+..+.++.....|... ...|.-+.|+|..+. |.+++.+|.|.+||+....  ......|..+.
T Consensus       132 ~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~  211 (673)
T KOG4378|consen  132 TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC  211 (673)
T ss_pred             CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc
Confidence            8899999999999999999998877777644 345668999998877 7789999999999998876  44445677766


Q ss_pred             eeeeecCC-CCceeEEecCCCeEEEEEecccCcc---e------eEEeecccccccccCCCCeEEEEeccCC
Q 021160          239 MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTL---A------YRERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       239 ~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      ..++ +++ +..++++.+.|..|.++|...+...   .      ...+.+++..+..+...|+++.+|+..-
T Consensus       212 ~gic-fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  212 RGIC-FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             Ccce-ecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            5565 555 6778999999999999998765221   2      2278899999999999999999998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.6e-18  Score=141.90  Aligned_cols=220  Identities=14%  Similarity=0.146  Sum_probs=167.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|.-||+.+.++...+...           .+.|.+++.+|.+ ..++.|+.||.+..++...+++.           
T Consensus        89 sg~i~EwDl~~lk~~~~~d~~-----------gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~-----------  145 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNIDSN-----------GGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKIT-----------  145 (691)
T ss_pred             CceEEEEecccCceeEEecCC-----------CcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEE-----------
Confidence            689999999987765554442           6789999999998 89999999998777777766532           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcc-----eeeCCc-CCcee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHR-NSQTV  154 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~i  154 (316)
                        ........++.+.+++|+|++..+++| .||.|++||...+.                .+.     ...... .+.-|
T Consensus       146 --~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~----------------t~~~~~~~~d~l~k~~~~iV  207 (691)
T KOG2048|consen  146 --YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ----------------TLHIITMQLDRLSKREPTIV  207 (691)
T ss_pred             --EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc----------------eEEEeeecccccccCCceEE
Confidence              222224457899999999999977775 79999999998872                222     111111 12238


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----CC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FP  229 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----~~  229 (316)
                      +++.|.  ....|++|...|+|.+||...+.+++.+..|...|.+++..+++..+++++.|+.|.-|...+..     ..
T Consensus       208 WSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~  285 (691)
T KOG2048|consen  208 WSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS  285 (691)
T ss_pred             EEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec
Confidence            889883  45679999999999999999999999999999999999999999999999999999999877663     22


Q ss_pred             CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          230 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ....|...+...+....   .+++++.|..+-+--..+
T Consensus       286 ~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  286 RRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             cccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence            23335555544443332   889999999888776655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=8.3e-19  Score=135.65  Aligned_cols=209  Identities=13%  Similarity=0.108  Sum_probs=153.5

Q ss_pred             ccceEEEEEC-------CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc---ccEEEEEEccC
Q 021160           34 SIRLNAIVID-------PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN---IHITGLAYSNT  103 (316)
Q Consensus        34 ~~~v~~~~~~-------~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~  103 (316)
                      ...|...+|-       |+. +++|+.+.+.-|++||.-++++....            .. -.|.   ....+++|+||
T Consensus       104 g~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy------------~~-ydh~de~taAhsL~Fs~D  169 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASY------------RA-YDHQDEYTAAHSLQFSPD  169 (406)
T ss_pred             CCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccch------------hh-hhhHHhhhhheeEEecCC
Confidence            3467777774       555 79999999999999999999854221            11 1122   23468999999


Q ss_pred             CCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCccee-eCC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEec
Q 021160          104 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  181 (316)
Q Consensus       104 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~  181 (316)
                      |+.|.++....|++||+.....         +.   ....++ .+. .....+.+++|++.+...++.|+....+-||.-
T Consensus       170 GeqlfaGykrcirvFdt~RpGr---------~c---~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~  237 (406)
T KOG2919|consen  170 GEQLFAGYKRCIRVFDTSRPGR---------DC---PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND  237 (406)
T ss_pred             CCeEeecccceEEEeeccCCCC---------CC---cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence            9999999999999999943210         00   011111 111 111338889994445569999999999999999


Q ss_pred             cCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC--CCCCCCCcccceeeee--cCCCCceeEEecC
Q 021160          182 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRITLTP  256 (316)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~  256 (316)
                      ....++..+.+|.+.|+.++|+++|+.|.+|+ .|-.|-.||++...  +..+..|...--+...  ..+.+++|++++.
T Consensus       238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t  317 (406)
T KOG2919|consen  238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT  317 (406)
T ss_pred             CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence            88999999999999999999999999988887 57789999998765  5556555542222222  3467899999999


Q ss_pred             CCeEEEEEeccc
Q 021160          257 DVIMHVLRLQRR  268 (316)
Q Consensus       257 d~~~~~w~~~~~  268 (316)
                      ||.|++||++..
T Consensus       318 dG~V~vwdlk~~  329 (406)
T KOG2919|consen  318 DGSVRVWDLKDL  329 (406)
T ss_pred             CccEEEEecCCC
Confidence            999999999873

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=9.1e-19  Score=142.62  Aligned_cols=198  Identities=11%  Similarity=0.094  Sum_probs=153.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|+|||++...+.+.+           ++|...|+++.++-.+ .+||+++..|.|.|..+.++.             
T Consensus       100 ~~~Vkiwdl~~kl~hr~l-----------kdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~-------------  154 (673)
T KOG4378|consen  100 SGCVKIWDLRAKLIHRFL-----------KDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQ-------------  154 (673)
T ss_pred             CceeeehhhHHHHHhhhc-----------cCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCc-------------
Confidence            478999999854443332           3588999999999988 899999999999999999876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE--ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       ....+..+....+.-+.|+|..+++.+  +.+|.|.+||+....               +.......|..+  ...++|
T Consensus       155 -~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---------------p~~~~~~~HsAP--~~gicf  216 (673)
T KOG4378|consen  155 -KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------------PIFHASEAHSAP--CRGICF  216 (673)
T ss_pred             -cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---------------cccchhhhccCC--cCccee
Confidence             222332333566779999999885554  469999999998872               233344567765  889999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEK  237 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~  237 (316)
                      .+.+..+|++.+.|..|.+||....+....+. ...+...++|.++|-+|+.|+..|.|..||++..+  +..+..|...
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s  295 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS  295 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence            44456678889999999999999776665554 34578899999999999999999999999999876  6666677777


Q ss_pred             ceeeee
Q 021160          238 IMKANK  243 (316)
Q Consensus       238 ~~~~~~  243 (316)
                      +..++|
T Consensus       296 Vt~vaf  301 (673)
T KOG4378|consen  296 VTRVAF  301 (673)
T ss_pred             eeEEEe
Confidence            766664

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=1.3e-17  Score=136.10  Aligned_cols=233  Identities=13%  Similarity=0.197  Sum_probs=170.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      +..|..+.|+|.+++++++.+. +.+.+|+.+.+.+...           ...+.......|.|++|.++|..+..-++|
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~-----------~~~fek~ekk~Vl~v~F~engdviTgDS~G  267 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR-----------QGIFEKREKKFVLCVTFLENGDVITGDSGG  267 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE-----------eeccccccceEEEEEEEcCCCCEEeecCCc
Confidence            4578899999999888888876 8899999988764321           111112224679999999999987777899


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-------
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-------  186 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-------  186 (316)
                      .|.||+..+.                +..+....|...  |.+++. -.+|.++ +|+.|..|..||-.-.+.       
T Consensus       268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe  327 (626)
T KOG2106|consen  268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLL-SGGKDRKIILWDDNYRKLRETELPE  327 (626)
T ss_pred             eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEe-ecCccceEEeccccccccccccCch
Confidence            9999999776                455555578866  999998 6777654 599999999999321110       


Q ss_pred             ----E-----------------------------EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC
Q 021160          187 ----V-----------------------------RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD  233 (316)
Q Consensus       187 ----~-----------------------------~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  233 (316)
                          +                             ....+|......++.+|+.++++|++.|+.+++|+  ..++.--..
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~  405 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI  405 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE
Confidence                0                             02346777889999999999999999999999999  222110001


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEecccC---------cceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ...+. ..+.+.+.+ .++.++..|...+.|.++..         ++....++|++..++.+..++.+|++..+.+..
T Consensus       406 ~~d~~-~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  406 IEDPA-ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             ecCce-eEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence            12222 344467767 88889999999999887643         223337899999999999999999999887654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.1e-18  Score=138.24  Aligned_cols=220  Identities=14%  Similarity=0.218  Sum_probs=165.8

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .++.||+.+.+..++-.....+        ...+.....+|++ ++|+..+..|.|.+....+++++..+          
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e--------~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~----------  341 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVE--------EKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF----------  341 (514)
T ss_pred             EEEEeeccccccccccCCCCcc--------cchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee----------
Confidence            5788999887765554443222        2356788889999 89999999999999999988754221          


Q ss_pred             cccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160           84 PRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  162 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  162 (316)
                            .-.+.|..++|+.+++ +++++.+|.|.+||++..                .+++.+..... -.-++++. ++
T Consensus       342 ------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----------------~~~~rf~D~G~-v~gts~~~-S~  397 (514)
T KOG2055|consen  342 ------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----------------SCLHRFVDDGS-VHGTSLCI-SL  397 (514)
T ss_pred             ------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----------------ceEEEEeecCc-cceeeeee-cC
Confidence                  1256788999999998 455578999999999987                67777764432 22466776 89


Q ss_pred             CCcEEEEeccCCeEEEEeccC------CeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEecCCCCC-CCCCCC
Q 021160          163 NDEYVMSGSDCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPD  233 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~iwd~~~~~-~~~~~~  233 (316)
                      ++.++|+|++.|.|-|||.++      .+++..+..-...|++|+|+|+.++||.+|  .+..+|+-.+.+.. ...++.
T Consensus       398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~  477 (514)
T KOG2055|consen  398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT  477 (514)
T ss_pred             CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC
Confidence            999999999999999999653      456666666677899999999999977666  56789998887766 344443


Q ss_pred             Ccccc--eeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          234 NAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       234 ~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ....+  ..+..++|.+.+++.+..+|.+.+|.+.
T Consensus       478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            32222  3344489999999999999999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.5e-18  Score=143.25  Aligned_cols=219  Identities=11%  Similarity=0.181  Sum_probs=166.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      .|...|.+++|+|.. ..|++++.||.+++|++.... .+......|+.+|      .+|.++|.|+.+.+.++.+.++ 
T Consensus       292 s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~-~s~~~~~epi~tf------raH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAK-KSAEKDVEPILTF------RAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccC-CccccceeeeEEE------ecccCceEEEEecCCceEEEeec
Confidence            478889999999988 699999999999999994311 1111223344444      8999999999999999988885 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--  188 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--  188 (316)
                      -||+|+.|++.....+...      .........+.||.+.  ++.+++ +.....|++++.||++++|+.....++.  
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds------~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~  434 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDS------YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFG  434 (577)
T ss_pred             cCceeeeeccCCCCCcccc------cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccC
Confidence            6999999988632111111      1111345678899977  999999 8888899999999999999975433300  


Q ss_pred             ------------------------------------------Eeec-------CccceEEEEEcCCCCeEEEEeCCCcEE
Q 021160          189 ------------------------------------------LMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVK  219 (316)
Q Consensus       189 ------------------------------------------~~~~-------~~~~v~~~~~~p~~~~l~s~~~d~~i~  219 (316)
                                                                .+..       ....+..+.++|.+.+.+++..|+.|+
T Consensus       435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir  514 (577)
T KOG0642|consen  435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR  514 (577)
T ss_pred             CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence                                                      0000       013467788999999999999999999


Q ss_pred             EecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          220 LWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       220 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ++|..+++ ++....|...+...+ ..+++.++++++.|+.+++|.+..+
T Consensus       515 ~~dn~~~~~l~s~~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  515 FFDNKTGKILHSMVAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cccccccccchheeeccceeccee-ecCCCceEEeecCCceeehhhccch
Confidence            99999988 777777877776665 7888999999999999999987644

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=9.2e-18  Score=128.12  Aligned_cols=223  Identities=13%  Similarity=0.126  Sum_probs=157.1

Q ss_pred             eeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      -.+|+|.+...+. ......   -...+.+.|..++++..|+.-+++++.+.+-|.+..|||++++..       .    
T Consensus       121 D~LRlWri~~ee~~~~~~~~---L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-------~----  186 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSV---LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-------G----  186 (364)
T ss_pred             CeEEEEeccCcCCceehhhh---hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------c----
Confidence            4689999874322 111111   111123347889999999999999999999999999999998731       1    


Q ss_pred             cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       ..++-+-+|...|..++|...+. ++++ |.||.+++||++...               ...-.+...........++|
T Consensus       187 -~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  187 -TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             -ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc---------------cceEEecCCCCCCcceeecc
Confidence             23333468999999999999775 7777 689999999998762               11122332221234788888


Q ss_pred             ecCCCcEEEEecc-CCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCCC------CC
Q 021160          160 FGPNDEYVMSGSD-CGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF------PP  230 (316)
Q Consensus       160 ~~~~~~~l~~~~~-dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~~------~~  230 (316)
                      ...+.+++|+-.. ...|.+.|++. ..++..+.+|.+.|+.++|.|.... |+|++.|..+-+||+.....      ..
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            6667778877544 55799999885 5678899999999999999998755 99999999999999875432      11


Q ss_pred             CCCCcccceeeeecCCCCceeEEec
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      ......++-++.|.+..+.++..+.
T Consensus       331 ay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  331 AYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             hhhccceeeeeeecccCCCEEEEEe
Confidence            1124455666665445566665544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=1e-17  Score=132.92  Aligned_cols=202  Identities=13%  Similarity=0.095  Sum_probs=149.3

Q ss_pred             cCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160           88 IGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  165 (316)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  165 (316)
                      ..+|+++|..++|+|.+. .+|+| .|.+|.||.+.........         ..++..+.+|...  |.-++|++...+
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l---------tepvv~L~gH~rr--Vg~V~wHPtA~N  145 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL---------TEPVVELYGHQRR--VGLVQWHPTAPN  145 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc---------ccceEEEeeccee--EEEEeecccchh
Confidence            378999999999999764 77776 6999999998765211111         1466788899955  999999766788


Q ss_pred             EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeec
Q 021160          166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ  244 (316)
Q Consensus       166 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~  244 (316)
                      .|++++.|..|.+|++.+|+.+-++. |...|.++.|+.+|.+|+|.+.|++|||||.+.++ +..-..|...--..+.|
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence            99999999999999999999888887 99999999999999999999999999999999998 44445676655455556


Q ss_pred             CCCCceeEEec---CCCeEEEEEecccCcceeE-Eeec-cccccc-ccCCCCeEEEEeccCCC
Q 021160          245 GREDHSRITLT---PDVIMHVLRLQRRQTLAYR-ERRY-NAADFE-SDEEEGETYLLGFSDSD  301 (316)
Q Consensus       245 ~~~~~~~~s~~---~d~~~~~w~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~v~~~~~~~~~  301 (316)
                      -.++.++.++-   ++..+-+|+-..-+.+... +... .+..++ -+++...||+.+-.|+.
T Consensus       225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence            66666554443   3577888886654444332 2211 222222 23555567777776664

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=3.7e-18  Score=140.99  Aligned_cols=213  Identities=17%  Similarity=0.226  Sum_probs=149.0

Q ss_pred             ceeeEEEEeeC---CCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            2 VLFNMLFDLRS---DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         2 ~g~v~vwd~~~---~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      +|++++|+|..   +....+....++      -+|.++|.|++..+.+ ..+++|+.||+|+.|++.... .    ....
T Consensus       315 d~~lk~WnLqk~~~s~~~~~epi~tf------raH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~-d----p~ds  382 (577)
T KOG0642|consen  315 DGTLKLWNLQKAKKSAEKDVEPILTF------RAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQ-D----PDDS  382 (577)
T ss_pred             ccchhhhhhcccCCccccceeeeEEE------ecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCC-C----cccc
Confidence            58899999932   222222222222      2699999999999998 899999999999999887322 0    0001


Q ss_pred             ceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCC---------CCCccCCc---------------
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG---------PSPLSLSP---------------  133 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~---------------  133 (316)
                      .........+.||.+.++.+++++...+|+++ .||++++|+......         ..+.++..               
T Consensus       383 ~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~  462 (577)
T KOG0642|consen  383 YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFG  462 (577)
T ss_pred             cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccc
Confidence            11113334457999999999999988777775 799999999865531         00000000               


Q ss_pred             -cccccC---CCcceeeCCc-----CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160          134 -EDLQKR---EEPQVYSGHR-----NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP  204 (316)
Q Consensus       134 -~~~~~~---~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p  204 (316)
                       ..+.+.   ...+.+....     ....+.-+.+ .|...+.+++.+|+.|+++|..+++++.....|...++++++.|
T Consensus       463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~  541 (577)
T KOG0642|consen  463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP  541 (577)
T ss_pred             cccchhhhhhhheeeccccCCCcccccCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceecceeecC
Confidence             001111   1111111111     0112555665 78889999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEecCCCCC
Q 021160          205 HIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       205 ~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ++.+|++++.|+.+++|.+....
T Consensus       542 ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  542 NGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             CCceEEeecCCceeehhhccchh
Confidence            99999999999999999987654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=4.4e-18  Score=142.71  Aligned_cols=204  Identities=15%  Similarity=0.152  Sum_probs=147.3

Q ss_pred             ECCCCCcEEEE--EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEE
Q 021160           42 IDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYL  117 (316)
Q Consensus        42 ~~~~~~~~l~~--g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~i  117 (316)
                      |+.+. ..+|+  .+.-|.|-||+++....+     +..    ....+.  ....|+.+.|.|-. +.|+. +.||.|++
T Consensus       587 fcan~-~rvAVPL~g~gG~iai~el~~PGrL-----PDg----v~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~l  654 (1012)
T KOG1445|consen  587 FCANN-KRVAVPLAGSGGVIAIYELNEPGRL-----PDG----VMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINL  654 (1012)
T ss_pred             eeecc-ceEEEEecCCCceEEEEEcCCCCCC-----Ccc----cccccc--cCceeeecccCCCChHHeeecccCceEEE
Confidence            34433 44544  356799999999854311     000    111221  24679999999955 45555 68999999


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccce
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  197 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v  197 (316)
                      |.+..+..+..         ...+-..+..|..+  |+++.|++-....|++++.|-+|++||+.+++....+.+|++.|
T Consensus       655 Wr~~a~gl~e~---------~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  655 WRLTANGLPEN---------EMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI  723 (1012)
T ss_pred             EEeccCCCCcc---------cCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence            99987632221         11455678888866  99999976678899999999999999999999999999999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCC----CeEEEEEeccc
Q 021160          198 NQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQRR  268 (316)
Q Consensus       198 ~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~~~~~w~~~~~  268 (316)
                      ..++|+|+|+.+|+.+.||+|++|+.+...  +..-.+....--....|.-++++++..+.|    ..+.+++.++-
T Consensus       724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            999999999999999999999999998876  333333222222233366788888877766    45666766553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.2e-17  Score=123.06  Aligned_cols=223  Identities=13%  Similarity=0.130  Sum_probs=146.6

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCC-CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  114 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  114 (316)
                      .|.+-+++|.+ ++|++|..+|+|.+..+.+..-... .....++-.      ..+|.+++..++|.  ..+|+++.||.
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~------eqahdgpiy~~~f~--d~~Lls~gdG~   82 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVP------EQAHDGPIYYLAFH--DDFLLSGGDGL   82 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceee------ccccCCCeeeeeee--hhheeeccCce
Confidence            56777899998 8999999999999999874321110 001111111      27899999999998  45888888999


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  194 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~  194 (316)
                      |+-|..+..... ......+.+..  +.+.-....  ..|+++.. .|..+-++.++.|+.++-||+++|+....+++|+
T Consensus        83 V~gw~W~E~~es-~~~K~lwe~~~--P~~~~~~ev--PeINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   83 VYGWEWNEEEES-LATKRLWEVKI--PMQVDAVEV--PEINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             EEEeeehhhhhh-ccchhhhhhcC--ccccCcccC--CccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence            999988754211 01111111110  111101111  23788877 7776667777789999999999999999999999


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccccee-------eeecCCCCceeEEecCCCeEEEEEec
Q 021160          195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK-------ANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +-|.+++--.....+++|++||++|+||.++++ ...+.....+-..       +.+...+..+++++. .-.+.+|.++
T Consensus       157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLr  235 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLR  235 (325)
T ss_pred             ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEecc
Confidence            999999885556678999999999999999887 3333222111100       011223455666654 4567899988


Q ss_pred             ccCcceeE
Q 021160          267 RRQTLAYR  274 (316)
Q Consensus       267 ~~~~~~~~  274 (316)
                      ..+....+
T Consensus       236 sse~t~vf  243 (325)
T KOG0649|consen  236 SSESTCVF  243 (325)
T ss_pred             CCCceEEE
Confidence            76554433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=5.8e-18  Score=141.98  Aligned_cols=233  Identities=13%  Similarity=0.155  Sum_probs=166.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      -|.|-|++++.....+--.+....       ....|+.+.|+|-+...||+++.||.|++|.+..+.+.        -..
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~-------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------e~~  666 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLF-------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------ENE  666 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccc-------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------ccc
Confidence            478899999876543332222222       24579999999988899999999999999999876531        112


Q ss_pred             cccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      ..+..++.+|...|+++.|+|-. ..|++ +.|-+|++||+.++                +....+.+|++.  |.+++|
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW  728 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW  728 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh----------------hhhheeccCcCc--eeEEEE
Confidence            24455558899999999999965 46666 57999999999998                778889999988  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCe-eEEEeecCc-cceEEEEEcCCCCeEEEEeCCC----cEEEecCCCCCCCCCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDR-HVVNQLEPHPHIPMFATCGIEK----TVKLWAPMPTDFPPLPD  233 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~  233 (316)
                       +|+|+.+++.+.||++++|..++++ .++.-++.. ..-..+.|.-++++++..+.|.    .|.+||.++-....+..
T Consensus       729 -SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t  807 (1012)
T KOG1445|consen  729 -SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT  807 (1012)
T ss_pred             -CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence             9999999999999999999988764 343333221 2334577888999987777664    58888877654333221


Q ss_pred             Cc---ccceeeeecCCC-CceeEEecCCCeEEEEEeccc
Q 021160          234 NA---EKIMKANKQGRE-DHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       234 ~~---~~~~~~~~~~~~-~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ..   .+-.-+-.+..| +-+++++-.|..|.++.+.-.
T Consensus       808 ~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  808 QVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             eeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            11   110001112233 456788889999999987544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=1.2e-18  Score=149.99  Aligned_cols=234  Identities=18%  Similarity=0.314  Sum_probs=180.0

Q ss_pred             cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      +..||..+|+|+.|...| .++++|+.|..++||..++..              |.... .+|.+.|+.++.+....+++
T Consensus       185 rLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~ia  248 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIA  248 (1113)
T ss_pred             HHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhh
Confidence            345899999999999999 999999999999999999887              44444 89999999999998888888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----  183 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~----  183 (316)
                      ++ .|..|++|.+..+                .++..+.+|++.  |++++| +|-.    +.+.||++++||.+-    
T Consensus       249 aaS~D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~  305 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRI  305 (1113)
T ss_pred             hcccCceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccc
Confidence            74 7999999999998                799999999977  999999 7754    778899999999761    


Q ss_pred             ----------CeeEEEe----------ec------CccceEEEEEcCCCCeEEE-----------EeCCCcEEEecCCCC
Q 021160          184 ----------GKLVRLM----------VG------DRHVVNQLEPHPHIPMFAT-----------CGIEKTVKLWAPMPT  226 (316)
Q Consensus       184 ----------~~~~~~~----------~~------~~~~v~~~~~~p~~~~l~s-----------~~~d~~i~iwd~~~~  226 (316)
                                +.+...+          .+      ....+..++|....-.+++           +-.+..+++|++.++
T Consensus       306 y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g  385 (1113)
T KOG0644|consen  306 YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG  385 (1113)
T ss_pred             cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence                      0111000          00      0011222334333333333           334567889999888


Q ss_pred             C-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCccee----------EEeecccccccccCCCCeEEEE
Q 021160          227 D-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLL  295 (316)
Q Consensus       227 ~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~  295 (316)
                      . .+.+.+|...++.+.....+.+..++.+.||...|||+..+-....          ..|++++..++..++-|.+|++
T Consensus       386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence            7 6777788888877775566888999999999999999987633322          2688899999999999999999


Q ss_pred             eccCCC
Q 021160          296 GFSDSD  301 (316)
Q Consensus       296 ~~~~~~  301 (316)
                      ++..++
T Consensus       466 g~gqs~  471 (1113)
T KOG0644|consen  466 GTGQSK  471 (1113)
T ss_pred             ccCCCc
Confidence            987664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=6.6e-17  Score=126.03  Aligned_cols=256  Identities=13%  Similarity=0.092  Sum_probs=168.4

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      |.|+++|..+.+....+.           +|+..++.++|... ++..+.+++.||+|++||++.....       +...
T Consensus        50 gsv~lyd~~tg~~l~~fk-----------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------a~~~  111 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFK-----------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------ARIS  111 (376)
T ss_pred             CeEEEEeccchhhhheec-----------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------hhee
Confidence            678888887766555554           46778889998764 6689999999999999999976521       1111


Q ss_pred             cccccccCCCc-ccEEEEEEccCCCeEEEec-----CCcEEEEEcCCCCCCCCccCCccccccCC-CcceeeCCcCCcee
Q 021160           82 FCPRHLIGKNN-IHITGLAYSNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTV  154 (316)
Q Consensus        82 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i  154 (316)
                      +      ..+. .+..+++.+..+++++++.     +-.|.+||++...               + .......|.+.  |
T Consensus       112 ~------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--V  168 (376)
T KOG1188|consen  112 W------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--V  168 (376)
T ss_pred             c------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---------------chhhhhhhhccCc--c
Confidence            1      2333 4677888777777887753     6779999999873               2 22345677766  9


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEeccCCee---EEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC-CC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-FP  229 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~-~~  229 (316)
                      +++.|++.+.++|++||.||.|.+||++....   +...-.|...|..+.|+.++ +.|.+-+...+..+|+++.+. ..
T Consensus       169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             eeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            99999877899999999999999999875421   22223466789999998876 347777889999999998765 21


Q ss_pred             CCCCC--cc-------c-ceeeeecCC-C-CceeEEecCCCeEEEEEecc---cC------------cceeE--Eeeccc
Q 021160          230 PLPDN--AE-------K-IMKANKQGR-E-DHSRITLTPDVIMHVLRLQR---RQ------------TLAYR--ERRYNA  280 (316)
Q Consensus       230 ~~~~~--~~-------~-~~~~~~~~~-~-~~~~~s~~~d~~~~~w~~~~---~~------------~~~~~--~~~~~~  280 (316)
                      .+...  ..       . -+-+....+ + +...+.++.-+...++.+..   +.            ..+.+  .+....
T Consensus       249 ~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~  328 (376)
T KOG1188|consen  249 WLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN  328 (376)
T ss_pred             cccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc
Confidence            12111  00       0 011222323 2 33344444345555554431   11            11111  244556


Q ss_pred             ccccccCCCCeEEEEeccC
Q 021160          281 ADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       281 ~~~~~~~~~~~v~~~~~~~  299 (316)
                      ..+.+++++|.+.+|...|
T Consensus       329 ~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  329 DVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             ceeeccCCCceEEEEecCC
Confidence            6777889999999998743

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=2.9e-16  Score=132.84  Aligned_cols=244  Identities=14%  Similarity=0.163  Sum_probs=187.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  109 (316)
                      -||..-|+++-|+|.+ ..|++++.|.++.+|...+..-+.       +...+...+ .+.........|+|++..+++ 
T Consensus       264 ~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiW-------v~~vRlGe~-gg~a~GF~g~lw~~n~~~ii~~  334 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIW-------VDVVRLGEV-GGSAGGFWGGLWSPNSNVIIAH  334 (764)
T ss_pred             cCcccceEEEEEccch-hhheecccCcceEEEecCCccceE-------EEEEEeecc-cccccceeeEEEcCCCCEEEEe
Confidence            4999999999999998 899999999999999987542100       111122222 344567888999999997777 


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe----
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK----  185 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~----  185 (316)
                      +..|..++|.....             ..........||...  |.+++| .|.|.+|++.+.|.+-|+|-.-..+    
T Consensus       335 g~~Gg~hlWkt~d~-------------~~w~~~~~iSGH~~~--V~dv~W-~psGeflLsvs~DQTTRlFa~wg~q~~wH  398 (764)
T KOG1063|consen  335 GRTGGFHLWKTKDK-------------TFWTQEPVISGHVDG--VKDVDW-DPSGEFLLSVSLDQTTRLFARWGRQQEWH  398 (764)
T ss_pred             cccCcEEEEeccCc-------------cceeecccccccccc--ceeeee-cCCCCEEEEeccccceeeeccccccccee
Confidence            78999999983321             011233456789877  999999 9999999999999998887543000    


Q ss_pred             -------------eE------------------E----------------------------------------------
Q 021160          186 -------------LV------------------R----------------------------------------------  188 (316)
Q Consensus       186 -------------~~------------------~----------------------------------------------  188 (316)
                                   ++                  +                                              
T Consensus       399 EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e  478 (764)
T KOG1063|consen  399 EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGE  478 (764)
T ss_pred             eecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccc
Confidence                         00                  0                                              


Q ss_pred             -----------------------------------------EeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEec
Q 021160          189 -----------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWA  222 (316)
Q Consensus       189 -----------------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~-----~i~iwd  222 (316)
                                                               .+.+|.-.|.+++.+|+++++|+++...     .|++|+
T Consensus       479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~  558 (764)
T KOG1063|consen  479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWN  558 (764)
T ss_pred             cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence                                                     3446777899999999999999998554     599999


Q ss_pred             CCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC-------------cceeE-EeecccccccccC
Q 021160          223 PMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ-------------TLAYR-ERRYNAADFESDE  287 (316)
Q Consensus       223 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~-------------~~~~~-~~~~~~~~~~~~~  287 (316)
                      ...-. ...+.+|.-.+..+. ++++++++++.+.|.++.+|..++..             ..++. .+.|+...+++.+
T Consensus       559 t~~W~~~~~L~~HsLTVT~l~-FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS  637 (764)
T KOG1063|consen  559 TANWLQVQELEGHSLTVTRLA-FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS  637 (764)
T ss_pred             ccchhhhheecccceEEEEEE-ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec
Confidence            88766 667889999887777 99999999999999999999876532             22233 6888998899998


Q ss_pred             CCCeEEEEeccCC
Q 021160          288 EEGETYLLGFSDS  300 (316)
Q Consensus       288 ~~~~v~~~~~~~~  300 (316)
                      -|..|.+|...++
T Consensus       638 RDK~VkVW~~~~~  650 (764)
T KOG1063|consen  638 RDKKVKVWEEPDL  650 (764)
T ss_pred             CCceEEEEeccCc
Confidence            8889999998877

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=3.1e-16  Score=121.60  Aligned_cols=246  Identities=9%  Similarity=0.147  Sum_probs=173.7

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc-------cCCCeEEE
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLIS  109 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~s  109 (316)
                      ...+.|+|+| ..|++-+.|..+++|++...-.......+.++..  ...+.-.....|..-.|-       |+..++++
T Consensus        52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~--~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSK--HLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCcccccc--ceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            4578999999 8999999999999999974322111000111100  001101123445666664       34455555


Q ss_pred             -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eeeeEEEecCCCcEEEEeccCCeEEEEec-cCC
Q 021160          110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGG  184 (316)
Q Consensus       110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~v~~wd~-~~~  184 (316)
                       +.+.-|++||.-++                +....+.+.....   ...+++| +|||.+|++|- ...|++||+ +.|
T Consensus       129 ssr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaGy-krcirvFdt~RpG  190 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAGY-KRCIRVFDTSRPG  190 (406)
T ss_pred             ccccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeecc-cceEEEeeccCCC
Confidence             57999999999888                4555554332211   2578999 99999998764 789999998 555


Q ss_pred             eeEEEee-------cCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEec
Q 021160          185 KLVRLMV-------GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       185 ~~~~~~~-------~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      .-...+.       +..+-+.+++|+|... .++.++.-..+-||.-.... +..+.+|...|..+. |..+++.++++.
T Consensus       191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~-~~edGn~lfsGa  269 (406)
T KOG2919|consen  191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ-WCEDGNKLFSGA  269 (406)
T ss_pred             CCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE-eccCcCeecccc
Confidence            4332221       2356789999999776 69999998999898877766 777788999886666 888888888877


Q ss_pred             C-CCeEEEEEeccc--------------CcceeEEeecccccccccCCCCeEEEEeccC-CCCCC
Q 021160          256 P-DVIMHVLRLQRR--------------QTLAYRERRYNAADFESDEEEGETYLLGFSD-SDASS  304 (316)
Q Consensus       256 ~-d~~~~~w~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  304 (316)
                      . +-.|-.||++.-              ++.++++..|++..+++++.+|.|.+||..+ +++-+
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            5 788999999742              3455668889999999999999999999988 55433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=6.8e-16  Score=121.68  Aligned_cols=159  Identities=16%  Similarity=0.210  Sum_probs=127.5

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e--
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y--  110 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~--  110 (316)
                      +.+|.++.++.   +.+++.-. ..|.|||+++.++++++.           .. ..+...+.++++++.+.+++- +  
T Consensus        87 pt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~-----------t~-~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   87 PTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIE-----------TT-PPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             CCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhh-----------cc-CCCccceEeeccCCCCceEEecCCC
Confidence            56788999987   34555554 449999999998544321           00 234556777777777778887 3  


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe-EEEEeccCCeeEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~~wd~~~~~~~~~  189 (316)
                      ..|.|.+||+.+-                +++..+..|...  +.+++| +++|.+||++++.|+ ||++.+.+|+.+..
T Consensus       151 t~GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  151 TSGDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             CCceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence            4899999999887                788889999977  999999 999999999999997 68999999999998


Q ss_pred             eecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          190 MVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       190 ~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      |...  ...|.+++|+|++++|++.|..++|.|+.+....
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            8643  3578999999999999999999999999987654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=2.2e-17  Score=131.38  Aligned_cols=182  Identities=15%  Similarity=0.227  Sum_probs=140.9

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ..+|.++.|.+...+.+++|+.|..|++|-+....-.      ...........+..|...|+++.|+|+|++|+++ .+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCC------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence            4589999999988569999999999999999866411      1001112223347899999999999999999996 68


Q ss_pred             CcEEEEEcCCCCCCCCccC-CccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          113 ELVYLFEKNMGLGPSPLSL-SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      |.|.+|-...- .+....- .-.+.+.+...+.+.+|...  +..++| +|++.++++++.|..+++||+..|+....+.
T Consensus        87 g~v~lWk~~~~-~~~~~d~e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   87 GEVFLWKQGDV-RIFDADTEADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             ceEEEEEecCc-CCccccchhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEeecc
Confidence            89999987631 1110000 00111223445667788866  999999 9999999999999999999999999999999


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      .|..-++.++|.|-++++++-+.|...+++.+..
T Consensus       163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             ccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            9999999999999999999999998777777654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.5e-17  Score=130.30  Aligned_cols=194  Identities=11%  Similarity=0.111  Sum_probs=140.6

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEE
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVY  116 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~  116 (316)
                      .+++|+++| ..+++|+.||++|+|+.+...              ..... ..|...|.++.|+|||++|++ +.| ..+
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~--------------t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~  210 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSML--------------TILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR  210 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcch--------------hhhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence            689999999 899999999999999977664              22222 567889999999999999999 567 999


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-----cEEEEeccCCeEEEEeccCCee-----
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL-----  186 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~v~~wd~~~~~~-----  186 (316)
                      ||+++++                ..+..............+.| +.++     ..++.....+.|+.|++...+-     
T Consensus       211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~  273 (398)
T KOG0771|consen  211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR  273 (398)
T ss_pred             EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence            9999988                34444332222122556666 6665     2333334456677766543211     


Q ss_pred             -EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          187 -VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       187 -~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                       .+.+. ....|.+++.+++|+++|.|+.||.|-|++....+ ++-. ..|...|..+ .+.|+.+++++.+.+...++.
T Consensus       274 ~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l-tF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  274 LRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL-TFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             hhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE-EEcCCcCcccccccCCceeEE
Confidence             11112 23479999999999999999999999999998876 3323 3465655444 499999999999999999988


Q ss_pred             Eecc
Q 021160          264 RLQR  267 (316)
Q Consensus       264 ~~~~  267 (316)
                      .+.-
T Consensus       352 ~l~v  355 (398)
T KOG0771|consen  352 KLAV  355 (398)
T ss_pred             EEee
Confidence            7764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=3.9e-15  Score=128.31  Aligned_cols=220  Identities=20%  Similarity=0.321  Sum_probs=163.4

Q ss_pred             ceeeEEEEeeC-CCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      ++.+++||+.. ......+.           +|...|.+++|+|++ ..+++++. |+.+++|++....           
T Consensus       133 d~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------  189 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLE-----------GHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK-----------  189 (466)
T ss_pred             CccEEEEEecCCCeEEEEEe-----------cCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc-----------
Confidence            57899999987 33333333           378889999999999 68888875 9999999998744           


Q ss_pred             eecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcc-eeeCCcCCceeee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKG  156 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~  156 (316)
                         ....+ .+|...+.+++|+|++. ++++ +.|+.|++||...+                .... .+.+|...  . .
T Consensus       190 ---~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~--~-~  246 (466)
T COG2319         190 ---PLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----------------KLLRSTLSGHSDS--V-V  246 (466)
T ss_pred             ---eEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC----------------cEEeeecCCCCcc--e-e
Confidence               12222 55899999999999997 6666 57999999988755                4444 57777754  3 2


Q ss_pred             EEEecCCCcEEEEeccCCeEEEEeccCCee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC--
Q 021160          157 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP--  232 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--  232 (316)
                      ..| ++++.++++++.++.+++|+...... +..+..|...+.++.|+|++..+++++.|+.+++|+..... .....  
T Consensus       247 ~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  325 (466)
T COG2319         247 SSF-SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK  325 (466)
T ss_pred             EeE-CCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeec
Confidence            256 88888999999999999999986654 44446788999999999988888888889889999888765 22222  


Q ss_pred             CCcccceeeeecCCCCceeE-EecCCCeEEEEEecccC
Q 021160          233 DNAEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~w~~~~~~  269 (316)
                      .|...+..... .+++..++ .+..|+.+.+|++....
T Consensus       326 ~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         326 GHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             ccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence            45555555554 43323444 44678899999988765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=1.8e-16  Score=119.51  Aligned_cols=242  Identities=12%  Similarity=0.149  Sum_probs=165.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCC---------
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP---------   72 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~---------   72 (316)
                      .|.|++|++.+.+....+...          |...|+.+..-|++  .+.+-+.|+.+.+|++.-......         
T Consensus        34 ~G~V~~w~lqt~r~~~~~r~~----------g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg  101 (323)
T KOG0322|consen   34 VGIVKMWVLQTERDLPLIRLF----------GRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG  101 (323)
T ss_pred             cceEEEEEeecCccchhhhhh----------ccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccc
Confidence            589999999999887777754          56789999999864  688889999999999976332110         


Q ss_pred             -----C-CCCCCce-----------------------ecccccccCCCcccEEEEEEccC-CC--eEEEe-cCCcEEEEE
Q 021160           73 -----I-SSDTPVD-----------------------TFCPRHLIGKNNIHITGLAYSNT-SE--LLISY-NDELVYLFE  119 (316)
Q Consensus        73 -----~-~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~~~~~~-~~--~l~s~-~d~~i~iwd  119 (316)
                           + ..+.+..                       ......-..+..+.+.+..+..+ +.  ++++| .+|.+.+||
T Consensus       102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd  181 (323)
T KOG0322|consen  102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD  181 (323)
T ss_pred             cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence                 0 0000000                       00000001123456777775443 33  44445 699999999


Q ss_pred             cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC--CeeE--EEeecCcc
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLV--RLMVGDRH  195 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~--~~~~--~~~~~~~~  195 (316)
                      +..+......      ....+.......|..+  +.++.| .+.-..=++|+.+..+..|+++.  +.+.  ..+.....
T Consensus       182 ~S~~~~~~~~------~~~~kv~~~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp  252 (323)
T KOG0322|consen  182 LSTGDKIIQL------PQSSKVESPNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP  252 (323)
T ss_pred             ccCCceeecc------ccccccccchhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence            9886211100      1111233445566655  999998 55545556777777888888763  3221  12222345


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .|..+.+-||++++||++.|+.||||..++.. +..+..|...+..++ ++++.+++++++.|+.|.+|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA-fspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA-FSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE-eCCCCchhhhccCCceEEeeec
Confidence            78889999999999999999999999999988 788888988876666 8999999999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2e-16  Score=123.44  Aligned_cols=191  Identities=14%  Similarity=0.223  Sum_probs=140.2

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGL  124 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~  124 (316)
                      +.+|++-+.|.|++||..+++..              ..+ .++...+..++|..+  ...+.+ +.||+|++||++...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~  105 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA  105 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence            56899999999999999998632              222 667777888888774  345555 589999999998762


Q ss_pred             CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----CCeEEEEeccCCee-EEEe-ecCccceE
Q 021160          125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN  198 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~~wd~~~~~~-~~~~-~~~~~~v~  198 (316)
                                    ......+..+.. ....+++. .-.++.+++|++    +-.|.+||++..+. +..+ ..|...|+
T Consensus       106 --------------e~a~~~~~~~~~-~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen  106 --------------ESARISWTQQSG-TPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             --------------hhhheeccCCCC-CcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence                          022333444441 23666665 557788888865    66799999997765 5554 57999999


Q ss_pred             EEEEcCCCC-eEEEEeCCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          199 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       199 ~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      +++|+|..+ +|++||.||.|.+||+....    +...-.+...|..+.|.++.-..+.+.+......+|+++.+.
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            999999765 59999999999999997653    333334566676777666654568899999999999998764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=131.33  Aligned_cols=170  Identities=18%  Similarity=0.251  Sum_probs=126.5

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC-----CCCCC-
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-----PISSD-   76 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~-----~~~~~-   76 (316)
                      |.|++.|....+..+++......       .+..|+++.|-|.+..+|+++-.+|.+.+||..-..-..     .++.+ 
T Consensus       195 Gqvq~idp~~~~~sklfne~r~i-------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~  267 (636)
T KOG2394|consen  195 GQVQLIDPINFEVSKLFNEERLI-------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD  267 (636)
T ss_pred             CceEEecchhhHHHHhhhhcccc-------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence            66777776653333333322221       246899999999887899999999999999873211000     00000 


Q ss_pred             -------------CCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCc
Q 021160           77 -------------TPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEP  142 (316)
Q Consensus        77 -------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  142 (316)
                                   .|+..+      ..-.+.|...+|+|||++||+ +.||.++|||..+.                +++
T Consensus       268 ~f~i~t~ksk~~rNPv~~w------~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----------------eLl  325 (636)
T KOG2394|consen  268 QFAILTSKSKKTRNPVARW------HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----------------ELL  325 (636)
T ss_pred             eeEEeeeeccccCCcccee------EeccccccceeEcCCCceEEEEecCceEEEeeccHH----------------HHH
Confidence                         111111      112457899999999999999 68999999999887                566


Q ss_pred             ceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160          143 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP  204 (316)
Q Consensus       143 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p  204 (316)
                      -.++..-..  ..|++| +|||++|++|++|--|.+|.+...+.+..-.+|++.|..++|.|
T Consensus       326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            666666655  999999 99999999999999999999999999999999999999999987

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=7.9e-16  Score=132.67  Aligned_cols=241  Identities=15%  Similarity=0.124  Sum_probs=164.9

Q ss_pred             CceeeEEEEeeCCCcc--eEEEeccccccccCCCCccceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            1 MVLFNMLFDLRSDSAT--RLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~--~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      +.|+|.+||++.....  ..+....       ..|..+|+.+.|..+.. .-|++++.||.|..|+++.-..        
T Consensus       263 y~GqV~lWD~~~~~~~~~s~ls~~~-------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~--------  327 (555)
T KOG1587|consen  263 YNGQVVLWDLRKGSDTPPSGLSALE-------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL--------  327 (555)
T ss_pred             cCceEEEEEccCCCCCCCccccccc-------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc--------
Confidence            3699999999987653  2233332       34999999999976431 3589999999999998875432        


Q ss_pred             Cceeccccccc-----CCCcccEEEEEEccCC--CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC
Q 021160           78 PVDTFCPRHLI-----GKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN  150 (316)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (316)
                      |..........     ..-...+++++|.+..  ++++++.+|.|..-+-........        ...+....+..|..
T Consensus       328 P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  328 PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------VSYKGHSTFITHIG  399 (555)
T ss_pred             chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--------ccccccccccccCc
Confidence            11111111110     1224568899998865  377777899988744332210000        00022334555665


Q ss_pred             CceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-
Q 021160          151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-  227 (316)
Q Consensus       151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-  227 (316)
                      .  |..+.+ +|=+..++..+.|.+++||.-. ...++..+..+...+++++|||..+. |+++..||.|.+||+.... 
T Consensus       400 ~--v~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  400 P--VYAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             c--eEeeec-CCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence            5  999998 6655544444449999999987 66777777778888999999998876 8888899999999997654 


Q ss_pred             --CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          228 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       228 --~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                        ..+..-. ..++....++..+..++.|...|.++++++...
T Consensus       477 ~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  477 EPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence              3333323 556667768888999999999999999998643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.7e-16  Score=129.99  Aligned_cols=170  Identities=17%  Similarity=0.223  Sum_probs=128.1

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~  108 (316)
                      .||.+-|++++|+.+| .+|++|+.|-.+.|||.-..+              ....+..+|...|.++.|-|..  ++++
T Consensus        47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             ccccceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEE
Confidence            4899999999999999 899999999999999998776              4555568999999999999965  3777


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCee
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      ++ .|..|+++|+......      ..+-........+..|...  |..++- .|++ ..+.++++||+++-+|++....
T Consensus       112 sgAgDk~i~lfdl~~~~~~------~~d~~~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEG------GMDHGMEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             eccCcceEEEEeccccccc------ccccCccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCcc
Confidence            75 7999999999852100      0000001345566777765  888887 6666 7899999999999999986332


Q ss_pred             EEE-------e---ecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCC
Q 021160          187 VRL-------M---VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  224 (316)
Q Consensus       187 ~~~-------~---~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~  224 (316)
                      ...       +   ...--...++.++|..++ ||.|+.|-..++||.+
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            111       1   111124678999998765 8999999999999954

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=1.2e-14  Score=125.34  Aligned_cols=222  Identities=18%  Similarity=0.320  Sum_probs=165.7

Q ss_pred             ceeeEEEEeeCCC-cceEEEeccccccccCCCCccceEEEEE-CCCCCcEEEEEec-CCcEEEEeCcC-CcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVI-DPRNPNYFAVGGS-DEYARVYDIRK-CHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~gh~~~v~~~~~-~~~~~~~l~~g~~-dg~v~~wd~~~-~~~~~~~~~~~   77 (316)
                      ++.+.+|+..... ....+...          +...+..+.+ ++++..+++..+. |+.+.+|+... ..         
T Consensus        86 d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------  146 (466)
T COG2319          86 DGTIKLWDLDNGEKLIKSLEGL----------HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---------  146 (466)
T ss_pred             CCcEEEEEcCCCceeEEEEecc----------CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe---------
Confidence            6789999998775 33333321          1125666676 7877325555444 99999999986 32         


Q ss_pred             CceecccccccCCCcccEEEEEEccCCCeEEEe-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                            .......|...|..++|+|++..++++ . |+.+++|+....                .....+.+|...  +.
T Consensus       147 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~  202 (466)
T COG2319         147 ------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----------------KPLSTLAGHTDP--VS  202 (466)
T ss_pred             ------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----------------ceEEeeccCCCc--eE
Confidence                  222226788899999999999877764 3 999999999875                577778888766  99


Q ss_pred             eEEEecCCCc-EEEEeccCCeEEEEeccCCeeEE-EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC--CCC
Q 021160          156 GVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--PPL  231 (316)
Q Consensus       156 ~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~--~~~  231 (316)
                      +++| +|++. .+++++.|+.+++||...+..+. .+..|.... -..|+|++..+++++.|+.+++|+......  ..+
T Consensus       203 ~~~~-~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (466)
T COG2319         203 SLAF-SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL  280 (466)
T ss_pred             EEEE-cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE
Confidence            9999 78888 55555999999999988888887 688887765 348999998888999999999999986552  233


Q ss_pred             CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ..|...+.... +.+++..+++++.|+.+++|++....
T Consensus       281 ~~~~~~v~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         281 SGHSSSVLSVA-FSPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             ecCCccEEEEE-ECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence            45556665554 66677777778888889999877553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=8.9e-16  Score=129.79  Aligned_cols=241  Identities=11%  Similarity=0.087  Sum_probs=172.7

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .|.++|.+.+.....+           +||+..|++++|+.+| ..+|+|+.|..|.+|+..-.                
T Consensus        34 rlliyD~ndG~llqtL-----------KgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klE----------------   85 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQPL-----------KGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLE----------------   85 (1081)
T ss_pred             EEEEEeCCCccccccc-----------ccccceEEEEEEccCC-ceeccCCCceeEEEeccccc----------------
Confidence            4667777666554333           4689999999999999 99999999999999987622                


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  163 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (316)
                       ..+.-.|.+.|.|+.|+|-...|++++=...-+|.....                 .+..   +.....+.+++| ..|
T Consensus        86 -G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK-----------------~V~K---~kss~R~~~CsW-tnD  143 (1081)
T KOG1538|consen   86 -GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK-----------------SVSK---HKSSSRIICCSW-TND  143 (1081)
T ss_pred             -ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh-----------------hHHh---hhhheeEEEeee-cCC
Confidence             222357899999999999999999976666778887653                 2222   222234889998 999


Q ss_pred             CcEEEEeccCCeEEEEeccCCeeEEEe---ecCccceEEEEEcCCC-----CeEEEEeCCCcEEEecCCCCCCCCCCCCc
Q 021160          164 DEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNA  235 (316)
Q Consensus       164 ~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~p~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  235 (316)
                      |++++.|-.+|+|.+-+-. ++....+   .+..++|.+++|+|..     ..++......++.+|.+.+..+..-+.-.
T Consensus       144 GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~  222 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN  222 (1081)
T ss_pred             CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCC
Confidence            9999999999999988644 4333333   2467899999999963     45888888889999998876533222111


Q ss_pred             ccceeeeecCCCCceeEEecCCCeEEEEEecc--------cCcceeE-EeecccccccccCCCCeEEEEe
Q 021160          236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQR--------RQTLAYR-ERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                      .....+ ..-+++.+++.|+.|+.++++--..        ....++. ...|.+..++.+..+|++-.+.
T Consensus       223 FdP~Ci-sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  223 FDPCCI-SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CCchhh-eeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            112222 2557889999999999999985322        1222333 5677788888888887775554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.2e-15  Score=117.80  Aligned_cols=245  Identities=12%  Similarity=0.131  Sum_probs=169.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +|.+-|+++.|+.++ ++|++|+.|..+++|+++..-...   .+.|+...     ...|...|.|++|...++++.++ 
T Consensus        54 ~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---~~KPI~~~-----~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   54 EHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---TPKPIGVM-----EHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             hhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---CCCCceec-----cCccccceEEEEEccCCeeEecCC
Confidence            799999999999998 899999999999999997432111   12222221     13466899999999988888886 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~  189 (316)
                      .+++|.+.|+++.                +.+..+....+...|+.+.. +|..+.+++.+.++.|.+||.+..+ .+..
T Consensus       125 ~~~~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  125 RWGTVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             CcceeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            7999999999987                45555554443345999998 8889999999999999999987654 2222


Q ss_pred             e--ecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCCC--------CCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          190 M--VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       190 ~--~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      +  ........++.|+|..+. |++++..+-+-+||.+....        ..++.....-+... |++.+..+++.-...
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~-~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL-WSPSGNQFMSIRRGK  266 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee-eCCCCCeehhhhccC
Confidence            1  223456788999998765 78888899999999986541        12222122223444 677777777766665


Q ss_pred             eEEEEEecccCcc---------eeE--------EeecccccccccCCCCeEEEEeccCCCCCC
Q 021160          259 IMHVLRLQRRQTL---------AYR--------ERRYNAADFESDEEEGETYLLGFSDSDASS  304 (316)
Q Consensus       259 ~~~~w~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  304 (316)
                      .-.++|+-.....         .|+        ++.. ...++++.++=-+|+|.+....++-
T Consensus       267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~  328 (609)
T KOG4227|consen  267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSY  328 (609)
T ss_pred             CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCcccc
Confidence            5555555442222         121        2322 3347777777779999987766654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=2e-14  Score=113.47  Aligned_cols=193  Identities=10%  Similarity=0.171  Sum_probs=144.4

Q ss_pred             ceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      .|-.+-|+.   .++|..+.+  +.+++++++.+..+            |....    ..+|.++.++.+  .|+..-..
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr~--RLvV~Lee  106 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNRK--RLVVCLEE  106 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEccc--eEEEEEcc
Confidence            455666765   345555433  45888988876532            33222    457888888754  56665556


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEEec--cCCeEEEEeccCCeeEEEe
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|+|||+...                +.++++..- .++..+..+++ ++.+.+++--+  ..|.|.+||..+-+.+..+
T Consensus       107 ~IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I  169 (391)
T KOG2110|consen  107 SIYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTI  169 (391)
T ss_pred             cEEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence            6999999988                677777654 34333666665 55666777543  4789999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCc-EEEecCCCCC-CCCCCCC--cccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~-i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ..|.+.+.+++|+|+|.+|||+|+.|+ |||+.+..++ +.+++-.  ...+++++ +++++.++.+.+..++|+++.+.
T Consensus       170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS-FSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE-ECCCCCeEEEecCCCeEEEEEec
Confidence            999999999999999999999999997 6999998887 5555532  33455666 89999999999999999999987


Q ss_pred             c
Q 021160          267 R  267 (316)
Q Consensus       267 ~  267 (316)
                      +
T Consensus       249 ~  249 (391)
T KOG2110|consen  249 K  249 (391)
T ss_pred             c
Confidence            5

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=8.8e-15  Score=112.04  Aligned_cols=214  Identities=11%  Similarity=0.134  Sum_probs=151.9

Q ss_pred             CCccceEEEEECCCC----CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-Ce
Q 021160           32 MNSIRLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-EL  106 (316)
Q Consensus        32 gh~~~v~~~~~~~~~----~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  106 (316)
                      .|..+++.+.|.|+.    +.+||+.+  ..+|+|.+...+...     ++ +..........+..++++..|+.-. ++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~-----~~-~~~L~~~kns~~~aPlTSFDWne~dp~~  165 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRV-----EL-QSVLNNNKNSEFCAPLTSFDWNEVDPNL  165 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCce-----eh-hhhhccCcccccCCcccccccccCCcce
Confidence            389999999999975    24566543  579999987432000     00 0000111113456789999998865 46


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      +.++ -|-+..|||++++.             .+.....+-.|..+  |..++|.-..-+.+++.+.||.+++||++..+
T Consensus       166 igtSSiDTTCTiWdie~~~-------------~~~vkTQLIAHDKE--V~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGV-------------SGTVKTQLIAHDKE--VYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             eEeecccCeEEEEEEeecc-------------ccceeeEEEecCcc--eeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            6554 59999999999861             00123445568755  99999933234678999999999999998754


Q ss_pred             eEEEe---ecCccceEEEEEcCCCC-eEEEEeCC-CcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          186 LVRLM---VGDRHVVNQLEPHPHIP-MFATCGIE-KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       186 ~~~~~---~~~~~~v~~~~~~p~~~-~l~s~~~d-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      .-..+   .....+...++|+++.. ++|+-..| ..|.|-|++...  +.++.+|...+-.++|.+.....+.+++.|.
T Consensus       231 HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  231 HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence            33322   23245788899998765 47776655 479999998776  7889999999988886666788999999999


Q ss_pred             eEEEEEeccc
Q 021160          259 IMHVLRLQRR  268 (316)
Q Consensus       259 ~~~~w~~~~~  268 (316)
                      ..-+||++.-
T Consensus       311 qaliWDl~q~  320 (364)
T KOG0290|consen  311 QALIWDLQQM  320 (364)
T ss_pred             eEEEEecccc
Confidence            9999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=1.7e-15  Score=125.03  Aligned_cols=183  Identities=11%  Similarity=0.155  Sum_probs=143.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  111 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  111 (316)
                      .|.+.+.+-.|+|+| .-|+++++||.|++|.-...                .+....-...+|.|++|.|+.+-++.+.
T Consensus       102 AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM----------------LRStl~Q~~~~v~c~~W~p~S~~vl~c~  164 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM----------------LRSTVVQNEESIRCARWAPNSNSIVFCQ  164 (737)
T ss_pred             hhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch----------------HHHHHhhcCceeEEEEECCCCCceEEec
Confidence            689999999999999 89999999999999986532                1111133467899999999998777777


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      .+.+.|=.+...                ..+-.++.|..-  |.++.| ++..+++++|++|-..++||.. |+.+..-.
T Consensus       165 g~h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~  224 (737)
T KOG1524|consen  165 GGHISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTSA  224 (737)
T ss_pred             CCeEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccCC
Confidence            778887776654                355567889866  999999 9999999999999999999987 77777777


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      .|.-+|++++|.|+ +.++.+|. .+.|+=.+          ....++.+. |++|+..+..++..|.+.+--
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p----------~~GSifnls-WS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSY-NTARFSSP----------RVGSIFNLS-WSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             hhccceeeeeeccc-cceeeeee-eeeeecCC----------CccceEEEE-EcCCCceeeccccCceEEEee
Confidence            89999999999999 66777763 45563222          334566776 888888888888888766543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=8e-15  Score=111.95  Aligned_cols=153  Identities=14%  Similarity=0.213  Sum_probs=107.8

Q ss_pred             EEEEECCCCCcEEEE-Ee---------cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           38 NAIVIDPRNPNYFAV-GG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~-g~---------~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      ..+.|+|+| .+|++ ..         .-+...+|.++...        .++     ..+.....++|.+++|+|+|+.+
T Consensus         9 ~~~~W~~~G-~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~~-----~~i~l~~~~~I~~~~WsP~g~~f   74 (194)
T PF08662_consen    9 AKLHWQPSG-DYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IPV-----ESIELKKEGPIHDVAWSPNGNEF   74 (194)
T ss_pred             EEEEecccC-CEEEEEEEEeeccCcceEEeeEEEEEEecCC--------Ccc-----ceeeccCCCceEEEEECcCCCEE
Confidence            468899999 45444 33         12446666664332        111     11112234579999999999854


Q ss_pred             EE--e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CCeEEEEec
Q 021160          108 IS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKK  181 (316)
Q Consensus       108 ~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~~wd~  181 (316)
                      +.  + .+..|.+||++.                 +.+..+..  ..  +..+.| +|+|+++++++.   .|.|.+||.
T Consensus        75 avi~g~~~~~v~lyd~~~-----------------~~i~~~~~--~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   75 AVIYGSMPAKVTLYDVKG-----------------KKIFSFGT--QP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             EEEEccCCcccEEEcCcc-----------------cEeEeecC--CC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEEC
Confidence            43  3 477999999963                 35555542  22  778998 999999999864   477999999


Q ss_pred             cCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEecCCCCCC
Q 021160          182 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF  228 (316)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~------d~~i~iwd~~~~~~  228 (316)
                      ++.+.+.... | ..++.++|+|+|++|+++..      |..++||+..+..+
T Consensus       133 ~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  133 RKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             CCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            9888887765 3 34789999999999988864      78899999876654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.9e-14  Score=107.62  Aligned_cols=200  Identities=14%  Similarity=0.228  Sum_probs=135.1

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec-ccccccCCCcccEEEEEEccCCC-eEEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNTSE-LLIS  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~s  109 (316)
                      +|.++|+.++|+.   .+|++|+. |.|+-|..+......-.   .+.-.. .+...-...--.|+++...|..+ ++.+
T Consensus        60 ahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~---K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A  132 (325)
T KOG0649|consen   60 AHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLAT---KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA  132 (325)
T ss_pred             ccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccc---hhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence            5899999999993   46676654 99999987643210000   000000 00000001123588898898765 6666


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      +.|+.++-||++++                +..+.+++|++.  +.++.- -.....+++|++||++++||.++++.+..
T Consensus       133 gGD~~~y~~dlE~G----------------~i~r~~rGHtDY--vH~vv~-R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDG----------------RIQREYRGHTDY--VHSVVG-RNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             cCCeEEEEEEecCC----------------EEEEEEcCCcce--eeeeee-cccCcceeecCCCccEEEEeccccceeEE
Confidence            79999999999999                788999999976  999986 45566789999999999999999999887


Q ss_pred             eecCc----------cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160          190 MVGDR----------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       190 ~~~~~----------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      +....          ..|-+++-  +..++++|+ -..+.+|.++..+   +..++.+...+   .   .....+++++.
T Consensus       194 ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v---~---F~~d~vl~~G~  264 (325)
T KOG0649|consen  194 IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLV---D---FVDDCVLIGGE  264 (325)
T ss_pred             eccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEe---e---eecceEEEecc
Confidence            75321          23555554  455777765 5689999999876   33344443332   1   12346777777


Q ss_pred             CCeEEEEEec
Q 021160          257 DVIMHVLRLQ  266 (316)
Q Consensus       257 d~~~~~w~~~  266 (316)
                      ...+.-|.+.
T Consensus       265 g~~v~~~~l~  274 (325)
T KOG0649|consen  265 GNHVQSYTLN  274 (325)
T ss_pred             ccceeeeeec
Confidence            7777777654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=6e-15  Score=121.72  Aligned_cols=185  Identities=15%  Similarity=0.178  Sum_probs=131.4

Q ss_pred             CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEc
Q 021160           43 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEK  120 (316)
Q Consensus        43 ~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~  120 (316)
                      .|.+ --+++|-.-|.|.+.|....+.....          -... .-....++|+.|-|.+.  ++++-.+|.+++||.
T Consensus       182 ~~~g-~dllIGf~tGqvq~idp~~~~~sklf----------ne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~  249 (636)
T KOG2394|consen  182 TPKG-LDLLIGFTTGQVQLIDPINFEVSKLF----------NEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK  249 (636)
T ss_pred             CCCC-cceEEeeccCceEEecchhhHHHHhh----------hhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence            3445 67888888899999987753321100          0000 11247899999999664  666668999999988


Q ss_pred             CCCCCCCCccCC---ccc---------cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          121 NMGLGPSPLSLS---PED---------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       121 ~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                      ............   ..+         ..+..++..+.--..  .|...+| +|||++||+.+.||.++|||..+.+++.
T Consensus       250 ~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  250 EIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             cccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeeccHHHHHH
Confidence            543221111111   110         111123333322222  3889999 8999999999999999999999988888


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeee
Q 021160          189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN  242 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  242 (316)
                      .++..-+...|++|+|||++|++|++|--|.||.+...+ +..-.+|..+|..++
T Consensus       327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va  381 (636)
T KOG2394|consen  327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA  381 (636)
T ss_pred             HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence            888777899999999999999999999999999999888 666678888876555

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.2e-14  Score=125.34  Aligned_cols=209  Identities=13%  Similarity=0.067  Sum_probs=135.3

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      ..|.+||...... +.+..           |...+.+.+|+|+| +.|+..+.+   ..|++||+.+++..         
T Consensus       184 ~~i~i~d~dg~~~-~~lt~-----------~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~---------  241 (429)
T PRK01742        184 YEVRVADYDGFNQ-FIVNR-----------SSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK---------  241 (429)
T ss_pred             EEEEEECCCCCCc-eEecc-----------CCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE---------
Confidence            4678888765443 22221           46679999999999 777776543   46999999877511         


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEE--EcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                         ..... .+|   ...++|+|+|+.|+. . .++.+.||  |+.++                 ....+..+...  +.
T Consensus       242 ---~l~~~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~  295 (429)
T PRK01742        242 ---VVASF-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NT  295 (429)
T ss_pred             ---EEecC-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cC
Confidence               11111 222   336899999996665 3 47765555  55544                 33444444433  77


Q ss_pred             eEEEecCCCcEEEEec-cCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC
Q 021160          156 GVNFFGPNDEYVMSGS-DCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD  233 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  233 (316)
                      ...| +|+|+.|+..+ .++...+|++... .....+ .+..  ...+|+|+++.|+..+.++ +.+||+.++....+..
T Consensus       296 ~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~  370 (429)
T PRK01742        296 EPSW-SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS  370 (429)
T ss_pred             CEEE-CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence            8898 99999877655 5677888876532 222233 3433  4578999999988887655 5669998876333321


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      .. .. ....|+++++.++.++.++...+|.+.
T Consensus       371 ~~-~~-~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        371 TF-LD-ESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CC-CC-CCceECCCCCEEEEEEcCCCceEEEEE
Confidence            11 11 223378899999999989888888764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.5e-13  Score=115.09  Aligned_cols=255  Identities=11%  Similarity=0.101  Sum_probs=150.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-ecCCcEEEEeCcC-CcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-~~dg~v~~wd~~~-~~~~~~~~~~~~~   79 (316)
                      +|.|.+||+.+......+..  .+       +.+....++++|++ ++|+++ ..++.|.+|++.. +++.         
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~--~~-------~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~---------   71 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQV--VD-------VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT---------   71 (330)
T ss_pred             CCCEEEEEECCCCceeeeeE--Ee-------cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE---------
Confidence            57899999964322112111  11       23456789999998 666555 4688999999973 3210         


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                         .....  ........++++|++++++++  .++.|.+|+++.....            ......+.+..   ...++
T Consensus        72 ---~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~  131 (330)
T PRK11028         72 ---FAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSA  131 (330)
T ss_pred             ---Eeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC------------CCceeeccCCC---cccEe
Confidence               00111  112245689999999966664  4899999999642100            01111222211   25677


Q ss_pred             EEecCCCcEEEEe-ccCCeEEEEeccCCeeEE-------EeecCccceEEEEEcCCCCeEEEEeC-CCcEEEecCCC--C
Q 021160          158 NFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVR-------LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--T  226 (316)
Q Consensus       158 ~~~~~~~~~l~~~-~~dg~v~~wd~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~iwd~~~--~  226 (316)
                      ++ +|++++++++ ..++.|.+||+.+...+.       .... ......++|+|+++++++++. ++.|.+|++..  +
T Consensus       132 ~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~  209 (330)
T PRK11028        132 NI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG  209 (330)
T ss_pred             Ee-CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence            88 8999888655 457999999997633221       1111 234678999999999877765 89999999973  2


Q ss_pred             CC---CC---CCCC---cccceeeeecCCCCceeEEec-CCCeEEEEEecccCc-ce------------eEEeecccccc
Q 021160          227 DF---PP---LPDN---AEKIMKANKQGREDHSRITLT-PDVIMHVLRLQRRQT-LA------------YRERRYNAADF  283 (316)
Q Consensus       227 ~~---~~---~~~~---~~~~~~~~~~~~~~~~~~s~~-~d~~~~~w~~~~~~~-~~------------~~~~~~~~~~~  283 (316)
                      .+   ..   ++..   ...... ..++++++++.++. .++.|.+|++..... ..            ...+.+++..+
T Consensus       210 ~~~~~~~~~~~p~~~~~~~~~~~-i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l  288 (330)
T PRK11028        210 EIECVQTLDMMPADFSDTRWAAD-IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYL  288 (330)
T ss_pred             CEEEEEEEecCCCcCCCCcccee-EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEE
Confidence            21   11   1111   111111 23567887777664 578999999864321 11            11344555555


Q ss_pred             cc-cCCCCeEEEEecc
Q 021160          284 ES-DEEEGETYLLGFS  298 (316)
Q Consensus       284 ~~-~~~~~~v~~~~~~  298 (316)
                      .. ...++.|.+|..+
T Consensus       289 ~va~~~~~~v~v~~~~  304 (330)
T PRK11028        289 IAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEccCCcEEEEEEc
Confidence            53 3346667777654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=7.6e-15  Score=121.23  Aligned_cols=207  Identities=10%  Similarity=0.098  Sum_probs=153.9

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP  126 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~  126 (316)
                      ..|+.++.||.+.+.+-. ++               ......+|.+.+.+-.|+|+|.-|++ |.||.|++|.-...   
T Consensus        76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---  136 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---  136 (737)
T ss_pred             ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---
Confidence            578889999999988754 32               22223789999999999999985555 78999999986553   


Q ss_pred             CCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160          127 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  206 (316)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~  206 (316)
                                    ...++....  ..|.|++| .|+.+.++-+. .+.+.+=.+.....+-..++|.+-|.++.|+|..
T Consensus       137 --------------LRStl~Q~~--~~v~c~~W-~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s  198 (737)
T KOG1524|consen  137 --------------LRSTVVQNE--ESIRCARW-APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS  198 (737)
T ss_pred             --------------HHHHHhhcC--ceeEEEEE-CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence                          334444334  34999999 78777665543 4567777777666667788999999999999999


Q ss_pred             CeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE--Eeeccccccc
Q 021160          207 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR--ERRYNAADFE  284 (316)
Q Consensus       207 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~--~~~~~~~~~~  284 (316)
                      .++++|++|-..+|||..+..+..-..|.-++.+.+ |.++ ..++.++ -.++|   +...+.-..+  .+++++..++
T Consensus       199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva-~npd-~~~~v~S-~nt~R---~~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVA-FNPE-KDYLLWS-YNTAR---FSSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             cceeecCCceeEEeecccCcccccCChhccceeeee-eccc-cceeeee-eeeee---ecCCCccceEEEEEcCCCceee
Confidence            999999999999999998887777777888887777 6676 3444443 33344   4433322222  7899999999


Q ss_pred             ccCCCCeEEEEec
Q 021160          285 SDEEEGETYLLGF  297 (316)
Q Consensus       285 ~~~~~~~v~~~~~  297 (316)
                      .+...|.+++.-.
T Consensus       273 ~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  273 CGTSTGQLIVAYA  285 (737)
T ss_pred             ccccCceEEEeee
Confidence            9988888876543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=9.8e-15  Score=115.99  Aligned_cols=187  Identities=16%  Similarity=0.310  Sum_probs=145.1

Q ss_pred             ceeeEEEEeeCCC--cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDS--ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~--~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~   77 (316)
                      .|.+++|....+.  ..+......          ..++..+.-++..+.++|+|+..  ..+.+||++..+-+       
T Consensus       124 sG~l~~~~~k~~d~hss~l~~la~----------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi-------  186 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLHSSKLIKLAT----------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI-------  186 (412)
T ss_pred             CCcEEEEeccCCccccccceeeec----------CCceeeeccCCCCCceEecCchhcccceeeeecccceee-------
Confidence            5788999988443  222222221          23678888899888888999998  88999999866411       


Q ss_pred             Cceeccccccc-----CCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           78 PVDTFCPRHLI-----GKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                          |..+.+.     -.-.-+++++.|-+.  ...|++ +.-+++++||.+.+.               +++..|.--.
T Consensus       187 ----w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------RPV~~fd~~E  247 (412)
T KOG3881|consen  187 ----WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------RPVAQFDFLE  247 (412)
T ss_pred             ----eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---------------cceeEecccc
Confidence                1111111     112346778899887  556676 479999999998763               5666776666


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +.  ++++.. .|+++++++|...|.+..||++.++.... +.+..+.|.++..+|..+++|++|-|..+||+|+.+.+
T Consensus       248 ~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  248 NP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             Cc--ceeeee-cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            55  999998 89999999999999999999999998876 78889999999999999999999999999999999865

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.9e-13  Score=105.60  Aligned_cols=187  Identities=9%  Similarity=0.102  Sum_probs=120.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +-.|+++|-....+ ..+...          ....|+|++|-|.+...|++|.. +.|.+|.....-.....  .....+
T Consensus       119 ddvVriy~ksst~p-t~Lks~----------sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~--~~~~s~  184 (445)
T KOG2139|consen  119 DDVVRIYDKSSTCP-TKLKSV----------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN--IRMMST  184 (445)
T ss_pred             CcEEEEeccCCCCC-ceecch----------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc--cccccc
Confidence            45688888766333 333322          24579999999988788888887 55889987633211110  000011


Q ss_pred             ccccccc-CCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           82 FCPRHLI-GKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                      .+...+. .+| .+|+++.|++||..++++  .|..|.|||..++                ..+....-..  ..+.-+.
T Consensus       185 ~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg----------------~~~pL~~~gl--gg~slLk  245 (445)
T KOG2139|consen  185 HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG----------------QKIPLIPKGL--GGFSLLK  245 (445)
T ss_pred             cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC----------------CcccccccCC--CceeeEE
Confidence            1111111 233 789999999999988885  5889999999988                2222221122  2278889


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      | +|++.+|.+++-|+..++|...............+.|+..+|+|.|+.|+-+. .|.-++|.+
T Consensus       246 w-SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl  308 (445)
T KOG2139|consen  246 W-SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL  308 (445)
T ss_pred             E-cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence            8 99999999999999999996443222222223345899999999999855443 244455543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=8.4e-14  Score=123.57  Aligned_cols=267  Identities=9%  Similarity=0.071  Sum_probs=172.7

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      .|+|||-+.++...-|......        ...|+.+.+- .++..++++|+.||.|+||+-.....    ..++-|..+
T Consensus      1087 ~i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw 1154 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAW 1154 (1387)
T ss_pred             eEEEEecccCceeccccCCCCC--------CCccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEee
Confidence            5789999877765555544433        5678999874 34447899999999999998543221    011222222


Q ss_pred             cc-ccccCCCcccEEEEEEccCC-CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           83 CP-RHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        83 ~~-~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      .. .....+..+.-.-+.|.... .++++|.-..|+|||....                .....+....+ ..++++.-.
T Consensus      1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSAD 1217 (1387)
T ss_pred             ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeecccCCC-ccceeeccc
Confidence            11 11111111222446677654 4556667788999999876                34444433222 337777664


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCe---eEEEeecCccc--eEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-CCC--C
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-FPP--L  231 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~--v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-~~~--~  231 (316)
                      ...|+.+++|..||.|++||.+...   .+...+.|...  |..+.+-+.|-- |++|+.||.|++||++... ...  +
T Consensus      1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence            5568999999999999999987543   45666778876  999999987765 9999999999999999843 222  2


Q ss_pred             CCCc--ccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE----------------EeecccccccccCCCCeEE
Q 021160          232 PDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------------ERRYNAADFESDEEEGETY  293 (316)
Q Consensus       232 ~~~~--~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~v~  293 (316)
                      ..|.  +..++....+.....+++|+. +.+++|++...+...+.                .+-|-...++.+..|.+|.
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence            2222  212344446667778889888 99999998754332221                3444445566667777777


Q ss_pred             EEeccCC
Q 021160          294 LLGFSDS  300 (316)
Q Consensus       294 ~~~~~~~  300 (316)
                      ++.....
T Consensus      1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred             EeecCCc
Confidence            7765543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=9.5e-13  Score=102.25  Aligned_cols=179  Identities=14%  Similarity=0.161  Sum_probs=126.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC-CcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~-~~~~~~~~~~~~~~~   81 (316)
                      ..|.|||=...++...+..            ..+|.++.+.++   .|++.- ...|.||.... .+.+.          
T Consensus        75 NkviIWDD~k~~~i~el~f------------~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~----------  128 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF------------NSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLH----------  128 (346)
T ss_pred             ceEEEEecccCcEEEEEEe------------ccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhhee----------
Confidence            5789999444444333332            568999999984   344443 47899999873 33111          


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       +..+.  ......-++.-.....+||. | .-|+|.|-|+....              ......+..|...  |.|++.
T Consensus       129 -~~et~--~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L  189 (346)
T KOG2111|consen  129 -VIETR--SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL  189 (346)
T ss_pred             -eeecc--cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE
Confidence             11111  11122222222222236666 5 47999999997651              0134778899977  999999


Q ss_pred             ecCCCcEEEEeccCCe-EEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          160 FGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~-v~~wd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                       +.+|..+|++|..|+ |+|||..+|+.+..+..  ....|.+++|+|+..+||.+|..|++.|+.++...
T Consensus       190 -n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  190 -NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             -cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence             899999999999997 78999999999998863  23579999999999999999999999999987643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5.3e-14  Score=117.16  Aligned_cols=273  Identities=14%  Similarity=0.148  Sum_probs=182.0

Q ss_pred             ceeeEEEEeeCCCcceEEEecc-------------ccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSS-------------FSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH   68 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~-------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~   68 (316)
                      .+.|+||++...+..+.-....             ..+...+-+|+..-+.|..+|+|..++|+|...-.|++||+....
T Consensus         6 ~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS   85 (703)
T KOG2321|consen    6 VNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS   85 (703)
T ss_pred             cCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence            4578999987655432211100             001122236888899999999997778889999999999998665


Q ss_pred             ccCCCCCCCCceecc--------------cccc-----cCCC-----cccEEEEEEccCC-CeEEEecCCcEEEEEcCCC
Q 021160           69 WYSPISSDTPVDTFC--------------PRHL-----IGKN-----NIHITGLAYSNTS-ELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        69 ~~~~~~~~~~~~~~~--------------~~~~-----~~~~-----~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~  123 (316)
                      +.-+-.....+..|.              .+.+     ...|     ...-..++++.-. .+++.+....|+-++++.+
T Consensus        86 LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG  165 (703)
T KOG2321|consen   86 LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG  165 (703)
T ss_pred             eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccc
Confidence            432211111111111              0000     0001     1123345555433 3666677788999999988


Q ss_pred             CCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec------Ccc--
Q 021160          124 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG------DRH--  195 (316)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------~~~--  195 (316)
                                      ..+..|......  ++++.. ++.+.+|++|+.+|.|-+||.+....+..+..      |.+  
T Consensus       166 ----------------rfL~P~~~~~~~--lN~v~i-n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~  226 (703)
T KOG2321|consen  166 ----------------RFLNPFETDSGE--LNVVSI-NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD  226 (703)
T ss_pred             ----------------cccccccccccc--ceeeee-cCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence                            677777766655  999998 88999999999999999999998776665532      333  


Q ss_pred             ---ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCc--ccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          196 ---VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       196 ---~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                         .|+++.|+.+|-.++.|..+|.+.|||+++.+......|.  -++..+.|...+..-.+.......+++|+-.++..
T Consensus       227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP  306 (703)
T ss_pred             ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence               4999999999888999999999999999998844444443  45666765555544455555678899999998877


Q ss_pred             ceeEEeecccccccccCCCCeEE
Q 021160          271 LAYRERRYNAADFESDEEEGETY  293 (316)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~v~  293 (316)
                      ....+...+...+-.-.+.|-++
T Consensus       307 ~asiEpt~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  307 MASIEPTSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             eeeccccCCcCceeeecCCceEE
Confidence            77665555555554444444443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.5e-13  Score=107.21  Aligned_cols=207  Identities=15%  Similarity=0.195  Sum_probs=139.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEecC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d  112 (316)
                      +..+..++|++.- ..+|++..|-.|++|+-.. +              ++..+.......|+|++|-|.+. .|+.+--
T Consensus        98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss-t--------------~pt~Lks~sQrnvtclawRPlsaselavgCr  161 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-T--------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR  161 (445)
T ss_pred             hcceeeEeechhh-hhhhhhccCcEEEEeccCC-C--------------CCceecchhhcceeEEEeccCCcceeeeeec
Confidence            3457889999976 7899999999999999876 3              34444344567899999999764 6666667


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEEee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~  191 (316)
                      +-|.+|.........   .... .......+.+.... ...|+++.| .+||..+++++. +..|.+||..++..+....
T Consensus       162 ~gIciW~~s~tln~~---r~~~-~~s~~~~qvl~~pg-h~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  162 AGICIWSDSRTLNAN---RNIR-MMSTHHLQVLQDPG-HNPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             ceeEEEEcCcccccc---cccc-cccccchhheeCCC-CceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCcccccc
Confidence            779999876431100   0000 00001222232221 145999999 899999998875 7789999999988776554


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCcee-EEecCCCeEEEE
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSR-ITLTPDVIMHVL  263 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~w  263 (316)
                      -.-+.+.-+.||||+.+|..+.-|+..++|...... .....-.... ++.+.|+++++++ ++++....+.-.
T Consensus       236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgr-vqtacWspcGsfLLf~~sgsp~lysl  308 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGR-VQTACWSPCGSFLLFACSGSPRLYSL  308 (445)
T ss_pred             cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCc-eeeeeecCCCCEEEEEEcCCceEEEE
Confidence            445778889999999999999999999999654432 1111112223 4666688877655 455555544433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=1.8e-15  Score=122.61  Aligned_cols=195  Identities=14%  Similarity=0.176  Sum_probs=167.2

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  115 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  115 (316)
                      .-..+.++.+| ..++.|+..|.|..+|..++++..+            ..    -...|..+.|-...+++|.+....+
T Consensus       131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~E------------i~----v~Etv~Dv~~LHneq~~AVAQK~y~  193 (545)
T KOG1272|consen  131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFE------------IN----VMETVRDVTFLHNEQFFAVAQKKYV  193 (545)
T ss_pred             CCeeeeecCCc-cEEEecCCccceeeeecccceeeee------------ee----hhhhhhhhhhhcchHHHHhhhhceE
Confidence            34678899999 8999999999999999999885422            11    2456888999988889999999999


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  195 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~  195 (316)
                      +|||-..-                 .++.++.+..   +..+.| -|..-+|++++..|.++.-|+.+|+.+..+....+
T Consensus       194 yvYD~~Gt-----------------ElHClk~~~~---v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G  252 (545)
T KOG1272|consen  194 YVYDNNGT-----------------ELHCLKRHIR---VARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG  252 (545)
T ss_pred             EEecCCCc-----------------EEeehhhcCc---hhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence            99997653                 5666665543   888999 78899999999999999999999999999988888


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .+..|+-+|.+..+-+|...|+|.+|.+.... +..+.-|..++..++ ..+.+++++|.+.|..++|||++.-.
T Consensus       253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siA-v~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIA-VDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEE-ECCCCcEEeecccccceeEeeecccc
Confidence            99999999999999999999999999999887 677777888886666 88999999999999999999998754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=9.7e-14  Score=107.74  Aligned_cols=205  Identities=11%  Similarity=0.178  Sum_probs=152.9

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ..+|+|.+|+++. ..+|++.....|.||.....+.-            ...+....|...|+.+.|+|..+.|+++ .|
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d   76 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD   76 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence            4589999999999 89999999999999998866511            2233337899999999999999888885 69


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE----E
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV----R  188 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~----~  188 (316)
                      ..-++|....+             .+.++...+..+...  .+++.| +|.++.+++|+....|.+|-++..+--    +
T Consensus        77 rnayVw~~~~~-------------~~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh  140 (361)
T KOG1523|consen   77 RNAYVWTQPSG-------------GTWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH  140 (361)
T ss_pred             CCccccccCCC-------------CeeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence            99999998433             122444445555543  899999 999999999999999999988743321    1


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-----CCC--------------CCCCCCCcccceeeeecCCCCc
Q 021160          189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-----PTD--------------FPPLPDNAEKIMKANKQGREDH  249 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-----~~~--------------~~~~~~~~~~~~~~~~~~~~~~  249 (316)
                      .-+.+.+.|+++.|+|++-+++.|+.|++.||+..-     ...              +.++......+.... +++.+.
T Consensus       141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~  219 (361)
T KOG1523|consen  141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGN  219 (361)
T ss_pred             hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCC
Confidence            223467889999999999999999999999999742     111              111112233343444 778888


Q ss_pred             eeEEecCCCeEEEEEeccc
Q 021160          250 SRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++-.+.|+++.+-|-...
T Consensus       220 ~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             EeeEecCCCceEEeecCCC
Confidence            8988899999888886554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.61  E-value=1.7e-14  Score=115.16  Aligned_cols=167  Identities=18%  Similarity=0.273  Sum_probs=129.9

Q ss_pred             CcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE
Q 021160           91 NNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  168 (316)
Q Consensus        91 ~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  168 (316)
                      ...++..+.|.+... ++++ +.|..|++|-+........       ..+.+....+..|...  |+.+.| +|+|.+++
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeee
Confidence            356899999999876 8888 4799999999976621110       0112334556778755  999999 99999999


Q ss_pred             EeccCCeEEEEecc--------C--------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC
Q 021160          169 SGSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL  231 (316)
Q Consensus       169 ~~~~dg~v~~wd~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~  231 (316)
                      +|+++|.+.+|-..        +        ......+.+|...|..++|+|++.++++++.|..+++||+..+. ...+
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence            99999999999865        2        12344567899999999999999999999999999999999998 5566


Q ss_pred             CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+|...+...+ |.+.+.++++-+.|...+...+...
T Consensus       162 ~dh~~yvqgva-wDpl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  162 DDHEHYVQGVA-WDPLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             cccccccceee-cchhhhhhhhhccCcccceeeeeee
Confidence            66776664454 8888889999888876666665544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.8e-14  Score=115.55  Aligned_cols=185  Identities=12%  Similarity=0.104  Sum_probs=131.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|++|||+.-+........           .|.+.|.++.|+|++ .+|++-+.| ..+||+.+++.....         
T Consensus       165 dg~lRv~~~Ps~~t~l~e~-----------~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~---------  222 (398)
T KOG0771|consen  165 DGTLRVWEWPSMLTILEEI-----------AHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALAR---------  222 (398)
T ss_pred             cceEEEEecCcchhhhhhH-----------hhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhh---------
Confidence            7899999965443322221           278899999999999 899999998 999999998852211         


Q ss_pred             cccccccCCCcccEEEEEEccCC---C-eEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS---E-LLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~---~-~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                      ..+    .........+.|+.++   . ++++.  .-+.|..|++......          +-.+..+....+   +.|.
T Consensus       223 ~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~----------~~l~~~~~~~~~---~siS  285 (398)
T KOG0771|consen  223 KTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS----------NFLRLRKKIKRF---KSIS  285 (398)
T ss_pred             cCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc----------cccchhhhhhcc---Ccce
Confidence            111    2223455667787776   3 33432  3566777776543110          000111222222   2399


Q ss_pred             eEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          156 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      +++. +++|++++.|+.+|.|-+++..+-+.++..+ .|...|+.+.|+|+.+++++.+.|....+..+...
T Consensus       286 sl~V-S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  286 SLAV-SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             eEEE-cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            9998 9999999999999999999999888877664 69999999999999999999999999999887653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.3e-13  Score=122.45  Aligned_cols=235  Identities=13%  Similarity=0.125  Sum_probs=155.4

Q ss_pred             ceeeEEEEeeCC--CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.||||+-...  +..++++....-..-. ++-.+.=.-+.|.... .+|++++.-..|+|||.....+          
T Consensus      1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~-~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~---------- 1199 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQL-PGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQV---------- 1199 (1387)
T ss_pred             CceEEEecccccccCCceeEEeeccccccC-ccCCCCCeeeehhhhC-CeEEecCCeeEEEEEeccccee----------
Confidence            699999997654  2333443322111000 1111222456788776 4566666679999999986652          


Q ss_pred             eecccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                          ...+..+....++++.-+- .|+++++| .||.|++||.+...             ....+..++.|.....|..+
T Consensus      1200 ----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------------~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1200 ----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-------------PDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred             ----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC-------------ccccceeecccCCcccceeE
Confidence                2223233455566665543 35777776 89999999998752             00245667778766668888


Q ss_pred             EEecCCCc-EEEEeccCCeEEEEeccCCeeEE--EeecCc--c-ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160          158 NFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR--LMVGDR--H-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  231 (316)
Q Consensus       158 ~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~--~-~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~  231 (316)
                      .+ .+.|- .|++|+.+|.|++||++......  .+..|.  + ..+++..|++.+.+|+|+. +.|+||++.+.++..+
T Consensus      1263 sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1263 SL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred             Ee-ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccc
Confidence            88 55444 59999999999999998742222  222333  3 5899999999999999998 9999999998775554


Q ss_pred             CCCc-------ccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          232 PDNA-------EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       232 ~~~~-------~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ..+.       ..+ .+..+++-.-++++|+.|..|.++.....
T Consensus      1341 k~n~~F~~q~~gs~-scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSV-SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ccCcccccCcCCCc-ceeeecchhHhhhhccCCceEEEeecCCc
Confidence            4332       122 33336676678889999999999975544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.60  E-value=1.4e-14  Score=109.53  Aligned_cols=170  Identities=12%  Similarity=0.138  Sum_probs=120.3

Q ss_pred             ccceEEEEECC-CCCc-EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           34 SIRLNAIVIDP-RNPN-YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        34 ~~~v~~~~~~~-~~~~-~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      .+.+.+..+.. .+.. ++++|-++|.+.+||+.++..+-......     ....-...|..++.++.|.+.-..=++ +
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas~~~rGisgg  224 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYASSCDRGISGG  224 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeechhhcCCcCCC
Confidence            45677766433 2323 45666789999999999874211110000     111112568899999999875443333 4


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .+..+..|.++...+.            ........-...  .+..+.. -||++.+|+++.|+.+++|..++.+++..+
T Consensus       225 a~dkl~~~Sl~~s~gs------------lq~~~e~~lknp--Gv~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAVL  289 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGS------------LQIRKEITLKNP--GVSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAVL  289 (323)
T ss_pred             ccccceeeeeccccCc------------ccccceEEecCC--CccceEE-ccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence            5778888888654111            011111221222  2778888 899999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      +-|...|++++|+|+.+.+|.++.|+.|.+|++
T Consensus       290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7.7e-13  Score=114.05  Aligned_cols=211  Identities=9%  Similarity=0.035  Sum_probs=132.5

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---cCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .|.+||........+..            +...+.+.+|+|+| +.|+..+   .+..+.+|++.+++..          
T Consensus       180 ~l~~~d~dg~~~~~lt~------------~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~----------  236 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHR------------SPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR----------  236 (429)
T ss_pred             eEEEEcCCCCCCEEeec------------CCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeE----------
Confidence            46677765544433221            35578999999999 6666543   3457999999877521          


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe--cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                        ..    .........++|+|+|+.|+..  .++  .|++||+.++                .. ..+..+...  +..
T Consensus       237 --~l----~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg----------------~~-~~lt~~~~~--~~~  291 (429)
T PRK03629        237 --QV----ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----------------QI-RQVTDGRSN--NTE  291 (429)
T ss_pred             --Ec----cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC----------------CE-EEccCCCCC--cCc
Confidence              01    1112234468999999866642  344  5899999876                23 333333322  678


Q ss_pred             EEEecCCCcEEEEeccC-C--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCC
Q 021160          157 VNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPP  230 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~  230 (316)
                      ..| +|+|+.|+..+.+ +  .|+++++.+++. ..+..+........|+|++++|+..+.+   ..|.+||+.++....
T Consensus       292 ~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~  369 (429)
T PRK03629        292 PTW-FPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  369 (429)
T ss_pred             eEE-CCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            888 9999988877654 3  455567766654 3443344455678999999998776543   358889998877544


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCe---EEEEEec
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVI---MHVLRLQ  266 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~---~~~w~~~  266 (316)
                      +.... .. ....|+++++.++..+.++.   +.++++.
T Consensus       370 Lt~~~-~~-~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        370 LTDTF-LD-ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             eCCCC-CC-CCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            44221 11 12337889998888777654   4555553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=3e-14  Score=119.10  Aligned_cols=154  Identities=19%  Similarity=0.336  Sum_probs=122.9

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEecC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d  112 (316)
                      .+.|.++.|+|.. .++++++. ..|++||+....+              .+.+ ......|..++.+|.|. +++++.|
T Consensus       566 kG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqel--------------vKkL-~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  566 KGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQEL--------------VKKL-LTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             CCceeEEEecCCC-ceEEEEec-cceEEEehhHHHH--------------HHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence            5679999999998 56666655 7899999987652              2333 22356789999999996 5566789


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc------CC--
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG--  184 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~------~~--  184 (316)
                      +.++.+|+.-..               ++.+.+..|...  +++|+| ++.-.++++|+.||++.++.-.      ..  
T Consensus       629 ~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl  690 (733)
T KOG0650|consen  629 KKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL  690 (733)
T ss_pred             CeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence            999999998764               677888889866  999999 8888999999999999988621      11  


Q ss_pred             -eeEEEeecCccc----eEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160          185 -KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       185 -~~~~~~~~~~~~----v~~~~~~p~~~~l~s~~~d~~i~iwd  222 (316)
                       -++..+.+|...    |....|||...+|.+++.||+|++|.
T Consensus       691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence             235667788754    89999999999999999999999983

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.3e-12  Score=113.30  Aligned_cols=183  Identities=10%  Similarity=0.062  Sum_probs=120.1

Q ss_pred             CccceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-  108 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  108 (316)
                      |...+.+.+|+|+| +.|+..+.   +..|.+||+.+++..               .+ ..+...+...+|+|+|+.|+ 
T Consensus       200 ~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~  262 (435)
T PRK05137        200 GSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVM  262 (435)
T ss_pred             CCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEE
Confidence            56789999999999 66666543   468999999877521               11 23345667889999998554 


Q ss_pred             Ee-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--CeEEEEecc
Q 021160          109 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK  182 (316)
Q Consensus       109 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~~wd~~  182 (316)
                      +. .++  .|++||+.++                 ....+..+...  .....| +|+|+.|+..+. +  ..|+++|+.
T Consensus       263 ~~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             EEecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECC
Confidence            43 344  4788888776                 23444444432  567888 999999887764 3  368888987


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      .++. ..+..+...+....|+|+++.|+..+.+   ..|.+||+.++....+... ... ....|+++++.++..+
T Consensus       323 g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~~-~~p~~spDG~~i~~~~  395 (435)
T PRK05137        323 GSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FLV-EGPTWAPNGRVIMFFR  395 (435)
T ss_pred             CCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CCC-CCCeECCCCCEEEEEE
Confidence            6654 3444344556778999999998776543   3688889866554333321 112 2233777777765543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=8.8e-13  Score=114.15  Aligned_cols=211  Identities=9%  Similarity=0.034  Sum_probs=131.2

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCce
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .|.+||........+ ..           |...+.+.+|+|++ +.|+..+.   +..|.+||+.+++..          
T Consensus       185 ~l~i~D~~g~~~~~l-t~-----------~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~----------  241 (433)
T PRK04922        185 ALQVADSDGYNPQTI-LR-----------SAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE----------  241 (433)
T ss_pred             EEEEECCCCCCceEe-ec-----------CCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE----------
Confidence            577787754433222 21           45678999999999 67776653   346999999877521          


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEE-E-ecCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLI-S-YNDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                           .+ ........+++|+|+|+.++ + ..++  .|++||+.++                . ...+..+...  ...
T Consensus       242 -----~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------------~-~~~lt~~~~~--~~~  296 (433)
T PRK04922        242 -----LV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------------Q-LTRLTNHFGI--DTE  296 (433)
T ss_pred             -----Ee-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------------C-eEECccCCCC--ccc
Confidence                 11 11223345789999998554 3 3344  6999999876                2 3334444322  567


Q ss_pred             EEEecCCCcEEEEecc-CC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCC
Q 021160          157 VNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPP  230 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~  230 (316)
                      .+| +|+|++|+..+. +|  .++++++.+++.. .+..+......++|+|++++|+..+.++   .|.+||+.++....
T Consensus       297 ~~~-spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~  374 (433)
T PRK04922        297 PTW-APDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT  374 (433)
T ss_pred             eEE-CCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence            788 999998887764 44  4777777766643 3322333445689999999987665333   69999998877544


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCC---CeEEEEEec
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQ  266 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d---~~~~~w~~~  266 (316)
                      +... ...... .|+++++.++..+.+   +.+.++++.
T Consensus       375 Lt~~-~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        375 LTPG-SLDESP-SFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CCCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence            4322 122222 377888776655442   345555543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.57  E-value=1.3e-14  Score=125.56  Aligned_cols=232  Identities=16%  Similarity=0.299  Sum_probs=152.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      -.|+||...+..+....+           ||.+.|+.++.+..+ ..+++++.|..|++|.+.++.              
T Consensus       212 ~lvKiwS~et~~~lAs~r-----------Ghs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--------------  265 (1113)
T KOG0644|consen  212 RLVKIWSMETARCLASCR-----------GHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--------------  265 (1113)
T ss_pred             ceeeeeeccchhhhccCC-----------CCccccchhccchhh-hhhhhcccCceEEEEecCCCc--------------
Confidence            357888866655543332           689999999999988 899999999999999999885              


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCC---CCCCccCCccccccC----CCccee-eCCcCC---
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL---GPSPLSLSPEDLQKR----EEPQVY-SGHRNS---  151 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~----~~~~~~-~~~~~~---  151 (316)
                       +..++.+|++.|++++|+|--   .++.||++++||.+-..   .|.+..+.-.++-..    .....+ .+....   
T Consensus       266 -pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  266 -PVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             -hHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence             334448999999999999964   45689999999998211   111111111100000    000000 000000   


Q ss_pred             -ceeeeEEEecCC-----------CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcE
Q 021160          152 -QTVKGVNFFGPN-----------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTV  218 (316)
Q Consensus       152 -~~i~~~~~~~~~-----------~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i  218 (316)
                       -.+.+++| ...           ..+.+++-.+-.+++|++.+|++.+.+.+|...+..+.+||-+.. ..+++.||..
T Consensus       342 n~e~~~l~~-~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  342 NHEFEQLAW-RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             cchhhHhhh-hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence             00112222 111           123344445667889999999999999999999999999998776 5688999999


Q ss_pred             EEecCCCCC-CCC-CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          219 KLWAPMPTD-FPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       219 ~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      .|||+..+. ++. ..+|.. +... .+++++..++....-|.+.+.....
T Consensus       421 ~iwdi~eg~pik~y~~gh~k-l~d~-kFSqdgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  421 IIWDIWEGIPIKHYFIGHGK-LVDG-KFSQDGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             EeeecccCCcceeeecccce-eecc-ccCCCCceEecCCCCCceEEeccCC
Confidence            999998775 222 223332 3333 3788887777777778888776543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=5.1e-15  Score=120.07  Aligned_cols=207  Identities=14%  Similarity=0.205  Sum_probs=156.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      |+|--+|..+.+....+..            ...|.++.|-.+. ++||++ ....+.|||-..-++.            
T Consensus       151 GHlAa~Dw~t~~L~~Ei~v------------~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~GtElH------------  204 (545)
T KOG1272|consen  151 GHLAAFDWVTKKLHFEINV------------METVRDVTFLHNE-QFFAVA-QKKYVYVYDNNGTELH------------  204 (545)
T ss_pred             cceeeeecccceeeeeeeh------------hhhhhhhhhhcch-HHHHhh-hhceEEEecCCCcEEe------------
Confidence            6677777777665444433            3468889998776 667665 5578999997644321            


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                      |++.     ...|..+.|-|..-+|+++ ..|.+..-|+..+                +.+..+......  +..++- +
T Consensus       205 Clk~-----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-N  260 (545)
T KOG1272|consen  205 CLKR-----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-N  260 (545)
T ss_pred             ehhh-----cCchhhhcccchhheeeecccCCceEEEeechh----------------hhhHHHHccCCc--cchhhc-C
Confidence            3222     3468889999988788885 6899999999998                677777665544  677776 8


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-Ccccce
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIM  239 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~  239 (316)
                      |-+..+-+|...|+|.+|.....+++..+..|.++|.++++.++|.++||.+.|..++|||++... +.+... +...- 
T Consensus       261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~-  339 (545)
T KOG1272|consen  261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASN-  339 (545)
T ss_pred             CccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccc-
Confidence            889999999999999999999999988888999999999999999999999999999999999876 443332 11111 


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEE
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                          .+....-+++.+...-+.+|.
T Consensus       340 ----ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  340 ----LSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             ----cccccccceeeecCCeeeeeh
Confidence                222334567777777888995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=4e-12  Score=106.45  Aligned_cols=205  Identities=11%  Similarity=0.132  Sum_probs=125.0

Q ss_pred             ceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-Ee-cC
Q 021160           36 RLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-ND  112 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d  112 (316)
                      ....++|+|++ +++++++ .++.|.+|++.+.....     ..+.     .. . +......++++|++++++ +. .+
T Consensus        81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~-----~~~~-----~~-~-~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPV-----APIQ-----II-E-GLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCC-----Ccee-----ec-c-CCCcccEeEeCCCCCEEEEeeCCC
Confidence            46789999999 6666654 58999999997432100     0011     01 1 123456788999998664 44 58


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccC--Ce--eE
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK--LV  187 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~--~~--~~  187 (316)
                      +.|.+||+.+....          .. ........... .....+.| +|++++++++.. ++.|.+|++..  ++  .+
T Consensus       148 ~~v~v~d~~~~g~l----------~~-~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        148 DRIRLFTLSDDGHL----------VA-QEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             CEEEEEEECCCCcc----------cc-cCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence            99999999763100          00 00001111111 22677888 899999988876 99999999973  32  33


Q ss_pred             EEeecC------ccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC-CCCCCCCc---ccceeeeecCCCCceeEEec-
Q 021160          188 RLMVGD------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNA---EKIMKANKQGREDHSRITLT-  255 (316)
Q Consensus       188 ~~~~~~------~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~s~~-  255 (316)
                      ..+..+      ......+.++|++++++++. .++.|.+|++.... ...+.++.   .....+ .++++++++++.. 
T Consensus       215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~-~~~~dg~~l~va~~  293 (330)
T PRK11028        215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF-NIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce-EECCCCCEEEEEEc
Confidence            333221      11234688999999987775 47899999985432 11111111   111122 3667777777555 


Q ss_pred             CCCeEEEEEecc
Q 021160          256 PDVIMHVLRLQR  267 (316)
Q Consensus       256 ~d~~~~~w~~~~  267 (316)
                      .++.+.+|++..
T Consensus       294 ~~~~v~v~~~~~  305 (330)
T PRK11028        294 KSHHISVYEIDG  305 (330)
T ss_pred             cCCcEEEEEEcC
Confidence            489999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.6e-13  Score=115.38  Aligned_cols=236  Identities=15%  Similarity=0.247  Sum_probs=165.7

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC--cEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|.|+.+.+..+...+.           +|..++..+.+.|...  .++.+++.||.|++||...+.+........++.
T Consensus        37 ~~V~VyS~~Tg~~i~~l~-----------~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~  105 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLE-----------DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVH  105 (792)
T ss_pred             CEEEEEecchHhhhhhcc-----------cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCcee
Confidence            467777777776655333           4788999999998775  467789999999999999888765443222221


Q ss_pred             eccc--c------------------c------------------------ccCCCcccEEEEEEccCCCeEEEecCCcEE
Q 021160           81 TFCP--R------------------H------------------------LIGKNNIHITGLAYSNTSELLISYNDELVY  116 (316)
Q Consensus        81 ~~~~--~------------------~------------------------~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~  116 (316)
                      ....  .                  .                        ....|.. -.++.+++.|++....-+..+.
T Consensus       106 ~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~  184 (792)
T KOG1963|consen  106 ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIH  184 (792)
T ss_pred             EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEE
Confidence            1100  0                  0                        0001111 2456666767666666677788


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----CeeEEEeec
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVG  192 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~----~~~~~~~~~  192 (316)
                      +|+.....            ........-..|.-.  +++.++ +|+++++++|..||.|.+|.--.    ......+.=
T Consensus       185 ~~~v~~~~------------~~~~~~~~~~~Htf~--~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW  249 (792)
T KOG1963|consen  185 IYFVPKHT------------KHTSSRDITVHHTFN--ITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW  249 (792)
T ss_pred             EEEecccc------------eeeccchhhhhhccc--ceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence            88876641            000001111234433  789998 99999999999999999997432    223455666


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      |...|++++|+++|.+|++|+..+.+-+|.+.+++.+-|+--..++..+. +++++.+......|+.+.+....
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~-vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIV-VSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEE-EcCCCCeEEEEecCceEEEEecc
Confidence            88899999999999999999999999999999998666666666666666 77999999989999999999873

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.54  E-value=1.5e-12  Score=101.24  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=125.8

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeC-cCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI-RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .|...|+.++|+|.. +.|++++.|..-++|.. ..+++             .+..++..++...+++.|+|.++.++.+
T Consensus        53 ~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~W-------------kptlvLlRiNrAAt~V~WsP~enkFAVg  118 (361)
T KOG1523|consen   53 EHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTW-------------KPTLVLLRINRAATCVKWSPKENKFAVG  118 (361)
T ss_pred             hhCcceeEEeecCCC-CceeEccCCCCccccccCCCCee-------------ccceeEEEeccceeeEeecCcCceEEec
Confidence            488999999999998 89999999999999998 44443             2222335678899999999999877775


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-----C
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-----G  183 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-----~  183 (316)
                       .-..|.+|=++...             ..-.- +.-+.+.  ..|++++| .|++-++++|+.|+.+++|...     .
T Consensus       119 Sgar~isVcy~E~EN-------------dWWVsKhikkPir--Stv~sldW-hpnnVLlaaGs~D~k~rVfSayIK~Vde  182 (361)
T KOG1523|consen  119 SGARLISVCYYEQEN-------------DWWVSKHIKKPIR--STVTSLDW-HPNNVLLAAGSTDGKCRVFSAYIKGVDE  182 (361)
T ss_pred             cCccEEEEEEEeccc-------------ceehhhhhCCccc--cceeeeec-cCCcceecccccCcceeEEEEeeecccc
Confidence             57778888776541             00000 1112233  34999999 8999999999999999999832     1


Q ss_pred             -------------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          184 -------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       184 -------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                                   |+++.++....+.+..+.|+|+|..|+-.+.|..+.+=|.....
T Consensus       183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                         23334443455789999999999999999999999999877653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=8.1e-13  Score=100.94  Aligned_cols=116  Identities=16%  Similarity=0.324  Sum_probs=84.5

Q ss_pred             ccceEEEEECCCCCcEEEE--EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160           34 SIRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~--g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  111 (316)
                      .++|.+++|+|++ +.||+  |..+..|.+||++...               ...+   +...+..+.|+|+|++++.++
T Consensus        59 ~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~~~~---------------i~~~---~~~~~n~i~wsP~G~~l~~~g  119 (194)
T PF08662_consen   59 EGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVKGKK---------------IFSF---GTQPRNTISWSPDGRFLVLAG  119 (194)
T ss_pred             CCceEEEEECcCC-CEEEEEEccCCcccEEEcCcccE---------------eEee---cCCCceEEEECCCCCEEEEEE
Confidence            4579999999999 55443  4467899999997322               1122   245677899999999777742


Q ss_pred             ----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc------CCeEEEEec
Q 021160          112 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKK  181 (316)
Q Consensus       112 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~~wd~  181 (316)
                          .|.|.+||.++.                +.+..+. |.   .+..++| +|+|+++++++.      |..++||+.
T Consensus       120 ~~n~~G~l~~wd~~~~----------------~~i~~~~-~~---~~t~~~W-sPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  120 FGNLNGDLEFWDVRKK----------------KKISTFE-HS---DATDVEW-SPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             ccCCCcEEEEEECCCC----------------EEeeccc-cC---cEEEEEE-cCCCCEEEEEEeccceeccccEEEEEe
Confidence                577999999876                4444433 22   2789999 999999999874      778999998


Q ss_pred             cCCeeEEEe
Q 021160          182 KGGKLVRLM  190 (316)
Q Consensus       182 ~~~~~~~~~  190 (316)
                      . |+.+...
T Consensus       179 ~-G~~l~~~  186 (194)
T PF08662_consen  179 Q-GRLLYKK  186 (194)
T ss_pred             c-CeEeEec
Confidence            5 7666543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.7e-13  Score=109.38  Aligned_cols=180  Identities=14%  Similarity=0.177  Sum_probs=134.5

Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                      ..+|.+.+ .+|.+.|.++.|+.++++|+++ .|..+++|+++..-          .-++.+++.. .+|.....|.|++
T Consensus        45 R~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~----------~~k~~KPI~~-~~~~H~SNIF~L~  112 (609)
T KOG4227|consen   45 RPFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM----------VRKTPKPIGV-MEHPHRSNIFSLE  112 (609)
T ss_pred             cchhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHH----------hhcCCCCcee-ccCccccceEEEE
Confidence            34455555 7899999999999999999996 68899999986530          0001134433 3344334499999


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CC--CCCC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP--PLPD  233 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~  233 (316)
                      | ...+.++++|..+++|.+.|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+... ..  .++.
T Consensus       113 F-~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A  191 (609)
T KOG4227|consen  113 F-DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA  191 (609)
T ss_pred             E-ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence            9 78889999999999999999999998877642  23589999999999999999999999999998765 11  1222


Q ss_pred             C-cccceeeeecCC-CCceeEEecCCCeEEEEEecccCccee
Q 021160          234 N-AEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAY  273 (316)
Q Consensus       234 ~-~~~~~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~~~  273 (316)
                      . ....+... +.+ ++.++++.+..+-+.+||.+..+.+++
T Consensus       192 N~~~~F~t~~-F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~  232 (609)
T KOG4227|consen  192 NSGKNFYTAE-FHPETPALILVNSETGGPNVFDRRMQARPVY  232 (609)
T ss_pred             CCCccceeee-ecCCCceeEEeccccCCCCceeeccccchHH
Confidence            2 23334444 555 678888999999999999887655544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.53  E-value=9.2e-13  Score=118.75  Aligned_cols=230  Identities=12%  Similarity=0.128  Sum_probs=146.7

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  111 (316)
                      |+..|..++.++....+|++|+.||+|++|+.+.-...        ...+............+.++...+.+..+|. +.
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            88889999988766589999999999999999754310        0111111111223567888999888886666 58


Q ss_pred             CCcEEEEEcCCCCCCCC--c-----------------------------------cCCccccccCCCcceeeCCcCCcee
Q 021160          112 DELVYLFEKNMGLGPSP--L-----------------------------------SLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~--~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                      ||.|.+.+++.......  .                                   .+-.+|.........++.....+.|
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            99999999876210000  0                                   0011111111111222222222348


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCC---eEEEE-e-CCCcEEEecCCCCCC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---MFATC-G-IEKTVKLWAPMPTDF  228 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~---~l~s~-~-~d~~i~iwd~~~~~~  228 (316)
                      ++++. +|.+.++++|+..|.+.+||++-+.++.... .+..++..+..+|..+   ..+++ + ..+.|.+|++.++..
T Consensus      1199 TSi~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eEEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            99998 9999999999999999999999888877664 3457888888887544   44444 3 567899999987752


Q ss_pred             CC-CCCC-cccce-----------------eeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          229 PP-LPDN-AEKIM-----------------KANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       229 ~~-~~~~-~~~~~-----------------~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ++ +... ..+.+                 ........+..+++++.|..|+.||.......
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            21 1100 00000                 01111223567889999999999998776554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.1e-12  Score=113.42  Aligned_cols=189  Identities=12%  Similarity=0.051  Sum_probs=120.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-ecCCcEEEE--eCcCCcccCCCCCCCCce
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVY--DIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-~~dg~v~~w--d~~~~~~~~~~~~~~~~~   80 (316)
                      .|++||+.+.+...+...            .+...+++|+|+| +.|+.+ +.+|.+.||  |+.+++            
T Consensus       229 ~i~i~dl~tg~~~~l~~~------------~g~~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~------------  283 (429)
T PRK01742        229 QLVVHDLRSGARKVVASF------------RGHNGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT------------  283 (429)
T ss_pred             EEEEEeCCCCceEEEecC------------CCccCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC------------
Confidence            688999977654333211            1223468999999 666655 568876666  554443            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                         ...+ ..+...+....|+|+|+.|+. + .++...||+++...               .....+ .+..    ....
T Consensus       284 ---~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~  339 (429)
T PRK01742        284 ---PSQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG---------------GGASLV-GGRG----YSAQ  339 (429)
T ss_pred             ---eEee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC---------------CCeEEe-cCCC----CCcc
Confidence               1112 334556778999999986554 4 46788888775431               112222 2221    3466


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC---CCCCCCCCCCCc
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNA  235 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~  235 (316)
                      | +|+|++|+..+.++ +.+||+.+++.......+  ....+.|+|++++|+.++.++.+.+|.+   .......+..+.
T Consensus       340 ~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        340 I-SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             C-CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence            7 99999998887765 556999888754332222  2356789999999999998998887764   344466666666


Q ss_pred             ccceeeeecCC
Q 021160          236 EKIMKANKQGR  246 (316)
Q Consensus       236 ~~~~~~~~~~~  246 (316)
                      ..+...+ |++
T Consensus       416 g~~~~p~-wsp  425 (429)
T PRK01742        416 GQVKFPA-WSP  425 (429)
T ss_pred             CCCCCcc-cCC
Confidence            5554444 443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=5.7e-12  Score=98.02  Aligned_cols=157  Identities=11%  Similarity=0.118  Sum_probs=121.5

Q ss_pred             cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE-e
Q 021160           92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-G  170 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~  170 (316)
                      ..+|.++.+.++  .++....+.|++|......               +.++.+....+++.+.+++- ..+..+|+. |
T Consensus        94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~---------------k~l~~~et~~NPkGlC~~~~-~~~k~~LafPg  155 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP---------------KLLHVIETRSNPKGLCSLCP-TSNKSLLAFPG  155 (346)
T ss_pred             ccceeeEEEcCC--eEEEEecCeEEEEEcCCCh---------------hheeeeecccCCCceEeecC-CCCceEEEcCC
Confidence            567889988765  6677778999999987431               56666666665555666653 344445544 4


Q ss_pred             ccCCeEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEecCCCCC-CCCCCC--Ccccceeeeec
Q 021160          171 SDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPD--NAEKIMKANKQ  244 (316)
Q Consensus       171 ~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~-i~iwd~~~~~-~~~~~~--~~~~~~~~~~~  244 (316)
                      -.-|.|.+-|+...+.  ...+.+|.+.|.+++.+.+|..+||+|..|+ |||||..++. +.+++.  ....++.++ +
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia-F  234 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA-F  234 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE-e
Confidence            5679999999876554  4678899999999999999999999999997 7999999987 666653  233455666 9


Q ss_pred             CCCCceeEEecCCCeEEEEEecc
Q 021160          245 GREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       245 ~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +++..+++..|..|+++++.++.
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999999875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=3.9e-12  Score=99.44  Aligned_cols=234  Identities=13%  Similarity=0.041  Sum_probs=141.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.|++|++...+-...+..           ...++.+++|+|+|..++.+...+-.|.+|.+.+.+....         
T Consensus        70 ~~~vqvwsl~Qpew~ckIde-----------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---------  129 (447)
T KOG4497|consen   70 DPKVQVWSLVQPEWYCKIDE-----------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---------  129 (447)
T ss_pred             cceEEEEEeecceeEEEecc-----------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---------
Confidence            46899999987664333332           2568999999999966777888899999999987763210         


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEec--CCc--EE-----------EEEcCCCC------CCCCccCCccccccCC
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYN--DEL--VY-----------LFEKNMGL------GPSPLSLSPEDLQKRE  140 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~~--i~-----------iwd~~~~~------~~~~~~~~~~~~~~~~  140 (316)
                             ..-+..+..++|+|+|++.+...  |..  +.           -+++++..      .|....+.+++..-..
T Consensus       130 -------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley  202 (447)
T KOG4497|consen  130 -------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY  202 (447)
T ss_pred             -------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence                   11123346677777777655432  221  11           11111110      1111111111100001


Q ss_pred             CcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--------------------------------
Q 021160          141 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--------------------------------  188 (316)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--------------------------------  188 (316)
                      .+..+  +.+ -.+..++| +|.+++|+.|+.|+.+++.+--+-+...                                
T Consensus       203 kv~aY--e~~-lG~k~v~w-sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs  278 (447)
T KOG4497|consen  203 KVYAY--ERG-LGLKFVEW-SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS  278 (447)
T ss_pred             eeeee--eec-cceeEEEe-ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence            11111  111 12888998 9999999999999999887633222111                                


Q ss_pred             ----------------------------Eee------cCccceEEEEEcCCCCeEEEEeC--CCcEEEecCCCCCCCCCC
Q 021160          189 ----------------------------LMV------GDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPMPTDFPPLP  232 (316)
Q Consensus       189 ----------------------------~~~------~~~~~v~~~~~~p~~~~l~s~~~--d~~i~iwd~~~~~~~~~~  232 (316)
                                                  .++      .....+--++|++|..+++|-..  -..+-+||++..++....
T Consensus       279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL  358 (447)
T KOG4497|consen  279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL  358 (447)
T ss_pred             cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence                                        011      11234667999999999988753  246899999998876666


Q ss_pred             CCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          233 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ....++.... |.+....++.+.....+.+|....
T Consensus       359 iQk~piraf~-WdP~~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  359 IQKHPIRAFE-WDPGRPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             hhccceeEEE-eCCCCceEEEEcCCceEEEEcCCC
Confidence            5666665555 777666666666667788897543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=1.3e-12  Score=115.86  Aligned_cols=193  Identities=16%  Similarity=0.133  Sum_probs=146.6

Q ss_pred             EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEE---EEEEccCCCeEEEe-cCCcE
Q 021160           40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT---GLAYSNTSELLISY-NDELV  115 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~l~s~-~d~~i  115 (316)
                      ..+.-.+ ..++.++.+..+.+||.........+.              ........   -+-++++.-+++++ .-+.|
T Consensus        93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~--------------~~er~~l~~~~~~g~s~~~~~i~~gsv~~~i  157 (967)
T KOG0974|consen   93 AKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQ--------------SDERCTLYSSLIIGDSAEELYIASGSVFGEI  157 (967)
T ss_pred             cchhhhc-ceEEEEEcCceEEEEecccCceehhcC--------------CCceEEEEeEEEEeccCcEEEEEeccccccE
Confidence            3344445 678888888999999988665321111              11111111   12233333366775 58999


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE-EeecCc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDR  194 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~-~~~~~~  194 (316)
                      .+|+...-                +....+.+|.+.  +.++.+ +.+|.++++.|+|..+++|++.+.+... ...+|+
T Consensus       158 ivW~~~~d----------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  158 IVWKPHED----------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EEEecccc----------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            99998733                233368899977  999999 9999999999999999999999988766 667899


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+|..++|+|+  .++|+++|.+.++|+.....+..+.+|...-......+.+....+|+..|+.+++|++..+
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999999998  8999999999999988887777888887766555557778889999999999999998654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.1e-12  Score=109.62  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=117.5

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEE-EEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA-VGGSDE--YARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~-~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .|.+||+.+.+...+...            .+.+.+.+|+|+| +.|+ +.+.+|  .|.+||+.+++..          
T Consensus       224 ~i~i~dl~~G~~~~l~~~------------~~~~~~~~~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~~----------  280 (429)
T PRK03629        224 ALVIQTLANGAVRQVASF------------PRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR----------  280 (429)
T ss_pred             EEEEEECCCCCeEEccCC------------CCCcCCeEECCCC-CEEEEEEcCCCCcEEEEEECCCCCEE----------
Confidence            567777766544332211            2234568999999 5555 445555  4888999877521          


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ec-CCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                           .+ ..+...+....|+|+|+.|+. +. ++.  |+++|+.++                 ....+......  ...
T Consensus       281 -----~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~  335 (429)
T PRK03629        281 -----QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-----------------APQRITWEGSQ--NQD  335 (429)
T ss_pred             -----Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-----------------CeEEeecCCCC--ccC
Confidence                 11 222345678899999996665 33 344  555566554                 22333323222  556


Q ss_pred             EEEecCCCcEEEEeccC---CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCc---EEEecCCCCCCCC
Q 021160          157 VNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPP  230 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~---i~iwd~~~~~~~~  230 (316)
                      ..| +|+|++|+..+.+   ..|++||+.+++.. .+... .......|+|||+.|+.++.++.   +.++++.......
T Consensus       336 ~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~  412 (429)
T PRK03629        336 ADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  412 (429)
T ss_pred             EEE-CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE
Confidence            778 9999998876543   35889999887643 33321 22346789999999988887764   7788887766666


Q ss_pred             CCCCcccceeee
Q 021160          231 LPDNAEKIMKAN  242 (316)
Q Consensus       231 ~~~~~~~~~~~~  242 (316)
                      +..+...+....
T Consensus       413 l~~~~~~~~~p~  424 (429)
T PRK03629        413 LPATDGQVKFPA  424 (429)
T ss_pred             CccCCCCcCCcc
Confidence            766655554444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=7.3e-12  Score=108.12  Aligned_cols=185  Identities=11%  Similarity=0.055  Sum_probs=114.9

Q ss_pred             CccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-  108 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  108 (316)
                      +...+.+.+|+|++ +.|+..+.+   ..|.+||+.+++..               .+ ......+...+|+|+|+.|+ 
T Consensus       194 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~  256 (427)
T PRK02889        194 SPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR---------------VV-ANFKGSNSAPAWSPDGRTLAV  256 (427)
T ss_pred             CCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence            46678999999999 677766532   45999999877521               11 11233456889999998665 


Q ss_pred             E-ecCCcEEEEE--cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEe--cc
Q 021160          109 S-YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWK--KK  182 (316)
Q Consensus       109 s-~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd--~~  182 (316)
                      + ..++...||.  +..+                 ..+.+..+...  .....| +|+|+.|+..+. +|...+|.  +.
T Consensus       257 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        257 ALSRDGNSQIYTVNADGS-----------------GLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             EEccCCCceEEEEECCCC-----------------CcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECC
Confidence            3 3567655555  4433                 23344433322  556778 999998886654 45555555  44


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      +++. ..+..+.......+|+|+|++|+..+.++   .|.+||+.++....+.... .. ....|+++++.++..+.+
T Consensus       317 ~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~-~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        317 GGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RD-ESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             CCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-Cc-cCceECCCCCEEEEEEec
Confidence            4443 22222223344678999999988776554   5999999887744443221 11 223477787777665544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=2.5e-11  Score=105.04  Aligned_cols=185  Identities=12%  Similarity=0.068  Sum_probs=119.7

Q ss_pred             CccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-  108 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  108 (316)
                      +...+.+.+|+|++ ++++.+..+   ..|++||+.+++..               .+ ..+...+.+++|+|+|+.|+ 
T Consensus       188 ~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       188 SREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             CCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence            34568889999999 777766543   47999999877521               11 22334556789999998554 


Q ss_pred             Ee-cC--CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-C--eEEEEecc
Q 021160          109 SY-ND--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKK  182 (316)
Q Consensus       109 s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~~wd~~  182 (316)
                      +. .+  ..|++||+.++                 ....+..+...  .....| +|+++.|+..+.. +  .|+++++.
T Consensus       251 ~~~~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~  310 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDAD  310 (417)
T ss_pred             EECCCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence            33 33  45889998775                 22333333322  446677 8999988776543 2  68888888


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      +++. ..+..+...+..+.|+|++++++.++.++   .|.+||+.++....+..... . ....+++++..++..+.+
T Consensus       311 ~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~-~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       311 GGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-D-ESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-C-CCceECCCCCEEEEEEeC
Confidence            7664 34444455667889999999988877665   78899988765443332211 1 122367777766655554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=2.7e-12  Score=102.34  Aligned_cols=168  Identities=14%  Similarity=0.127  Sum_probs=128.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ..+++||+...  ++++..++.++.....--+--++++.|-+. .++.||+++.-++|++||.+.++        .|+..
T Consensus       173 n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~  242 (412)
T KOG3881|consen  173 NELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQ  242 (412)
T ss_pred             cceeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeE
Confidence            46899999876  678887776644332222334578888875 13799999999999999999664        56666


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~  159 (316)
                      |.      -...+++++...|+++++.++ .-+.+..||++.+                +.... +.+....  +.++..
T Consensus       243 fd------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----------------kl~g~~~kg~tGs--irsih~  298 (412)
T KOG3881|consen  243 FD------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----------------KLLGCGLKGITGS--IRSIHC  298 (412)
T ss_pred             ec------cccCcceeeeecCCCcEEEEecccchhheecccCc----------------eeeccccCCccCC--cceEEE
Confidence            53      336689999999999988887 6899999999988                55544 7777765  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  206 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~  206 (316)
                       +|.++++++++-|..|+|+|+++.+++..... .+.++++.+.++-
T Consensus       299 -hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  299 -HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDV  343 (412)
T ss_pred             -cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCc
Confidence             89999999999999999999999776654432 3456677776543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=4.4e-11  Score=103.72  Aligned_cols=208  Identities=9%  Similarity=0.065  Sum_probs=132.4

Q ss_pred             CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe----cCCcEEEEEcCCCCCCCCccCC
Q 021160           57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY----NDELVYLFEKNMGLGPSPLSLS  132 (316)
Q Consensus        57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~  132 (316)
                      ..|.++|.....               ...+ ..|...+...+|+|+|+.|+..    .+..|++||+.++         
T Consensus       182 ~~l~~~d~dg~~---------------~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---------  236 (435)
T PRK05137        182 KRLAIMDQDGAN---------------VRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---------  236 (435)
T ss_pred             eEEEEECCCCCC---------------cEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------
Confidence            368888876443               2222 4566789999999999866653    2568999999876         


Q ss_pred             ccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021160          133 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF  209 (316)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  209 (316)
                              ....+..+...  +...+| +|+|+.|+ +.+.++  .|++||+.+++. ..+..+.......+|+|+++.|
T Consensus       237 --------~~~~l~~~~g~--~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        237 --------QRELVGNFPGM--TFAPRF-SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             --------cEEEeecCCCc--ccCcEE-CCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence                    22344444433  677888 99998775 445454  478889887765 4455566666779999999998


Q ss_pred             EEEeC-CC--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC---CeEEEEEecccCccee--------EE
Q 021160          210 ATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTLAY--------RE  275 (316)
Q Consensus       210 ~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d---~~~~~w~~~~~~~~~~--------~~  275 (316)
                      +..+. ++  .|+++|+.++....+......... ..|+++++.++....+   ..+.+|++..+.....        ..
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~-~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~  383 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRYST-PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPT  383 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCCeEEeecCCCcccC-eEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCe
Confidence            77663 33  688889887765554433222323 3478888887765433   4677777654322111        14


Q ss_pred             eecccccccccCC-C-----CeEEEEeccCCCC
Q 021160          276 RRYNAADFESDEE-E-----GETYLLGFSDSDA  302 (316)
Q Consensus       276 ~~~~~~~~~~~~~-~-----~~v~~~~~~~~~~  302 (316)
                      ++|++..+..... .     ..+|++++..+..
T Consensus       384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             ECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            6666665543211 1     3578888765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.8e-11  Score=104.80  Aligned_cols=180  Identities=11%  Similarity=-0.000  Sum_probs=112.8

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCcee
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.+||+.+.+...+..            +.+...+.+|+|+|..++++.+.+|  .|.+||+.+++..           
T Consensus       229 ~l~~~dl~~g~~~~l~~------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------  285 (433)
T PRK04922        229 AIYVQDLATGQRELVAS------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------  285 (433)
T ss_pred             EEEEEECCCCCEEEecc------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------
Confidence            57888887665433221            1233457899999944445556555  5899999877521           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEec--CCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYN--DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                          .+ ..+.......+|+|+|+.|+..+  ++.  |+++++.++                . .+.+......  ....
T Consensus       286 ----~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g----------------~-~~~lt~~g~~--~~~~  341 (433)
T PRK04922        286 ----RL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG----------------S-AERLTFQGNY--NARA  341 (433)
T ss_pred             ----EC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC----------------C-eEEeecCCCC--ccCE
Confidence                11 22333446789999999666532  444  667776655                2 2223222222  4467


Q ss_pred             EEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCCC
Q 021160          158 NFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL  231 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~~  231 (316)
                      +| +|+|++|+..+.++   .|++||+.+++.. .+. +........|+|+++.++..+.+   ..|.++++.+.....+
T Consensus       342 ~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        342 SV-SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             EE-CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence            88 99999998765433   6999999887754 343 22244567999999987766543   3577888876554444


Q ss_pred             CC
Q 021160          232 PD  233 (316)
Q Consensus       232 ~~  233 (316)
                      ..
T Consensus       419 ~~  420 (433)
T PRK04922        419 VS  420 (433)
T ss_pred             cc
Confidence            43

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.42  E-value=1.6e-12  Score=110.57  Aligned_cols=149  Identities=15%  Similarity=0.276  Sum_probs=121.7

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160           94 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  173 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  173 (316)
                      .|..++|.|||..|+.+.+..+.+||...+                ..++++++|.+.  |.+++| +.+|+.+++|+.|
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG----------------~llqtLKgHKDt--VycVAy-s~dGkrFASG~aD   74 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG----------------TLLQPLKGHKDT--VYCVAY-AKDGKRFASGSAD   74 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCc----------------ccccccccccce--EEEEEE-ccCCceeccCCCc
Confidence            788999999999888888899999999998                789999999976  999999 9999999999999


Q ss_pred             CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEE
Q 021160          174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT  253 (316)
Q Consensus       174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  253 (316)
                      ..|.+|..+-.-.+ . ..|...|.|+.|+|-...|++++-. ..-+|....+.+.... ....+..+. |..|+.+++-
T Consensus        75 K~VI~W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~Cs-WtnDGqylal  149 (1081)
T KOG1538|consen   75 KSVIIWTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCS-WTNDGQYLAL  149 (1081)
T ss_pred             eeEEEeccccccee-e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh-hheeEEEee-ecCCCcEEEE
Confidence            99999986532211 2 2589999999999999899999853 5678988776543332 223344444 8899999999


Q ss_pred             ecCCCeEEEEEec
Q 021160          254 LTPDVIMHVLRLQ  266 (316)
Q Consensus       254 ~~~d~~~~~w~~~  266 (316)
                      |-.+|+|.+-+-.
T Consensus       150 G~~nGTIsiRNk~  162 (1081)
T KOG1538|consen  150 GMFNGTISIRNKN  162 (1081)
T ss_pred             eccCceEEeecCC
Confidence            9999999988643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.6e-12  Score=108.00  Aligned_cols=162  Identities=14%  Similarity=0.132  Sum_probs=120.2

Q ss_pred             cccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee-eCCcCCceeeeEEEecC-
Q 021160           86 HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGP-  162 (316)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~-  162 (316)
                      ..+.+|.+-|.+++|+.+|.+|++| .|-.+.|||.-..                +++..+ .+|...  |.++.|.+. 
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFvP~t  105 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFVPYT  105 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeeeccC
Confidence            3348999999999999999999997 5778999998765                555554 478866  999999533 


Q ss_pred             CCcEEEEeccCCeEEEEeccCC----------eeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCCCC--
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGG----------KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFP--  229 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~----------~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~~~--  229 (316)
                      +.+.+++|..|..|+++|+...          .....+..|...|..++-.|+++ .+.++++||+|+-+|++.....  
T Consensus       106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence            3567889999999999998742          23444567889999999999995 4889999999999999874311  


Q ss_pred             C------CC---CCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          230 P------LP---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       230 ~------~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .      +.   ...-....+...+.+..+++.|+.|--.+++|.
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            1      11   111112233323346778888999988888884

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=2.7e-11  Score=101.58  Aligned_cols=190  Identities=13%  Similarity=0.117  Sum_probs=139.8

Q ss_pred             CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEE------cc-------------CCC-e
Q 021160           47 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN-------------TSE-L  106 (316)
Q Consensus        47 ~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~-------------~~~-~  106 (316)
                      ..++|....||.+++|+..++++..++..-.            .-.+..++..|      +|             .+. .
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~   72 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM   72 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccch------------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence            3799999999999999999887654321111            11222233332      22             122 4


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      ++-| ..|.|.+|++..+                +....+.+......|.++.+ +.+-..|.+++.|..+..|+...++
T Consensus        73 lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~~  135 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEKV  135 (541)
T ss_pred             EEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccce
Confidence            4545 6899999999888                56666664333344999987 7888899999999999999999999


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCC----CCceeEE-ecCCCe
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR----EDHSRIT-LTPDVI  259 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~s-~~~d~~  259 (316)
                      .++........+.+++.+||++++++++  +.|++||+++++ +.++++|..++.....-..    .+.++++ ...+..
T Consensus       136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~  213 (541)
T KOG4547|consen  136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG  213 (541)
T ss_pred             eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence            9999998888999999999999999997  799999999998 8899999998866552221    2455554 344566


Q ss_pred             EEEEEecc
Q 021160          260 MHVLRLQR  267 (316)
Q Consensus       260 ~~~w~~~~  267 (316)
                      +-+|-+..
T Consensus       214 i~~w~v~~  221 (541)
T KOG4547|consen  214 ITVWVVEK  221 (541)
T ss_pred             eeEEEEEc
Confidence            67776654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=8.1e-12  Score=102.42  Aligned_cols=243  Identities=11%  Similarity=0.074  Sum_probs=166.7

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeE
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELL  107 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l  107 (316)
                      ..+|.+.|+.+.|+..| ..+++|+.|..|.+||...++              .......+|...|....|-|..  .-+
T Consensus       138 L~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~--------------~~l~f~SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGS--------------PKLSFESGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             ccCCCCccceeeecccC-ceeeccCccceEEeehhhccC--------------cccccccccccchhhhhccCCCCCcCc
Confidence            34799999999999999 899999999999999998776              3444458899999999998864  345


Q ss_pred             EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160          108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      ++ +.||++++=.+....             .......+..|.+.  |.-++.-+.....|.+++.|+.++-+|++.+.+
T Consensus       203 ~~~s~dgqvr~s~i~~t~-------------~~e~t~rl~~h~g~--vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETG-------------YVENTKRLAPHEGP--VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             eeccccCceeeeeecccc-------------ceecceecccccCc--cceeeecCCCCCcccccccccceeeeeeccCCc
Confidence            55 689999987664321             00223445566655  766766344566789999999999999987765


Q ss_pred             EEEee---cCcc---ceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCCC-------CCCCCC----ccc-ceeeeecCCC
Q 021160          187 VRLMV---GDRH---VVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-------PPLPDN----AEK-IMKANKQGRE  247 (316)
Q Consensus       187 ~~~~~---~~~~---~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~~-------~~~~~~----~~~-~~~~~~~~~~  247 (316)
                      ...+.   .+..   ...+++.+|... .+++++.|..+++||.+.-..       ..+..+    ..+ .+..+.++.+
T Consensus       268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~  347 (559)
T KOG1334|consen  268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD  347 (559)
T ss_pred             cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence            44332   2333   567899999877 599999999999999764321       111111    111 1334446655


Q ss_pred             CceeEEecCCCeEEEEEecccCc--------------ceeE------------EeecccccccccCCCCeEEEEeccCCC
Q 021160          248 DHSRITLTPDVIMHVLRLQRRQT--------------LAYR------------ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       248 ~~~~~s~~~d~~~~~w~~~~~~~--------------~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +.-+++.-.|-.+.+++-..+..              .+|.            -+.|...++.++.+-|.||+|+-..+.
T Consensus       348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e  427 (559)
T KOG1334|consen  348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE  427 (559)
T ss_pred             ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence            44444445566666664322111              0111            367888999999999999999987765


Q ss_pred             C
Q 021160          302 A  302 (316)
Q Consensus       302 ~  302 (316)
                      -
T Consensus       428 i  428 (559)
T KOG1334|consen  428 I  428 (559)
T ss_pred             H
Confidence            3

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.4e-10  Score=99.18  Aligned_cols=184  Identities=11%  Similarity=0.001  Sum_probs=114.0

Q ss_pred             CccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      +...+...+|+|+| +.|+..+.+   ..|.+|++.+++..               .+ ....+.....+|+|+|+.|+.
T Consensus       197 ~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        197 SREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRRE---------------QI-TNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             CCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEE---------------Ec-cCCCCCcCCeEECCCCCEEEE
Confidence            45678899999999 666655432   36888999877521               11 111233446899999986653


Q ss_pred             -e-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--CeEEEEecc
Q 021160          110 -Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK  182 (316)
Q Consensus       110 -~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~~wd~~  182 (316)
                       . .++  .|++||+.++                 ....+..+...  .....| +|+|+.|+..+. +  ..|+++++.
T Consensus       260 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             EEccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence             3 344  6888898876                 22334433322  556778 999998876654 3  358888887


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecC
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      +++... +...........|+|+++.|+..+.+ +  .|.+||+.++....+.... .... ..|+++++.++..+.
T Consensus       320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~-p~~spdg~~i~~~~~  393 (430)
T PRK00178        320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS-LDES-PSVAPNGTMLIYATR  393 (430)
T ss_pred             CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-CCCC-ceECCCCCEEEEEEe
Confidence            776433 22122233457899999998766543 3  5888999887644443211 1112 236777776665443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=1.2e-10  Score=97.84  Aligned_cols=182  Identities=10%  Similarity=0.099  Sum_probs=137.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEE------CC-------------CCCcEEEEEecCCcEEEE
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI------DP-------------RNPNYFAVGGSDEYARVY   62 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~------~~-------------~~~~~l~~g~~dg~v~~w   62 (316)
                      +|.+++||...++....|.-...-        .+...+..|      +|             .+...++-|...|.|.+|
T Consensus        14 ~g~l~iw~t~~~~~~~e~~p~~~~--------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen   14 DGRLRIWDTAKNQLQQEFAPIASL--------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             CCeEEEEEccCceeeeeeccchhc--------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            689999999887754443321111        223333333      22             222577888899999999


Q ss_pred             eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCC
Q 021160           63 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREE  141 (316)
Q Consensus        63 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  141 (316)
                      ++..+++.             .+.....|.+.|.++.++.+-..|.+ +.|..+..|+....                ..
T Consensus        86 s~~~g~it-------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----------------~~  136 (541)
T KOG4547|consen   86 SVAGGEIT-------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----------------VI  136 (541)
T ss_pred             EecCCeEE-------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----------------ee
Confidence            99988742             12222679999999999887777777 57999999999887                56


Q ss_pred             cceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC-----CCe-EEEEeCC
Q 021160          142 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-----IPM-FATCGIE  215 (316)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~-l~s~~~d  215 (316)
                      ...+......  +.+++. +||+..+++++  +.|++||+++++.+..|.+|.++|.+++|--.     |.+ |.++..+
T Consensus       137 ~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~  211 (541)
T KOG4547|consen  137 IRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE  211 (541)
T ss_pred             eeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence            6777766644  899998 99999999886  68999999999999999999999999999876     666 4455567


Q ss_pred             CcEEEecCCC
Q 021160          216 KTVKLWAPMP  225 (316)
Q Consensus       216 ~~i~iwd~~~  225 (316)
                      ..+.+|-+..
T Consensus       212 r~i~~w~v~~  221 (541)
T KOG4547|consen  212 RGITVWVVEK  221 (541)
T ss_pred             cceeEEEEEc
Confidence            7788887654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=2.5e-12  Score=119.88  Aligned_cols=189  Identities=14%  Similarity=0.212  Sum_probs=144.4

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  111 (316)
                      |-..|.++.=+|.. .+.++|+.||.+++|....++         ++.  +.+   ......++.+.|+.+|+.+.. -.
T Consensus      2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~---------~v~--~~r---t~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQ---------QVV--CFR---TAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred             ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCC---------eEE--Eee---ccCcchhhhhhhcccCCceeeecc
Confidence            34568888889988 699999999999999987665         122  222   222378999999999975555 57


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEeccC-C--e
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKG-G--K  185 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~~-~--~  185 (316)
                      ||.+.+|....                 ++......|...  ..++.|.   +..+++++   +++.+.+||..- +  .
T Consensus      2272 dg~l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred             CCceeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccc
Confidence            99999999874                 466667777744  8888883   35666653   588999999542 2  2


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      ++.  ..|.+.++++++-|..+.|++||.+|.|++||++..+ +++++.          +. ...++++++..|.+++|+
T Consensus      2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEE
Confidence            333  6899999999999999999999999999999999877 444432          22 456899999999999999


Q ss_pred             ecccCcc
Q 021160          265 LQRRQTL  271 (316)
Q Consensus       265 ~~~~~~~  271 (316)
                      +.....+
T Consensus      2397 ~s~~~ll 2403 (2439)
T KOG1064|consen 2397 LSEFGLL 2403 (2439)
T ss_pred             ccccchh
Confidence            9887544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=8.2e-11  Score=101.65  Aligned_cols=179  Identities=11%  Similarity=0.039  Sum_probs=107.9

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCc--CCcccCCCCCCCCcee
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDT   81 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~--~~~~~~~~~~~~~~~~   81 (316)
                      .|.+||+.+.+...+..            ..+.+.+.+|+|++..++++.+.++...||.++  .+.             
T Consensus       221 ~I~~~dl~~g~~~~l~~------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-------------  275 (427)
T PRK02889        221 VVYVHDLATGRRRVVAN------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-------------  275 (427)
T ss_pred             EEEEEECCCCCEEEeec------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-------------
Confidence            58888987765533321            123456899999994444567788887777654  332             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEc--CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEK--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                        ...+ ..+........|+|+|+.++. + .++...+|.+  .++                 ....+......  ....
T Consensus       276 --~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-----------------~~~~lt~~g~~--~~~~  333 (427)
T PRK02889        276 --LRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-----------------AAQRVTFTGSY--NTSP  333 (427)
T ss_pred             --cEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-----------------ceEEEecCCCC--cCce
Confidence              1111 223344566789999986654 3 2455566654  333                 12222212211  4456


Q ss_pred             EEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCCC
Q 021160          158 NFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPL  231 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~~  231 (316)
                      +| +|+|++|+..+.++   .|++||+.+++... +... .......|+|+++.|+.++.++   .+.+.++.......+
T Consensus       334 ~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l  410 (427)
T PRK02889        334 RI-SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL  410 (427)
T ss_pred             EE-CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence            77 99999998776554   69999998877543 3322 2346789999999977766444   355555644333334


Q ss_pred             C
Q 021160          232 P  232 (316)
Q Consensus       232 ~  232 (316)
                      .
T Consensus       411 ~  411 (427)
T PRK02889        411 S  411 (427)
T ss_pred             e
Confidence            3

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=2.4e-11  Score=108.12  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=120.9

Q ss_pred             ECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEc
Q 021160           42 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEK  120 (316)
Q Consensus        42 ~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~  120 (316)
                      ++++. -++++|+.-+.|.+|+....+               ......+|.+.|..+.|+.+|+++++ +.|.++++|++
T Consensus       141 ~s~~~-~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i  204 (967)
T KOG0974|consen  141 DSAEE-LYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI  204 (967)
T ss_pred             ccCcE-EEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence            45555 799999999999999987322               11134899999999999999999999 57999999999


Q ss_pred             CCCCCCCCccCCccccccCCCcc-eeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc-cceE
Q 021160          121 NMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVN  198 (316)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~  198 (316)
                      ++.                +... ..-+|+..  +..++| .|+  .++++++|-+.++|+.. ++.+..+..|. ..+.
T Consensus       205 ~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw  262 (967)
T KOG0974|consen  205 DSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIW  262 (967)
T ss_pred             ccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhccee
Confidence            987                3333 55678866  999998 666  99999999999999776 55566777776 5789


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          199 QLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       199 ~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      .++.+++...++|++.|+.+++|++...
T Consensus       263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999999999999999999999997643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2.2e-11  Score=101.87  Aligned_cols=168  Identities=16%  Similarity=0.212  Sum_probs=123.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      .++++++..++.. .+|++|+.+|.|..||.++......+.....|...    ........|++++|+.+|-.++.| ++
T Consensus       175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence            4689999999988 79999999999999999987643332211111110    001123359999999999766665 89


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      |.++|||++..                ++ .....|...-+|..+.|...+++--+...+...++|||-.+|+....+..
T Consensus       250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence            99999999987                33 34556766666899998544444444555678899999999999888764


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                       ...++.+|+-|++-++++|..+..+..|=+.
T Consensus       313 -t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  313 -TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             -cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence             4569999999999999999988877766543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.36  E-value=4.7e-11  Score=94.00  Aligned_cols=209  Identities=17%  Similarity=0.178  Sum_probs=145.5

Q ss_pred             cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCc-CCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      +..||...|++...-|.. .-+++.+.|.++++|--+ .++              ..+.+......+++++.+.++...|
T Consensus        19 ~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q--------------~wpsI~~~mP~~~~~~~y~~e~~~L   83 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQ--------------YWPSIYHYMPSPCSAMEYVSESRRL   83 (404)
T ss_pred             hhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccc--------------cCchhhhhCCCCceEeeeeccceEE
Confidence            345889999999998877 689999999999999754 343              2222323446789999999998877


Q ss_pred             EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEE---------
Q 021160          108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF---------  177 (316)
Q Consensus       108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~---------  177 (316)
                      +.+ ..|++.-+.+..-            +++....+.+..|...  +..+-| +....++++.+.|..+.         
T Consensus        84 ~vg~~ngtvtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~  148 (404)
T KOG1409|consen   84 YVGQDNGTVTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNR  148 (404)
T ss_pred             EEEEecceEEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCc
Confidence            776 6888888876432            2222344555555544  555555 44444454444443321         


Q ss_pred             ------------------------------EEe--ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          178 ------------------------------IWK--KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       178 ------------------------------~wd--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                                                    .-.  ...-.++.++.+|.+.+.+++|.|....+.+|..|..+.+||+-.
T Consensus       149 lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  149 LGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             ccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC
Confidence                                          111  112234557788999999999999999999999999999999977


Q ss_pred             CC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          226 TD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       226 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .+  ...+.+|.+.+.... ...--..+++++.||.|.+|+++..
T Consensus       229 ~~g~~~el~gh~~kV~~l~-~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  229 RKGTAYELQGHNDKVQALS-YAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             Ccceeeeeccchhhhhhhh-hhhhheeeeeccCCCeEEEEeccce
Confidence            65  566777777663332 3344568899999999999998643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=2.3e-10  Score=100.29  Aligned_cols=205  Identities=14%  Similarity=0.197  Sum_probs=144.5

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEE
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY  116 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~  116 (316)
                      .++.+++.+ .+.+.. .+..+.+|+..++.           +..+.......|.-.+++.+++|.+++++++ .||+|.
T Consensus       164 ~~I~~~~~g-e~~~i~-~~~~~~~~~v~~~~-----------~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~  230 (792)
T KOG1963|consen  164 KSIVDNNSG-EFKGIV-HMCKIHIYFVPKHT-----------KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL  230 (792)
T ss_pred             ccEEEcCCc-eEEEEE-EeeeEEEEEecccc-----------eeeccchhhhhhcccceeEEeccccceEEEeccCCcEE
Confidence            456667766 444443 45668888887643           1223444445677779999999999999997 699999


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV  196 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~  196 (316)
                      +|.--...           . .....+.+.=|.++  |.+++| +++|.+|++|+..+.+.+|.+.+++ .+.++.-.++
T Consensus       231 vw~d~~~~-----------~-~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~  294 (792)
T KOG1963|consen  231 VWRDFGSS-----------D-DSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP  294 (792)
T ss_pred             EEeccccc-----------c-ccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence            99743310           0 00233556666656  999999 9999999999999999999999988 5556656789


Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----CCCCCCC-------cccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          197 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDN-------AEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       197 v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      |..+.++||+.+.+....|+.|.+-......    +..+...       ...........+..+.++-.+..+.++++|+
T Consensus       295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            9999999999998888899999998765433    2222211       1222233334444556777788899999998


Q ss_pred             cccCcc
Q 021160          266 QRRQTL  271 (316)
Q Consensus       266 ~~~~~~  271 (316)
                      .+....
T Consensus       375 ~td~~i  380 (792)
T KOG1963|consen  375 YTDSTI  380 (792)
T ss_pred             ccccee
Confidence            876444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.9e-10  Score=97.08  Aligned_cols=203  Identities=10%  Similarity=0.020  Sum_probs=116.1

Q ss_pred             ccceEEEEECCCCCc--EEEEEecC--CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           34 SIRLNAIVIDPRNPN--YFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~--~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      ...+.+-+|+|+|..  ++++...+  ..|.+.++.+++..       .+         ..........+|+|||+.|+.
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------~l---------t~~~g~~~~p~wSPDG~~Laf  247 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------KI---------LALQGNQLMPTFSPRKKLLAF  247 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------Ee---------ecCCCCccceEECCCCCEEEE
Confidence            345667899999843  22244333  45777788766511       11         112333456899999986665


Q ss_pred             ec--CC----cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-cCCeEEEE--e
Q 021160          110 YN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIW--K  180 (316)
Q Consensus       110 ~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~w--d  180 (316)
                      ..  ++    .+.+|++..+.             .....+...+....  ....+| +|+|+.|+..+ .+|...+|  +
T Consensus       248 ~s~~~g~~di~~~~~~~~~g~-------------~g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        248 ISDRYGNPDLFIQSFSLETGA-------------IGKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             EECCCCCcceeEEEeecccCC-------------CCcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEE
Confidence            32  22    23446665420             00122222222221  456788 99999887765 35644444  4


Q ss_pred             ccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEE-ec
Q 021160          181 KKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LT  255 (316)
Q Consensus       181 ~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~  255 (316)
                      +.. +.....+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++...+......... ..|+++++.++. ..
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~-p~wSpDG~~L~f~~~  390 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKES-PSWAIDSLHLVYSAG  390 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccc-eEECCCCCEEEEEEC
Confidence            432 23344454444566789999999998766543   3699999998875555433222223 347788776654 33


Q ss_pred             C--CCeEEEEEecccC
Q 021160          256 P--DVIMHVLRLQRRQ  269 (316)
Q Consensus       256 ~--d~~~~~w~~~~~~  269 (316)
                      .  ...+.++++..++
T Consensus       391 ~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        391 NSNESELYLISLITKK  406 (428)
T ss_pred             CCCCceEEEEECCCCC
Confidence            2  3556667766553

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=6.5e-12  Score=107.99  Aligned_cols=205  Identities=15%  Similarity=0.212  Sum_probs=148.0

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s  109 (316)
                      .||..+|+.+.|+|+.+..+++++-|..+..||+++..        .|+..+      ..-...-..++|+... ..+|+
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------~p~ys~------~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------RPFYST------SSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCC--------cceeee------ecccccCceeeecccCcchhhh
Confidence            37999999999999999999999999999999999764        333333      2223455688998754 58888


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee--E
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--V  187 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~--~  187 (316)
                      +....|.+||++.+.               .++..+++|...  +..++|.......+.+.+.|++|++||......  .
T Consensus       177 shg~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~  239 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK  239 (1081)
T ss_pred             ccCCceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence            888899999999884               577788888765  899988666677889999999999999764322  1


Q ss_pred             EEeecCccceEEEEEcCCCCe--EEEEeCCCcEEEec---------CCCCC--CCCCCCCcccceeeeecCCC-------
Q 021160          188 RLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWA---------PMPTD--FPPLPDNAEKIMKANKQGRE-------  247 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~~--l~s~~~d~~i~iwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~-------  247 (316)
                      +.. ....+|..-.+-|-|.-  +.-.-.+..+.+++         ...+.  ++++.+|.+.+....|....       
T Consensus       240 ~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d  318 (1081)
T KOG0309|consen  240 RTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD  318 (1081)
T ss_pred             eec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence            222 23346666666664432  22111223444443         33332  77888999999888866541       


Q ss_pred             --CceeEEecCCCeEEEEEecc
Q 021160          248 --DHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       248 --~~~~~s~~~d~~~~~w~~~~  267 (316)
                        .-.+++-+.|..+++|.+..
T Consensus       319 ~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  319 SRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccceeEEEeecCCceEeeeccH
Confidence              34799999999999998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.31  E-value=1e-09  Score=99.65  Aligned_cols=201  Identities=13%  Similarity=0.140  Sum_probs=120.3

Q ss_pred             ceeeEEEEeeCCCcc-eEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC-------
Q 021160            2 VLFNMLFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI-------   73 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~-~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~-------   73 (316)
                      +|+|++||++.-... ..++..     ...+.-...+.++...+.+ ..+|+++.||.|++.+++........       
T Consensus      1070 DGtVKvW~~~k~~~~~~s~rS~-----ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1070 DGTVKVWNLRKLEGEGGSARSE-----LTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred             CceEEEeeehhhhcCcceeeee-----EEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecc
Confidence            799999999864332 111110     0000125678999999988 89999999999999999752211100       


Q ss_pred             C--CCCCceecc------------------------ccc------c-cCCCcccEEEEEEccCCCeEEEe-cCCcEEEEE
Q 021160           74 S--SDTPVDTFC------------------------PRH------L-IGKNNIHITGLAYSNTSELLISY-NDELVYLFE  119 (316)
Q Consensus        74 ~--~~~~~~~~~------------------------~~~------~-~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd  119 (316)
                      +  ....+-...                        ...      + ..-..+.|++++.+|.+..++.| +.|.+.+||
T Consensus      1144 n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1144 NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred             cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEE
Confidence            0  011110000                        000      0 01124579999999999988886 799999999


Q ss_pred             cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe--cCCCcEEEEec--cCCeEEEEeccCCeeEEEeecCc-
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDR-  194 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~-  194 (316)
                      ++-+                .++..+. |.....+..+..+  .+.....++++  ..+.|-+|++.+|.+...+.... 
T Consensus      1224 LRF~----------------~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1224 LRFR----------------VPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred             eecC----------------ceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence            9866                3433333 1111235555542  33334555544  47889999999887665553220 


Q ss_pred             ------------------cceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          195 ------------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       195 ------------------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                                        -......+..-+..+.+|+.|..||.||...
T Consensus      1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence                              0111223333456788999999999999764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=2.3e-11  Score=95.75  Aligned_cols=228  Identities=15%  Similarity=0.169  Sum_probs=150.9

Q ss_pred             ccceEEEEECCCC-CcEEEEEecCCcEEEEeCcCCcccCC---------------------CCCCCCceecccccccCCC
Q 021160           34 SIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSP---------------------ISSDTPVDTFCPRHLIGKN   91 (316)
Q Consensus        34 ~~~v~~~~~~~~~-~~~l~~g~~dg~v~~wd~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~   91 (316)
                      ...|+.+.|.+++ ...++..+.|.+|++|-+........                     -.....+...+.+....+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            4568999998764 24677788999999999875443220                     0011223334445555789


Q ss_pred             cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160           92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      ...|.++.++.|.+.++++.|-.|.+|+++-.    ..++.+-+++..    .+..-+  ..|++..|++...+.++-.+
T Consensus       164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~----d~sFnIVDIKP~----nmEeLt--eVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADDLRINLWNLEII----DQSFNIVDIKPA----NMEELT--EVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeEeeeeeecCccceEeeccceeeeecccccc----CCceeEEEcccc----CHHHHH--HHHhhhccCHhHccEEEEec
Confidence            99999999999999999999999999999754    222222222111    011111  12788888555677888888


Q ss_pred             cCCeEEEEeccCCeeEE----Eee------------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCC
Q 021160          172 DCGHLFIWKKKGGKLVR----LMV------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD  233 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~----~~~------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~  233 (316)
                      ..|+|++.|++...+.-    .+.            .--..|..+.|+++|+++++-.. -+|++||+....  +.+.+-
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            99999999998543211    111            11236888999999999988653 589999985432  333332


Q ss_pred             Cc------------ccc---eeeeecCCCCceeEEecCCCeEEEEEecccCccee
Q 021160          234 NA------------EKI---MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY  273 (316)
Q Consensus       234 ~~------------~~~---~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~  273 (316)
                      |.            +.+   ..+. |+.++...++|+....++++++.++.....
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~-~sg~~~~v~TGsy~n~frvf~~~~gsk~d~  366 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECS-WSGNDSYVMTGSYNNVFRVFNLARGSKEDF  366 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEE-EcCCcceEecccccceEEEecCCCCcceee
Confidence            21            222   2233 666778999999999999999776654433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.7e-09  Score=92.61  Aligned_cols=182  Identities=12%  Similarity=-0.009  Sum_probs=108.4

Q ss_pred             ccceEEEEECCCCCcEEEEEec-CC--cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGS-DE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  109 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~-dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  109 (316)
                      ...+.+..|+|+| +.|+..+. ++  .|.+||+.+++..            ..    ..........+|+|+|+.|+. 
T Consensus       217 ~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~------------~l----t~~~g~~~~~~wSPDG~~La~~  279 (448)
T PRK04792        217 PEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVRE------------KV----TSFPGINGAPRFSPDGKKLALV  279 (448)
T ss_pred             CCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeE------------Ee----cCCCCCcCCeeECCCCCEEEEE
Confidence            5578899999999 66665543 33  5888898876521            01    111122346799999996554 


Q ss_pred             -ecCCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--CeEEEEeccC
Q 021160          110 -YNDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKG  183 (316)
Q Consensus       110 -~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~~wd~~~  183 (316)
                       ..++.  |+++|+.++                 ....+..+...  ....+| +|+++.|+..+. +  ..|+++|+.+
T Consensus       280 ~~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        280 LSKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             EeCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCC
Confidence             34554  788888765                 23333333322  567788 999998876654 3  3577778877


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160          184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      ++... +..........+|+|++++|+..+. ++  .|.++|+.++....+..... .... .|+++++.++..+
T Consensus       340 g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~-d~~p-s~spdG~~I~~~~  411 (448)
T PRK04792        340 GKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL-DESP-SVAPNGTMVIYST  411 (448)
T ss_pred             CCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC-CCCc-eECCCCCEEEEEE
Confidence            76433 3222223345789999999776554 34  45557877776443332211 1111 3677776655433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.29  E-value=6.8e-10  Score=85.79  Aligned_cols=234  Identities=10%  Similarity=0.021  Sum_probs=141.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC---CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      .|.+.++++...+..+.-.....        -...+..+.|..   ++.-.++-+-.+|.|.++..........   -++
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~--------dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~---L~~  113 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCT--------DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH---LRG  113 (339)
T ss_pred             ccceEEEeecccccCccceeeee--------cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee---ecc
Confidence            47788888887765542211111        134566677753   3322566677789999988764331100   011


Q ss_pred             ceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                      +...      .-......++.|++.+..++++ ++|.+.+-+....              ..+.++.++.|.-+  ++-.
T Consensus       114 ls~~------ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta  171 (339)
T KOG0280|consen  114 LSSK------KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTA  171 (339)
T ss_pred             cchh------hhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--------------eeeeccccccccee--eeee
Confidence            1100      0001135578889888766665 7888885554433              11345578888876  8888


Q ss_pred             EEecCCCcEEEEeccCCeEEEEecc-CCeeEEE-eecCccceEEEEEcCC-CCeEEEEeCCCcEEEecCCCCCCCCC-CC
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRL-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDFPPL-PD  233 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~-~~~~~~~v~~~~~~p~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~  233 (316)
                      .|...+.+++.+|++|+.+..||++ .++.+.. .+-|...|.++.-+|. ..+++||+.|-.|++||.+......+ ..
T Consensus       172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~  251 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK  251 (339)
T ss_pred             ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence            8866677899999999999999998 4454444 4568889999988875 55699999999999999985432111 12


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ....+..+.+.+.....++..+.-.-.++.+.+.+
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            33555555533333223333333333455555443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=3.2e-10  Score=97.67  Aligned_cols=221  Identities=11%  Similarity=0.121  Sum_probs=154.9

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      ......+++|+... .++|+|+.||.+++..+.+.......+.-....++...+...+|...|.-+.|+.+.+.|.++ .
T Consensus        13 nnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            35678999999987 899999999999999887654211111112334445556668999999999999988888886 6


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--E
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--L  189 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--~  189 (316)
                      +|.|.+|-+-.+                .-...+....+...|.+++| ..+|..|+..-.||.|.+=.+.. ..+.  .
T Consensus        92 ~GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdG-NRIwgKe  153 (1189)
T KOG2041|consen   92 SGLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDG-NRIWGKE  153 (1189)
T ss_pred             CceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeecc-ceecchh
Confidence            999999999877                34444555555566999999 89999999999999998777663 3332  2


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC------------CCCcccceeeeec-------CCCCce
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL------------PDNAEKIMKANKQ-------GREDHS  250 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~-------~~~~~~  250 (316)
                      +++  .....+.|++|.+.++.+-..|.+.+||.+......+            ......+....|.       .|+...
T Consensus       154 Lkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~  231 (1189)
T KOG2041|consen  154 LKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR  231 (1189)
T ss_pred             cch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence            222  2334688999999877777789999999775421111            1111123233332       335667


Q ss_pred             eEEecCCCeEEEEEecccCcceeE
Q 021160          251 RITLTPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       251 ~~s~~~d~~~~~w~~~~~~~~~~~  274 (316)
                      ++.+-..|.+++.+-.+...++..
T Consensus       232 lavcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  232 LAVCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             EEEEEcCceehhhhhcCCCCCeEE
Confidence            788888899998887666565554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.29  E-value=1.1e-09  Score=92.04  Aligned_cols=181  Identities=11%  Similarity=0.088  Sum_probs=117.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|.|.|..+.+....+...           ...-..+.|+|++ +++++.+.||.|.++|+.+.+.            
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~-----------~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~------------   70 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTG-----------GAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKV------------   70 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-S-----------TTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSE------------
T ss_pred             CCEEEEEECCCCeEEEEEcCC-----------CCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccE------------
Confidence            478999998887776666542           1122457899999 8888889999999999998873            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC-----Ccee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTV  154 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i  154 (316)
                        ...+..  ......++++++|++++.+  .++.+.++|.++.                ++++.+.....     ...+
T Consensus        71 --v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv  130 (369)
T PF02239_consen   71 --VATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL----------------EPVKTIPTGGMPVDGPESRV  130 (369)
T ss_dssp             --EEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT------------------EEEEEE--EE-TTTS---E
T ss_pred             --EEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccc----------------cceeecccccccccccCCCc
Confidence              222212  2345789999999977764  5999999999887                56666553321     1226


Q ss_pred             eeEEEecCCCc-EEEEeccCCeEEEEeccCCeeEE-EeecCccceEEEEEcCCCCeEEE-EeCCCcEEEecCCCCC
Q 021160          155 KGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMPTD  227 (316)
Q Consensus       155 ~~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~iwd~~~~~  227 (316)
                      ..+.. ++... ++++--+.+.|.+.|....+.+. ....-........|+|++++++. ...+..|-++|..+++
T Consensus       131 ~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  131 AAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             EEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             eeEEe-cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence            66665 66666 55666667899999977654332 22223345678999999998654 4567789999988775

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.24  E-value=1.6e-09  Score=93.90  Aligned_cols=176  Identities=12%  Similarity=0.059  Sum_probs=109.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ..|++||+.+.+...+..            +.+.+.+++|+|++..++++.+.++  .|.+|++.+++..          
T Consensus       214 ~~i~v~d~~~g~~~~~~~------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----------  271 (417)
T TIGR02800       214 PEIYVQDLATGQREKVAS------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----------  271 (417)
T ss_pred             cEEEEEECCCCCEEEeec------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----------
Confidence            368888887664432221            2345667899999943444555544  5888888866421          


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ec-CC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                           .+ ..+........|+|+|+.|+. +. ++  .|+++|+.++                + ...+..+...  ...
T Consensus       272 -----~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----------------~-~~~l~~~~~~--~~~  326 (417)
T TIGR02800       272 -----RL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----------------E-VRRLTFRGGY--NAS  326 (417)
T ss_pred             -----EC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----------------C-EEEeecCCCC--ccC
Confidence                 11 122233446789999986654 32 33  5888887665                2 2333333322  667


Q ss_pred             EEEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCC
Q 021160          157 VNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDF  228 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~  228 (316)
                      ..| +|++++++..+.++   .|.+||+.++.. ..+... .......|+|+++.|+..+.++   .+++.+......
T Consensus       327 ~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~  401 (417)
T TIGR02800       327 PSW-SPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR  401 (417)
T ss_pred             eEE-CCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence            788 99999999888766   799999987654 333322 2335568999999987766554   355556554433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.23  E-value=2.3e-10  Score=89.78  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=99.1

Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE--ecCCcEE
Q 021160           39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVY  116 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~  116 (316)
                      -++|+|+| +++|+.+.- .+.|-|..+-++.+               +.. --+.|.-+.|..+..++.+  ..++.|.
T Consensus        13 ~c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~q---------------lf~-cldki~yieW~ads~~ilC~~yk~~~vq   74 (447)
T KOG4497|consen   13 FCSFSPCG-NYIASLSRY-RLVIRDSETLQLHQ---------------LFL-CLDKIVYIEWKADSCHILCVAYKDPKVQ   74 (447)
T ss_pred             ceeECCCC-Ceeeeeeee-EEEEeccchhhHHH---------------HHH-HHHHhhheeeeccceeeeeeeeccceEE
Confidence            46899999 999998765 67778887765321               101 1346778899988876555  3689999


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCCeeEEEeecCcc
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRH  195 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~  195 (316)
                      +|++...                .-.-.+.....+  +.+++| +|+|+.|+ +..-+-.|.+|.+.+.+.... +-.+.
T Consensus        75 vwsl~Qp----------------ew~ckIdeg~ag--ls~~~W-SPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~  134 (447)
T KOG4497|consen   75 VWSLVQP----------------EWYCKIDEGQAG--LSSISW-SPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKT  134 (447)
T ss_pred             EEEeecc----------------eeEEEeccCCCc--ceeeeE-CCCcceEeeeecceeEEEEEEeccceeEEe-ccccc
Confidence            9999876                344455555544  899999 99996554 555688999999998775433 32334


Q ss_pred             ceEEEEEcCCCCeEEEEeC
Q 021160          196 VVNQLEPHPHIPMFATCGI  214 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~  214 (316)
                      .+..++|+|+|++.+.++.
T Consensus       135 ~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  135 NVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CceeEEECCCCceeeeeec
Confidence            5688999999999777663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.22  E-value=4.1e-09  Score=86.78  Aligned_cols=191  Identities=16%  Similarity=0.114  Sum_probs=132.6

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEE-ECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV-IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~-~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +.|.|.++|..+.+.+++-............-.-.+..-+. |++....+++..+. |+..+.+...+-.          
T Consensus       285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~----------  353 (668)
T COG4946         285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYS----------  353 (668)
T ss_pred             cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCee----------
Confidence            46889999988776554432211110000000011111222 45544478888776 8888887765531          


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEE-EecCC-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLI-SYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                             +.-+|...|.-..+..+++-++ +..|| .+-++|.+++                 .++.+...-..  |.++
T Consensus       354 -------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----------------e~kr~e~~lg~--I~av  407 (668)
T COG4946         354 -------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----------------EVKRIEKDLGN--IEAV  407 (668)
T ss_pred             -------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----------------eEEEeeCCccc--eEEE
Confidence                   1135666788777877776444 45677 8999999987                 45666666544  9999


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC----cEEEecCCCCCCC
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK----TVKLWAPMPTDFP  229 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~----~i~iwd~~~~~~~  229 (316)
                      .. +++|++++.+.+...+.+.|+.+|+....-+...+-|+...|||+++++|-+--+|    .|+++|..++++.
T Consensus       408 ~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         408 KV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             EE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            98 99999999999999999999999987655556678899999999999999887665    6899999988743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.9e-09  Score=91.74  Aligned_cols=166  Identities=9%  Similarity=0.074  Sum_probs=97.4

Q ss_pred             cceEEEEECCCCCcEEEEEe-cCC----cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           35 IRLNAIVIDPRNPNYFAVGG-SDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~-~dg----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      +.....+|+|+| +.|+..+ .+|    .+.+|++..+..       .     ....+...........+|+|+|+.|+.
T Consensus       231 g~~~~p~wSPDG-~~Laf~s~~~g~~di~~~~~~~~~g~~-------g-----~~~~lt~~~~~~~~~p~wSPDG~~Laf  297 (428)
T PRK01029        231 GNQLMPTFSPRK-KLLAFISDRYGNPDLFIQSFSLETGAI-------G-----KPRRLLNEAFGTQGNPSFSPDGTRLVF  297 (428)
T ss_pred             CCccceEECCCC-CEEEEEECCCCCcceeEEEeecccCCC-------C-----cceEeecCCCCCcCCeEECCCCCEEEE
Confidence            344568999999 5555443 333    344466664310       0     111111222233456799999996665


Q ss_pred             -e-cCCcEEEE--EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC---CeEEEEecc
Q 021160          110 -Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKK  182 (316)
Q Consensus       110 -~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~~wd~~  182 (316)
                       + .++...+|  ++....               .....+......  +....| +|+|+.|+..+.+   ..|++||+.
T Consensus       298 ~s~~~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             EECCCCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECC
Confidence             3 35654444  443210               122333333322  667888 9999998876543   469999999


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEecCCCCCCCCCC
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLP  232 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~iwd~~~~~~~~~~  232 (316)
                      +++... +......+....|+|+++.|+..+.   ...|.++++.+++...+.
T Consensus       360 ~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        360 TGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            887543 3333345677999999998764432   346888898877644443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.21  E-value=1.7e-08  Score=77.32  Aligned_cols=190  Identities=10%  Similarity=-0.004  Sum_probs=122.2

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeEEEecCCcEEEEEcCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLG  125 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~  125 (316)
                      -+||.|+..|...+|.+.+.+..              ..+...|...|+-+.=..+.  .+++++.|.++++.+++.+  
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h--------------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~--  148 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGH--------------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD--  148 (344)
T ss_pred             cEEEeccccceeeeecccCcccc--------------eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC--
Confidence            48999999999999999876521              11112222322222212222  3667778999999988765  


Q ss_pred             CCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEE-e-ecCccceEEEEE
Q 021160          126 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL-M-VGDRHVVNQLEP  202 (316)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~-~-~~~~~~v~~~~~  202 (316)
                                    ....  ..|...-.+.++++ +++++++++.++...|.+|.+.. ++.+.. . ..-+..-.+..|
T Consensus       149 --------------s~~~--~~h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~  211 (344)
T KOG4532|consen  149 --------------SNKF--AVHNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF  211 (344)
T ss_pred             --------------cccc--eeeccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence                          1221  12222123788888 99999999999999999999864 333322 2 223345577899


Q ss_pred             cCCCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeeecCCCC--ceeEEecCCCeEEEEEecccCc
Q 021160          203 HPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGRED--HSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       203 ~p~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +.+...+|++..||++.|||++...     ...-+.|....+....+++.+  .+|+-.-.-+.+++.|+++...
T Consensus       212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            9999999999999999999998654     122223444444555566532  2344444457789999887643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=3.4e-09  Score=92.03  Aligned_cols=181  Identities=12%  Similarity=0.052  Sum_probs=105.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCc--EEEEeCcCCcccCCCCCCCCcee
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~--v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.+||+.+.+...+...            .+.....+|+|++..++++.+.++.  |.++|+.+++.            
T Consensus       243 ~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~------------  298 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL------------  298 (448)
T ss_pred             EEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe------------
Confidence            467777766544322211            1233478999999444455666675  77778776642            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                         ..+ ..+.......+|+|+|+.++. + .++  .|+++|+.++                + ...+......  ....
T Consensus       299 ---~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g----------------~-~~~Lt~~g~~--~~~~  355 (448)
T PRK04792        299 ---TRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG----------------K-VSRLTFEGEQ--NLGG  355 (448)
T ss_pred             ---EEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC----------------C-EEEEecCCCC--CcCe
Confidence               111 223334567899999986654 3 233  4777777665                2 2222212211  3456


Q ss_pred             EEecCCCcEEEEecc-CC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEecCCCCCCCCC
Q 021160          158 NFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPL  231 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~iwd~~~~~~~~~  231 (316)
                      +| +|+|++|+..+. ++  .|.++|+.+++.. .+... .......|+|+++.|+..+. ++  .+.+++........+
T Consensus       356 ~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        356 SI-TPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL  432 (448)
T ss_pred             eE-CCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            77 999999877655 33  4666788877643 33322 12234579999998765553 33  367778765554445


Q ss_pred             CCC
Q 021160          232 PDN  234 (316)
Q Consensus       232 ~~~  234 (316)
                      ..+
T Consensus       433 ~~~  435 (448)
T PRK04792        433 PAG  435 (448)
T ss_pred             cCC
Confidence            433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=1.5e-10  Score=108.57  Aligned_cols=174  Identities=14%  Similarity=0.240  Sum_probs=130.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++|.-...+..-+++..          .+..|+.+.|+.+| +.+.++..||.+.+|.....          |+..
T Consensus      2229 dgsv~~~~w~~~~~v~~~rt~----------g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk----------~~~s 2287 (2439)
T KOG1064|consen 2229 DGSVRMFEWGHGQQVVCFRTA----------GNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK----------PYTS 2287 (2439)
T ss_pred             CceEEEEeccCCCeEEEeecc----------CcchhhhhhhcccC-CceeeeccCCceeecccCCc----------ceec
Confidence            688999988766654444432          24689999999999 89999999999999998722          2222


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e---cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y---NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                            ...|......+.|-.  ..+++ +   .++.+.+||.....               ..-..-..|..+  ++++
T Consensus      2288 ------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~---------------~~s~v~~~H~~g--aT~l 2342 (2439)
T KOG1064|consen 2288 ------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP---------------MNSLVHTCHDGG--ATVL 2342 (2439)
T ss_pred             ------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCc---------------ccceeeeecCCC--ceEE
Confidence                  256777778888866  44444 2   37889999976541               111122677766  9999


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  232 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~  232 (316)
                      ++ -|..++|++|+.+|.|++||++..++++.++.         ++ ...+|++++..|.|+||++..-. +.+++
T Consensus      2343 ~~-~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2343 AY-APKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             EE-cCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99 99999999999999999999998887776654         44 56789999999999999998765 55544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.17  E-value=7.7e-10  Score=88.96  Aligned_cols=162  Identities=14%  Similarity=0.253  Sum_probs=110.9

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE---ec
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS---YN  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s---~~  111 (316)
                      ....+..++.+ .++|++..+....++++.....     ....+..++.       ...-+++.|..+.. .+++   +.
T Consensus        64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----GAKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----cceeeeEeec-------ccCcceeeeeeccceEEEEeecCC
Confidence            34455667777 8999998888888888775431     0011111111       11223344444333 3333   23


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-  190 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-  190 (316)
                      ...+.+|....+                 ....+.||-..  ++++++ +||+++|+++..|..|++-.......+..+ 
T Consensus       131 ~~~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  131 VYSFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFC  190 (390)
T ss_pred             ceeeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence            455666665543                 44556788866  999999 999999999999999999887766666665 


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL  231 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~  231 (316)
                      -||+..|..++.-++. .|+++|.|+++++||+++++ +.++
T Consensus       191 lGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  191 LGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             cccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCccccc
Confidence            4799999999998764 48899999999999999887 4433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=1.7e-10  Score=96.59  Aligned_cols=207  Identities=10%  Similarity=0.118  Sum_probs=139.9

Q ss_pred             ccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        28 ~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      ..+.||...|.+++--.+. +-+++++.|.+|++|.++...       ++--..-|..+. ..|+.+|..+.|-.+.+.+
T Consensus       729 ~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~Eg-------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i  799 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEG-------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSI  799 (1034)
T ss_pred             ecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEecccc-------CccccceeeeEh-hhccCcccceeeeecccee
Confidence            3456899999988766655 789999999999999997421       011111133333 7899999999999887777


Q ss_pred             EEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEe-ccCCeEEEEeccC
Q 021160          108 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKG  183 (316)
Q Consensus       108 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~~wd~~~  183 (316)
                      +++ |+-|++||.--+                .++..+.   .+.....|.++.  +-+...+..| +...+|+++|.+.
T Consensus       800 ~Sc-D~giHlWDPFig----------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  800 ASC-DGGIHLWDPFIG----------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             eec-cCcceeeccccc----------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeeccc
Confidence            765 788999997554                2322111   122222355553  2344444444 7789999999998


Q ss_pred             CeeEEEee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCC
Q 021160          184 GKLVRLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       184 ~~~~~~~~-----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      ++....++     +....+.+++..|.|+.++.+-..|.|.+.|.++++ +...+.-....++++  .+.+..++....|
T Consensus       861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~sald  938 (1034)
T KOG4190|consen  861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALD  938 (1034)
T ss_pred             ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhccc
Confidence            87766554     344678899999999999999889999999999998 555554444444443  2333455555555


Q ss_pred             CeEEE-EE
Q 021160          258 VIMHV-LR  264 (316)
Q Consensus       258 ~~~~~-w~  264 (316)
                      ..+-+ |-
T Consensus       939 HslaVnWh  946 (1034)
T KOG4190|consen  939 HSLAVNWH  946 (1034)
T ss_pred             ceeEeeeh
Confidence            55555 54

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=6.3e-09  Score=90.42  Aligned_cols=178  Identities=13%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEE-EEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA-VGGSDE--YARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~-~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .|.+||+.+.+..++..            ..+.+...+|+|+| +.|+ +...+|  .|.+||+.+++..          
T Consensus       224 ~l~~~~l~~g~~~~l~~------------~~g~~~~~~~SpDG-~~la~~~~~~g~~~Iy~~d~~~~~~~----------  280 (430)
T PRK00178        224 RIFVQNLDTGRREQITN------------FEGLNGAPAWSPDG-SKLAFVLSKDGNPEIYVMDLASRQLS----------  280 (430)
T ss_pred             EEEEEECCCCCEEEccC------------CCCCcCCeEECCCC-CEEEEEEccCCCceEEEEECCCCCeE----------
Confidence            46677776654433221            12334578999999 5554 555555  5778898876521          


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ec-C--CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                           .+ ..+........|+|+|+.++. +. +  ..|+++++.++                +. ..+.....  ....
T Consensus       281 -----~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g----------------~~-~~lt~~~~--~~~~  335 (430)
T PRK00178        281 -----RV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG----------------RA-ERVTFVGN--YNAR  335 (430)
T ss_pred             -----Ec-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC----------------CE-EEeecCCC--Cccc
Confidence                 11 223334556789999985554 32 3  35777787665                22 22221111  1344


Q ss_pred             EEEecCCCcEEEEeccC-C--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCC
Q 021160          157 VNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPP  230 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~  230 (316)
                      ..| +|++++|+..+.. +  .|.++|+.+++.. .+.. ........|+|+++.++..+.+   ..+.++++.......
T Consensus       336 ~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~  412 (430)
T PRK00178        336 PRL-SADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLP  412 (430)
T ss_pred             eEE-CCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence            667 9999999877643 2  5888999887643 3322 2222356899999997766543   346777776554434


Q ss_pred             CC
Q 021160          231 LP  232 (316)
Q Consensus       231 ~~  232 (316)
                      +.
T Consensus       413 l~  414 (430)
T PRK00178        413 LP  414 (430)
T ss_pred             Cc
Confidence            43

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.13  E-value=1.3e-09  Score=86.00  Aligned_cols=183  Identities=11%  Similarity=0.112  Sum_probs=116.8

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s  109 (316)
                      .|..-|++++++.+. ..++++ .|-.|.+|+++-...      ...+-...+... ..-+.-|++..|+|...  ++.+
T Consensus       162 aHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~------sFnIVDIKP~nm-EeLteVITsaEFhp~~cn~f~YS  232 (433)
T KOG1354|consen  162 AHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQ------SFNIVDIKPANM-EELTEVITSAEFHPHHCNVFVYS  232 (433)
T ss_pred             cceeEeeeeeecCcc-ceEeec-cceeeeeccccccCC------ceeEEEccccCH-HHHHHHHhhhccCHhHccEEEEe
Confidence            688999999999988 666665 578899999974320      001111111111 12245688999999764  4445


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEec-cCCeeEE
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGKLVR  188 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~-~~~~~~~  188 (316)
                      ++.|+|++.|++....-...+.-.+.........-|.+--.  .|.++.| +++|+++++-.. -+|++||+ ...+++.
T Consensus       233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIs--SISDvKF-s~sGryilsRDy-ltvk~wD~nme~~pv~  308 (433)
T KOG1354|consen  233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIIS--SISDVKF-SHSGRYILSRDY-LTVKLWDLNMEAKPVE  308 (433)
T ss_pred             cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhh--hhhceEE-ccCCcEEEEecc-ceeEEEeccccCCcce
Confidence            68999999999854100000000000000011111222222  3888999 999999998754 58999998 4567777


Q ss_pred             EeecCcc------------c---eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          189 LMVGDRH------------V---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       189 ~~~~~~~------------~---v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +++-|..            .   =..++|+-++.+++||+....++++++..+.
T Consensus       309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            7766531            2   2457899999999999999999999976665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=5.6e-08  Score=92.37  Aligned_cols=215  Identities=11%  Similarity=0.139  Sum_probs=129.4

Q ss_pred             ceEEEEECCCCCcEE-EEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccC-CCcccEEEEEEccC-CCeEEE-ec
Q 021160           36 RLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNT-SELLIS-YN  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~s-~~  111 (316)
                      ....+++++++ +.| ++-...+.|+++|+.++..............+.-..... ..-..-..++++|+ +.++++ ..
T Consensus       625 ~P~GIavd~~g-n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKK-NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCC-CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            45789999987 544 444556789999987664211100000000000000000 00112357899994 556666 47


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC---------c----CCceeeeEEEecCCCc-EEEEeccCCeEE
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---------R----NSQTVKGVNFFGPNDE-YVMSGSDCGHLF  177 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~i~~~~~~~~~~~-~l~~~~~dg~v~  177 (316)
                      ++.|++||..++.                 ...+.+.         .    .......+++ +|++. ++++-+.++.|+
T Consensus       704 ~~~I~v~d~~~g~-----------------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        704 QHQIWEYNISDGV-----------------TRVFSGDGYERNLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIR  765 (1057)
T ss_pred             CCeEEEEECCCCe-----------------EEEEecCCccccCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEE
Confidence            8999999987652                 1111110         0    0012567888 88887 455666789999


Q ss_pred             EEeccCCeeEEEeec-------------C--------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCC--
Q 021160          178 IWKKKGGKLVRLMVG-------------D--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--  234 (316)
Q Consensus       178 ~wd~~~~~~~~~~~~-------------~--------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--  234 (316)
                      +||+.++.......+             +        -.....++++++|..+++-..++.|++||..++.+.++.+.  
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~  845 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK  845 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence            999987653211100             0        11346889999999888888999999999987653322211  


Q ss_pred             ------------cccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          235 ------------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       235 ------------~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                                  ......++ ..++++++++-+.++.|++|++.++..
T Consensus       846 ~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        846 AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                        11222333 566788999999999999999987654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.1e-08  Score=85.89  Aligned_cols=166  Identities=9%  Similarity=0.123  Sum_probs=112.6

Q ss_pred             EEEEECCCCCcEEEEEec-----------CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           38 NAIVIDPRNPNYFAVGGS-----------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~-----------dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      -.+.|++.+..+|+.++.           ..+++++++...+              +...  ..-.++|.++.|+|+++-
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--------------~~V~--L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--------------VSVP--LLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--------------EEEe--cCCCCCceEEEECCCCCE
Confidence            468899887656555543           2357777776333              1111  223689999999999974


Q ss_pred             E-EE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CCeEEEEe
Q 021160          107 L-IS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWK  180 (316)
Q Consensus       107 l-~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~~wd  180 (316)
                      + +. | .--++.|||++..                 ++..+.  ..+  -+++-| +|.|++|+.++-   -|.|-+||
T Consensus       285 F~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             EEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEEEe
Confidence            4 43 4 5888999999764                 444443  222  455666 999999987764   67899999


Q ss_pred             ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEecCCCCCCCCCCCCcccceeeeec
Q 021160          181 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDFPPLPDNAEKIMKANKQ  244 (316)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  244 (316)
                      +.+.+++..+..-..  +-..|+|+|.+|+|+..      |+.++||+..+..+..-. ...++++..|.
T Consensus       343 v~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~W~  409 (566)
T KOG2315|consen  343 VPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVEWR  409 (566)
T ss_pred             ccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhheeee
Confidence            999888888775433  45789999999988864      688999998876532211 11145555544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.08  E-value=3.6e-08  Score=83.04  Aligned_cols=190  Identities=13%  Similarity=0.123  Sum_probs=118.1

Q ss_pred             cEE-EEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCC
Q 021160           48 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG  125 (316)
Q Consensus        48 ~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~  125 (316)
                      +++ ++-..++.|.+.|..+.+.              ...+..+ ...-..+.++|||+++.. +.|+.|.++|+.+.  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~--------------~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--   68 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKV--------------VARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--   68 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SE--------------EEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred             cEEEEEecCCCEEEEEECCCCeE--------------EEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence            344 4556789999999998873              2223122 222345779999995555 57999999999988  


Q ss_pred             CCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-cCCeEEEEeccCCeeEEEeecC-------ccce
Q 021160          126 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV  197 (316)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~-------~~~v  197 (316)
                                    +.+..+.....   ..++++ +++|+++++++ ..+.+.++|.++.+++..++..       ..++
T Consensus        69 --------------~~v~~i~~G~~---~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv  130 (369)
T PF02239_consen   69 --------------KVVATIKVGGN---PRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV  130 (369)
T ss_dssp             --------------SEEEEEE-SSE---EEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred             --------------cEEEEEecCCC---cceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence                          67777665432   688998 99999998776 5899999999999999887643       3467


Q ss_pred             EEEEEcCCCCeEEEEeCC-CcEEEecCCCCCCCCC-CCCcccceeeeecCCCCceeEE-ecCCCeEEEEEecccCcce
Q 021160          198 NQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRRQTLA  272 (316)
Q Consensus       198 ~~~~~~p~~~~l~s~~~d-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s-~~~d~~~~~w~~~~~~~~~  272 (316)
                      ..+..+|..+.++.+-.| +.|.+-|....+.... .-..........+.+++++++. ...+..+-++|.++++...
T Consensus       131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            788888888866655544 7777777665431110 0011122233447777777654 5567788899988764443

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=2.6e-07  Score=77.84  Aligned_cols=214  Identities=16%  Similarity=0.194  Sum_probs=137.7

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEE-----EecCCcEEEEeCcCCcccCCCCCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAV-----GGSDEYARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~-----g~~dg~v~~wd~~~~~~~~~~~~~   76 (316)
                      +.|++|++...+.. .-.+           |...|+.+.++|. .+..+|+     ++.-+.|+||.+......      
T Consensus       146 nev~f~~~~~f~~~-~~kl-----------~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~------  207 (566)
T KOG2315|consen  146 NEVQFYDLGSFKTI-QHKL-----------SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH------  207 (566)
T ss_pred             ceEEEEecCCccce-eeee-----------eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc------
Confidence            56788888764321 1111           4668999999997 3345554     355678999988733211      


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCC-eE--EEec-CC---------cEEEEEcCCCCCCCCccCCccccccCCCcc
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSE-LL--ISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQ  143 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l--~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  143 (316)
                      .++   ..+.+.   ...=..+.|++-|. +|  +++. |.         ++++++++..                ..  
T Consensus       208 ~~~---a~ksFF---kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s~--  263 (566)
T KOG2315|consen  208 QPV---ANKSFF---KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----------------SV--  263 (566)
T ss_pred             chh---hhcccc---ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----------------eE--
Confidence            011   111111   12234678998886 22  2332 44         4888887732                12  


Q ss_pred             eeeCC-cCCceeeeEEEecCCCcEEEE--eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---Cc
Q 021160          144 VYSGH-RNSQTVKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KT  217 (316)
Q Consensus       144 ~~~~~-~~~~~i~~~~~~~~~~~~l~~--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~  217 (316)
                      .+... .  .+|.++.| ++++.-+++  |-.-..+.|||++ ++++..+.  .++-+++-|+|.|++++.+|.+   |.
T Consensus       264 ~V~L~k~--GPVhdv~W-~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~  337 (566)
T KOG2315|consen  264 SVPLLKE--GPVHDVTW-SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD  337 (566)
T ss_pred             EEecCCC--CCceEEEE-CCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc
Confidence            22222 3  34999999 888865544  4557789999997 77777664  4566889999999998887754   78


Q ss_pred             EEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC------CCeEEEEEecc
Q 021160          218 VKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP------DVIMHVLRLQR  267 (316)
Q Consensus       218 i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~~~~w~~~~  267 (316)
                      |-|||+...+ +..+. .  .-.....|+++++++++++.      |+.+++|+...
T Consensus       338 mEvwDv~n~K~i~~~~-a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  338 MEVWDVPNRKLIAKFK-A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             eEEEeccchhhccccc-c--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            9999999866 43333 2  22345559999999988665      58889998653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.03  E-value=5.5e-09  Score=79.55  Aligned_cols=147  Identities=15%  Similarity=0.206  Sum_probs=94.6

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec------CCcEEEEEcC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKN  121 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------d~~i~iwd~~  121 (316)
                      +-++++..||.+.+++.+.-..             ....+...|.+ -.+.++...++++.++.      -+..+.|+++
T Consensus       102 t~V~~~~~dg~~~v~s~~~~~~-------------~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDKDLA-------------LMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             CceEecCCCceEEEEechHHHh-------------hhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccc
Confidence            5799999999999999875210             00111011111 11223334455555532      3456677765


Q ss_pred             CCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EEEeecCccceEEE
Q 021160          122 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQL  200 (316)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~  200 (316)
                      ..                +..  ...+.....+.+++-++.....+++|++||.+-+||.+.... ...+..|+.+++.+
T Consensus       168 p~----------------~t~--~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV  229 (319)
T KOG4714|consen  168 PI----------------KTL--IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEV  229 (319)
T ss_pred             cc----------------ccc--cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhe
Confidence            43                111  111222223788887444566778899999999999987643 34457899999999


Q ss_pred             EEcCCCC-eEEEEeCCCcEEEecCCCC
Q 021160          201 EPHPHIP-MFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       201 ~~~p~~~-~l~s~~~d~~i~iwd~~~~  226 (316)
                      -|||..+ .|+++++||.+..||..+.
T Consensus       230 ~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  230 HFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             eccCCCchheeEecCCCcEEEEcCCCc
Confidence            9999765 4999999999999998763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=3.4e-07  Score=75.70  Aligned_cols=245  Identities=9%  Similarity=0.015  Sum_probs=140.2

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---------cCCcEEEEeCcCCcccC
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---------SDEYARVYDIRKCHWYS   71 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---------~dg~v~~wd~~~~~~~~   71 (316)
                      |.|.|.|.|..+.+....+......            ..+ ++|++..++++.+         .+..|.+||..+.+...
T Consensus        25 ~~~~v~ViD~~~~~v~g~i~~G~~P------------~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~   91 (352)
T TIGR02658        25 ATTQVYTIDGEAGRVLGMTDGGFLP------------NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA   91 (352)
T ss_pred             cCceEEEEECCCCEEEEEEEccCCC------------cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence            4588999999887776666654222            124 9999955555556         68999999999998554


Q ss_pred             CCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--c-CCcEEEEEcCCCCCCC----CccCCccc---------
Q 021160           72 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N-DELVYLFEKNMGLGPS----PLSLSPED---------  135 (316)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~----~~~~~~~~---------  135 (316)
                      ++..+...+..        ....-..++++|+|++|...  . +..|.+.|+.++.-..    +.....+.         
T Consensus        92 ~i~~p~~p~~~--------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~  163 (352)
T TIGR02658        92 DIELPEGPRFL--------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH  163 (352)
T ss_pred             EEccCCCchhh--------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE
Confidence            33222110000        01223477899999966653  3 8899999998875100    00000000         


Q ss_pred             cccCCCcc---------------eeeCCcCCceeee-EEEecCCCcEEEEeccCCeEEEEeccC-----CeeEEEeec--
Q 021160          136 LQKREEPQ---------------VYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKG-----GKLVRLMVG--  192 (316)
Q Consensus       136 ~~~~~~~~---------------~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~v~~wd~~~-----~~~~~~~~~--  192 (316)
                      ........               .+.+....  +.. -.|...++.++....+ |.|.+.|+..     .+....+..  
T Consensus       164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~--v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~  240 (352)
T TIGR02658       164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY--LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE  240 (352)
T ss_pred             eecCceEEEEecCCCceEEeeeeeecCCccc--cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence            00000000               00000000  000 0221237777777666 9999999543     333333221  


Q ss_pred             -----CccceEEEEEcCCCCeEEEEe----------CCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCc-eeEEec
Q 021160          193 -----DRHVVNQLEPHPHIPMFATCG----------IEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLT  255 (316)
Q Consensus       193 -----~~~~v~~~~~~p~~~~l~s~~----------~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~s~~  255 (316)
                           ..+.+.-++++|+++.+....          ..+.|.++|..+.+ +..+. -...+..+. +++++. ++....
T Consensus       241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~ia-vS~Dgkp~lyvtn  318 (352)
T TIGR02658       241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSIN-VSQDAKPLLYALS  318 (352)
T ss_pred             cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEE-ECCCCCeEEEEeC
Confidence                 234455699999998866532          12479999998887 44433 223444455 777777 666554


Q ss_pred             -CCCeEEEEEecccCcc
Q 021160          256 -PDVIMHVLRLQRRQTL  271 (316)
Q Consensus       256 -~d~~~~~w~~~~~~~~  271 (316)
                       .++.+.+.|..+++..
T Consensus       319 ~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       319 TGDKTLYIFDAETGKEL  335 (352)
T ss_pred             CCCCcEEEEECcCCeEE
Confidence             6788999998887554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=4.3e-07  Score=78.02  Aligned_cols=179  Identities=12%  Similarity=0.074  Sum_probs=108.4

Q ss_pred             ceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e-
Q 021160           36 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-  110 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-  110 (316)
                      ......|+|++...++..+.   +..|.++|+.+++.               ..+ ....+......|+|||+.++. . 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------~~l-t~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------EKI-ASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------EEE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence            56789999999433554333   35688899987752               111 112344556789999984443 2 


Q ss_pred             c--CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-C--eEEEEeccCCe
Q 021160          111 N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGK  185 (316)
Q Consensus       111 ~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~~  185 (316)
                      .  +..|+++|+.++                . .+.+..+...  .....| +|||+.|+..++. +  .|++.|+.+++
T Consensus       253 ~~g~~~Iy~~dl~~g----------------~-~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        253 PKGQPDIYLYDTNTK----------------T-LTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cCCCcEEEEEECCCC----------------c-EEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            2  456888888766                2 2333333221  234467 9999988776642 2  68888888777


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCC---------CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      ..+....  +. ....|+|+|+.|+..+..         ..|.+.|+.++....+....  ......|+++++.++-.+
T Consensus       313 ~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        313 VEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             eEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEE
Confidence            5443321  11 124899999997766543         26788888887755554321  112233677776554433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.01  E-value=1.4e-09  Score=59.86  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=36.9

Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160          184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd  222 (316)
                      ++++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.00  E-value=1.3e-08  Score=82.01  Aligned_cols=162  Identities=9%  Similarity=0.052  Sum_probs=103.5

Q ss_pred             cEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc
Q 021160           94 HITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  172 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  172 (316)
                      ....+..++.+++++.+ +++...++++.....            ..+....+.....+..+..+.. +......-..++
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------------~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK------------GAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCC------------cceeeeEeecccCcceeeeeec-cceEEEEeecCC
Confidence            34456677888888886 677777887766510            1123333333333222333333 222222222344


Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCce
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHS  250 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  250 (316)
                      ...+.+|....+. ...+.+|-+.++.++|+||+++|+++..|..|||-...... +..+ .+|..-|-.+.  -.++..
T Consensus       131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is--l~~~~~  207 (390)
T KOG3914|consen  131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS--LTDNYL  207 (390)
T ss_pred             ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee--eccCce
Confidence            4455555555444 34455899999999999999999999999999997766554 4444 35777664444  224556


Q ss_pred             eEEecCCCeEEEEEecccCcc
Q 021160          251 RITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       251 ~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +++++.|+++++||+.++..+
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeecCCCCcEEEEecccCCcc
Confidence            899999999999999988665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=4.6e-08  Score=75.91  Aligned_cols=195  Identities=12%  Similarity=0.033  Sum_probs=123.8

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCc
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDEL  114 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~  114 (316)
                      ..++.|++.+ ..++++..+|.+.+-+.....+             ...+..+.|.-.++..+|+.... ++.+| .|+.
T Consensus       124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~l-------------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~  189 (339)
T KOG0280|consen  124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVL-------------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS  189 (339)
T ss_pred             eeEEEeeccC-ceEEEEcCCCcEEEEecceeee-------------eecccccccceeeeeeecccCCCceEEecCCCce
Confidence            3467788888 7788888999998555544331             11112367888899999987664 66664 7999


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCC-cceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEeec
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVG  192 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~  192 (316)
                      +.-||++.+.               +. .+.-+.|..+  |.++.-.+|.+.+|++|+.|-.|++||.+ -++++..-. 
T Consensus       190 l~~~D~R~p~---------------~~i~~n~kvH~~G--V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-  251 (339)
T KOG0280|consen  190 LSCWDIRIPK---------------TFIWHNSKVHTSG--VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-  251 (339)
T ss_pred             EEEEEecCCc---------------ceeeecceeeecc--eEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence            9999998441               11 1223456655  88888767789999999999999999998 466665443 


Q ss_pred             CccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC------CCCCCCCcccceeeeecCCCCceeEEec-CCCeEE-EE
Q 021160          193 DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMH-VL  263 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~-~w  263 (316)
                      -.+.|+.+.++|.-.. ++.++.-.-.+|-+...+.      ......|..-.+...|... ...+++++ .|..++ +|
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc-cceeeeeeccccceeeee
Confidence            2378999999996542 2233333345666555433      1222344444555554222 34556544 344433 55


Q ss_pred             E
Q 021160          264 R  264 (316)
Q Consensus       264 ~  264 (316)
                      -
T Consensus       331 l  331 (339)
T KOG0280|consen  331 L  331 (339)
T ss_pred             e
Confidence            3

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=4.5e-06  Score=67.02  Aligned_cols=229  Identities=14%  Similarity=0.158  Sum_probs=133.7

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec---CCcEEEEeCcC--CcccCCCCCCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDT   77 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~--~~~~~~~~~~~   77 (316)
                      .-|++|++.+.+........ .       .+.+..+-|+|+|++ +.|.++..   +|.|..|.++.  +++.       
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~-v-------~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------   79 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQL-V-------AELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT-------   79 (346)
T ss_pred             CceEEEEEeCcccccchhhh-c-------cccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-------
Confidence            45789999854432111111 0       135678899999998 67777643   58888888764  4421       


Q ss_pred             CceecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC-----
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----  150 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  150 (316)
                          +.-.....+  .+-.-++++++|++++++  ..+.|.++-++.......            ..+.+. |..     
T Consensus        80 ----~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~------------~v~~~~-h~g~~p~~  140 (346)
T COG2706          80 ----FLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP------------VVQVVK-HTGSGPHE  140 (346)
T ss_pred             ----EeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc------------ceeeee-cCCCCCCc
Confidence                011111122  233778999999987775  489999999865311100            111111 111     


Q ss_pred             ---CceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEE-EEeCCCcEEEec
Q 021160          151 ---SQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWA  222 (316)
Q Consensus       151 ---~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd  222 (316)
                         ...+....+ .|+++++++... --.|.+|++..|++...-.   ........|+|||++++.. ..--+++|.+|.
T Consensus       141 rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~  219 (346)
T COG2706         141 RQESPHVHSANF-TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE  219 (346)
T ss_pred             cccCCccceeee-CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE
Confidence               011455666 999999988754 3468999999877543221   2235678899999999854 444789999998


Q ss_pred             CCC--CCCC------CCCCC-ccc-ceeeeecCCCCceeEEecC-CCeEEEEEecc
Q 021160          223 PMP--TDFP------PLPDN-AEK-IMKANKQGREDHSRITLTP-DVIMHVLRLQR  267 (316)
Q Consensus       223 ~~~--~~~~------~~~~~-~~~-~~~~~~~~~~~~~~~s~~~-d~~~~~w~~~~  267 (316)
                      ...  +++.      +++.. ... -......++++++|.+... ...|-++.+..
T Consensus       220 y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         220 YNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            776  3322      22211 111 1122235567777655443 34555665544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.95  E-value=3.4e-09  Score=91.71  Aligned_cols=204  Identities=11%  Similarity=0.146  Sum_probs=143.4

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC---eEEEe
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY  110 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~  110 (316)
                      .+++.++.++|.| +-++.++.-| +.+.|+...-.             .+..+.....-.+-.+.|+|...   .+++.
T Consensus        24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~-------------ppr~l~h~tpw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFT-------------PPRWLHHITPWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             cCcccceeecccc-chhhhhhhcC-eEEEeccCCCC-------------CceeeeccCcchhcceecccCCCCceeEEec
Confidence            4578899999999 7888887766 45667764320             12222122233466788888653   66666


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~  189 (316)
                      +...-.+|++....             ....-..+-+|...  ++.+.|+......+++++-|..+..||+++.. ++..
T Consensus        89 s~qkaiiwnlA~ss-------------~~aIef~lhghsra--itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys  153 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA--ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS  153 (1081)
T ss_pred             CcchhhhhhhhcCC-------------ccceEEEEecCccc--eeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence            77778899986542             11223344566644  99999966667789999999999999998754 4555


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ...-......++|+-..+.+...+..+.|++||.+.+.  +..+.+|...+..+.....--..+++.+.|++++.|+-.+
T Consensus       154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            54444566789998877666666777899999999876  7777777777765554444456788999999999999654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.92  E-value=3.1e-06  Score=71.26  Aligned_cols=204  Identities=13%  Similarity=0.118  Sum_probs=119.7

Q ss_pred             ceEEEEECCCCCcEEEEEec----CCcEEEEeCcCC--cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           36 RLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~----dg~v~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      ....++++|++ ++|.+...    ++.|..|.+...  ++.            ..... .........++++|++++|+.
T Consensus        38 ~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~-~~~g~~p~~i~~~~~g~~l~v  103 (345)
T PF10282_consen   38 NPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSV-PSGGSSPCHIAVDPDGRFLYV  103 (345)
T ss_dssp             SECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEE-EESSSCEEEEEECTTSSEEEE
T ss_pred             CCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeee-ccCCCCcEEEEEecCCCEEEE
Confidence            45678999998 67766654    678999998753  321            11111 112234457889999997766


Q ss_pred             e--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee--C------CcCCceeeeEEEecCCCcEEEEec-cCCeEEE
Q 021160          110 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFI  178 (316)
Q Consensus       110 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~  178 (316)
                      +  .++.|.++++.....          +.  .....+.  +      ........++.+ +|+++++++.. ....|++
T Consensus       104 any~~g~v~v~~l~~~g~----------l~--~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen  104 ANYGGGSVSVFPLDDDGS----------LG--EVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EETTTTEEEEEEECTTSE----------EE--EEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEE
T ss_pred             EEccCCeEEEEEccCCcc----------cc--eeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCEEEE
Confidence            4  599999999976310          00  0111111  0      011123678888 99999887754 3557999


Q ss_pred             EeccCCe--eE--EEee-cCccceEEEEEcCCCCeEE-EEeCCCcEEEecCC--CCC------CCCCCC-Cc-ccceeee
Q 021160          179 WKKKGGK--LV--RLMV-GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPM--PTD------FPPLPD-NA-EKIMKAN  242 (316)
Q Consensus       179 wd~~~~~--~~--~~~~-~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~--~~~------~~~~~~-~~-~~~~~~~  242 (316)
                      |++....  +.  ..+. ........++|+|+++++. ..-.++.|.++++.  .+.      +..++. .. .......
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            9987654  32  2222 2335678999999999854 44567889999887  322      112211 11 1012233


Q ss_pred             ecCCCCcee-EEecCCCeEEEEEec
Q 021160          243 KQGREDHSR-ITLTPDVIMHVLRLQ  266 (316)
Q Consensus       243 ~~~~~~~~~-~s~~~d~~~~~w~~~  266 (316)
                      ..+++++++ ++......|.++++.
T Consensus       251 ~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEecCCCEEEEEeccCCEEEEEEEe
Confidence            367777765 455567889999983

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.9e-07  Score=80.14  Aligned_cols=176  Identities=7%  Similarity=-0.007  Sum_probs=102.9

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCCCcee
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.++|+.+.+..++...            .+......|+|+|..++++.+.+  ..|.++|+.+++..           
T Consensus       214 ~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-----------  270 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-----------  270 (419)
T ss_pred             EEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-----------
Confidence            466777766655444321            33456788999995455555444  45777787766421           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEec--CC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                          .+ ..+........|+|||+.|+..+  .+  .|++.|+.++                ...+ +.....    ...
T Consensus       271 ----~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g----------------~~~r-lt~~g~----~~~  324 (419)
T PRK04043        271 ----QI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG----------------SVEQ-VVFHGK----NNS  324 (419)
T ss_pred             ----Ec-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC----------------CeEe-CccCCC----cCc
Confidence                11 11122233457999998555432  22  6888888776                2212 221111    123


Q ss_pred             EEecCCCcEEEEeccC---------CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCC
Q 021160          158 NFFGPNDEYVMSGSDC---------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMP  225 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~d---------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~  225 (316)
                      .| +|+|++|+..+..         ..|.+.|+.+++. ..+... .......|+|+|+.++....++   .+.+.++..
T Consensus       325 ~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        325 SV-STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             eE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            67 9999988776643         3688889887764 344332 2333588999999876554332   366667766


Q ss_pred             CCCCCC
Q 021160          226 TDFPPL  231 (316)
Q Consensus       226 ~~~~~~  231 (316)
                      .....+
T Consensus       402 ~~~~~l  407 (419)
T PRK04043        402 NKSFLF  407 (419)
T ss_pred             CeeEEe
Confidence            544334

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.90  E-value=3.9e-08  Score=77.00  Aligned_cols=219  Identities=14%  Similarity=0.149  Sum_probs=134.2

Q ss_pred             cceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCC--C--------CCCCc-----------------eecccc-
Q 021160           35 IRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPI--S--------SDTPV-----------------DTFCPR-   85 (316)
Q Consensus        35 ~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~--~--------~~~~~-----------------~~~~~~-   85 (316)
                      ..|+.+.|.. .+...++..+.|.+|++|.+....+....  +        ...|+                 -...+. 
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            4588888864 44457788889999999998765321100  0        01111                 111111 


Q ss_pred             cccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160           86 HLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  165 (316)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  165 (316)
                      .....|...|.++.|+.+.+.++++.|-.|.+|+++...    .++.+-+++..    .+..-.  ..|++..|++....
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D----~sFnIVDiKP~----nmeeLt--eVItSaeFhp~~cn  235 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID----GSFNIVDIKPH----NMEELT--EVITSAEFHPEMCN  235 (460)
T ss_pred             eccccceeEeeeeeecCchheeeeccceeeeeccccccC----CceEEEeccCc----cHHHHH--HHHhhcccCHhHcc
Confidence            122678889999999999999999999999999987541    22222221111    011111  12778888444566


Q ss_pred             EEEEeccCCeEEEEeccCCeeE------E----------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--
Q 021160          166 YVMSGSDCGHLFIWKKKGGKLV------R----------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--  227 (316)
Q Consensus       166 ~l~~~~~dg~v~~wd~~~~~~~------~----------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--  227 (316)
                      .+.-.+..|.|++-|++...+.      .          .+.+-...|..+.|+|+|+++++-.. -+|+|||++..+  
T Consensus       236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p  314 (460)
T COG5170         236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP  314 (460)
T ss_pred             eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence            7777788999999999843321      1          11112346888999999999988753 589999998655  


Q ss_pred             CCCCCCCc------------ccceee--eecCCCCceeEEecCCCeEEEEE
Q 021160          228 FPPLPDNA------------EKIMKA--NKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       228 ~~~~~~~~------------~~~~~~--~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +.+++-|.            +.++..  ..++.+...+++|+......++-
T Consensus       315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            55554332            222211  11344556666777666655554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.89  E-value=5.9e-06  Score=69.58  Aligned_cols=235  Identities=11%  Similarity=0.138  Sum_probs=133.7

Q ss_pred             ceeeEEEEeeCC--CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcC-CcccCCCCCCC
Q 021160            2 VLFNMLFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~-~~~~~~~~~~~   77 (316)
                      .|.|..|++...  +...+-....         .......++++|++ ++++++. .+|.|.++++.. +.+...     
T Consensus        61 ~g~v~~~~i~~~~g~L~~~~~~~~---------~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~-----  125 (345)
T PF10282_consen   61 SGGVSSYRIDPDTGTLTLLNSVPS---------GGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEV-----  125 (345)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEEE---------SSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEE-----
T ss_pred             CCCEEEEEECCCcceeEEeeeecc---------CCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCccccee-----
Confidence            357777877764  2222211110         12345679999999 6776665 589999999986 332110     


Q ss_pred             Cceecccc--cc--cCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC
Q 021160           78 PVDTFCPR--HL--IGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  151 (316)
Q Consensus        78 ~~~~~~~~--~~--~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (316)
                       ...+...  ..  .........++.++|++++++..  ....|.+|++......         +   .....+..... 
T Consensus       126 -~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~---------l---~~~~~~~~~~G-  191 (345)
T PF10282_consen  126 -VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK---------L---TPVDSIKVPPG-  191 (345)
T ss_dssp             -EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T---------E---EEEEEEECSTT-
T ss_pred             -eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce---------E---EEeeccccccC-
Confidence             0000000  00  01123457889999999966653  4668999999765100         0   01122222221 


Q ss_pred             ceeeeEEEecCCCcEEEEec-cCCeEEEEecc--CCee--EEEeec----C--ccceEEEEEcCCCCeEEEEe-CCCcEE
Q 021160          152 QTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK--GGKL--VRLMVG----D--RHVVNQLEPHPHIPMFATCG-IEKTVK  219 (316)
Q Consensus       152 ~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~--~~~~--~~~~~~----~--~~~v~~~~~~p~~~~l~s~~-~d~~i~  219 (316)
                      .....+.| +|+++++++.. .++.|.++++.  .++.  +..+..    .  ......++++|++++|..+. .+..|.
T Consensus       192 ~GPRh~~f-~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  192 SGPRHLAF-SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             SSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCCcEEEE-cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            23789999 89999886655 48889999988  4432  223321    1  12577899999999965544 667899


Q ss_pred             EecCCC--CCCCCC---CCCcccceeeeecCCCCceeEEe-cCCCeEEEEEecc
Q 021160          220 LWAPMP--TDFPPL---PDNAEKIMKANKQGREDHSRITL-TPDVIMHVLRLQR  267 (316)
Q Consensus       220 iwd~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~w~~~~  267 (316)
                      +|++..  +.+..+   .........++ .++++++++.+ -.++.|.++++..
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~-~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGKFPRHFA-FSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSSSEEEEE-E-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCCCceEEEEEEeCCCCCccEEE-EeCCCCEEEEEecCCCeEEEEEEeC
Confidence            999843  332221   11112123333 56777776654 4678999998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=9.1e-09  Score=81.46  Aligned_cols=134  Identities=16%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCe-EEEec
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSEL-LISYN  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-l~s~~  111 (316)
                      ++.|.++.|...+ +++..|..+|.|..+|++.+.--       ..  .+...  --|...|+++..-. ++.+ ++++.
T Consensus       252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG-------~~--~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M  319 (425)
T KOG2695|consen  252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG-------NG--WCAQR--LYHDSSVTSLQILQFSQQKLMASDM  319 (425)
T ss_pred             chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC-------CC--cceEE--EEcCcchhhhhhhccccceEeeccC
Confidence            5678999999888 89999999999999999866210       00  01111  24778899988776 5554 45568


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      +|+|.+||++.-+             ..+-++.+.||.+...-.-+-. .+....++++++|-..+||.++.|.++.+++
T Consensus       320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence            9999999998751             1123788999987633333333 6677889999999999999999999998886


Q ss_pred             cC
Q 021160          192 GD  193 (316)
Q Consensus       192 ~~  193 (316)
                      ..
T Consensus       386 f~  387 (425)
T KOG2695|consen  386 FP  387 (425)
T ss_pred             CC
Confidence            43

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.86  E-value=2.8e-07  Score=73.17  Aligned_cols=177  Identities=14%  Similarity=0.220  Sum_probs=124.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d  112 (316)
                      +.+++++++.+.. ..|++|-..|++.-+.+...-           ...........|...+..+-|+-..+.+++ +.|
T Consensus        68 P~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedf-----------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d  135 (404)
T KOG1409|consen   68 PSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDF-----------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD  135 (404)
T ss_pred             CCCceEeeeeccc-eEEEEEEecceEEEEEhhhhh-----------hhcchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence            5689999999987 899999999999988875321           000122223578888888888877776666 455


Q ss_pred             CcEEEEEcCCCCC-----------CCCccCCc--------------cccccCCCcceeeCCcCCceeeeEEEecCCCcEE
Q 021160          113 ELVYLFEKNMGLG-----------PSPLSLSP--------------EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  167 (316)
Q Consensus       113 ~~i~iwd~~~~~~-----------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  167 (316)
                      ..+.---.+.+..           +.+.-+..              -......++.++.+|...  +.+++| .+....+
T Consensus       136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~L  212 (404)
T KOG1409|consen  136 KQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRLL  212 (404)
T ss_pred             cceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcEE
Confidence            5544333332210           00000000              002223456677889877  999999 8999999


Q ss_pred             EEeccCCeEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          168 MSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       168 ~~~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      .+|..|..+.+||+--.+ ....+.+|...|..++.-+.-+.+.+++.||.|.+|+...
T Consensus       213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999999999999986433 2456678999999998888888899999999999999764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=9.9e-09  Score=81.26  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=109.8

Q ss_pred             eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-
Q 021160          106 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-  184 (316)
Q Consensus       106 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-  184 (316)
                      .++.|.+..|.+-|++++                 ..+.|.. .  ..|.++.| ...++++..|+.+|.|..+|++.. 
T Consensus       227 hfs~G~sqqv~L~nvetg-----------------~~qsf~s-k--sDVfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETG-----------------HQQSFQS-K--SDVFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             eecccccceeEEEEeecc-----------------ccccccc-c--hhHHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence            344467888888898887                 4455552 2  23888888 777899999999999999999864 


Q ss_pred             ----eeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC----CCCCCCCcccceee-eecCCCCceeEEe
Q 021160          185 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKA-NKQGREDHSRITL  254 (316)
Q Consensus       185 ----~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~s~  254 (316)
                          .+...+ -|.+.|+++..-. ++++|++.+.+|+|++||.+..+    +.+..+|....... +...++...++++
T Consensus       286 qG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  286 QGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             cCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence                333444 3888899988766 67788888999999999998654    55666776554222 2234567788999


Q ss_pred             cCCCeEEEEEecccCcceeE
Q 021160          255 TPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       255 ~~d~~~~~w~~~~~~~~~~~  274 (316)
                      +.|...|+|.+..++.+...
T Consensus       365 GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             cCeeEEEEEecccCceeecc
Confidence            99999999999988776443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=3.1e-07  Score=79.78  Aligned_cols=233  Identities=12%  Similarity=0.142  Sum_probs=136.4

Q ss_pred             ceeeEEEEeeCCCcceEEE----eccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFY----CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~----~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      +|.++|..+.+.....-..    ..+..-+...-||+..|.-+.|+.+. +.|-+...+|.|.+|-+-.+++        
T Consensus        35 dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW--------  105 (1189)
T KOG2041|consen   35 DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSW--------  105 (1189)
T ss_pred             cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeecccH--------
Confidence            5777777776543211111    11111111224899999999999987 7888889999999999998875        


Q ss_pred             CceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                           +..-+-....+-|.+++|+.+|..++. ..||.|.+=.++...               -.-+.+++..    ...
T Consensus       106 -----~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---------------IwgKeLkg~~----l~h  161 (1189)
T KOG2041|consen  106 -----CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---------------IWGKELKGQL----LAH  161 (1189)
T ss_pred             -----HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---------------ecchhcchhe----ccc
Confidence                 333333556778999999999985555 578888766555431               0001111111    222


Q ss_pred             EEEecC-------------------------------------------------------------CCcEEEEeccCCe
Q 021160          157 VNFFGP-------------------------------------------------------------NDEYVMSGSDCGH  175 (316)
Q Consensus       157 ~~~~~~-------------------------------------------------------------~~~~l~~~~~dg~  175 (316)
                      +.| ++                                                             +...++.+-.+|.
T Consensus       162 v~w-s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr  240 (1189)
T KOG2041|consen  162 VLW-SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR  240 (1189)
T ss_pred             eee-cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence            233 33                                                             4445555555555


Q ss_pred             EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---------cEEEecCCCCCCCCCCCCcccceeeeecCC
Q 021160          176 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------TVKLWAPMPTDFPPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       176 v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  246 (316)
                      +.+-.-........+.. .-.+..+.|+|+|..||.++.|.         .|.+|..-+.-..++......+..+.|...
T Consensus       241 ~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             ehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCC
Confidence            54443222111111111 13577889999999999888653         566676655555666656666666664333


Q ss_pred             CCceeEEecCCCeEEEEEecccCcc
Q 021160          247 EDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       247 ~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                        .+.++...|+.+.+-+++..-+.
T Consensus       320 --gLriA~AvdsfiyfanIRP~ykW  342 (1189)
T KOG2041|consen  320 --GLRIAIAVDSFIYFANIRPEYKW  342 (1189)
T ss_pred             --ceEEEEEecceEEEEeecccceE
Confidence              24445555666666666554333

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.86  E-value=4.4e-07  Score=69.77  Aligned_cols=146  Identities=10%  Similarity=-0.034  Sum_probs=100.6

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc--ccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN--IHITGLAYSNTSELLIS-YNDELVYLFEKNMGL  124 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~  124 (316)
                      .-+..++.|.++++.++..+..              ...   -|.  -.+.+++++++++++++ +....|..|.++...
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~--------------~~~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s  191 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSN--------------KFA---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES  191 (344)
T ss_pred             cceeeccCCcceeEEEEecCcc--------------cce---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence            3566778888888888875531              111   122  23788999999999888 677889999887641


Q ss_pred             CCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EE----EeecCccceE
Q 021160          125 GPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR----LMVGDRHVVN  198 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~----~~~~~~~~v~  198 (316)
                                    ........ ...+.  -.+..| +.....+|+++.||++.|||++.-.. ..    +-+.|.+.+.
T Consensus       192 --------------ey~~~~~~a~t~D~--gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R  254 (344)
T KOG4532|consen  192 --------------EYIENIYEAPTSDH--GFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFR  254 (344)
T ss_pred             --------------ceeeeeEecccCCC--ceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceE
Confidence                          02223222 22222  466777 88888999999999999999886432 22    2245889999


Q ss_pred             EEEEcCCCCe--EEEEeCCCcEEEecCCCCC
Q 021160          199 QLEPHPHIPM--FATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       199 ~~~~~p~~~~--l~s~~~d~~i~iwd~~~~~  227 (316)
                      .+.|+|.|..  |...-.-+.+.+-|+++..
T Consensus       255 ~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  255 VCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            9999997765  3333345678999998875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.85  E-value=1.3e-06  Score=68.07  Aligned_cols=167  Identities=15%  Similarity=0.229  Sum_probs=104.1

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-------CeEEE
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLIS  109 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~s  109 (316)
                      =.-++|+|++ .+||.+...|+|++||+....+.....    ...     ....-...|..+.|.+..       ++|+.
T Consensus        46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p----~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi  115 (282)
T PF15492_consen   46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPP----AMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVI  115 (282)
T ss_pred             heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCc----ccc-----cCCccccceeeeEeeccccccccceeEEEE
Confidence            4579999999 899999999999999998654321110    000     112224566677665432       36666


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCccee--eC-CcCCceeeeEEEecCCCcEEEEeccCC-----------e
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SG-HRNSQTVKGVNFFGPNDEYVMSGSDCG-----------H  175 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg-----------~  175 (316)
                      ..+|.++-|-+..+..           +..+....|  .. +..+  |.++.| +|..++|+.|+...           -
T Consensus       116 ~Y~G~L~Sy~vs~gt~-----------q~y~e~hsfsf~~~yp~G--i~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~G  181 (282)
T PF15492_consen  116 NYRGQLRSYLVSVGTN-----------QGYQENHSFSFSSHYPHG--INSAVY-HPKHRLLLVGGCEQNQDGMSKASSCG  181 (282)
T ss_pred             eccceeeeEEEEcccC-----------CcceeeEEEEecccCCCc--eeEEEE-cCCCCEEEEeccCCCCCccccccccC
Confidence            6788877766532200           000122222  22 2434  999998 88888887776411           2


Q ss_pred             EEEEeccCCeeE--------------------EEe---------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          176 LFIWKKKGGKLV--------------------RLM---------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       176 v~~wd~~~~~~~--------------------~~~---------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      +.-|.+-++.+.                    ..+         ......|..|..||++..||+...+|.|.+|++..-
T Consensus       182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            445553322110                    000         112467899999999999999999999999999876


Q ss_pred             C
Q 021160          227 D  227 (316)
Q Consensus       227 ~  227 (316)
                      .
T Consensus       262 ~  262 (282)
T PF15492_consen  262 R  262 (282)
T ss_pred             h
Confidence            5

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.82  E-value=2.7e-06  Score=70.48  Aligned_cols=212  Identities=12%  Similarity=0.092  Sum_probs=128.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-c-CCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-S-DEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~-dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      .+.|.+||+.+.+....+.....++..    ....-..++++|+| +++++.. . +..|.+.|+.+++...++..+...
T Consensus        76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~----~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~  150 (352)
T TIGR02658        76 TDYVEVIDPQTHLPIADIELPEGPRFL----VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY  150 (352)
T ss_pred             CCEEEEEECccCcEEeEEccCCCchhh----ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc
Confidence            367999999998877666653221000    01123478999999 6676554 4 799999999999987765433322


Q ss_pred             eeccccc------ccCC----------CcccEEEE--------------EEcc-CCCeEEEecCCcEEEEEcCCCCCCCC
Q 021160           80 DTFCPRH------LIGK----------NNIHITGL--------------AYSN-TSELLISYNDELVYLFEKNMGLGPSP  128 (316)
Q Consensus        80 ~~~~~~~------~~~~----------~~~~i~~~--------------~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~  128 (316)
                      ..+....      ...+          ........              .|.+ +|+.+..+..|+|.+.|+.....   
T Consensus       151 ~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~---  227 (352)
T TIGR02658       151 HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDA---  227 (352)
T ss_pred             EEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcc---
Confidence            1111000      0000          00001111              2334 67766665559999999654310   


Q ss_pred             ccCCccccccCCCcceeeCC-----cCCceeeeEEEecCCCcEEEEec----------cCCeEEEEeccCCeeEEEeecC
Q 021160          129 LSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                              ........+...     -.+..+.-+++ +++++.++...          ..+.|.++|..+++.+..+.. 
T Consensus       228 --------~~~~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-  297 (352)
T TIGR02658       228 --------KFLPAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-  297 (352)
T ss_pred             --------eecceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence                    000111111110     00111344888 88888887743          125799999999999998874 


Q ss_pred             ccceEEEEEcCCCC-eEEEEe-CCCcEEEecCCCCC-CCCC
Q 021160          194 RHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTD-FPPL  231 (316)
Q Consensus       194 ~~~v~~~~~~p~~~-~l~s~~-~d~~i~iwd~~~~~-~~~~  231 (316)
                      ...+..++++|+++ .|.+.+ .++.|.+.|..+.+ +.++
T Consensus       298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            34788999999999 766555 67889999998886 4444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.81  E-value=6.2e-08  Score=73.98  Aligned_cols=126  Identities=13%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-C-eEEEecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-E-LLISYNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~s~~d~  113 (316)
                      .|.+++-+|..++++++|+.||.+.+||.+...              .+..++..|+.+|+.+-|+|.. . +|.++.||
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc--------------chHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence            499999999887899999999999999999765              3444458899999999999976 3 66667899


Q ss_pred             cEEEEEcCCCCC---CCCccCCccccccCCCcce---eeCCcC-C-ceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160          114 LVYLFEKNMGLG---PSPLSLSPEDLQKREEPQV---YSGHRN-S-QTVKGVNFFGPNDEYVMSGSDCGHLFIWK  180 (316)
Q Consensus       114 ~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~-~-~~i~~~~~~~~~~~~l~~~~~dg~v~~wd  180 (316)
                      .+..||..+..-   +.....++| +..- +++.   +.+-.. . ..|.++   .--|..+++|++-+.|++++
T Consensus       247 slw~wdas~~~l~i~~~~s~~s~W-LsgD-~v~s~i~i~~ll~~~~~Sinsf---DV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  247 SLWHWDASTTFLSISNQASVISSW-LSGD-PVKSRIEITSLLPSRSLSINSF---DVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cEEEEcCCCceEEecCcccccccc-ccCC-cccceEeeeccccccceeeeee---eccCceEEeccccceEEEec
Confidence            999999875321   111111111 1110 1111   111100 0 113443   34588999999999888875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.80  E-value=2.1e-06  Score=80.49  Aligned_cols=206  Identities=11%  Similarity=0.087  Sum_probs=121.0

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC-------CCCCce-------ec-------------cccc
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-------SDTPVD-------TF-------------CPRH   86 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~-------~~~~~~-------~~-------------~~~~   86 (316)
                      ..+|.+++|+|++ .+++..+.++++.+.+.. .+.+.+..       ...++.       +.             ...+
T Consensus       120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  120 DSGILAASWSPDE-ELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             cCcEEEEEECCCc-CEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            4589999999999 899988888988876532 22111110       000110       00             0000


Q ss_pred             -------ccCCCcccEEEEEEccCCCeEEEe-c---C---CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc
Q 021160           87 -------LIGKNNIHITGLAYSNTSELLISY-N---D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ  152 (316)
Q Consensus        87 -------~~~~~~~~i~~~~~~~~~~~l~s~-~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (316)
                             ... +...-..++|-.||+++|.+ -   .   ..+++|+-+..                  ++....... .
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~------------------L~stSE~v~-g  257 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE------------------LQSTSEPVD-G  257 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce------------------EEeccccCC-C
Confidence                   111 34466789999999988773 2   3   46889986531                  222221111 1


Q ss_pred             eeeeEEEecCCCcEEEEecc---CCeEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          153 TVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      --.+++| .|.|++||+.-.   ...|.+|.-+ |-.-..|.    .....|..++|++++..||..-.|. |.+|-..+
T Consensus       258 Le~~l~W-rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  258 LEGALSW-RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             ccCCccC-CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            1346788 999999988754   4457777643 33333332    3456899999999999999877554 99998876


Q ss_pred             CC---CCCCCCC-cccceeeeecCC-CCceeEEecCCCeEEEEEe
Q 021160          226 TD---FPPLPDN-AEKIMKANKQGR-EDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       226 ~~---~~~~~~~-~~~~~~~~~~~~-~~~~~~s~~~d~~~~~w~~  265 (316)
                      ..   .+.+.-. ...+.. ..|++ +...+...+.++.+...++
T Consensus       335 YHWYLKqei~~~~~~~~~~-~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  335 YHWYLKQEIRFSSSESVNF-VKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CEEEEEEEEEccCCCCCCc-eEECCCCCCEEEEEecCCcEEEEEE
Confidence            54   1122211 112222 34666 4555666666566655544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=7.9e-07  Score=84.72  Aligned_cols=186  Identities=10%  Similarity=0.023  Sum_probs=111.2

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcE
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELV  115 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i  115 (316)
                      ..++|+|++..++++...++.|++||..++....... ................-.....++++|++. ++++ ..++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G-~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG-DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec-CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5789999553777887888999999998765321000 000000000000001123456799999997 5555 468999


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCc------CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      ++||+.++.......   .+.........+....      .......+++ +++|..+++-+.++.|++||..++.....
T Consensus       765 rv~D~~tg~~~~~~g---g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        765 RALDLKTGGSRLLAG---GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             EEEECCCCcEEEEEe---cccccCcccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            999987652000000   0000000000000000      0011457888 89999888889999999999987765432


Q ss_pred             ee-------------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 021160          190 MV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  228 (316)
Q Consensus       190 ~~-------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~  228 (316)
                      ..             +.-.....++++++|+.+++.+.++.|++||+.++..
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            21             1112567899999999888888999999999987653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.76  E-value=4.8e-07  Score=71.04  Aligned_cols=230  Identities=16%  Similarity=0.216  Sum_probs=135.2

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccc----c--CCCcccEEEEEEccCCC--
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL----I--GKNNIHITGLAYSNTSE--  105 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~i~~~~~~~~~~--  105 (316)
                      ...|+++.|...| .|+++|...|.|.+|.-.... ..+...   ...|....+    .  -.-...|..+.|..++.  
T Consensus        26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceykf---~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYKF---FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchhh---hhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            4579999999999 899999999999999876433 000000   000000000    0  01134688888877653  


Q ss_pred             -eEEEecCCcEEEEEcCCCC------------------CCCCc--cCCc-----cc-cccCCCccee-eCCcCCceeeeE
Q 021160          106 -LLISYNDELVYLFEKNMGL------------------GPSPL--SLSP-----ED-LQKREEPQVY-SGHRNSQTVKGV  157 (316)
Q Consensus       106 -~l~s~~d~~i~iwd~~~~~------------------~~~~~--~~~~-----~~-~~~~~~~~~~-~~~~~~~~i~~~  157 (316)
                       +|+++.|++|++|.+....                  ++...  .+..     .+ +-..++.+.+ ..|+--  +.++
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh--iNSi  178 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH--INSI  178 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE--eeee
Confidence             8888999999999997652                  10000  0000     00 0001122222 334433  8889


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCe---eEEEeecCc-----cceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC-
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-  227 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~-----~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~-  227 (316)
                      .| ..+.+.++++ +|=.|-+|++.-..   .+--++.|.     ..|++..|||... .+.-.+..|.|++-|++... 
T Consensus       179 S~-NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         179 SF-NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             ee-cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence            98 6777777665 57789999976432   233334443     4689999999754 46667779999999998432 


Q ss_pred             ------CCCCC--C-----Ccccc--eeeeecCCCCceeEEecCCCeEEEEEecccCccee
Q 021160          228 ------FPPLP--D-----NAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY  273 (316)
Q Consensus       228 ------~~~~~--~-----~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~  273 (316)
                            +..+.  +     ....+  ++...+++.++++++-+ =-++++||+...+.++.
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pik  316 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIK  316 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCce
Confidence                  11111  1     01111  23334666777777644 36789999987655543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.74  E-value=1.9e-05  Score=63.25  Aligned_cols=217  Identities=11%  Similarity=0.054  Sum_probs=129.7

Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc-cCCCeEEEecCCcEEE
Q 021160           39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL  117 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~d~~i~i  117 (316)
                      +..|.+....++++-...+.|..|+..+++..              . . .  ......+++. +++.++++.. +.+.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~-~-~--~~~~~G~~~~~~~g~l~v~~~-~~~~~   64 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------V-I-D--LPGPNGMAFDRPDGRLYVADS-GGIAV   64 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------E-E-E--SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------E-E-e--cCCCceEEEEccCCEEEEEEc-CceEE
Confidence            67889844378888778899999999877521              1 1 1  1115667777 6666666654 44555


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeC--Cc-CCceeeeEEEecCCCcEEEEeccC--------CeEEEEeccCCee
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL  186 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~~wd~~~~~~  186 (316)
                      +|..++                +.......  .. .....+.+++ .++|.+.++....        |.+..++.. ++.
T Consensus        65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~  126 (246)
T PF08450_consen   65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV  126 (246)
T ss_dssp             EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred             EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence            588776                22222221  11 2234889998 9999977776543        568888877 664


Q ss_pred             EEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCC--------CCCCCCcccceeeeecCCCCceeEEecCC
Q 021160          187 VRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       187 ~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      ..... .-...+.++|+|+++.| ++-+..+.|..+++.....        ..+..... ...-.....++++.++....
T Consensus       127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EEEEEETT
T ss_pred             EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEEEEEcCC
Confidence            44333 34567899999999875 4667778888888853321        11111111 12223356678888888888


Q ss_pred             CeEEEEEecccCcceeEEee-cccccccc-cCCCCeEEEE
Q 021160          258 VIMHVLRLQRRQTLAYRERR-YNAADFES-DEEEGETYLL  295 (316)
Q Consensus       258 ~~~~~w~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~v~~~  295 (316)
                      +.|.+++.. ++........ +....++. +.+..++|+.
T Consensus       205 ~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  205 GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            989989866 5444333222 33344444 3444566654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.4e-07  Score=79.47  Aligned_cols=220  Identities=12%  Similarity=0.087  Sum_probs=137.0

Q ss_pred             ceeeEEEEeeCCCc-ce---EEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDSA-TR---LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~-~~---~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      +.+|++|.++...- .+   +....        ..|+.+|.++.|-.+. +++++  .||.|++||.-.++....+    
T Consensus       756 DKTVKLWSik~EgD~~~tsaCQfTY--------~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~----  820 (1034)
T KOG4190|consen  756 DKTVKLWSIKPEGDEIGTSACQFTY--------QAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQM----  820 (1034)
T ss_pred             CceEEEEEeccccCccccceeeeEh--------hhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhh----
Confidence            57899999975321 11   11111        1389999999999877 67765  4899999998766532110    


Q ss_pred             CceecccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--cCC-c
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-Q  152 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  152 (316)
                            ......+....|.|+. +-+..+++ .+ ...+|+++|.+..                .....++..  ..+ .
T Consensus       821 ------~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc----------------e~~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  821 ------EDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC----------------EWTCELKVCNAPGPNA  877 (1034)
T ss_pred             ------hcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc----------------cceeeEEeccCCCCch
Confidence                  0000012223344442 21333444 33 5899999999876                233223211  111 2


Q ss_pred             eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE-ecCCCCC-CCC
Q 021160          153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL-WAPMPTD-FPP  230 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i-wd~~~~~-~~~  230 (316)
                      .+.+++. .+.|+.++.+-.+|.+.+.|.++|+.+.....-......++ .|..+.++....|.++.+ |..-.+. ..+
T Consensus       878 ~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  878 LTRAIAV-ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             heeEEEe-ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence            3788888 89999999999999999999999999887765555555554 356667888888999998 8766554 222


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      ......+..-+   ..-+..+++......+.++.
T Consensus       956 ~kpppepahfl---qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  956 DKPPPEPAHFL---QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             cCCCCcchhhh---hccCceeEEeccCcEEEEEe
Confidence            22222222111   11244677777777788775

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=4.1e-06  Score=70.87  Aligned_cols=110  Identities=11%  Similarity=0.092  Sum_probs=73.5

Q ss_pred             eeeEEEecCCCcEEEEecc---CCeEEEEeccC-C---eeEEEeecCccceEEEEEcCCCCeEEEE---eCCCcEEEecC
Q 021160          154 VKGVNFFGPNDEYVMSGSD---CGHLFIWKKKG-G---KLVRLMVGDRHVVNQLEPHPHIPMFATC---GIEKTVKLWAP  223 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~---dg~v~~wd~~~-~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~---~~d~~i~iwd~  223 (316)
                      |...+| .|.|+.+++-+.   ..++.+|-+++ .   +++..+.  ....+.+.|+|.|++++.+   |..|.+..+|.
T Consensus       448 vi~FaW-EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  448 VIAFAW-EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             eeeeee-ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence            566677 788887766543   45688888773 2   2333333  2456889999999997765   45688999998


Q ss_pred             CCCC--CCCCCCCcccceeeeecCCCCceeEEecCC------CeEEEEEeccc
Q 021160          224 MPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRR  268 (316)
Q Consensus       224 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d------~~~~~w~~~~~  268 (316)
                      .-..  ....+.|.  ..+-..|.|.|+++++++.-      .-.++|+++..
T Consensus       525 ~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  525 DYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             chhhhhhccCcccc--ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            7533  22233333  33455589999999998764      55678887643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.71  E-value=3e-06  Score=70.42  Aligned_cols=144  Identities=12%  Similarity=0.115  Sum_probs=107.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCC-cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      .+|.+.|.-..+..++ +-++.|..|| .+-++|.++++..               .+ ...-+.|.++..+++|++++.
T Consensus       356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---------------r~-e~~lg~I~av~vs~dGK~~vv  418 (668)
T COG4946         356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---------------RI-EKDLGNIEAVKVSPDGKKVVV  418 (668)
T ss_pred             cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE---------------Ee-eCCccceEEEEEcCCCcEEEE
Confidence            4688899999998877 6899999999 8999999988621               11 334578999999999998777


Q ss_pred             ec-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC----eEEEEeccCC
Q 021160          110 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGG  184 (316)
Q Consensus       110 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~v~~wd~~~~  184 (316)
                      ++ ...+.+.|++++                . ++.+.. ....-|+.+.| +|+++++|-+--+|    .|+++|+..+
T Consensus       419 aNdr~el~vididng----------------n-v~~idk-S~~~lItdf~~-~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         419 ANDRFELWVIDIDNG----------------N-VRLIDK-SEYGLITDFDW-HPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EcCceEEEEEEecCC----------------C-eeEecc-cccceeEEEEE-cCCceeEEEecCcceeeeeEEEEecCCC
Confidence            64 677999999988                2 333322 22234999999 99999999887655    5899999988


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEE
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s  211 (316)
                      +....- ...+-=.+-+|.|++++|.-
T Consensus       480 Kiy~vT-T~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         480 KIYDVT-TPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             eEEEec-CCcccccCcccCCCCcEEEE
Confidence            865433 22333356788999987543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.68  E-value=5.5e-06  Score=65.95  Aligned_cols=217  Identities=11%  Similarity=0.035  Sum_probs=125.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|+|..||+++.+..........        .. ...+..+ +.+ ..+++++.++.|..||..+++.......+     
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~--------~~-~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-----   65 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG--------IG-GPVATAV-PDG-GRVYVASGDGNLYALDAKTGKVLWRFDLP-----   65 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS--------CS-SEEETEE-EET-TEEEEEETTSEEEEEETTTSEEEEEEECS-----
T ss_pred             CCEEEEEECCCCCEEEEEECCCC--------CC-CccceEE-EeC-CEEEEEcCCCEEEEEECCCCCEEEEeecc-----
Confidence            58899999988776555544210        01 1221122 234 46777789999999999999843221110     


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCccee-eCCcCC-c--eeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNS-Q--TVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~i~~~  157 (316)
                             ......    ....++.+++...++.++.+|..++                +..... ...... .  .....
T Consensus        66 -------~~~~~~----~~~~~~~v~v~~~~~~l~~~d~~tG----------------~~~W~~~~~~~~~~~~~~~~~~  118 (238)
T PF13360_consen   66 -------GPISGA----PVVDGGRVYVGTSDGSLYALDAKTG----------------KVLWSIYLTSSPPAGVRSSSSP  118 (238)
T ss_dssp             -------SCGGSG----EEEETTEEEEEETTSEEEEEETTTS----------------CEEEEEEE-SSCTCSTB--SEE
T ss_pred             -------ccccce----eeecccccccccceeeeEecccCCc----------------ceeeeeccccccccccccccCc
Confidence                   110111    1233445555667889999998888                455442 222110 0  12223


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc----------e-EEEEEcCCCCeEEEEeCCCc-EEEecCCC
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV----------V-NQLEPHPHIPMFATCGIEKT-VKLWAPMP  225 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~----------v-~~~~~~p~~~~l~s~~~d~~-i~iwd~~~  225 (316)
                      .+   .+..++.+..++.+..+|+++|+.+.........          + ..+.+. ++ .+..++.++. +.+ |+.+
T Consensus       119 ~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~t  192 (238)
T PF13360_consen  119 AV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLAT  192 (238)
T ss_dssp             EE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTT
T ss_pred             eE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCC
Confidence            22   3778888888999999999999998877654322          1 223333 34 6556666775 555 9988


Q ss_pred             CCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          226 TDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ++.. ...........  ...++..++..+.++.+..||+.+++.
T Consensus       193 g~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  193 GEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             TEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             CCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            8722 11111111111  223455666666899999999988744

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.61  E-value=9.4e-06  Score=76.25  Aligned_cols=210  Identities=11%  Similarity=0.123  Sum_probs=131.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEE----eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      ...|.++.+-++. ..++.+..+|.|.+.    +.....+                .....-...|.+++||||+++|+.
T Consensus        75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~----------------E~VG~vd~GI~a~~WSPD~Ella~  137 (928)
T PF04762_consen   75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEI----------------EIVGSVDSGILAASWSPDEELLAL  137 (928)
T ss_pred             CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCcee----------------EEEEEEcCcEEEEEECCCcCEEEE
Confidence            4578899999988 788888999999999    5544331                111233678999999999997766


Q ss_pred             -ecCCcEEEEEcCCCC---------------------CCCCccCCcccccc-----CCC------cceeeCCcCCceeee
Q 021160          110 -YNDELVYLFEKNMGL---------------------GPSPLSLSPEDLQK-----REE------PQVYSGHRNSQTVKG  156 (316)
Q Consensus       110 -~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~i~~  156 (316)
                       +.++++.+.+-.-..                     +.....+....-+.     ..+      ...+. ..+.  -..
T Consensus       138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~  214 (928)
T PF04762_consen  138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR  214 (928)
T ss_pred             EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence             568887776532110                     00000000000000     000      01111 2222  567


Q ss_pred             EEEecCCCcEEEEecc---C---CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEecCCCCC
Q 021160          157 VNFFGPNDEYVMSGSD---C---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD  227 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~---d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~iwd~~~~~  227 (316)
                      ++| -.||.++|+.+-   .   ..+++|+-+ |++......-.+--.+++|-|.|++||+.-.   ...|.+|.-++.+
T Consensus       215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr  292 (928)
T PF04762_consen  215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR  292 (928)
T ss_pred             EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence            888 899999998774   2   579999977 7766555433344457899999999998763   3467788766544


Q ss_pred             CC--CCC--CCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          228 FP--PLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       228 ~~--~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ..  .++  .....+..+. |+.++..|+....|. |++|-..+
T Consensus       293 hgeF~l~~~~~~~~v~~l~-Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELA-WNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             eeeEecCCCCCCceeeEEE-ECCCCCEEEEEecCC-ceEEEeeC
Confidence            22  222  2334454444 888888888766555 99997665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.61  E-value=2.9e-05  Score=66.44  Aligned_cols=214  Identities=13%  Similarity=0.053  Sum_probs=120.5

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      ..++.++.++.+..+|..+++.......                ...+.+.....++.+++...++.++.||.+++    
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG----  165 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKL----------------SSEVLSPPLVANGLVVVRTNDGRLTALDAATG----  165 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeecc----------------CceeecCCEEECCEEEEECCCCeEEEEEcCCC----
Confidence            5677888899999999988874321110                11111111112345556567999999999887    


Q ss_pred             CccCCccccccCCCcceeeCCcCCce---eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc--c-----ce
Q 021160          128 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR--H-----VV  197 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~--~-----~v  197 (316)
                                  +.+..+........   ..+... .  +..++.+..++.+..+|.++|+.+.......  +     ..
T Consensus       166 ------------~~~W~~~~~~~~~~~~~~~sp~~-~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~  230 (377)
T TIGR03300       166 ------------ERLWTYSRVTPALTLRGSASPVI-A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL  230 (377)
T ss_pred             ------------ceeeEEccCCCceeecCCCCCEE-E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence                        34433332211100   011112 1  3467788889999999999998765432110  0     00


Q ss_pred             EEEEEcC--CCCeEEEEeCCCcEEEecCCCCCCC-CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160          198 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       198 ~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~  274 (316)
                      ..+.-+|  .+..+..++.++.++.||.++++.. ... ...    .......+..+..++.++.+..+|..+++.+ +.
T Consensus       231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~----~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~-W~  304 (377)
T TIGR03300       231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS----YQGPAVDDNRLYVTDADGVVVALDRRSGSEL-WK  304 (377)
T ss_pred             hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC----ccCceEeCCEEEEECCCCeEEEEECCCCcEE-Ec
Confidence            0011111  2456777778999999999887621 111 110    0001123556777788999999998776432 21


Q ss_pred             --Ee--------ecccccccccCCCCeEEEEeccCCCC
Q 021160          275 --ER--------RYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       275 --~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                        ..        ......+...+.+|.+++++..+++.
T Consensus       305 ~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       305 NDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             cccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence              10        11233445556788899988776654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.9e-06  Score=69.97  Aligned_cols=79  Identities=8%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEE
Q 021160           30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI  108 (316)
Q Consensus        30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  108 (316)
                      ..+|...|..++|+|.+.-++..++.+.+|+|.|+++..+.              ... ..+ ..+++.+|.-+.. ++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------ssy-~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------SSY-IAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------ehe-ecc-CCceeeeeccCCcceeE
Confidence            34678899999999988448899999999999999987522              111 333 6789999998875 666


Q ss_pred             Ee-cCCcEEEEEcCCCC
Q 021160          109 SY-NDELVYLFEKNMGL  124 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~  124 (316)
                      +| ..|.|++||++...
T Consensus       253 aGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EeccCceEEEEEccCCC
Confidence            66 69999999998775

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=1.8e-07  Score=51.22  Aligned_cols=38  Identities=24%  Similarity=0.688  Sum_probs=34.8

Q ss_pred             CCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160          140 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  180 (316)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd  180 (316)
                      ++++.+.+|...  |.+++| +|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence            456789999977  999999 89999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=0.00023  Score=57.51  Aligned_cols=206  Identities=10%  Similarity=0.141  Sum_probs=121.7

Q ss_pred             EEEEECCCCCcEEEEEe-cCCcEEEEeCcC-CcccCCCCCCCCceecccccccCCC----cccEEEEEEccCCCeEEEe-
Q 021160           38 NAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKN----NIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +.+++++++ ++++++. .-|.|.++-++. +.+...      +... ...-...|    ...+....+.|++++|++. 
T Consensus        92 ~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~------v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          92 CYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPV------VQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             eEEEECCCC-CEEEEEEccCceEEEEEcccCCccccc------eeee-ecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence            789999999 7777776 458899999865 332111      1100 00000011    1227788999999988875 


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccCC-eeE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG-KLV  187 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~-~~~  187 (316)
                       .-..|.+|++..+..           ..... ..+ ...  .....+.| +|++++..+.++ +++|-+|..... ..+
T Consensus       164 LG~Dri~~y~~~dg~L-----------~~~~~-~~v-~~G--~GPRHi~F-Hpn~k~aY~v~EL~stV~v~~y~~~~g~~  227 (346)
T COG2706         164 LGTDRIFLYDLDDGKL-----------TPADP-AEV-KPG--AGPRHIVF-HPNGKYAYLVNELNSTVDVLEYNPAVGKF  227 (346)
T ss_pred             cCCceEEEEEcccCcc-----------ccccc-ccc-CCC--CCcceEEE-cCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence             466799999986620           00011 111 122  22788999 999999988776 899999998763 222


Q ss_pred             EEeec---------CccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCC--CCCC---CCCCcccceeeeecCCCCceeE
Q 021160          188 RLMVG---------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT--DFPP---LPDNAEKIMKANKQGREDHSRI  252 (316)
Q Consensus       188 ~~~~~---------~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~  252 (316)
                      ..++.         .......+..+|+|++|..+. ....|-+|.+...  ++..   ...+.......+ ..+.+++|+
T Consensus       228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~-i~~~g~~Li  306 (346)
T COG2706         228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN-INPSGRFLI  306 (346)
T ss_pred             EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce-eCCCCCEEE
Confidence            22221         123567788999999987764 2336777766533  2111   111222122333 445566666


Q ss_pred             EecC-CCeEEEEEeccc
Q 021160          253 TLTP-DVIMHVLRLQRR  268 (316)
Q Consensus       253 s~~~-d~~~~~w~~~~~  268 (316)
                      .... +..+.++.....
T Consensus       307 aa~q~sd~i~vf~~d~~  323 (346)
T COG2706         307 AANQKSDNITVFERDKE  323 (346)
T ss_pred             EEccCCCcEEEEEEcCC
Confidence            6554 356777766543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.53  E-value=4.6e-05  Score=65.23  Aligned_cols=190  Identities=10%  Similarity=0.011  Sum_probs=105.0

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      ..++.++.++.+..||.++++.........+....      ....    +.... ++.+++...++.+..+|..++    
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~------~~~~----sp~~~-~~~v~~~~~~g~v~ald~~tG----  210 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL------RGSA----SPVIA-DGGVLVGFAGGKLVALDLQTG----  210 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEEccCCCceee------cCCC----CCEEE-CCEEEEECCCCEEEEEEccCC----
Confidence            46677778999999999988743221111110000      0001    11111 233444456789999998877    


Q ss_pred             CccCCccccccCCCcceeeCC-c-CCc---eeeeEEEecC--CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE
Q 021160          128 PLSLSPEDLQKREEPQVYSGH-R-NSQ---TVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL  200 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~-~-~~~---~i~~~~~~~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  200 (316)
                                  +........ . ...   .+..+.- +|  .+..+++++.+|.++.+|..+|+.+......  .....
T Consensus       211 ------------~~~W~~~~~~~~g~~~~~~~~~~~~-~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p  275 (377)
T TIGR03300       211 ------------QPLWEQRVALPKGRTELERLVDVDG-DPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGP  275 (377)
T ss_pred             ------------CEeeeeccccCCCCCchhhhhccCC-ccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCc
Confidence                        222211100 0 000   0000000 11  3567888888999999999999877665421  11222


Q ss_pred             EEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          201 EPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       201 ~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ..  .+..+..++.||.+..+|..+++ +-............  ....+..++.++.+|.+.+++..+++..
T Consensus       276 ~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss--p~i~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       276 AV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA--PAVVGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             eE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc--CEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence            22  45667777889999999998876 22221111111000  0113557888899999999998877554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.51  E-value=8.4e-06  Score=70.06  Aligned_cols=142  Identities=13%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  115 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  115 (316)
                      ....+.++|++ +.+++ ..||.-.++.....+                    ....+......|.+.+++.+--...+|
T Consensus        34 ~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I   91 (443)
T PF04053_consen   34 YPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTI   91 (443)
T ss_dssp             --SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred             CCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeE
Confidence            46899999999 77777 556888888743222                    112345567889986665555568889


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  195 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~  195 (316)
                      .++.--..                .....+.... .  +..+ | .  |.+|...+. +.|.+||+.+++.++.+...  
T Consensus        92 ~I~kn~~~----------------~~~k~i~~~~-~--~~~I-f-~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--  145 (443)
T PF04053_consen   92 KIYKNFKN----------------EVVKSIKLPF-S--VEKI-F-G--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--  145 (443)
T ss_dssp             EEEETTEE-----------------TT-----SS----EEEE-E----SSSEEEEET-TEEEEE-TTT--EEEEESS---
T ss_pred             EEEEcCcc----------------ccceEEcCCc-c--cceE-E-c--CcEEEEECC-CCEEEEEhhHcceeeEEecC--
Confidence            99632222                2223333221 1  4444 2 3  777766654 48999999999999998743  


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      +|..+.|++++.+++..+. ..+.|++....
T Consensus       146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~~~  175 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTK-DSIYILKYNLE  175 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             CCcEEEEECCCCEEEEEeC-CeEEEEEecch
Confidence            4899999999999888874 47777765443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.49  E-value=5.2e-08  Score=83.37  Aligned_cols=202  Identities=13%  Similarity=0.190  Sum_probs=130.0

Q ss_pred             cceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEec-
Q 021160           35 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-  111 (316)
Q Consensus        35 ~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~-  111 (316)
                      ..+.|+++.-+.. .++++|..+|.|.+-.++...-             .......+|..++++++|++-. +.||+|- 
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagld  123 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLD  123 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhh
Confidence            3566777655432 5788899999999998875431             1233446788999999999854 5777653 


Q ss_pred             ----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC-CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-e
Q 021160          112 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-K  185 (316)
Q Consensus       112 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~  185 (316)
                          |..+.|||+.++..          .+  +....|.+ ....  ..+++| -.+.+++.+|.....++++|++.. .
T Consensus       124 khrnds~~~Iwdi~s~lt----------vP--ke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs~~  188 (783)
T KOG1008|consen  124 KHRNDSSLKIWDINSLLT----------VP--KESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQSLD  188 (783)
T ss_pred             hhcccCCccceecccccC----------CC--ccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhhhh
Confidence                67799999987621          00  11111222 2222  668888 688999999999999999999832 2


Q ss_pred             eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecC-CCCC--CCCCCCC----cccceeeeecCCCCceeEEecC-
Q 021160          186 LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAP-MPTD--FPPLPDN----AEKIMKANKQGREDHSRITLTP-  256 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~-~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~-  256 (316)
                      ....+  .+..+..+...| ...++++-. |+.|.+||. +.-+  +..+...    .+.+..+++.+.....+++... 
T Consensus       189 ~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd  265 (783)
T KOG1008|consen  189 SVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD  265 (783)
T ss_pred             hhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence            12222  234566677888 667777766 999999993 3322  2222211    2236677755554445555554 


Q ss_pred             CCeEEEEEecc
Q 021160          257 DVIMHVLRLQR  267 (316)
Q Consensus       257 d~~~~~w~~~~  267 (316)
                      .++|+.+++..
T Consensus       266 S~tIrlydi~~  276 (783)
T KOG1008|consen  266 SITIRLYDICV  276 (783)
T ss_pred             cceEEEecccc
Confidence            48889998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.49  E-value=0.0002  Score=56.17  Aligned_cols=204  Identities=12%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEE
Q 021160           40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF  118 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iw  118 (316)
                      ++.+.+| ++||+ -.|..|.+-..+..-        ..+.  ....+...-.-.-..++|+||+.+||.+ +.|+|++|
T Consensus         3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf--------~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf   70 (282)
T PF15492_consen    3 LALSSDG-KLLAI-LQDQCIEIRSAKDDF--------SSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF   70 (282)
T ss_pred             eeecCCC-cEEEE-EeccEEEEEeccCCc--------hhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence            4556677 55554 456666665544321        0110  1112223333456789999999998886 79999999


Q ss_pred             EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-----CcEEEEeccCCeEEEEeccCC-----eeEE
Q 021160          119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR  188 (316)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~~wd~~~~-----~~~~  188 (316)
                      |+.....        ..+   .+...+.+.. ...|..+.|..+.     ...|++-...|.++-|-+..+     +...
T Consensus        71 dl~g~~l--------f~I---~p~~~~~~d~-~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h  138 (282)
T PF15492_consen   71 DLMGSEL--------FVI---PPAMSFPGDL-SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH  138 (282)
T ss_pred             eccccee--------EEc---CcccccCCcc-ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence            9975310        000   0111111111 1236667663222     234666677888877765322     2233


Q ss_pred             Eee---cCccceEEEEEcCCCCeEEEEe-CCC----------cEEEecCCCCC------------C---------CCCC-
Q 021160          189 LMV---GDRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTD------------F---------PPLP-  232 (316)
Q Consensus       189 ~~~---~~~~~v~~~~~~p~~~~l~s~~-~d~----------~i~iwd~~~~~------------~---------~~~~-  232 (316)
                      .+.   .+...|.++.++|..+.|+.|| ...          -+.-|.+-.+.            +         ..+. 
T Consensus       139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence            332   2467899999999988866554 222          24455432211            0         0000 


Q ss_pred             --------CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          233 --------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       233 --------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                              ...+.++.+. .+|++..+++...+|.+.+|++..-
T Consensus       219 ~~~fs~~~~~~d~i~kmS-lSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  219 FKFFSRQGQEQDGIFKMS-LSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             eeeeeccccCCCceEEEE-ECCCCCEEEEEEcCCeEEEEecCcc
Confidence                    1123333443 6778888888888888888887654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.49  E-value=9.3e-05  Score=59.53  Aligned_cols=204  Identities=15%  Similarity=0.142  Sum_probs=126.6

Q ss_pred             ceEEEEECCCCCcEEEEEecCCc-EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec---
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---  111 (316)
                      ....++.+|..+..++.+-.-|. ..+||..+++....+..+      .-+++ .+      --.|+++|++|.++.   
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yG------Hg~fs~dG~~LytTEnd~   72 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YG------HGVFSPDGRLLYTTENDY   72 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ec------CEEEcCCCCEEEEecccc
Confidence            45678899976677777776655 677999988743221110      00111 22      356999999877752   


Q ss_pred             ---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----------------
Q 021160          112 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------------  172 (316)
Q Consensus       112 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------------  172 (316)
                         .|.|-|||.....               ..+..+..+.-.  ...+.+ .|+++.|+++..                
T Consensus        73 ~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecChh
Confidence               5679999998431               456667666644  667777 899987776632                


Q ss_pred             --CCeEEEEeccCCeeEEE--e--ecCccceEEEEEcCCCCeEEEEeCCC-------cEEEecCCCCC-CCCCC-----C
Q 021160          173 --CGHLFIWKKKGGKLVRL--M--VGDRHVVNQLEPHPHIPMFATCGIEK-------TVKLWAPMPTD-FPPLP-----D  233 (316)
Q Consensus       173 --dg~v~~wd~~~~~~~~~--~--~~~~~~v~~~~~~p~~~~l~s~~~d~-------~i~iwd~~~~~-~~~~~-----~  233 (316)
                        +..+.+.|..+|+++..  +  ..|.-.|..+++.++|..++..-..+       .|-+++....- ....+     .
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR  214 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence              22466777888988876  4  23777899999999987655544333       23334332211 11111     0


Q ss_pred             CcccceeeeecCCCCc-eeEEecCCCeEEEEEecccCcc
Q 021160          234 NAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ....+-+++ ...++. ..+|+...+.+.+||..++...
T Consensus       215 l~~Y~gSIa-~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  215 LNGYIGSIA-ADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             hCCceEEEE-EeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            112222333 455554 4566777899999998887554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=1.8e-07  Score=83.11  Aligned_cols=154  Identities=11%  Similarity=0.157  Sum_probs=111.0

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  109 (316)
                      ..|....+|++|+-.. +.|+.|+..|.|++|++.+|.              ..... +.|..+|+-+.-+.+|..+.+ 
T Consensus      1098 rd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--------------~e~s~-ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--------------MEESV-NCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             hccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--------------ccccc-cccccccccccccCCcceeeee
Confidence            3477889999999987 899999999999999999986              23333 889999999999999974444 


Q ss_pred             e-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          110 Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       110 ~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      + . .-...+|++....               .+.+.|.+      -.++.| +..-++-+.|+......+||++++..+
T Consensus      1162 ss~S~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             ccccCchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHH
Confidence            3 2 3357799986531               34444443      346777 666666677777788999999999877


Q ss_pred             EEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          188 RLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       188 ~~~~~----~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .++-.    ..-.-+.+.|+|+..+++   .||.  +||++...
T Consensus      1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~ 1258 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPE 1258 (1516)
T ss_pred             HHhcCcchhhhhhccccccCCCcceEe---eCce--eeeeccHH
Confidence            66321    112236688999887764   3553  78887654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=5.4e-05  Score=64.36  Aligned_cols=197  Identities=8%  Similarity=0.063  Sum_probs=120.1

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec-----
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----  111 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----  111 (316)
                      =+-+.|+|.| .||++-...| |.+|--.+-...         +.       -.| ..|.-+.|||..++|++-+     
T Consensus       213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~---------~R-------F~H-p~Vq~idfSP~EkYLVT~s~~p~~  273 (698)
T KOG2314|consen  213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRI---------QR-------FYH-PGVQFIDFSPNEKYLVTYSPEPII  273 (698)
T ss_pred             eeeEEecCCc-eEEEEEeccc-eeeecCccHHHH---------Hh-------ccC-CCceeeecCCccceEEEecCCccc
Confidence            4678999999 8999887654 789976644311         11       122 3478899999999999832     


Q ss_pred             -C------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee-EEEecCCCcEEEEeccCCeEEEEeccC
Q 021160          112 -D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       112 -d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~v~~wd~~~  183 (316)
                       +      ..++|||+.+|                ...+.|.....+..++. +.| |.|++++|.-.. ..|.||+..+
T Consensus       274 ~~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frW-S~DdKy~Arm~~-~sisIyEtps  335 (698)
T KOG2314|consen  274 VEEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRW-SHDDKYFARMTG-NSISIYETPS  335 (698)
T ss_pred             cCcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEe-ccCCceeEEecc-ceEEEEecCc
Confidence             1      56999999998                56666665433222333 455 999999987765 5688998776


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeC-----CCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEE----
Q 021160          184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-----EKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRIT----  253 (316)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s----  253 (316)
                      -.++..-.-.-..|....|+|.++.||-=..     -..+.+-.+.+++ +++-.-+.-.-..+- |...+.+|..    
T Consensus       336 f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh-WQk~gdyLcvkvdR  414 (698)
T KOG2314|consen  336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH-WQKSGDYLCVKVDR  414 (698)
T ss_pred             eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE-eccCCcEEEEEEEe
Confidence            4433222223467889999999888774331     1245555555544 332222222222333 4444444432    


Q ss_pred             ------ecCCCeEEEEEecccCcc
Q 021160          254 ------LTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       254 ------~~~d~~~~~w~~~~~~~~  271 (316)
                            .+.-..+.++++++++.+
T Consensus       415 ~tK~~~~g~f~n~eIfrireKdIp  438 (698)
T KOG2314|consen  415 HTKSKVKGQFSNLEIFRIREKDIP  438 (698)
T ss_pred             eccccccceEeeEEEEEeeccCCC
Confidence                  112235667777776554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.45  E-value=0.00025  Score=56.78  Aligned_cols=172  Identities=14%  Similarity=0.130  Sum_probs=102.5

Q ss_pred             eEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC--
Q 021160           37 LNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND--  112 (316)
Q Consensus        37 v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d--  112 (316)
                      ...+++. +++  .++.+.. +.+.++|+.+++..          .+.............+.+++.|+|++.++. ..  
T Consensus        42 ~~G~~~~~~~g--~l~v~~~-~~~~~~d~~~g~~~----------~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~  108 (246)
T PF08450_consen   42 PNGMAFDRPDG--RLYVADS-GGIAVVDPDTGKVT----------VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG  108 (246)
T ss_dssp             EEEEEEECTTS--EEEEEET-TCEEEEETTTTEEE----------EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC
T ss_pred             CceEEEEccCC--EEEEEEc-CceEEEecCCCcEE----------EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc
Confidence            6677887 555  4444444 44566698887632          111111101135678899999999977774 21  


Q ss_pred             ------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCC-
Q 021160          113 ------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGG-  184 (316)
Q Consensus       113 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~-  184 (316)
                            +.|+.++.. +                +...... ....  ...++| +|+++.|+ +-+..+.|..+++... 
T Consensus       109 ~~~~~~g~v~~~~~~-~----------------~~~~~~~-~~~~--pNGi~~-s~dg~~lyv~ds~~~~i~~~~~~~~~  167 (246)
T PF08450_consen  109 ASGIDPGSVYRIDPD-G----------------KVTVVAD-GLGF--PNGIAF-SPDGKTLYVADSFNGRIWRFDLDADG  167 (246)
T ss_dssp             TTCGGSEEEEEEETT-S----------------EEEEEEE-EESS--EEEEEE-ETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             cccccccceEEECCC-C----------------eEEEEec-Cccc--ccceEE-CCcchheeecccccceeEEEeccccc
Confidence                  557777776 3                2222222 2322  788999 99998765 6677889999998632 


Q ss_pred             e-e--EEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeee
Q 021160          185 K-L--VRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN  242 (316)
Q Consensus       185 ~-~--~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  242 (316)
                      . .  ...+   ....+..-.+++..+|++.++....+.|.+++.....+..+.-....+..++
T Consensus       168 ~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  168 GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEE
T ss_pred             cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEE
Confidence            2 1  1222   2222347789999999988887778999999998443333322222344444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.45  E-value=6e-06  Score=73.92  Aligned_cols=171  Identities=15%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .+..+|+++.+..+.....           .+.|.=|+.+  + +++.+|...|+|.+-|.++.+              .
T Consensus       158 ~li~~Dl~~~~e~r~~~v~-----------a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--------------~  209 (1118)
T KOG1275|consen  158 KLIHIDLNTEKETRTTNVS-----------ASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--------------T  209 (1118)
T ss_pred             heeeeecccceeeeeeecc-----------CCceEEEEec--C-cEEEeecccceEEeecCCcCc--------------e
Confidence            4556677665554444332           2235445443  3 789999999999999999876              3


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEEec----------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLISYN----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                      .+.+ ..|.+.|..+..  .|+.|++++          |..|++||++..                +.+..+.-+..   
T Consensus       210 iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----------------ral~PI~~~~~---  267 (1118)
T KOG1275|consen  210 IHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM----------------RALSPIQFPYG---  267 (1118)
T ss_pred             eeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh----------------hccCCcccccC---
Confidence            3333 889998887654  577777632          566899999876                33322322222   


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccC-Cee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      ..-+.|++.-...+++++..|...+-|..+ +.+   +..+..-...+..+.+++++..+|.+..+|.|.+|.-.
T Consensus       268 P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  268 PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            233445344466788888899999998332 111   22222334568999999999999999999999999743

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.45  E-value=6.7e-05  Score=69.50  Aligned_cols=212  Identities=11%  Similarity=0.152  Sum_probs=126.9

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~  113 (316)
                      ..|.++.|..+. +.++.+..+|.|.+-|..+..+.                +...-...|.+++|+||++.++. ...+
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e----------------ivg~vd~GI~aaswS~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE----------------IVGNVDNGISAASWSPDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEccccccee----------------eeeeccCceEEEeecCCCcEEEEEeCCc
Confidence            579999999887 88888899999999988876421                11333678999999999997766 4556


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccC--------CCcceeeCCcC-------------------CceeeeEEEecCCCcE
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKR--------EEPQVYSGHRN-------------------SQTVKGVNFFGPNDEY  166 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~~  166 (316)
                      ++.+-+..-.. ..-..+...+....        +.-..|.|...                   ...-++++| -.||++
T Consensus       132 tll~mT~~f~~-i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~  209 (1265)
T KOG1920|consen  132 TLLFMTKDFEP-IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEY  209 (1265)
T ss_pred             EEEEEeccccc-hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcE
Confidence            66554431100 00000000000000        00001111000                   001245888 889999


Q ss_pred             EEE-----eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC----CCCCCCC
Q 021160          167 VMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD----FPPLPDN  234 (316)
Q Consensus       167 l~~-----~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~----~~~~~~~  234 (316)
                      +++     ....+.+++||.+ |.+-..-..-.+.-.+++|-|.|..+++-.   .|+.|.++.-++-.    ...++..
T Consensus       210 fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence            988     3334799999987 554433333334446799999999988753   45679999876654    2223333


Q ss_pred             cccceeeeecCCCCceeEE---ecCCCeEEEEEecc
Q 021160          235 AEKIMKANKQGREDHSRIT---LTPDVIMHVLRLQR  267 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s---~~~d~~~~~w~~~~  267 (316)
                      ..++-.+. |..++..++.   ......+++|-+.+
T Consensus       289 e~~ve~L~-Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  289 EKEVEELA-WNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccchheee-ecCCCCceeeeecccccceEEEEEecC
Confidence            33355555 6666666665   44445699997765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=3.2e-05  Score=68.48  Aligned_cols=141  Identities=11%  Similarity=0.045  Sum_probs=94.1

Q ss_pred             CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC-----CCeEEEe-cCCcEEEE
Q 021160           45 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-----SELLISY-NDELVYLF  118 (316)
Q Consensus        45 ~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~-~d~~i~iw  118 (316)
                      .| .++++|+.||+|.|-.+-+.+..            +.    ..-..++.+++++|+     .+.+++| .-| +.++
T Consensus        82 ~G-ey~asCS~DGkv~I~sl~~~~~~------------~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~  143 (846)
T KOG2066|consen   82 EG-EYVASCSDDGKVVIGSLFTDDEI------------TQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS  143 (846)
T ss_pred             CC-ceEEEecCCCcEEEeeccCCccc------------ee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEe
Confidence            36 89999999999999998877521            11    112568899999998     2466665 455 6666


Q ss_pred             EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc--
Q 021160          119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV--  196 (316)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~--  196 (316)
                      .-+-.                ........+...+.|.++.|   .|.+||-++++| |++||..+.+.+..++.....  
T Consensus       144 er~wl----------------gnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R  203 (846)
T KOG2066|consen  144 ERNWL----------------GNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR  203 (846)
T ss_pred             hhhhh----------------cCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC
Confidence            53321                11122234444456999999   488999998777 899999998888776533222  


Q ss_pred             ----eEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          197 ----VNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       197 ----v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                          ...+.|.++.+ |+.|- .-+|+|..++.
T Consensus       204 ~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  204 PELFPPHLHWQDEDR-LVIGW-GDSVKICSIKK  234 (846)
T ss_pred             cccCCCceEecCCCe-EEEec-CCeEEEEEEec
Confidence                34577776654 44443 44788888873

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.38  E-value=7.1e-05  Score=66.21  Aligned_cols=219  Identities=11%  Similarity=0.082  Sum_probs=137.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-----------CCcEEEEEecCCcEEEEeCcCCcccCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-----------NPNYFAVGGSDEYARVYDIRKCHWYSP   72 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-----------~~~~l~~g~~dg~v~~wd~~~~~~~~~   72 (316)
                      .|-|-|.++-+..+.+..           |+..|+.+.|.|.           ..-+||++...|.|.+||...+..   
T Consensus        36 lV~VVDs~s~q~iqsie~-----------h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---  101 (1062)
T KOG1912|consen   36 LVSVVDSRSLQLIQSIEL-----------HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---  101 (1062)
T ss_pred             eEEEEehhhhhhhhcccc-----------CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---
Confidence            355666666555444433           6889999999772           113677788889999999987752   


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccC---CC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                                 ...+ ..|..++..+.|-+.   .+ +|+. ....++.+|+..+|                .....+..
T Consensus       102 -----------~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG----------------~k~Wk~~y  153 (1062)
T KOG1912|consen  102 -----------INWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG----------------EKFWKYDY  153 (1062)
T ss_pred             -----------hhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC----------------ceeecccc
Confidence                       2222 667788888888763   33 4544 57899999999988                34443333


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-------CCeeEEEeecCcc-------------------------
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-------GGKLVRLMVGDRH-------------------------  195 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-------~~~~~~~~~~~~~-------------------------  195 (316)
                      ....  ..|+.+-+.+.+.+..-+..|.+.+-+.-       .|+..+.-..|.+                         
T Consensus       154 s~~i--Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  154 SHEI--LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             CCcc--eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            3322  56677744466666666667777776642       1333332222221                         


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      -...++|+|.-+.++-...-..+.++|++-.+ +..  ++....+.++.. -.+....+++.-.+|.+.+|..+.
T Consensus       232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec-cCCCcceEEEEecCCeEEEEEeec
Confidence            01236778877666666667899999998765 322  222222222222 122456788999999999997654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.37  E-value=5.1e-05  Score=60.40  Aligned_cols=208  Identities=13%  Similarity=0.097  Sum_probs=113.2

Q ss_pred             CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccc
Q 021160           56 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED  135 (316)
Q Consensus        56 dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~  135 (316)
                      +|.|..||.++++.....            .+... .....+.....++.++++..++.|+.||..++            
T Consensus         2 ~g~l~~~d~~tG~~~W~~------------~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------   56 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSY------------DLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAKTG------------   56 (238)
T ss_dssp             TSEEEEEETTTTEEEEEE------------ECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred             CCEEEEEECCCCCEEEEE------------ECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence            678888998888733211            11001 12222223334445556668999999999888            


Q ss_pred             cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-ecCc---cceEEEEEcCCCCeEEE
Q 021160          136 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDR---HVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~s  211 (316)
                          +.+..+......  .....   ..+..++.++.++.++.+|..+|+.+... ....   ...........+..++.
T Consensus        57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (238)
T PF13360_consen   57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV  127 (238)
T ss_dssp             ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred             ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence                555555542211  11111   23556666778889999999999998874 3221   11122233334777788


Q ss_pred             EeCCCcEEEecCCCCCC---CCCCCCc--cc------ceeeeecCCCCceeEEecCCCe-EEEEEecccCcceeE-----
Q 021160          212 CGIEKTVKLWAPMPTDF---PPLPDNA--EK------IMKANKQGREDHSRITLTPDVI-MHVLRLQRRQTLAYR-----  274 (316)
Q Consensus       212 ~~~d~~i~iwd~~~~~~---~~~~~~~--~~------~~~~~~~~~~~~~~~s~~~d~~-~~~w~~~~~~~~~~~-----  274 (316)
                      +..++.|..+|++++++   ..+....  ..      ..... ...++ .+...+.++. +.+ |+.+++.. +.     
T Consensus       128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~  203 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP-VISDG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISG  203 (238)
T ss_dssp             EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE-ECCTT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-
T ss_pred             EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce-EEECC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCC
Confidence            88799999999998862   1121111  00      00111 11234 5555555654 444 77777533 32     


Q ss_pred             ---EeecccccccccCCCCeEEEEeccCCC
Q 021160          275 ---ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       275 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                         ........+...+.++.++++|...++
T Consensus       204 ~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  204 IYSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence               123333444444456778888777654

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.2e-05  Score=66.38  Aligned_cols=208  Identities=13%  Similarity=0.063  Sum_probs=137.6

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      .|+..|+.+.....  .++.+++.||.++.|-...-.-          .. ...+. ..|...|.+++.+-++.++.+ +
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG----------vE-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~   72 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG----------VE-FVKHF-RAHLGVILSLAVSYDGWLFRSVE   72 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCccc----------ee-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence            47888888776653  6999999999999998653110          01 12222 567888999999999998888 5


Q ss_pred             c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-C--cEEEEeccCCeEEEEeccCCe-
Q 021160          111 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D--EYVMSGSDCGHLFIWKKKGGK-  185 (316)
Q Consensus       111 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--~~l~~~~~dg~v~~wd~~~~~-  185 (316)
                      . |..++++|+++-                ....-++...-++.+..+ . ++. .  ...++.-.++.+.++|-.... 
T Consensus        73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv-~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~  134 (558)
T KOG0882|consen   73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWV-T-SKGDKISLIAVSLFKSGKIFVVDGFGDFC  134 (558)
T ss_pred             CcccceeEEEeecc----------------chhhhcccccCCCceEEe-c-CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence            5 899999999875                121111111111112221 1 221 1  223334568899999976433 


Q ss_pred             -eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC------CCCC-CCC------C--CcccceeeeecCCCCc
Q 021160          186 -LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP------TDFP-PLP------D--NAEKIMKANKQGREDH  249 (316)
Q Consensus       186 -~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~------~--~~~~~~~~~~~~~~~~  249 (316)
                       ....-.-|..+|..+.+.|.+..+++....|.|.-|....      ..+. .+.      +  ..........+++++.
T Consensus       135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~  214 (558)
T KOG0882|consen  135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA  214 (558)
T ss_pred             ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence             2333345899999999999999999999999999999874      1110 111      0  1122334445778888


Q ss_pred             eeEEecCCCeEEEEEecccCcc
Q 021160          250 SRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .+.+...|..|+++++.++...
T Consensus       215 qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  215 QISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cccccCcccEEEEEEeccchhh
Confidence            9999999999999999887544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.30  E-value=0.00012  Score=62.93  Aligned_cols=71  Identities=11%  Similarity=0.224  Sum_probs=60.0

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +.++++ +|+...++.|+.||.|.+||...+.....  ...-.++.++|||+|..+++|+..|.+.+||..-..
T Consensus       262 v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  262 VICCAR-SPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ceEEec-CcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            889998 99999999999999999999876643322  234567889999999999999999999999987543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.29  E-value=0.0009  Score=54.00  Aligned_cols=193  Identities=15%  Similarity=0.141  Sum_probs=107.1

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-----ecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-----GSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-----~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      ...+||.++.+....+......   .+-|      .-.|+++| ++|++.     ...|.|-|||...+-        ..
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gR---HFyG------Hg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~--------~r   90 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGR---HFYG------HGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGY--------RR   90 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCC---EEec------CEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCc--------EE
Confidence            3578999888766555443222   1222      46899999 677665     346889999998321        11


Q ss_pred             ceecccccccCCCcccEEEEEEccCCCeEEEecCC--------cEEEEEcCCCCCCCCccCCccccccCCCcceee----
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE--------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS----  146 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----  146 (316)
                      +..|      ..|.-.-..+.+.|+|+.|+.++.|        ..++ ++.++.    .++..-+..+.+.+....    
T Consensus        91 i~E~------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~----psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   91 IGEF------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQ----PSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EeEe------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcC----CceEEEecCCCceeeeeecCcc
Confidence            2222      3344445677899999755554322        2221 222221    011111112223443322    


Q ss_pred             CCcCCceeeeEEEecCCCcEEEEeccCCe-------EEEEeccCCeeEEEee-------cCccceEEEEEcCCCCeEEEE
Q 021160          147 GHRNSQTVKGVNFFGPNDEYVMSGSDCGH-------LFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFATC  212 (316)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------v~~wd~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~s~  212 (316)
                      -|...  |..+++ .++|..++..-..|.       +-+++  .++.+..+.       .-.+-+-+|++++++..++..
T Consensus       160 ~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  160 LHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             ccccc--eeeEEe-cCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence            23333  888888 777765554433332       23333  233233332       123578899999999886554


Q ss_pred             e-CCCcEEEecCCCCCCCC
Q 021160          213 G-IEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       213 ~-~d~~i~iwd~~~~~~~~  230 (316)
                      + .-+.+.+||..++.+..
T Consensus       235 sPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             CCCCCEEEEEECCCCCEee
Confidence            4 66789999999988443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=4.8e-05  Score=67.41  Aligned_cols=182  Identities=12%  Similarity=0.164  Sum_probs=116.0

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...++|++++-   ..|+-|+.+|.|++++....-                ... ..|...      ..+|++++++ .|
T Consensus        39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~----------------~~~-~~~s~~------~~~Gey~asCS~D   92 (846)
T KOG2066|consen   39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP----------------KTN-FDHSSS------ILEGEYVASCSDD   92 (846)
T ss_pred             hhHHHHHHhhc---ceeeeccccceEEEEecCCcc----------------ccc-cccccc------ccCCceEEEecCC
Confidence            45677777774   689999999999999987331                111 122222      5678899996 69


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-----CcEEEEeccCCeEEEEecc---CC
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GG  184 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~~wd~~---~~  184 (316)
                      |+|.|-.+-+.                +....+.-+   .++.++++ +|+     .+.+++|+..| +.++.-+   ..
T Consensus        93 Gkv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk  151 (846)
T KOG2066|consen   93 GKVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK  151 (846)
T ss_pred             CcEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence            99999988776                344434322   33889998 776     56788999888 7777632   22


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceee-----eecCCCCceeEEecCCC
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKA-----NKQGREDHSRITLTPDV  258 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~d~  258 (316)
                      ..+ .+....++|.++.|.  |.++|-++.+| |++||+..++ +..++.....+...     ..|. +...++-|-. .
T Consensus       152 ~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~~~~LVIGW~-d  225 (846)
T KOG2066|consen  152 DSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-DEDRLVIGWG-D  225 (846)
T ss_pred             cce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-CCCeEEEecC-C
Confidence            222 344566899999994  77899988665 7999998877 33333222222111     1122 2334444443 4


Q ss_pred             eEEEEEeccc
Q 021160          259 IMHVLRLQRR  268 (316)
Q Consensus       259 ~~~~w~~~~~  268 (316)
                      +|++..++.+
T Consensus       226 ~v~i~~I~~~  235 (846)
T KOG2066|consen  226 SVKICSIKKR  235 (846)
T ss_pred             eEEEEEEecc
Confidence            5677777633

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.29  E-value=0.00022  Score=66.27  Aligned_cols=172  Identities=11%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCC-------CCCc--eecccccccCC--------------
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTPV--DTFCPRHLIGK--------------   90 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~--------------   90 (316)
                      ..+|.+++|+|++ ..++..+..+++.+-+-. -..+.+-..       ...+  ..-...+-..+              
T Consensus       109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  109 DNGISAASWSPDE-ELLALITGRQTLLFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             cCceEEEeecCCC-cEEEEEeCCcEEEEEecc-ccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            4579999999999 788888887777665431 111100000       0000  00000000000              


Q ss_pred             -------CcccEEEEEEccCCCeEEEe-----cC-CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           91 -------NNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        91 -------~~~~i~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                             -.+.=+.+.|--||++++.+     .+ ..|++||-+ +                 .+........ ..-.++
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-----------------~Lns~se~~~-~l~~~L  247 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-----------------ALNSTSEPVE-GLQHSL  247 (1265)
T ss_pred             ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-----------------hhhcccCccc-ccccce
Confidence                   11123468999999977762     25 789999987 3                 1222211111 124678


Q ss_pred             EEecCCCcEEEEec---cCCeEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEE---EeCCCcEEEecCCCCC
Q 021160          158 NFFGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPTD  227 (316)
Q Consensus       158 ~~~~~~~~~l~~~~---~dg~v~~wd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s---~~~d~~i~iwd~~~~~  227 (316)
                      +| -|.|..+++--   .++.|.+|.-+   .|+....++.....+..++|+.++..||.   ......|++|-+.+..
T Consensus       248 sW-kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  248 SW-KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ee-cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            88 88999988753   46678888854   23333333334445899999999999876   4444459999987654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=9.8e-06  Score=66.95  Aligned_cols=187  Identities=12%  Similarity=0.111  Sum_probs=121.4

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCc
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      |+|+++.|--....-...  ....      ..|-+.|.+++.+-++ .++.+.+. |..++++|+++-...+.+....  
T Consensus        28 lDGh~KFWkKs~isGvEf--VKhF------raHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~--   96 (558)
T KOG0882|consen   28 LDGHKKFWKKSRISGVEF--VKHF------RAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVD--   96 (558)
T ss_pred             cchhhhhcCCCCccceee--hhhh------HHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccccc--
Confidence            567777776433221111  1111      1377889999999998 78888777 9999999998766433221111  


Q ss_pred             eecccccccCCCcccEEEEEEccCCC--eEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSE--LLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                             +    .+.+..+ .++...  .++.+  .++.+.++|-.....              +....-.-|.++  |.
T Consensus        97 -------l----Pg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--------------q~~~fkklH~sP--V~  148 (558)
T KOG0882|consen   97 -------L----PGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC--------------QDGYFKKLHFSP--VK  148 (558)
T ss_pred             -------C----CCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC--------------ccceecccccCc--eE
Confidence                   1    1112121 222211  33333  589999999765421              122233446655  99


Q ss_pred             eEEEecCCCcEEEEeccCCeEEEEeccC------CeeEEE---------eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021160          156 GVNFFGPNDEYVMSGSDCGHLFIWKKKG------GKLVRL---------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  220 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~------~~~~~~---------~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i  220 (316)
                      .+.+ .+.+..+++....|.|.-|....      .+....         +.-......++.|+|++..+.+-+.|..|++
T Consensus       149 ~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  149 KIRY-NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             EEEe-eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            9988 89999999999999999999772      111111         1122356789999999999999999999999


Q ss_pred             ecCCCCC
Q 021160          221 WAPMPTD  227 (316)
Q Consensus       221 wd~~~~~  227 (316)
                      +.+.+++
T Consensus       228 F~~KtGk  234 (558)
T KOG0882|consen  228 FVFKTGK  234 (558)
T ss_pred             EEeccch
Confidence            9998875

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=0.00012  Score=64.96  Aligned_cols=156  Identities=14%  Similarity=0.191  Sum_probs=109.4

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--------
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------  104 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------  104 (316)
                      |...-.++.|+|.|  +||-|+. ..|.+-|..+.+.++              .+ ..|...|+.+.|.|..        
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq--------------si-e~h~s~V~~VrWap~~~p~~llS~   75 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ--------------SI-ELHQSAVTSVRWAPAPSPRDLLSP   75 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh--------------cc-ccCccceeEEEeccCCCchhccCc
Confidence            34456789999988  6666654 678889988776332              22 6678889999998732        


Q ss_pred             ---C-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe--cCCC-cEEEEeccCCeE
Q 021160          105 ---E-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHL  176 (316)
Q Consensus       105 ---~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~l~~~~~dg~v  176 (316)
                         . +++++ -.|.|.+||....                .....+..+...  +.+++|.  -++. .+|++.....++
T Consensus        76 ~~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~l  137 (1062)
T KOG1912|consen   76 SSSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTL  137 (1062)
T ss_pred             cccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEE
Confidence               2 44555 3899999999887                455556666654  8888883  2233 567777788899


Q ss_pred             EEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCC
Q 021160          177 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       177 ~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~  224 (316)
                      .+|+..+|+.............++.+.|-. +.+..-+..|.+.+-+.-
T Consensus       138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence            999999999887766544566778888843 445555556777766643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=8.9e-05  Score=63.73  Aligned_cols=116  Identities=11%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             ceEEEEECCCCCcEEEEE----ecCCcE----EEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           36 RLNAIVIDPRNPNYFAVG----GSDEYA----RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g----~~dg~v----~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      ...++.|+...++.+.+-    +.+|.+    .+|++...++          +  +.....-.....+.+.+++|+...+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl----------q--rvsvtsipL~s~v~~ca~sp~E~kL  274 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL----------Q--RVSVTSIPLPSQVICCARSPSEDKL  274 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce----------e--EEEEEEEecCCcceEEecCcccceE
Confidence            345777877665666664    234443    3355543331          1  1111112346789999999998755


Q ss_pred             EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160          108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      +. +.||.|.+||...+                 ... +....-  ..+.++| +|+|..+++|+..|.+.+||+.-+
T Consensus       275 vlGC~DgSiiLyD~~~~-----------------~t~-~~ka~~--~P~~iaW-Hp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  275 VLGCEDGSIILYDTTRG-----------------VTL-LAKAEF--IPTLIAW-HPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEecCCeEEEEEcCCC-----------------eee-eeeecc--cceEEEE-cCCCcEEEEEcCCceEEEEEeecC
Confidence            54 68999999998765                 222 222222  2688998 999999999999999999997643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.17  E-value=4.1e-05  Score=68.81  Aligned_cols=179  Identities=11%  Similarity=0.089  Sum_probs=123.1

Q ss_pred             CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCC
Q 021160           46 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGL  124 (316)
Q Consensus        46 ~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~  124 (316)
                      ++..++.|+....+..+|+++.+...              .. .-....|.-+..  +++++.+| ..|+|.+-|.++. 
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r--------------~~-~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-  207 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETR--------------TT-NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-  207 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeee--------------ee-eccCCceEEEEe--cCcEEEeecccceEEeecCCcC-
Confidence            33567777777778888888775221              11 111223444433  45677776 6999999999887 


Q ss_pred             CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---------CCeEEEEeccCCeeEEEeecCcc
Q 021160          125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRH  195 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~~wd~~~~~~~~~~~~~~~  195 (316)
                                     +..+++..|.+.  +.++.   -.|+.|++++.         |..|++||++.-+.+..+.-+.+
T Consensus       208 ---------------~~iht~~aHs~s--iSDfD---v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~  267 (1118)
T KOG1275|consen  208 ---------------ETIHTFDAHSGS--ISDFD---VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG  267 (1118)
T ss_pred             ---------------ceeeeeeccccc--eeeee---ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC
Confidence                           789999999976  87765   46888888875         55689999998777766665554


Q ss_pred             ceEEEEEcCCCCe-EEEEeCCCcEEEecCCC---CC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          196 VVNQLEPHPHIPM-FATCGIEKTVKLWAPMP---TD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       196 ~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      + .-+.|+|.-.. ++.++..|...+-|..+   ..  ...+......+.... .++.+..++-+..+|.|.+|.
T Consensus       268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fD-iSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFD-ISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             c-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEE-ecCCCceEEEecccCcEeeec
Confidence            4 55788996543 77888889999888433   22  111222223344444 777888999999999999998

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.16  E-value=0.00047  Score=60.54  Aligned_cols=123  Identities=16%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      |...|.--+++..+ .+++.|++-|.+.+|+-..++...              ....+-.+.+.....+++..++|.+ .
T Consensus        32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~--------------~~~~~~~~~~~~~~vs~~e~lvAagt~   96 (726)
T KOG3621|consen   32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRK--------------LKNEGATGITCVRSVSSVEYLVAAGTA   96 (726)
T ss_pred             CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhc--------------ccccCccceEEEEEecchhHhhhhhcC
Confidence            34455555666666 899999999999999988776321              1112234445566677777777665 6


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~  183 (316)
                      .|.|.++-++....+....+...          -..|.  ..|++++| ++++..+++|...|.|.+-.+.+
T Consensus        97 ~g~V~v~ql~~~~p~~~~~~t~~----------d~~~~--~rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   97 SGRVSVFQLNKELPRDLDYVTPC----------DKSHK--CRVTALEW-SKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CceEEeehhhccCCCcceeeccc----------cccCC--ceEEEEEe-cccccEEeecCCCceEEEEEech
Confidence            88898888876521111110000          01134  34999999 99999999999999998877665

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.12  E-value=0.0013  Score=55.70  Aligned_cols=201  Identities=10%  Similarity=-0.008  Sum_probs=119.4

Q ss_pred             cceEEEEECCCCCcEEEEEecCC---------------cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEE-EE
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GL   98 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg---------------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~   98 (316)
                      ..|..+.|+|.+ +||.+=+...               .+.+||+.++.++..         +..    .......+ -+
T Consensus        72 ~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---------f~~----~~q~~~~Wp~~  137 (561)
T COG5354          72 PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---------FNG----ISQPYLGWPVL  137 (561)
T ss_pred             CCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEee---------ccc----cCCccccccee
Confidence            358899999998 8988854433               489999998874322         110    00011123 56


Q ss_pred             EEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC--cEEEE-----ec
Q 021160           99 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--EYVMS-----GS  171 (316)
Q Consensus        99 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~-----~~  171 (316)
                      .|+.+.++++--....++++++.....            . .+.+.++  ..  .+....| +|.+  ..|+.     ..
T Consensus       138 k~s~~D~y~ARvv~~sl~i~e~t~n~~------------~-~p~~~lr--~~--gi~dFsi-sP~~n~~~la~~tPEk~~  199 (561)
T COG5354         138 KFSIDDKYVARVVGSSLYIHEITDNIE------------E-HPFKNLR--PV--GILDFSI-SPEGNHDELAYWTPEKLN  199 (561)
T ss_pred             eeeecchhhhhhccCeEEEEecCCccc------------c-Cchhhcc--cc--ceeeEEe-cCCCCCceEEEEccccCC
Confidence            788877765554566789999732200            0 0111222  12  2777777 6653  22332     35


Q ss_pred             cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-----------CCCcEEEecCCCCCCCCCCCCccccee
Q 021160          172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-----------IEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      ..+.+++|.+..++.+.+-.-....-..+.|++.|++|+.--           ....++|++++...+....+..++|..
T Consensus       200 kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhd  279 (561)
T COG5354         200 KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHD  279 (561)
T ss_pred             CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccccee
Confidence            577899999886665544332233334688999998854221           124578888886655544455677888


Q ss_pred             eeecCCCCcee--EEecCCCeEEEEEeccc
Q 021160          241 ANKQGREDHSR--ITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       241 ~~~~~~~~~~~--~s~~~d~~~~~w~~~~~  268 (316)
                      .. |.+.++.+  ++|-....+.+++++..
T Consensus       280 f~-W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         280 FT-WEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ee-ecccCCceeEEecccccceeecccccc
Confidence            87 55544433  44457788888887654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.07  E-value=0.00069  Score=57.27  Aligned_cols=154  Identities=16%  Similarity=0.190  Sum_probs=104.0

Q ss_pred             CcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEe
Q 021160           91 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  170 (316)
Q Consensus        91 ~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  170 (316)
                      -.-++..+.|||.|.+|++..-..|.+|.-...                ..+..+. |.+   |..+.| +|.+.+|.+=
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~-~~~---V~~~~f-SP~~kYL~tw   89 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFR-HPD---VKYLDF-SPNEKYLVTW   89 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccch----------------hheeeee-cCC---ceeccc-Ccccceeeee
Confidence            456788899999999999987778999997765                3444444 322   888998 9999999986


Q ss_pred             ccCC---------------eEEEEeccCCeeEEEeecCccc--eE-EEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC
Q 021160          171 SDCG---------------HLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP  232 (316)
Q Consensus       171 ~~dg---------------~v~~wd~~~~~~~~~~~~~~~~--v~-~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~  232 (316)
                      +..+               .+.+||..+|..+..+.....+  .+ -+.|+-+.+++|=.. ...++|+++ +..+...+
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p  167 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHP  167 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCc
Confidence            6544               4999999999999988765544  44 678998888865442 357999997 33322221


Q ss_pred             CC---cccceeeeecCCC--CceeEE-----ecCCCeEEEEEeccc
Q 021160          233 DN---AEKIMKANKQGRE--DHSRIT-----LTPDVIMHVLRLQRR  268 (316)
Q Consensus       233 ~~---~~~~~~~~~~~~~--~~~~~s-----~~~d~~~~~w~~~~~  268 (316)
                      -+   ...+.... ++++  ...++.     ....+++++|.+...
T Consensus       168 ~~~lr~~gi~dFs-isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~  212 (561)
T COG5354         168 FKNLRPVGILDFS-ISPEGNHDELAYWTPEKLNKPAMVRILSIPKN  212 (561)
T ss_pred             hhhccccceeeEE-ecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence            11   12333343 3442  223343     334578888887654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.05  E-value=0.003  Score=54.48  Aligned_cols=188  Identities=11%  Similarity=0.003  Sum_probs=102.6

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      ..++.+..++.+..+|..+++.........+...     . .+...++    .. ++.+++...++.+..+|..++    
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----~-~~~~sP~----v~-~~~v~~~~~~g~v~a~d~~~G----  225 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----L-RGESAPA----TA-FGGAIVGGDNGRVSAVLMEQG----  225 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----c-cCCCCCE----EE-CCEEEEEcCCCEEEEEEccCC----
Confidence            3566778889999999999985433211110000     0 0111111    11 244555567888888888877    


Q ss_pred             CccCCccccccCCCcceeeCCc--CCc---eeeeEEEecC--CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE
Q 021160          128 PLSLSPEDLQKREEPQVYSGHR--NSQ---TVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL  200 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~i~~~~~~~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  200 (316)
                                  +.........  ...   ....+.. +|  .+..++.++.+|.+..+|..+|+.+-....  .....+
T Consensus       226 ------------~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~  290 (394)
T PRK11138        226 ------------QLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDF  290 (394)
T ss_pred             ------------hhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCc
Confidence                        2222221100  000   0001111 12  245677777899999999999987655432  111122


Q ss_pred             EEcCCCCeEEEEeCCCcEEEecCCCCCC-CCCCCCcccceeeeecCC--CCceeEEecCCCeEEEEEecccCcc
Q 021160          201 EPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       201 ~~~p~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ..  .+..+..++.++.+..+|..+++. -..........    .++  .+..++.++.+|.+..+|..+++..
T Consensus       291 ~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~----~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        291 AV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL----TAPVLYNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc----cCCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence            22  345666777899999999988762 11111011110    111  2456777888999999998887543

>smart00320 WD40 WD40 repeats

Probab=98.04  E-value=2.3e-05  Score=41.97  Aligned_cols=39  Identities=26%  Similarity=0.476  Sum_probs=34.4

Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160          184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd  222 (316)
                      ++++..+..|...|.+++|+|.+..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.0015  Score=58.78  Aligned_cols=197  Identities=10%  Similarity=0.082  Sum_probs=110.7

Q ss_pred             EECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecC-C----
Q 021160           41 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YND-E----  113 (316)
Q Consensus        41 ~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d-~----  113 (316)
                      +|++.+ ..++.|+.+|.|.+.+-.-.-          +..|      .++...+...-+.-++ .+|++ +.| +    
T Consensus        30 c~~s~~-~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~   92 (933)
T KOG2114|consen   30 CCSSST-GSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV   92 (933)
T ss_pred             EEcCCC-ceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence            356656 799999999999888754211          0111      3444443333344444 57777 543 3    


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCc--ceeeC---CcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc----CC
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEP--QVYSG---HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK----GG  184 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~----~~  184 (316)
                      .+++|+++......+.          ..+  ..+.+   ..++.++.+++. +.+-+.+++|-.+|.|..+.-.    .|
T Consensus        93 llkiw~lek~~~n~sP----------~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSP----------QCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EEEEecccccCCCCCc----------ceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence            5899999875322110          111  11122   222334778887 7888999999999999988622    12


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                      ....-......+|+.+++..+++.++-+..-..|.+|.+.+..  ...+..+...+ .+..+......++.++ +..+.+
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~l-nCss~~~~t~qfIca~-~e~l~f  239 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISL-NCSSFSDGTYQFICAG-SEFLYF  239 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccc-eeeecCCCCccEEEec-CceEEE
Confidence            2122222235799999999888873333445689999998655  22233333332 2222222222244433 344566


Q ss_pred             EEecc
Q 021160          263 LRLQR  267 (316)
Q Consensus       263 w~~~~  267 (316)
                      ++...
T Consensus       240 Y~sd~  244 (933)
T KOG2114|consen  240 YDSDG  244 (933)
T ss_pred             EcCCC
Confidence            66543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.00022  Score=63.99  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      +-.+++++|+|.. -.|+.|-.-|.+.+|...+.+               ..++...|+.+|..+.|+++|..++++ .-
T Consensus        59 P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~  122 (1416)
T KOG3617|consen   59 PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSHDGTVLMTLDNP  122 (1416)
T ss_pred             ceehhhhccChHH-HHHhhccccceeEEEecCCce---------------eeeeccCCCCCceeEEecCCCCeEEEcCCC
Confidence            4456789999987 788889899999999988664               344447789999999999999999997 68


Q ss_pred             CcEEEEEcCC
Q 021160          113 ELVYLFEKNM  122 (316)
Q Consensus       113 ~~i~iwd~~~  122 (316)
                      |.+.+|....
T Consensus       123 g~v~lwr~d~  132 (1416)
T KOG3617|consen  123 GSVHLWRYDV  132 (1416)
T ss_pred             ceeEEEEeee
Confidence            9999998873

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.98  E-value=0.0018  Score=55.75  Aligned_cols=213  Identities=7%  Similarity=-0.026  Sum_probs=116.1

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      ..++.++.++.+..+|.++++........                ..+.+--.-.++.+++...++.++-+|..++    
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~----------------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG----  180 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA----------------GEALSRPVVSDGLVLVHTSNGMLQALNESDG----  180 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCC----------------CceecCCEEECCEEEEECCCCEEEEEEccCC----
Confidence            45677788999999999999844321111                1111100111445566667889999999888    


Q ss_pred             CccCCccccccCCCcceeeCCcCCce---eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc-------ce
Q 021160          128 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV  197 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-------~v  197 (316)
                                  +.+-.+........   ..+-..   .+..++.++.+|.+..+|..+|+.+........       ..
T Consensus       181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence                        44433332110000   001111   134567778899999999999887654431100       01


Q ss_pred             EEEEEcC--CCCeEEEEeCCCcEEEecCCCCCCC-CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160          198 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       198 ~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~  274 (316)
                      ..+.-+|  .+..+..++.++.+..+|+.+++.. ... ... ...   ....+..+..++.++.+..+|..+++. .+.
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~-~~~---~~~~~~~vy~~~~~g~l~ald~~tG~~-~W~  319 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YGS-VND---FAVDGGRIYLVDQNDRVYALDTRGGVE-LWS  319 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CCC-ccC---cEEECCEEEEEcCCCeEEEEECCCCcE-EEc
Confidence            1111222  2445666677899999999887621 111 000 000   111344566677788888888776632 221


Q ss_pred             -E-------eec--ccccccccCCCCeEEEEeccCCC
Q 021160          275 -E-------RRY--NAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       275 -~-------~~~--~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                       .       ..|  ....+...+.+|.++++|..+++
T Consensus       320 ~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        320 QSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             ccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence             0       011  22344445677888888887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.92  E-value=0.0021  Score=53.75  Aligned_cols=186  Identities=10%  Similarity=0.071  Sum_probs=111.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC---CCcEEEEEec----------CCcEEEEeCcCCcc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGS----------DEYARVYDIRKCHW   69 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~~~l~~g~~----------dg~v~~wd~~~~~~   69 (316)
                      +.|++.|..+.+....+.....+       +-..+..+.+..+   ...+|++|+.          .|.|.++++.....
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E-------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~   74 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNE-------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE   74 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTE-------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred             cEEEEEeCCCCeEEEEEECCCCc-------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence            57899998888766666665444       2233344445432   1368888753          28899999987410


Q ss_pred             cCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           70 YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                           ....++....    ....++|++++-. .+ .|+.+.++.|++|++...                +.+.....+.
T Consensus        75 -----~~~~l~~i~~----~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~----------------~~l~~~~~~~  127 (321)
T PF03178_consen   75 -----NNFKLKLIHS----TEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNS----------------KTLLKKAFYD  127 (321)
T ss_dssp             --------EEEEEEE----EEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETT----------------SSEEEEEEE-
T ss_pred             -----cceEEEEEEE----EeecCcceEhhhh-CC-EEEEeecCEEEEEEccCc----------------ccchhhheec
Confidence                 0001111111    2236778888766 33 477777899999999876                3122222222


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      ....+.++..   .+++++.|.....+.++..+. ++.+..+.  .....++++.+-+++..++.+..+|.+.++....
T Consensus       128 ~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  128 SPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ceEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            2223677765   366999999888888886553 33233332  2345688888886767899999999999988753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.0019  Score=57.15  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=72.6

Q ss_pred             EccCCCeEEEecCCcEEEEEcCC----CCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CC
Q 021160          100 YSNTSELLISYNDELVYLFEKNM----GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG  174 (316)
Q Consensus       100 ~~~~~~~l~s~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg  174 (316)
                      +.++|++... .++.|.+.|..+    +.               +.+..+....   ....+++ +|||+++++++. +.
T Consensus       284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~---------------~v~~yIPVGK---sPHGV~v-SPDGkylyVanklS~  343 (635)
T PRK02888        284 AVKAGKFKTI-GGSKVPVVDGRKAANAGS---------------ALTRYVPVPK---NPHGVNT-SPDGKYFIANGKLSP  343 (635)
T ss_pred             hhhCCCEEEE-CCCEEEEEECCccccCCc---------------ceEEEEECCC---CccceEE-CCCCCEEEEeCCCCC
Confidence            3446664433 467899999876    20               2334343322   2788998 999999877664 89


Q ss_pred             eEEEEeccCCee------------EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          175 HLFIWKKKGGKL------------VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       175 ~v~~wd~~~~~~------------~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      +|.+.|+.+.+.            ......- ......+|.++|+...|-..|..|..|++..
T Consensus       344 tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999999887442            3333322 2345678999998888888999999999865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.00038  Score=59.82  Aligned_cols=161  Identities=13%  Similarity=0.145  Sum_probs=94.9

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEE--eCcCCcccCCCCCCCCcee
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY--DIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~w--d~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.++|+.+.+...+...            .+.-..-+|+|+|.+++++...||...||  |+..+..            
T Consensus       219 ~i~~~~l~~g~~~~i~~~------------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~------------  274 (425)
T COG0823         219 RIYYLDLNTGKRPVILNF------------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL------------  274 (425)
T ss_pred             eEEEEeccCCccceeecc------------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc------------
Confidence            477788887776666553            22345678999997777777788876655  5544431            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe--cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY--NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                        .. + ....+.-..-.|+|+|+.++-.  ..|  .|.+++.+..                 ....+......  -..-
T Consensus       275 --~~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----------------~~~riT~~~~~--~~~p  331 (425)
T COG0823         275 --PR-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----------------QVTRLTFSGGG--NSNP  331 (425)
T ss_pred             --ee-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----------------ceeEeeccCCC--CcCc
Confidence              11 1 1112222366899999966553  344  3677777665                 22333322221  1134


Q ss_pred             EEecCCCcEEEEeccC-Ce--EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021160          158 NFFGPNDEYVMSGSDC-GH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~d-g~--v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      .+ +|+|++|+..+.. |.  |.+.|+.++.-.+.+. .........|.|++..+...+
T Consensus       332 ~~-SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         332 VW-SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             cC-CCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            45 9999999887743 33  6666666655444333 334445567888888766554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.002  Score=55.54  Aligned_cols=156  Identities=10%  Similarity=0.016  Sum_probs=92.4

Q ss_pred             cceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      ..+..-+|+|++..+....-..   ..+.++++.+++..       .+-+         -...-...+|+|+|+.|+-+ 
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------~i~~---------~~g~~~~P~fspDG~~l~f~~  256 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------VILN---------FNGNNGAPAFSPDGSKLAFSS  256 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------eeec---------cCCccCCccCCCCCCEEEEEE
Confidence            4567788999985444333222   34889999988621       1111         12233467899999855543 


Q ss_pred             -cCCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-C--eEEEEeccCC
Q 021160          111 -NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGG  184 (316)
Q Consensus       111 -~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~  184 (316)
                       .|+.  |+++|+..+                . ...+......  -..=.| +|+|++|+-.++. |  .|.+++++.+
T Consensus       257 ~rdg~~~iy~~dl~~~----------------~-~~~Lt~~~gi--~~~Ps~-spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         257 SRDGSPDIYLMDLDGK----------------N-LPRLTNGFGI--NTSPSW-SPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CCCCCccEEEEcCCCC----------------c-ceecccCCcc--ccCccC-CCCCCEEEEEeCCCCCcceEEECCCCC
Confidence             4554  777787776                2 2223322221  123345 9999999887653 3  4777777766


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeC-CCc--EEEecCCCCC
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD  227 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~--i~iwd~~~~~  227 (316)
                      .. ..+......-..-.|+|+|++|+..+. +|.  |.+.++.++.
T Consensus       317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            54 344333333336789999999876663 344  6666665544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.85  E-value=0.0064  Score=47.39  Aligned_cols=148  Identities=11%  Similarity=0.044  Sum_probs=92.6

Q ss_pred             EECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEE
Q 021160           41 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFE  119 (316)
Q Consensus        41 ~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd  119 (316)
                      ...++...+++.|+..+.+.--|..++++..+             .+   -...|.+-+.- -|.+++. +..|.+++.+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------------~i---lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~   79 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------------AI---LGVRIECSAIV-VGDFVVLGCYSGGLYFLC   79 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEee-------------hh---hCceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence            33444447899999999999999998874321             11   12233333332 3555555 5899999999


Q ss_pred             cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEE
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ  199 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~  199 (316)
                      ..++                .....+..-..   |.+-+-..+++..|.+|+.|++.+..|.++..++...+...+...+
T Consensus        80 ~~tG----------------s~~w~f~~~~~---vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   80 VKTG----------------SQIWNFVILET---VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS  140 (354)
T ss_pred             ecch----------------hheeeeeehhh---hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence            9988                44444443222   3222223778999999999999999999998888876644443444


Q ss_pred             EEEcC-CCCeEEEEeCCCcEEEecCCC
Q 021160          200 LEPHP-HIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       200 ~~~~p-~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      -+..| ++.+ ..+...|.+.--..+.
T Consensus       141 P~i~~g~~sl-y~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  141 PVIAPGDGSL-YAAITAGAVLAVTKNP  166 (354)
T ss_pred             ceecCCCceE-EEEeccceEEEEccCC
Confidence            55666 3333 3333345444434433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.84  E-value=0.0022  Score=54.71  Aligned_cols=218  Identities=14%  Similarity=0.206  Sum_probs=113.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC-CC------------------------CC---CCCceecccccc
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-PI------------------------SS---DTPVDTFCPRHL   87 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~-~~------------------------~~---~~~~~~~~~~~~   87 (316)
                      .|+.+.|.+.. .-|++|...|.|.||.....+... ..                        ..   +.--+.|.+..+
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58899999987 789999999999999876543221 00                        00   000123444555


Q ss_pred             cCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcce------eeCCcCCceeeeEEEe-
Q 021160           88 IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV------YSGHRNSQTVKGVNFF-  160 (316)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~-  160 (316)
                      .....++|++++.+.-|-..++..+|.+.|.|++.+                ..+..      +..+.....++++.|. 
T Consensus        82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~v  145 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFSV  145 (395)
T ss_dssp             E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred             eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEEE
Confidence            556688999999985554444457999999999876                22221      1111222347777772 


Q ss_pred             ---cCCC---cEEEEeccCCeEEEEeccC---Cee----EEEeecCccceEEEE-EcCC--------------------C
Q 021160          161 ---GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH--------------------I  206 (316)
Q Consensus       161 ---~~~~---~~l~~~~~dg~v~~wd~~~---~~~----~~~~~~~~~~v~~~~-~~p~--------------------~  206 (316)
                         ..|+   -.+++|+..|.+.+|.+..   +..    ......+.++|..+. ++.+                    -
T Consensus       146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i  225 (395)
T PF08596_consen  146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI  225 (395)
T ss_dssp             EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred             EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence               2233   4788999999999998641   211    111123445555543 3211                    1


Q ss_pred             CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeec-----CCCCceeEEecCCCeEEEEEecccCcc
Q 021160          207 PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ-----GREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       207 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +.++....+..+|++.+...+ .+...... .....+.+     ...+..+++...+|.++++.+..-+..
T Consensus       226 ~g~vVvvSe~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  226 PGYVVVVSESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             -EEEEEE-SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             CcEEEEEcccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            123333447889999988765 21111111 11111112     224668899999999999998765433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.0032  Score=56.81  Aligned_cols=168  Identities=13%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             CCCcEEEEEecCCc-----EEEEeCcCCcccCCCCCCCCceeccccccc-CCCcccEEEEEEccCCCeEEEe-cCCcEEE
Q 021160           45 RNPNYFAVGGSDEY-----ARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISY-NDELVYL  117 (316)
Q Consensus        45 ~~~~~l~~g~~dg~-----v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~d~~i~i  117 (316)
                      ++.++|++-+.|++     +++|+++.-+-.   +.+..+......+.. .....++.+++.+.+-+.+|.| .+|.|..
T Consensus        75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n---~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~  151 (933)
T KOG2114|consen   75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN---NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVIC  151 (933)
T ss_pred             cCceEEEEEeecCCCCceEEEEecccccCCC---CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEE
Confidence            34367777766654     899999855311   001112111111111 2246778899999887888887 7999988


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee--EEEeecCcc
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLMVGDRH  195 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~--~~~~~~~~~  195 (316)
                      +.=+-.             .. +-.+.-..|....+|+.+++ ..++..++....-..|.+|.+. |+.  ...+..|..
T Consensus       152 ~~GDi~-------------RD-rgsr~~~~~~~~~pITgL~~-~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~  215 (933)
T KOG2114|consen  152 YKGDIL-------------RD-RGSRQDYSHRGKEPITGLAL-RSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGI  215 (933)
T ss_pred             EcCcch-------------hc-cccceeeeccCCCCceeeEE-ecCCceeEEEEecceeEEEEec-CCCcceeeeccCCc
Confidence            853211             00 11122333555566999999 5556553333334678999987 443  444667778


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  232 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~  232 (316)
                      ..+|..+++....|+.++ +..+.+|+..... ..++.
T Consensus       216 ~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  216 SLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            899999998776566655 4689999988665 44454

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0003  Score=61.69  Aligned_cols=132  Identities=13%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             cccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEE
Q 021160           92 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      ...+.--++...+++++.| +-|.+++|+-..+                 ..+.++.. ... .+..+.. +++..++|.
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-----------------~~~~~~~~~~~~-~~~~~~v-s~~e~lvAa   93 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-----------------EMRKLKNEGATG-ITCVRSV-SSVEYLVAA   93 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCch-----------------hhhcccccCccc-eEEEEEe-cchhHhhhh
Confidence            3344444455667777775 7899999997766                 22223221 211 1333444 888999999


Q ss_pred             eccCCeEEEEeccCCee---EE--Ee-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccc
Q 021160          170 GSDCGHLFIWKKKGGKL---VR--LM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKI  238 (316)
Q Consensus       170 ~~~dg~v~~wd~~~~~~---~~--~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~  238 (316)
                      |+..|.|.++-++.+.+   +.  .+ ..|...|++++|++++..+.+|...|+|..-.+....     .+.+......|
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I  173 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI  173 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence            99999999998876432   11  11 2377899999999999999999999999888777621     23333344555


Q ss_pred             eeee
Q 021160          239 MKAN  242 (316)
Q Consensus       239 ~~~~  242 (316)
                      +++.
T Consensus       174 VQlD  177 (726)
T KOG3621|consen  174 VQLD  177 (726)
T ss_pred             EEee
Confidence            5554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.78  E-value=0.002  Score=43.44  Aligned_cols=102  Identities=16%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             eEEEEE---CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           37 LNAIVI---DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        37 v~~~~~---~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      |++|++   .-+|.+.|++|+.|..||+|+-..--                ..+  ...+.|+++.-...+++..+-.+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~Ei--~e~~~v~~L~~~~~~~F~Y~l~NG   63 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AEI--TETDKVTSLCSLGGGRFAYALANG   63 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EEE--ecccceEEEEEcCCCEEEEEecCC
Confidence            455554   45666899999999999999865321                111  124678888877776666666899


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC---cEEEEeccCCeEE
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF  177 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~v~  177 (316)
                      +|-+|+-...                  +...+...   .+.+++++..++   .-|++|-.+|.|-
T Consensus        64 TVGvY~~~~R------------------lWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   64 TVGVYDRSQR------------------LWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEeCcce------------------eeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9999986432                  22223222   266676645443   2577787788764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.77  E-value=8.3e-06  Score=70.35  Aligned_cols=163  Identities=16%  Similarity=0.228  Sum_probs=101.4

Q ss_pred             CCccceEEEEECCCCCcEEEEEe----cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      +|....++++|++-+.+.||+|-    .|..+.|||+.++-..       |....   .+..+......+++|..+.+++
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke~~---~fs~~~l~gqns~cwlrd~klv  169 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKESP---LFSSSTLDGQNSVCWLRDTKLV  169 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Ccccc---ccccccccCccccccccCcchh
Confidence            57788999999998767888873    4778999999876210       11110   0101123344578888777777


Q ss_pred             EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEEec-cCC
Q 021160          108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKK-KGG  184 (316)
Q Consensus       108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~wd~-~~~  184 (316)
                      .+| ....++++|++..                 ..+...-.+  +.+..+.. .| .+.++++-. ||.|-+||. ..-
T Consensus       170 laGm~sr~~~ifdlRqs-----------------~~~~~svnT--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rni  228 (783)
T KOG1008|consen  170 LAGMTSRSVHIFDLRQS-----------------LDSVSSVNT--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRNI  228 (783)
T ss_pred             hcccccchhhhhhhhhh-----------------hhhhhhhhh--hhccccee-cCCCCCceeccc-cCceeeccchhhh
Confidence            776 5779999999854                 111111112  12445555 55 677776655 999999993 322


Q ss_pred             -eeEEEeecCc----cceEEEEEcCCCCe-EEEEe-CCCcEEEecCCC
Q 021160          185 -KLVRLMVGDR----HVVNQLEPHPHIPM-FATCG-IEKTVKLWAPMP  225 (316)
Q Consensus       185 -~~~~~~~~~~----~~v~~~~~~p~~~~-l~s~~-~d~~i~iwd~~~  225 (316)
                       +++..+...+    ..+..++|+|...- +++.. ..++|+++++..
T Consensus       229 enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  229 ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence             2222222111    35889999997643 55555 457899999763

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.74  E-value=0.011  Score=48.61  Aligned_cols=183  Identities=11%  Similarity=-0.013  Sum_probs=101.9

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCccc
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWY   70 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~   70 (316)
                      |.+.|.|.|..+.+.+..+...             -.-.+..+|++ +.+++++          ..-.|.+||..+.+..
T Consensus        15 ~~~rv~viD~d~~k~lGmi~~g-------------~~~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~   80 (342)
T PF06433_consen   15 MTSRVYVIDADSGKLLGMIDTG-------------FLGNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT   80 (342)
T ss_dssp             SSEEEEEEETTTTEEEEEEEEE-------------SSEEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             ccceEEEEECCCCcEEEEeecc-------------cCCceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence            4577889998887766666554             23357789998 6666532          3456999999988644


Q ss_pred             CCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160           71 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                      .++..+..-+     .. ..  .....++++.+++++...+   -..|.+-|+..+                +.+..+..
T Consensus        81 ~EI~iP~k~R-----~~-~~--~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~----------------kvv~ei~~  136 (342)
T PF06433_consen   81 GEIEIPPKPR-----AQ-VV--PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK----------------KVVGEIDT  136 (342)
T ss_dssp             EEEEETTS-B--------BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT----------------EEEEEEEG
T ss_pred             ceEecCCcch-----he-ec--ccccceEEccCCcEEEEEccCCCCeEEEEECCCC----------------ceeeeecC
Confidence            3322221100     00 00  0112346778887555532   566888888766                55554443


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEee----cCccce-EEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMV----GDRHVV-NQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~----~~~~~v-~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                      ..     +...| +..++-+.+-|.||.+.-..+. .|+......    .-..++ ..-++...+..++--+.+|.|+--
T Consensus       137 PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~  210 (342)
T PF06433_consen  137 PG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA  210 (342)
T ss_dssp             TS-----EEEEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred             CC-----EEEEE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence            22     12223 3334557788889999988887 465542221    111222 233444444555556788888888


Q ss_pred             cCCCCC
Q 021160          222 APMPTD  227 (316)
Q Consensus       222 d~~~~~  227 (316)
                      |+....
T Consensus       211 dlsg~~  216 (342)
T PF06433_consen  211 DLSGDS  216 (342)
T ss_dssp             EETTSS
T ss_pred             eccCCc
Confidence            877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00026  Score=61.30  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +.-+.| +|.-.++|.+..+|.+.+..+. .+.+.+++-|...++ +++|.|||+.||.|=.||+|++.|+.++.
T Consensus        23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            788888 9999999999999999999988 777888886776676 99999999999999999999999999886

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.68  E-value=0.0023  Score=58.75  Aligned_cols=94  Identities=15%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             eeeEEEEeeCCCcceEEE--eccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFY--CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ..|..||.|-... +++.  .+...       .....+|++-+.+|  +||+|+.+|.||+||- .++            
T Consensus       552 n~lfriDpR~~~~-k~v~~~~k~Y~-------~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~------------  608 (794)
T PF08553_consen  552 NSLFRIDPRLSGN-KLVDSQSKQYS-------SKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK------------  608 (794)
T ss_pred             CceEEeccCCCCC-ceeeccccccc-------cCCCceEEEecCCc--eEEEEeCCCcEEeecc-cch------------
Confidence            3567788886542 2221  11111       24567888888877  8999999999999994 333            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcC
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN  121 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~  121 (316)
                        ..++.+.+-..+|..|..+.||+++++..+..+.+++..
T Consensus       609 --~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  609 --RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             --hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence              455555677899999999999998888888999999874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.66  E-value=0.017  Score=45.14  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=37.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCccc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY   70 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~   70 (316)
                      .|.|++.+.++......+.....-          .+ .....+++ .++.+|+.|+..+..|.++..+.
T Consensus        72 ~g~lYfl~~~tGs~~w~f~~~~~v----------k~-~a~~d~~~-glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   72 SGGLYFLCVKTGSQIWNFVILETV----------KV-RAQCDFDG-GLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             cCcEEEEEecchhheeeeeehhhh----------cc-ceEEcCCC-ceEEEecCCCcEEEecccccceE
Confidence            466777777777544444432111          12 22345666 79999999999999999987743

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=0.00012  Score=55.53  Aligned_cols=105  Identities=14%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160          105 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       105 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      ++++.+.+|.|++|+.....               .....+......  +.++--...++.+..+++.+|.|+.|+++.+
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g---------------~~~d~~~s~~e~--i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEG---------------AHSDRVCSGEES--IDLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             eEEeecccceEEEecCCccc---------------hHHHhhhccccc--ceeccccccccceeEEeccCCceeeeccccC
Confidence            35555689999999986331               111112211211  2222111334558889999999999999988


Q ss_pred             eeEEEeecCc-cceEEEEEcCCCCeEEEE--eCCCcEEEecCCCC
Q 021160          185 KLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPMPT  226 (316)
Q Consensus       185 ~~~~~~~~~~-~~v~~~~~~p~~~~l~s~--~~d~~i~iwd~~~~  226 (316)
                      +.+.....|. ..+..+..+..++.++.+  |.|..++.|++..-
T Consensus       135 k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  135 KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            8887777676 445555555555566655  66677777776543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.60  E-value=0.023  Score=45.11  Aligned_cols=167  Identities=12%  Similarity=0.118  Sum_probs=93.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...++.++|+|+...++++....+.|..++.. ++++..            ..+ .+ .+....+++..++.++++. .+
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~------------i~l-~g-~~D~EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR------------IPL-DG-FGDYEGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE------------EE--SS--SSEEEEEE-STTEEEEEETTT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE------------EeC-CC-CCCceeEEEECCCEEEEEEcCC
Confidence            34699999999865788888889999888874 553211            111 22 3457789998888777776 58


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceee--CC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC---Cee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKL  186 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---~~~  186 (316)
                      +.+.++++.......    ..      ...+.+.  .. .....+..++| ++.++.|+.+-+..-..+|.++.   ...
T Consensus        86 ~~L~~~~~~~~~~~~----~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSL----DR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             TEEEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             CcEEEEEEecccccc----ch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            999999985431000    00      0111111  11 12234899999 88877777777777777777653   222


Q ss_pred             EEEe--e------cCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160          187 VRLM--V------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       187 ~~~~--~------~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~  226 (316)
                      +...  .      .....+.+++++|.... ++....+..|..+|....
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence            2111  1      12345788999997544 666778888999995554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00043  Score=56.76  Aligned_cols=84  Identities=11%  Similarity=0.051  Sum_probs=67.9

Q ss_pred             CCcceeeCCcCCceeeeEEEecCCCc-EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCc
Q 021160          140 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT  217 (316)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~  217 (316)
                      +..+.+.++.  ..|.+++| +|... ++..++.+..|++.|+++...+..+..+ ..+++++|.-+... |..|-..|.
T Consensus       184 kssq~lp~~g--~~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  184 KSSQILPGEG--SFIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             chhhcccccc--hhhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence            4445445555  34999999 67655 8899999999999999999999888888 68999999988765 666778899


Q ss_pred             EEEecCCCCC
Q 021160          218 VKLWAPMPTD  227 (316)
Q Consensus       218 i~iwd~~~~~  227 (316)
                      |.|||++..+
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999998654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.52  E-value=0.003  Score=57.93  Aligned_cols=146  Identities=11%  Similarity=0.198  Sum_probs=86.9

Q ss_pred             cEEEEE-ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc------CCCeEEEecCCcEEEEEc
Q 021160           48 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN------TSELLISYNDELVYLFEK  120 (316)
Q Consensus        48 ~~l~~g-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~s~~d~~i~iwd~  120 (316)
                      ++|+.. .....|+-.|++.|++..+...              ....+|..++-..      ....+++-++..+..||.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~--------------~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDp  559 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKV--------------HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDP  559 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeec--------------CCCcceeEecccccccccCCCceEEEECCCceEEecc
Confidence            444443 4567788889998885432111              1112233332211      112455557899999999


Q ss_pred             CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE
Q 021160          121 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL  200 (316)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  200 (316)
                      +.... .        +- ....+.+. ..  ....|++- + ...+||+|+.+|.||+||--..+....+++-..+|..|
T Consensus       560 R~~~~-k--------~v-~~~~k~Y~-~~--~~Fs~~aT-t-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i  624 (794)
T PF08553_consen  560 RLSGN-K--------LV-DSQSKQYS-SK--NNFSCFAT-T-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI  624 (794)
T ss_pred             CCCCC-c--------ee-eccccccc-cC--CCceEEEe-c-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence            86410 0        00 00111121 11  22677765 4 45579999999999999954333334556767899999


Q ss_pred             EEcCCCCeEEEEeCCCcEEEecC
Q 021160          201 EPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       201 ~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      ..+.||++++..+ +..+.+++.
T Consensus       625 Dvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  625 DVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EecCCCcEEEEee-cceEEEEEE
Confidence            9999999966555 567777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=0.00023  Score=64.26  Aligned_cols=125  Identities=16%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             CCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC-
Q 021160          139 REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK-  216 (316)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~-  216 (316)
                      .+..+.|..+...  .+|++| +.+.++|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+. .. 
T Consensus      1091 Fr~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence            3556667777755  899999 899999999999999999999999999999999999999999999988665543 33 


Q ss_pred             cEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          217 TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       217 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ...+|+....-  .+++.+.     ....++......+.++......++|+++...+
T Consensus      1168 lsaLW~~~s~~~~~Hsf~ed-----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED-----KAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             hHHHhccccccCcccccccc-----ceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            56789986532  3333321     22223333334444555566788999887554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.47  E-value=0.058  Score=46.65  Aligned_cols=62  Identities=6%  Similarity=-0.010  Sum_probs=40.3

Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      +.+....+....++.+.+.+-...+.   +. ..+++..++.||+++++|.-..+|.+.+....-.
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            34444555555555666444332211   22 2368999999999999999998999988875443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.41  E-value=0.00032  Score=37.17  Aligned_cols=30  Identities=17%  Similarity=0.457  Sum_probs=27.5

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEe
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYD   63 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd   63 (316)
                      |...|.++.|++.+ .++++++.|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            67789999999988 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.41  E-value=0.023  Score=48.16  Aligned_cols=249  Identities=12%  Similarity=0.045  Sum_probs=118.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCC-CCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD-TPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~-~~~~   80 (316)
                      .+...|+|+.+.+..++...            ...+....|+|+| +.++.. .++.|.+++..+++....-... ..+.
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~------------~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~   87 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP------------PPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIY   87 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E------------ETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTSEEEESES--TTTEE
T ss_pred             ceeEEEEecCCCceEECcCC------------ccccccceeecCC-CeeEEE-ecCceEEEECCCCCeEEeccccceeEE
Confidence            35678888887654433322            2367899999998 676665 4588999998776533221111 0110


Q ss_pred             ecccccccCCC-cccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCC-------------------CCccCCcccccc
Q 021160           81 TFCPRHLIGKN-NIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGP-------------------SPLSLSPEDLQK  138 (316)
Q Consensus        81 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~-------------------~~~~~~~~~~~~  138 (316)
                      .-.+..+.... -+.-..+-|+|+++.|+..  .+..|..+.+......                   ....+-+.++.+
T Consensus        88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~  167 (353)
T PF00930_consen   88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS  167 (353)
T ss_dssp             ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred             cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence            00000000000 1123468899999977773  5666555544322110                   001111122333


Q ss_pred             CCCcceeeCC----cCCceeeeEEEecCCCcEEEEec--c---CCeEEEEeccCCeeEEEeec-Cccc---eEEEEEc-C
Q 021160          139 REEPQVYSGH----RNSQTVKGVNFFGPNDEYVMSGS--D---CGHLFIWKKKGGKLVRLMVG-DRHV---VNQLEPH-P  204 (316)
Q Consensus       139 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~--~---dg~v~~wd~~~~~~~~~~~~-~~~~---v~~~~~~-p  204 (316)
                      .+.. .+...    .....+..+.| .+++..++..-  .   .-.+.++|..+++....+.. ....   -....|. +
T Consensus       168 ~~~~-~~~~~~~~~~~~~yl~~v~W-~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~  245 (353)
T PF00930_consen  168 GKTT-ELDPPNSLNPQDYYLTRVGW-SPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP  245 (353)
T ss_dssp             TCCC-EE---HHHHTSSEEEEEEEE-EETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred             CcEE-EeeeccccCCCccCccccee-cCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence            3221 11111    12234788888 77877333322  2   22466778877654333322 1222   2345554 6


Q ss_pred             CCCe-EEEEeCCCc--EEEecCCCCCCCCCCCCcccceeeeecCCC-CceeEEecCC--CeEEEEEec
Q 021160          205 HIPM-FATCGIEKT--VKLWAPMPTDFPPLPDNAEKIMKANKQGRE-DHSRITLTPD--VIMHVLRLQ  266 (316)
Q Consensus       205 ~~~~-l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d--~~~~~w~~~  266 (316)
                      ++.. +.....||.  |.+++..++....+....-.+.....+..+ +.+.+++..+  ..-++|.+.
T Consensus       246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  246 DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            6655 444446775  555566666555555444455555556664 4444555553  233444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.40  E-value=0.026  Score=50.34  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=61.3

Q ss_pred             CCeEEEEeccC-----CeeEEEeecCccceEEEEEcCCCCeEEE-EeCCCcEEEecCCCCCC-------------CCCCC
Q 021160          173 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMPTDF-------------PPLPD  233 (316)
Q Consensus       173 dg~v~~wd~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~iwd~~~~~~-------------~~~~~  233 (316)
                      ++.|.+.|..+     .+.+..+... .....+.++|||++++. +..+.++.|.|++..+.             .+..-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            45688888877     3455555433 35678999999999554 45689999999987441             11111


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ...++ ... +..++....|.--|..+-.|++..
T Consensus       374 GlGPL-HTa-FDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPL-HTA-FDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcc-eEE-ECCCCCEEEeEeecceeEEEehHH
Confidence            11221 222 455677888888899999999876

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.32  E-value=0.046  Score=49.43  Aligned_cols=148  Identities=7%  Similarity=0.040  Sum_probs=80.5

Q ss_pred             cceEEEEECCCCCcEEEEEe------cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           35 IRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~------~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      ..+.+.+++|++ ..++...      .|..-.||-...+.              ....+..+  ...+.-.|+|+|..+.
T Consensus       350 ~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~gg--------------~~~~lt~g--~~~t~PsWspDG~~lw  412 (591)
T PRK13616        350 GNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPLGG--------------VAVQVLEG--HSLTRPSWSLDADAVW  412 (591)
T ss_pred             cCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeCCC--------------cceeeecC--CCCCCceECCCCCceE
Confidence            467889999999 5554443      24444455433222              01111122  1367789999987555


Q ss_pred             EecCC-------------cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe
Q 021160          109 SYNDE-------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  175 (316)
Q Consensus       109 s~~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  175 (316)
                      +..|+             .+.+.+++.+                ...+   ....  .|..+.| +|||..++... ++.
T Consensus       413 ~v~dg~~~~~v~~~~~~gql~~~~vd~g----------------e~~~---~~~g--~Issl~w-SpDG~RiA~i~-~g~  469 (591)
T PRK13616        413 VVVDGNTVVRVIRDPATGQLARTPVDAS----------------AVAS---RVPG--PISELQL-SRDGVRAAMII-GGK  469 (591)
T ss_pred             EEecCcceEEEeccCCCceEEEEeccCc----------------hhhh---ccCC--CcCeEEE-CCCCCEEEEEE-CCE
Confidence            53322             2333333332                1211   1222  3999999 99999988776 477


Q ss_pred             EEE---EeccCCee-E---EEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          176 LFI---WKKKGGKL-V---RLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       176 v~~---wd~~~~~~-~---~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      |++   -....|.. +   ..+. +-...+.++.|.+++.++ .+..++...+|.+
T Consensus       470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            776   44444541 1   1122 222346889999998854 4444444445543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.0016  Score=56.73  Aligned_cols=93  Identities=10%  Similarity=0.125  Sum_probs=72.7

Q ss_pred             cccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee-eEEEecCCCcEEEE
Q 021160           92 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS  169 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~  169 (316)
                      ...+..+.|+|.-.++|.. .+|.|.+..+.-                 ..+.++.-+...  ++ +++| .|||++|+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV   79 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV   79 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc-----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence            4568889999999888885 789899988863                 355566544433  55 9999 999999999


Q ss_pred             eccCCeEEEEeccCCeeEEEee-cCccceEEEEEcC
Q 021160          170 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP  204 (316)
Q Consensus       170 ~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p  204 (316)
                      |-.||+|++.|..++..+..+. .....|.++-|.|
T Consensus        80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999999988776632 2345778888864

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.29  E-value=0.037  Score=44.02  Aligned_cols=184  Identities=14%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             cccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160           92 NIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      ...+..++|+|+...|++ . ..+.|..++.+.                 +.++.+.-... .....+++ -.++.++++
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------------~vlr~i~l~g~-~D~EgI~y-~g~~~~vl~   81 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------------KVLRRIPLDGF-GDYEGITY-LGNGRYVLS   81 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------------EEEEEE-SS--SSEEEEEE--STTEEEEE
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------------CEEEEEeCCCC-CCceeEEE-ECCCEEEEE
Confidence            445999999998764444 4 577888888753                 35555543221 23788888 677777776


Q ss_pred             eccCCeEEEEeccCCe------eEEEee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC--CC--CC-----
Q 021160          170 GSDCGHLFIWKKKGGK------LVRLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--TD--FP-----  229 (316)
Q Consensus       170 ~~~dg~v~~wd~~~~~------~~~~~~-----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~--~~--~~-----  229 (316)
                      --.++.+.++++....      ....+.     .+...+-.++|.|.++.|+.+-+..-..+|.+..  ..  +.     
T Consensus        82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~  161 (248)
T PF06977_consen   82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ  161 (248)
T ss_dssp             ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred             EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence            6668999999984321      112221     2345688999999988877777776677777654  11  10     


Q ss_pred             CC---CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEee----------cccccccccCCCCeEEEEe
Q 021160          230 PL---PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERR----------YNAADFESDEEEGETYLLG  296 (316)
Q Consensus       230 ~~---~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~  296 (316)
                      .+   ......+..+...+..+++++-...+..+..+| ..++........          ++..-++.+ ++|++|++.
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvs  239 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVS  239 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEE
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEc
Confidence            00   001112222332233566666666677777776 333332222111          233334333 467888875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0025  Score=58.96  Aligned_cols=100  Identities=18%  Similarity=0.236  Sum_probs=71.1

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  126 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  126 (316)
                      ..++.|+..|.+...|....=              ++..--.....+|++++|+.+|.+++.| .+|.|.+||...+   
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence            578899999999998886431              2111113346799999999999988887 7999999999987   


Q ss_pred             CCccCCccccccCCCcceeeCCcCCc-eeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160          127 SPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGSDCGHLFIWK  180 (316)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~v~~wd  180 (316)
                                   +..+.+..+..+. .+..+.+ ..++..++++...|.  +|.
T Consensus       163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEE
Confidence                         6777776555431 2444555 455667888777776  455

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0054  Score=52.54  Aligned_cols=142  Identities=11%  Similarity=0.157  Sum_probs=89.9

Q ss_pred             EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--------eEEEecCCcEEEEEc
Q 021160           49 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFEK  120 (316)
Q Consensus        49 ~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~s~~d~~i~iwd~  120 (316)
                      ++..+.....++-.|++.|+++.+.               .-+. .|.-+.+.|+.+        -|++-++..|+-||.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEW---------------k~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEW---------------KFED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEe---------------eccC-CcceeeccCCcchhcccccccEEeecCCceEEecc
Confidence            4555667788888999998854221               1122 266666777653        234446889999998


Q ss_pred             CCCCCCCCccCCccccccCCCcceeeCCcC--CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceE
Q 021160          121 NMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN  198 (316)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~  198 (316)
                      +-...              ..+....+|.-  .....|.+-  ....+|++|+.+|.|++||--.-+....+++-..+|.
T Consensus       412 Rv~~~--------------~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  412 RVQGK--------------NKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             cccCc--------------ceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence            75410              01111222221  111455553  4556899999999999999743333445677788999


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          199 QLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       199 ~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      .+..+.+|++|+..+ +..+.+-++
T Consensus       476 hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  476 HVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eEEeeccCcEEEEec-ccEEEEEEE
Confidence            999999999976555 556666654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.00094  Score=60.16  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             EEEEccCCCeEEEe-----cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160           97 GLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        97 ~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      -..|+|...+++.+     ..|.|.||-- ++                .+.+... .+  -.+++++| +|..-.|+.|=
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tG----------------EPqr~Vt-~P--~hatSLCW-Hpe~~vLa~gw   78 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TG----------------EPQRDVT-YP--VHATSLCW-HPEEFVLAQGW   78 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEec-CC----------------CCCcccc-cc--eehhhhcc-ChHHHHHhhcc
Confidence            35688887765542     2788888843 33                2222222 11  12678999 88888889999


Q ss_pred             cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      .-|.+.+|...+.+.-.....|+.+|.-+.|||+|..++++..-|.+.+|...
T Consensus        79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99999999998777666666799999999999999999999999999999765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.12  Score=44.45  Aligned_cols=177  Identities=11%  Similarity=0.086  Sum_probs=113.5

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe--cCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|.+.|+.+.+.........            ....++++|++....++-.  .++.+.+.|..+.+..          
T Consensus        96 ~~v~vid~~~~~~~~~~~vG~------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~----------  153 (381)
T COG3391          96 NTVSVIDTATNTVLGSIPVGL------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT----------  153 (381)
T ss_pred             CeEEEEcCcccceeeEeeecc------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE----------
Confidence            456777765555444443321            3468999999844444444  3788999998887732          


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE--ecCCcEEEEEcCCCCCCCCccCCccccccCCCcc-----eeeCCcCCce
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHRNSQT  153 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  153 (316)
                          .....+ ..+ ..+++.|+|+.+..  ..++.|.+.|....                ...+     .+....   .
T Consensus       154 ----~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~----------------~v~~~~~~~~~~~~~---~  208 (381)
T COG3391         154 ----ATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN----------------SVVRGSVGSLVGVGT---G  208 (381)
T ss_pred             ----EEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc----------------ceeccccccccccCC---C
Confidence                112122 123 78999999984444  35999999997654                1221     111111   1


Q ss_pred             eeeEEEecCCCcEEEEeccC---CeEEEEeccCCeeEEE-eecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD  227 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~d---g~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~~~  227 (316)
                      ...+.+ ++++.++......   +.+...|..++..... +..-......+..+|+++.+... +..+.+.+-|.....
T Consensus       209 P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         209 PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            456777 8999977666544   5899999998887665 22222145678999999987666 344788888887765

>PHA02713 hypothetical protein; Provisional

Probab=97.17  E-value=0.026  Score=50.96  Aligned_cols=91  Identities=2%  Similarity=0.043  Sum_probs=46.1

Q ss_pred             eEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEecCCC-CCCCCCCCCcccceeeeecC
Q 021160          175 HLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQG  245 (316)
Q Consensus       175 ~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~  245 (316)
                      .+..||+.+.+-.  ..+....... +++ .-++++.+.|+.+      ..+..||+.+ .+...+..-..+........
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            4777887765432  2222111111 122 2256776777654      2467899998 56333322222222222223


Q ss_pred             CCCceeEEecCCC--eEEEEEecc
Q 021160          246 REDHSRITLTPDV--IMHVLRLQR  267 (316)
Q Consensus       246 ~~~~~~~s~~~d~--~~~~w~~~~  267 (316)
                      .++.+.+.|+.++  .+..+|..+
T Consensus       511 ~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ECCEEEEEeeecceeehhhcCccc
Confidence            3677888888777  444555443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.14  E-value=0.037  Score=37.47  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=64.9

Q ss_pred             eeeEEEecCCC---cEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160          154 VKGVNFFGPND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       154 i~~~~~~~~~~---~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~  230 (316)
                      |+++++..-++   ..|++|++|..|++|+-.  +.+..+.. .+.|++++-... ..|+.+-.+|+|-+|+-.....+ 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR-   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR-   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence            55666543333   579999999999999754  56666654 357888877665 56888889999999976443322 


Q ss_pred             CCCCcccceeeeecCCC---CceeEEecCCCeEE
Q 021160          231 LPDNAEKIMKANKQGRE---DHSRITLTPDVIMH  261 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~---~~~~~s~~~d~~~~  261 (316)
                      ...... +..+.....+   -.-++++-++|.+-
T Consensus        77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            221222 3344434332   23577777777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.10  E-value=0.016  Score=50.31  Aligned_cols=182  Identities=13%  Similarity=0.088  Sum_probs=88.7

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEE-eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      +.-..++|.+.+  .+|+-...+.|.++ ++....          ...+.     .  ...+..+ |.  |.+|....++
T Consensus        69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~----------~k~i~-----~--~~~~~~I-f~--G~LL~~~~~~  126 (443)
T PF04053_consen   69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV----------VKSIK-----L--PFSVEKI-FG--GNLLGVKSSD  126 (443)
T ss_dssp             EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T----------T------------SS-EEEE-E---SSSEEEEETT
T ss_pred             CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc----------ceEEc-----C--CcccceE-Ec--CcEEEEECCC
Confidence            445677888854  57777778889996 443221          00111     1  1123333 22  8877777677


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---------
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---------  184 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~---------  184 (316)
                      .|.+||+.++                +.++.+....    |..+.| ++++.+++..+.+ .+.+++....         
T Consensus       127 ~i~~yDw~~~----------------~~i~~i~v~~----vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g  184 (443)
T PF04053_consen  127 FICFYDWETG----------------KLIRRIDVSA----VKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEG  184 (443)
T ss_dssp             EEEEE-TTT------------------EEEEESS-E-----EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred             CEEEEEhhHc----------------ceeeEEecCC----CcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccC
Confidence            9999999988                6666666432    788988 9999999988865 5666664422         


Q ss_pred             --eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160          185 --KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       185 --~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                        .....+..-...|.+.+|..+  .|+-.... .++.  +-.+....+. |.+..+.+....+..+.+.....++.+..
T Consensus       185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~  258 (443)
T PF04053_consen  185 VEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA-HLDKPLYLLGYLPKENRLYLIDRDGNVIS  258 (443)
T ss_dssp             -GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE-E-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred             chhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE-EcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence              023333322467888999766  54444433 6665  3333322221 11222333333444456666677777766


Q ss_pred             EEec
Q 021160          263 LRLQ  266 (316)
Q Consensus       263 w~~~  266 (316)
                      +.+.
T Consensus       259 ~~ld  262 (443)
T PF04053_consen  259 YELD  262 (443)
T ss_dssp             EE--
T ss_pred             EEEC
Confidence            6554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.06  E-value=0.13  Score=44.20  Aligned_cols=172  Identities=13%  Similarity=0.063  Sum_probs=87.4

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccc--ccCCCcccEEEEEEcc-----CCC
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH--LIGKNNIHITGLAYSN-----TSE  105 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-----~~~  105 (316)
                      ..++|++++.+.-|  ++|+|..+|.+.|.|++...++...         ....  ........++++.|..     |+.
T Consensus        85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~---------~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE---------NIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE---------EGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec---------cccccccccccccCeeEEEEEEEecCCCcc
Confidence            36899999998776  8999999999999999876643210         1111  2123455678888863     332


Q ss_pred             ----eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-------------------
Q 021160          106 ----LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-------------------  162 (316)
Q Consensus       106 ----~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------  162 (316)
                          ++++.+.|.+.+|.+.-...   ..+..      ........+...  +..+...+.                   
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~---g~f~v------~~~~~~~~~~~~--i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSN---GRFSV------QFAGATTNHDSP--ILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GG---G-EEE------EEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             cceEEEEEeCCCCEEEEEEecCCC---CceEE------EEeeccccCCCc--eEEEEEEECCCCCcccCchhHhhccccC
Confidence                44445789999998752100   00000      000011112211  333322111                   


Q ss_pred             --CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc-----CCCCeEEEEeCCCcEEEecCCCCC
Q 021160          163 --NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       163 --~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                        ...++++++ +..++++...+.+..+......-....+.+-     ..+..|++-..+|.|+++.+..-+
T Consensus       223 ~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  223 ISIPGYVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             ----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             CCcCcEEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence              122444444 6789999988877665544322233334442     245568888899999999988755

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.06  E-value=0.0024  Score=36.00  Aligned_cols=34  Identities=12%  Similarity=0.022  Sum_probs=29.8

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ...|..++|+|...+||.+..+|.|.++.+...+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            3578999999999999999999999999985543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.04  E-value=0.12  Score=43.19  Aligned_cols=176  Identities=16%  Similarity=0.195  Sum_probs=93.5

Q ss_pred             eeeEEEEeeCC-C-cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCc-ccCCCCCCCCc
Q 021160            3 LFNMLFDLRSD-S-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPV   79 (316)
Q Consensus         3 g~v~vwd~~~~-~-~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~-~~~~~~~~~~~   79 (316)
                      |.|.++++... . ..++...+...       .+++|++++-- .+ . ++++. ...|.+|++...+ +.         
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~---------  121 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLL---------  121 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEE---------
T ss_pred             cEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccch---------
Confidence            88999999874 1 11111111111       46789999877 34 4 44443 4889999998765 21         


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                          .... ......+.++...  +.+++.+ .-..+.++..+...               ..+..+........++++.
T Consensus       122 ----~~~~-~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~---------------~~l~~va~d~~~~~v~~~~  179 (321)
T PF03178_consen  122 ----KKAF-YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN---------------NKLILVARDYQPRWVTAAE  179 (321)
T ss_dssp             ----EEEE-E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT---------------E-EEEEEEESS-BEEEEEE
T ss_pred             ----hhhe-ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC---------------CEEEEEEecCCCccEEEEE
Confidence                1111 1112256666554  4455554 46666666544320               1233333333334588888


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccC-------C--eeEEEeecC-ccceEEE---EEcCC--C------CeEEEEeCCCc
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKG-------G--KLVRLMVGD-RHVVNQL---EPHPH--I------PMFATCGIEKT  217 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~-------~--~~~~~~~~~-~~~v~~~---~~~p~--~------~~l~s~~~d~~  217 (316)
                      | -++++.++.+..+|.+.++....       +  ++.....-| ...|+++   ++.|.  +      +.++.++.+|.
T Consensus       180 ~-l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~  258 (321)
T PF03178_consen  180 F-LVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS  258 (321)
T ss_dssp             E-E-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-
T ss_pred             E-ecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE
Confidence            8 44556899999999999998762       2  222222222 2456766   55552  2      13777888998


Q ss_pred             EEEe
Q 021160          218 VKLW  221 (316)
Q Consensus       218 i~iw  221 (316)
                      |.+.
T Consensus       259 Ig~l  262 (321)
T PF03178_consen  259 IGVL  262 (321)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.16  Score=41.88  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=65.8

Q ss_pred             CCcccEEEEEEccCCCeEE-E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE
Q 021160           90 KNNIHITGLAYSNTSELLI-S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  167 (316)
Q Consensus        90 ~~~~~i~~~~~~~~~~~l~-s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  167 (316)
                      .+-..-+.|+|+|+++.|. + +..+.|+.|++.........          +....+... .....-.++. ..+|.+.
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~----------~~~~~~~~~-~~G~PDG~~v-DadG~lw  227 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG----------RRGFVDFDE-EPGLPDGMAV-DADGNLW  227 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC----------cceEEEccC-CCCCCCceEE-eCCCCEE
Confidence            3344556899999997444 4 35688888887631000000          111111111 1122445555 6778877


Q ss_pred             EEeccCC-eEEEEeccCCeeEEEeecCccceEEEEEc-CCCCe-EEEEe
Q 021160          168 MSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPM-FATCG  213 (316)
Q Consensus       168 ~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~-l~s~~  213 (316)
                      +++...| .|..|+.. |+++..+......+++++|- |+.+. ++|+.
T Consensus       228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         228 VAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            6555444 89999998 99998888776777888884 44455 34443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.92  E-value=0.011  Score=50.15  Aligned_cols=102  Identities=14%  Similarity=0.116  Sum_probs=63.4

Q ss_pred             cCCCcEEEEec---------cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160          161 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  231 (316)
Q Consensus       161 ~~~~~~l~~~~---------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~  231 (316)
                      |||+++++...         ..+.+.++|+.+++....... ...+....|+|+|+.+|-.. ++.|.+++..++....+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            46777766643         245789999998875544333 56788899999999988876 78999999876653222


Q ss_pred             CCCc--------------cc---ceeeeecCCCCceeEEecCC-CeEEEEE
Q 021160          232 PDNA--------------EK---IMKANKQGREDHSRITLTPD-VIMHVLR  264 (316)
Q Consensus       232 ~~~~--------------~~---~~~~~~~~~~~~~~~s~~~d-~~~~~w~  264 (316)
                      ....              ++   .....||+++++.++....| ..++.+.
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP  129 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence            2111              11   23456788888887765543 3334333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.13  Score=39.78  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             EEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160           96 TGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  173 (316)
Q Consensus        96 ~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  173 (316)
                      +.++|+.+.+ +... +.+-.|.-||.+-..+.....-.+.++.+.++   +. +.   ..-.++. ..+|.+.++.-..
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---~e-~~---~PDGm~I-D~eG~L~Va~~ng  232 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---FE-SL---EPDGMTI-DTEGNLYVATFNG  232 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC---cC-CC---CCCcceE-ccCCcEEEEEecC
Confidence            4688987776 4444 56888888885443333333322333322211   11 11   1234444 6688888888899


Q ss_pred             CeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160          174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP  204 (316)
Q Consensus       174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p  204 (316)
                      ++|...|+.+|+.+.++.-....|++++|--
T Consensus       233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            9999999999999999988889999999953

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.2  Score=41.37  Aligned_cols=118  Identities=7%  Similarity=0.068  Sum_probs=71.6

Q ss_pred             ccEEEEEEccCCCeEEEecC------------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           93 IHITGLAYSNTSELLISYND------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      ...+.+...|+|.+.++...            |.|+.+|. .+                ...+.+..+-..  .+.++| 
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g----------------~~~~l~~~~~~~--~NGla~-  170 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG----------------GVVRLLDDDLTI--PNGLAF-  170 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC----------------CEEEeecCcEEe--cCceEE-
Confidence            34567788899987777422            22333333 22                234444443322  678999 


Q ss_pred             cCCCcEEEEec-cCCeEEEEeccC--C----ee-EEEeecCccceEEEEEcCCCCeEEEEeCCC-cEEEecCCCCCCCC
Q 021160          161 GPNDEYVMSGS-DCGHLFIWKKKG--G----KL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDFPP  230 (316)
Q Consensus       161 ~~~~~~l~~~~-~dg~v~~wd~~~--~----~~-~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-~i~iwd~~~~~~~~  230 (316)
                      +|+++.++.+. ..+.|+-|++..  +    +. ...+....+..-.++...+|.+.+++...| .|.+|+.....+..
T Consensus       171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~  249 (307)
T COG3386         171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGE  249 (307)
T ss_pred             CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEE
Confidence            99997776664 458888887752  1    11 122223345666788888888875554444 89999998444433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.86  E-value=0.005  Score=34.71  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCc
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR   65 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~   65 (316)
                      ...|.+++|+|.. .++|.|+.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence            5579999999999 899999999999999994

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.75  E-value=0.16  Score=45.91  Aligned_cols=219  Identities=14%  Similarity=0.094  Sum_probs=107.7

Q ss_pred             cEEEEEecC------CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC------Cc
Q 021160           48 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND------EL  114 (316)
Q Consensus        48 ~~l~~g~~d------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d------~~  114 (316)
                      .+++.|+.+      ..+..||..++++......+              ....-.+++.. ++.+++. |.|      .+
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--------------~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~  350 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--------------SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSS  350 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--------------cccccccEEEE-CCEEEEEccccCCCcccce
Confidence            678888876      35788888877643221100              11222334443 3454444 556      34


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe-----EEEEeccCCee--E
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKL--V  187 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----v~~wd~~~~~~--~  187 (316)
                      +..||.....              +..+..+......  . .++  .-+|...++|+.||.     +-.||..+.+-  +
T Consensus       351 ve~YD~~~~~--------------W~~~a~M~~~R~~--~-~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  351 VERYDPRTNQ--------------WTPVAPMNTKRSD--F-GVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             EEEecCCCCc--------------eeccCCccCcccc--c-eeE--EECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            6777876651              1111122222211  2 222  236788888988874     66777765442  2


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCC------cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCe--
Q 021160          188 RLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI--  259 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~--  259 (316)
                      ..+.......-.+.  -++.+.+.||.++      ++..||+.+.+...++.-..+-.......-++.+.+.|+.|+.  
T Consensus       412 a~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  412 APMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA  489 (571)
T ss_pred             CCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCc
Confidence            22222122222222  2677778887554      5788999888744433222111111112235567777777752  


Q ss_pred             ---EEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          260 ---MHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       260 ---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                         +..+|..+.+=..................++.+|+++-.++..
T Consensus       490 ~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~  535 (571)
T KOG4441|consen  490 LSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN  535 (571)
T ss_pred             cceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence               4445544432111111222222222234455688887755543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.0053  Score=56.93  Aligned_cols=100  Identities=10%  Similarity=0.102  Sum_probs=70.0

Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      .+..++.|+..|.+...|+... +-  ..-..-.++|++++|+.+|..++.|-.+|.|.+||...++ ++.+..+..+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            4668999999999999988642 21  1112234799999999999999999999999999999876 555555554443


Q ss_pred             eeee--cCCCCceeEEecCCCeEEEEEe
Q 021160          240 KANK--QGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       240 ~~~~--~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ....  +..++..++++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            3222  2334446777777774  6654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.62  E-value=0.26  Score=44.67  Aligned_cols=207  Identities=11%  Similarity=0.087  Sum_probs=102.8

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC------CcEEEEeCcCCcccCCCCCCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d------g~v~~wd~~~~~~~~~~~~~~   77 (316)
                      .|..+|..++.........          ++..-.+++... + .++++|+.|      ..+..||..+.++.....   
T Consensus       302 ~ve~yd~~~~~w~~~a~m~----------~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~---  366 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMP----------SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP---  366 (571)
T ss_pred             eeEEecCCcCcEeecCCCC----------cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCC---
Confidence            4556666665433332222          122334555554 4 688999988      357778888777543210   


Q ss_pred             CceecccccccCCCcccEEEEEEccCCCeEEE-ecCCc-----EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDEL-----VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  151 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (316)
                             ... ..+...+..    -+|.+.+. |.||.     +-.||..+.                 ...........
T Consensus       367 -------M~~-~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~-----------------~W~~va~m~~~  417 (571)
T KOG4441|consen  367 -------MNT-KRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTN-----------------KWTPVAPMLTR  417 (571)
T ss_pred             -------ccC-ccccceeEE----ECCEEEEEeccccccccccEEEecCCCC-----------------cccccCCCCcc
Confidence                   000 111111111    24555555 45643     677777654                 11111111111


Q ss_pred             ceeeeEEEecCCCcEEEEeccCC------eEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCC-----cE
Q 021160          152 QTVKGVNFFGPNDEYVMSGSDCG------HLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TV  218 (316)
Q Consensus       152 ~~i~~~~~~~~~~~~l~~~~~dg------~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-----~i  218 (316)
                      ..-..++  .-+|.+.++|+.++      .+..||..+.+-  +..+........ ++. -++.+.+.||.|+     +|
T Consensus       418 r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  418 RSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSV  493 (571)
T ss_pred             eeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceE
Confidence            1111222  33677778887544      577888876643  233322222222 222 2567788888776     37


Q ss_pred             EEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          219 KLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       219 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      ..||+.+.+...+..-..+.........++...+.++.|+
T Consensus       494 E~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  494 ERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             EEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence            8899988874443221111111111223556777777664

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.61  E-value=0.41  Score=41.51  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=27.0

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160           93 IHITGLAYSNTSELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  123 (316)
                      +.+.++.|+.+.++++...||.+++||+...
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            7899999999877888889999999998644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.023  Score=48.86  Aligned_cols=71  Identities=11%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  114 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  114 (316)
                      ....|.+-..+|  ++++|+.+|.||+||- .+.              ..++.+.+-..+|..+..+.+|+++++..+..
T Consensus       431 ~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty  493 (644)
T KOG2395|consen  431 NNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTY  493 (644)
T ss_pred             cccceeeecCCc--eEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence            345677766665  8999999999999997 554              45566677889999999999999888888888


Q ss_pred             EEEEEcCC
Q 021160          115 VYLFEKNM  122 (316)
Q Consensus       115 i~iwd~~~  122 (316)
                      +.+.++.-
T Consensus       494 LlLi~t~~  501 (644)
T KOG2395|consen  494 LLLIDTLI  501 (644)
T ss_pred             EEEEEEec
Confidence            88888754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.56  E-value=0.52  Score=42.03  Aligned_cols=194  Identities=11%  Similarity=0.099  Sum_probs=102.5

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccE--EEEEEccCCCeEEEecCCcEEEEEcCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG  125 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~  125 (316)
                      ..++.++.++.|.-.|..+++.........+..         .....+  ..+.....+.+++...++.|+-+|.+++  
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~---------~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG--  130 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD---------RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG--  130 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc---------ccccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence            356677788999999999987543321111100         000000  0112221255666667999999999888  


Q ss_pred             CCCccCCccccccCCCcceeeCCcCC--c-ee-eeEEEecCCCcEEEEec---------cCCeEEEEeccCCeeEEEeec
Q 021160          126 PSPLSLSPEDLQKREEPQVYSGHRNS--Q-TV-KGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i-~~~~~~~~~~~~l~~~~---------~dg~v~~wd~~~~~~~~~~~~  192 (316)
                                    +.+-.+......  . .+ .+..+ .  +..++.++         .++.+.-+|..+|+.+-.+..
T Consensus       131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence                          444443322110  0 01 11122 1  23444543         367899999999998776643


Q ss_pred             Ccc--------------------ce-EEEEEcCCCCeEEEEeCCC------------------cEEEecCCCCCC---CC
Q 021160          193 DRH--------------------VV-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDF---PP  230 (316)
Q Consensus       193 ~~~--------------------~v-~~~~~~p~~~~l~s~~~d~------------------~i~iwd~~~~~~---~~  230 (316)
                      ...                    .+ ...++.+.+..++.++.++                  .|.-.|..+++.   ..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence            211                    01 1234455555666665454                  688888887761   11


Q ss_pred             CCCCc--------ccceeeeecCCCC---ceeEEecCCCeEEEEEecccCc
Q 021160          231 LPDNA--------EKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       231 ~~~~~--------~~~~~~~~~~~~~---~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ...+.        .+++... ...++   ..++.++.+|.+..+|..+++.
T Consensus       274 ~~~~~~~~~~~~s~p~~~~~-~~~~g~~~~~V~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         274 TTPHDLWDYDGPNQPSLADI-KPKDGKPVPAIVHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             CCCCCCcccccCCCCeEEec-cccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence            11111        1111110 01122   2567788899999999888744

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.50  E-value=0.35  Score=39.35  Aligned_cols=159  Identities=16%  Similarity=0.093  Sum_probs=88.4

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      +.|+.|+.+| +.+++.....              ....+  .+...|..+...++-+.++.-.|+.++++++.......
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~--------------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPS--------------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS   70 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCc--------------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence            7888998888 8999983221              11111  12234999999998887777678999999997652111


Q ss_pred             CccCCccccccCCCcceeeCCcCCceeeeEE-EecCCCcEEEEeccCCeEEEEeccCC-----eeEEEeecCccceEEEE
Q 021160          128 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQLE  201 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~  201 (316)
                      ... .....+.......+. ..  +.+..++ -....+...++......|.+|.....     +....+.. ...+.+++
T Consensus        71 ~~~-~~~~~~~~~~~~~~~-~~--~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~  145 (275)
T PF00780_consen   71 TSA-PLAFPKSRSLPTKLP-ET--KGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIA  145 (275)
T ss_pred             ccc-ccccccccccccccc-cc--CCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEE
Confidence            000 000000000000111 11  1133333 11234444445555668998887653     34455543 36788999


Q ss_pred             EcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160          202 PHPHIPMFATCGIEKTVKLWAPMPTDFPPL  231 (316)
Q Consensus       202 ~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~  231 (316)
                      |.  ++.++.|. .....+.|+.++....+
T Consensus       146 ~~--~~~i~v~~-~~~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  146 FL--GNKICVGT-SKGFYLIDLNTGSPSEL  172 (275)
T ss_pred             Ee--CCEEEEEe-CCceEEEecCCCCceEE
Confidence            98  44666665 44578889886654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.47  E-value=0.4  Score=39.69  Aligned_cols=159  Identities=10%  Similarity=0.076  Sum_probs=87.0

Q ss_pred             CCCCCcEEEEEecCCcEEEEeCc-CCcccCCCCCCCCceecccccccCCCcccE-EEEEEccCC-CeEEEecCCcEEEEE
Q 021160           43 DPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSNTS-ELLISYNDELVYLFE  119 (316)
Q Consensus        43 ~~~~~~~l~~g~~dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~-~~l~s~~d~~i~iwd  119 (316)
                      -|.++.-|.+-+.||.+.-..+. .++..         .  ....+.....+++ ..-++...+ .++..+.+|.|+-.|
T Consensus       143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---------~--~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d  211 (342)
T PF06433_consen  143 YPSGNRGFSMLCGDGSLLTVTLDADGKEA---------Q--KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD  211 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEEETSTSSEE---------E--EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred             EecCCCceEEEecCCceEEEEECCCCCEe---------E--eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence            35444668888899999999887 34421         0  0111112222222 233444443 465567788888888


Q ss_pred             cCCCCCCCCccCCccccccCCCcceeeCCc------C--CceeeeEEEecCCCcEEEEec--cCC-------eEEEEecc
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHR------N--SQTVKGVNFFGPNDEYVMSGS--DCG-------HLFIWKKK  182 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~i~~~~~~~~~~~~l~~~~--~dg-------~v~~wd~~  182 (316)
                      +.....              +....+.-..      .  +....-++++.+.+.+.+.-.  .++       .|.++|+.
T Consensus       212 lsg~~~--------------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  212 LSGDSA--------------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             ETTSSE--------------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             ccCCcc--------------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence            866410              0111111000      0  001233556333344333221  111       48999999


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCC-eEEEE-eCCCcEEEecCCCCC
Q 021160          183 GGKLVRLMVGDRHVVNQLEPHPHIP-MFATC-GIEKTVKLWAPMPTD  227 (316)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~-~~d~~i~iwd~~~~~  227 (316)
                      +++.+.++.. ...+.+|+.+.+.+ .|.+. ..++.+.+||..+++
T Consensus       278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            9999999874 24677899998765 55544 467899999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.30  E-value=0.63  Score=40.15  Aligned_cols=162  Identities=14%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc---C--CCeEEEecCCcEEE
Q 021160           43 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---T--SELLISYNDELVYL  117 (316)
Q Consensus        43 ~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~--~~~l~s~~d~~i~i  117 (316)
                      ++++...|++|+..|.++||+.......       +-..+..    ..-..+|..++.-+   .  ...||.---..+.+
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~-------~~~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v  101 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQ-------PEDLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV  101 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCC-------CccEEEE----EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence            4555579999999999999999654311       1111111    12245777776543   1  23555556788888


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE---ecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                      |.+....+..... ..      ..+..+..|.-......+++   -... ..+|..-+.||.+.+|+-+.-.....++. 
T Consensus       102 Y~v~~~~g~~~~g-~~------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-  173 (418)
T PF14727_consen  102 YSVSLVDGTVEHG-NQ------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-  173 (418)
T ss_pred             EEEEecCCCcccC-cE------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence            8884331110000 00      11122222332222334433   1112 46788889999999999875554444443 


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      ---.-.+++.|....|++++.+..+.-|..
T Consensus       174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  174 FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            222334778888888999988888888864

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.30  E-value=0.17  Score=45.84  Aligned_cols=146  Identities=14%  Similarity=0.028  Sum_probs=78.2

Q ss_pred             ccEEEEEEccCCCeEEEec-------CC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC
Q 021160           93 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  163 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (316)
                      ..+...+++|+|+.++...       |.  .|.+++....                 ......+.    ....-.| +|+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----------------~~~lt~g~----~~t~PsW-spD  407 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----------------AVQVLEGH----SLTRPSW-SLD  407 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----------------ceeeecCC----CCCCceE-CCC
Confidence            4678899999998665522       43  3444454221                 22222222    2667777 899


Q ss_pred             CcEEEEeccC------------CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE---ecCCCCC-
Q 021160          164 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL---WAPMPTD-  227 (316)
Q Consensus       164 ~~~l~~~~~d------------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i---wd~~~~~-  227 (316)
                      |..+++....            +.+.+.++..++...   ...+.|..+.|||||..++... ++.|.+   -....+. 
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~  483 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY  483 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce
Confidence            8877776543            222222333332221   2245799999999999877665 577776   3333333 


Q ss_pred             -C---CCCCCCc-ccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          228 -F---PPLPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       228 -~---~~~~~~~-~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                       +   ..+.... ..+.... |..++.+++ +..++.-.+|.+.
T Consensus       484 ~l~~~~~l~~~l~~~~~~l~-W~~~~~L~V-~~~~~~~~v~~v~  525 (591)
T PRK13616        484 ALTNPREVGPGLGDTAVSLD-WRTGDSLVV-GRSDPEHPVWYVN  525 (591)
T ss_pred             eecccEEeecccCCccccce-EecCCEEEE-EecCCCCceEEEe
Confidence             1   1122112 2233444 666666543 3444444456544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.17  E-value=0.0092  Score=45.64  Aligned_cols=105  Identities=8%  Similarity=0.060  Sum_probs=58.8

Q ss_pred             CCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEE-EEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC-CCc-cc
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQL-EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNA-EK  237 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~-~~  237 (316)
                      ..+..+++|+.+|.|++|.... +........-...|.++ .--.++.+..+++.|+.||.|++...+..-.. .|. .+
T Consensus        68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence            3467899999999999998762 22111111122233332 22234457788899999999999877633222 233 12


Q ss_pred             ceeeeecCCCCceeEEe--cCCCeEEEEEecc
Q 021160          238 IMKANKQGREDHSRITL--TPDVIMHVLRLQR  267 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~--~~d~~~~~w~~~~  267 (316)
                      ..... ....++.+...  |.|..++.|++..
T Consensus       148 ~e~~i-vv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  148 GEELI-VVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cceeE-EecCCceEEeeccccchhhhhcchhh
Confidence            21122 22233344444  5666666776653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.09  E-value=0.56  Score=37.61  Aligned_cols=205  Identities=14%  Similarity=0.110  Sum_probs=116.4

Q ss_pred             ceEEEEECCCCCcEEEEEecCCc-EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c--
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N--  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~--  111 (316)
                      .-..++|+|..+.-++.+-.-|+ ..++|....+....+      ....-++. -+      .=.|+|+|.+|..+ +  
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~------~s~~~RHf-yG------HGvfs~dG~~LYATEndf  135 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL------VSQEGRHF-YG------HGVFSPDGRLLYATENDF  135 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE------ecccCcee-ec------ccccCCCCcEEEeecCCC
Confidence            34567888877666666665555 456887766521110      00011111 12      23589999977764 3  


Q ss_pred             ---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----------------
Q 021160          112 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------------  172 (316)
Q Consensus       112 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------------  172 (316)
                         -|.|-+||.+.+.               ..+-.+..|.-.  ...+.+ .+||+.++.+..                
T Consensus       136 d~~rGViGvYd~r~~f---------------qrvgE~~t~GiG--pHev~l-m~DGrtlvvanGGIethpdfgR~~lNld  197 (366)
T COG3490         136 DPNRGVIGVYDAREGF---------------QRVGEFSTHGIG--PHEVTL-MADGRTLVVANGGIETHPDFGRTELNLD  197 (366)
T ss_pred             CCCCceEEEEeccccc---------------ceecccccCCcC--cceeEE-ecCCcEEEEeCCceecccccCccccchh
Confidence               3568999998663               455667777654  677888 899999887643                


Q ss_pred             --CCeEEEEeccCCeeEEE--ee--cCccceEEEEEcCCCCeEEEEeCCCcE-----EEecCCCCC-CCCCCCC------
Q 021160          173 --CGHLFIWKKKGGKLVRL--MV--GDRHVVNQLEPHPHIPMFATCGIEKTV-----KLWAPMPTD-FPPLPDN------  234 (316)
Q Consensus       173 --dg~v~~wd~~~~~~~~~--~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i-----~iwd~~~~~-~~~~~~~------  234 (316)
                        .-.+.+.|..+|+++..  ++  .+.-.|..++.-+++..++.+-..|--     -+=-...++ +..+.-.      
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~  277 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA  277 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence              11244555556665543  22  344567888888888776655433311     010111122 2222211      


Q ss_pred             -cccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          235 -AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                       ...+-.++....++...++....+..-+||..++...
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence             1222233433345556677777888999999887543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.01  E-value=0.35  Score=39.79  Aligned_cols=155  Identities=15%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      .+.+..+.-++++ .+++++..-..+.-||.-...+             .+..  ......|..+.|.|++.+.+.+..+
T Consensus       144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg  207 (302)
T PF14870_consen  144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGG  207 (302)
T ss_dssp             ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTT
T ss_pred             cceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCc
Confidence            4568888889998 7888876655555677543221             1111  2235789999999999877777888


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec-
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-  192 (316)
                      .|+.=+....            ..+... .........-.+.+++| .+++...++|+ .|.+ +.....|+.-...+. 
T Consensus       208 ~~~~s~~~~~------------~~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~  271 (302)
T PF14870_consen  208 QIQFSDDPDD------------GETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG  271 (302)
T ss_dssp             EEEEEE-TTE------------EEEE----B-TTSS--S-EEEEEE-SSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG
T ss_pred             EEEEccCCCC------------cccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeC-CccE-EEeCCCCccceECccc
Confidence            8887762111            000000 00111111122889999 77777777665 4444 455566665444432 


Q ss_pred             --CccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          193 --DRHVVNQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       193 --~~~~v~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                        -......+.|.+..+-++.| .+|.|--|
T Consensus       272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence              23457788887665556665 47876544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.88  E-value=0.5  Score=40.35  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=37.9

Q ss_pred             eeeEEEecCCCcEEEEecc-------------------CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021160          154 VKGVNFFGPNDEYVMSGSD-------------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI  214 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~-------------------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~  214 (316)
                      ...+.| .|+|.+.++-+.                   .|.|.-++..+++......++ .....++|+|+++++++-..
T Consensus       126 ~~~l~~-gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       126 LNSLAW-GPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             ccCceE-CCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence            677888 899876665442                   145666666655533222333 34568999999988776553


Q ss_pred             C
Q 021160          215 E  215 (316)
Q Consensus       215 d  215 (316)
                      +
T Consensus       204 ~  204 (367)
T TIGR02604       204 D  204 (367)
T ss_pred             C
Confidence            3

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.88  E-value=0.41  Score=37.18  Aligned_cols=108  Identities=11%  Similarity=0.110  Sum_probs=66.5

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEe--CcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  114 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  114 (316)
                      +.++|+.+...+.++-+.+-.|.-||  ..++.+.+.    ..+..+..... ..+. .--.++...+|++.++. +.++
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr----~~i~dlrk~~~-~e~~-~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR----KVIFDLRKSQP-FESL-EPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCc----ceeEEeccCCC-cCCC-CCCcceEccCCcEEEEEecCcE
Confidence            57889877755666777888887788  666664321    11111111000 0110 11133445577766664 8999


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      |...|..++                +.+..+.-....  +++++|-.++-..+++
T Consensus       235 V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  235 VQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV  271 (310)
T ss_pred             EEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence            999999999                788888877765  9999994443344443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.84  E-value=0.51  Score=42.76  Aligned_cols=111  Identities=7%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             EEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE-ecCCCcEEEEecc
Q 021160           95 ITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD  172 (316)
Q Consensus        95 i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~  172 (316)
                      ..-+.-+.-++..+. .....+.|||.+.+.              ......|   .....|.++.| +.|+++.+++.+-
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--------------lE~~~~f---~~~~~I~dLDWtst~d~qsiLaVGf   94 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV--------------LEYEESF---SEDDPIRDLDWTSTPDGQSILAVGF   94 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcE--------------EEEeeee---cCCCceeeceeeecCCCCEEEEEEc
Confidence            334444445554444 356679999998761              0111122   12234899988 3678999999999


Q ss_pred             CCeEEEEecc---------CCeeEEEe--ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          173 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       173 dg~v~~wd~~---------~~~~~~~~--~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      ...|.++.-.         +-..+..+  ..|+ .+|.+..|.++|..++.++  +.+.|+|-.
T Consensus        95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            9999998742         11223333  3344 5789999999997765554  678888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.82  E-value=1.3  Score=39.54  Aligned_cols=67  Identities=12%  Similarity=0.068  Sum_probs=43.1

Q ss_pred             cCCCcEEEEeccCC------------------eEEEEeccCCeeEEEeec--Ccc----ceEEEEEc----CCCC---eE
Q 021160          161 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVG--DRH----VVNQLEPH----PHIP---MF  209 (316)
Q Consensus       161 ~~~~~~l~~~~~dg------------------~v~~wd~~~~~~~~~~~~--~~~----~v~~~~~~----p~~~---~l  209 (316)
                      .+.+..++.++.++                  .+.-+|..+|+..-.+..  |..    ......+.    -++.   .+
T Consensus       225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V  304 (488)
T cd00216         225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI  304 (488)
T ss_pred             eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence            44567777777665                  799999999998876642  210    00111111    1232   46


Q ss_pred             EEEeCCCcEEEecCCCCC
Q 021160          210 ATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       210 ~s~~~d~~i~iwd~~~~~  227 (316)
                      +.++.+|.+...|.++++
T Consensus       305 ~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         305 VHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             EEECCCceEEEEECCCCc
Confidence            777889999999998887

The alignment model contains an 8-bladed beta-propeller.

>PHA03098 kelch-like protein; Provisional

Probab=95.69  E-value=0.89  Score=41.09  Aligned_cols=67  Identities=12%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             CCcEEEEeccC------CeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC--------CcEEEecCCCC
Q 021160          163 NDEYVMSGSDC------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT  226 (316)
Q Consensus       163 ~~~~l~~~~~d------g~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d--------~~i~iwd~~~~  226 (316)
                      ++...+.|+.+      ..+..||+.+.+-..  .++..... .+++. .++.+++.|+.+        ..+.+||+.+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            46666777632      457889987654322  12111111 12222 255666666543        23888999887


Q ss_pred             CCCCC
Q 021160          227 DFPPL  231 (316)
Q Consensus       227 ~~~~~  231 (316)
                      +...+
T Consensus       467 ~W~~~  471 (534)
T PHA03098        467 KWTEL  471 (534)
T ss_pred             ceeeC
Confidence            74433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.67  E-value=0.93  Score=36.86  Aligned_cols=204  Identities=11%  Similarity=0.045  Sum_probs=103.5

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccc--ccccCCCcccEEEEE--EccCC-CeEEEe
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP--RHLIGKNNIHITGLA--YSNTS-ELLISY  110 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~--~~~~~-~~l~s~  110 (316)
                      .|..+...|.- +.+++- .|+.+.++++..-.......   +...-..  ..........+...+  -...+ ..|+.+
T Consensus        37 ~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va  111 (275)
T PF00780_consen   37 SITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSA---PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA  111 (275)
T ss_pred             eEEEEEEeccc-CEEEEE-cCCccEEEEchhhccccccc---cccccccccccccccccCCeeEEeeccccccceEEEEE
Confidence            58999999876 444443 35999999998654221100   0000000  000011122344444  11222 366667


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccC-CCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      ...+|.+|......            ... +..+.+.-.   ..+.+++| .  ++.++.|..+ ...+.|+.++.....
T Consensus       112 ~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~~-~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  112 VKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTSK-GFYLIDLNTGSPSEL  172 (275)
T ss_pred             ECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeCC-ceEEEecCCCCceEE
Confidence            77799999886631            000 122333322   33888998 3  6677777654 477899987765443


Q ss_pred             eecCc------------cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC--CCCCCcccceeeeecCCCCceeEEec
Q 021160          190 MVGDR------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       190 ~~~~~------------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      +....            .++..+.. +++.+|++-  |..-..-|..+...+  .+.-. ..+......   ..+++...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~-~~p~~~~~~---~pyli~~~  245 (275)
T PF00780_consen  173 LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWS-SAPQSVAYS---SPYLIAFS  245 (275)
T ss_pred             eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcC-CchhEEEEE---CCEEEEEC
Confidence            32111            12333333 344555443  333344454443322  11111 122233322   34888877


Q ss_pred             CCCeEEEEEecccCcc
Q 021160          256 PDVIMHVLRLQRRQTL  271 (316)
Q Consensus       256 ~d~~~~~w~~~~~~~~  271 (316)
                      .++ +.++++.+++..
T Consensus       246 ~~~-iEV~~~~~~~lv  260 (275)
T PF00780_consen  246 SNS-IEVRSLETGELV  260 (275)
T ss_pred             CCE-EEEEECcCCcEE
Confidence            765 999999988543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=1.2  Score=38.19  Aligned_cols=154  Identities=8%  Similarity=0.039  Sum_probs=99.4

Q ss_pred             cEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160           94 HITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        94 ~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      .-..++.++.+. .++.. .+..|.+.|....                ..........   ....+++ ++++..+..+.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~----------------~~~~~~~vG~---~P~~~~~-~~~~~~vYV~n  134 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN----------------TVLGSIPVGL---GPVGLAV-DPDGKYVYVAN  134 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCccc----------------ceeeEeeecc---CCceEEE-CCCCCEEEEEe
Confidence            345678888887 45553 5799999996654                3333332222   2677888 89998777765


Q ss_pred             c---CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCC------CCCCcccceee
Q 021160          172 D---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPP------LPDNAEKIMKA  241 (316)
Q Consensus       172 ~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~  241 (316)
                      .   ++.+.+.|..+.+.+.....-..+ ..+++.|+++.+ ++-..++.|.+.|.....+.+      ...... ....
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i  212 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGI  212 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceE
Confidence            5   689999999999988886543334 889999999964 444578999999987766442      211111 2233


Q ss_pred             eecCCCCc-eeEEecCC--CeEEEEEecccCc
Q 021160          242 NKQGREDH-SRITLTPD--VIMHVLRLQRRQT  270 (316)
Q Consensus       242 ~~~~~~~~-~~~s~~~d--~~~~~w~~~~~~~  270 (316)
                      . +.+++. ..++...+  +.+...|...+..
T Consensus       213 ~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         213 A-VDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             E-ECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            3 455554 44444443  5677777665533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.61  E-value=1.4  Score=38.39  Aligned_cols=160  Identities=13%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             ceEEEEECCCCCcEEEEE-ecCC----cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe-EEE
Q 021160           36 RLNAIVIDPRNPNYFAVG-GSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LIS  109 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g-~~dg----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s  109 (316)
                      .+...+++|++ +++|.+ +..|    .++++|+++++..             ...+ .  ......+.|.++++. +.+
T Consensus       125 ~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l-------------~d~i-~--~~~~~~~~W~~d~~~~~y~  187 (414)
T PF02897_consen  125 SLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL-------------PDGI-E--NPKFSSVSWSDDGKGFFYT  187 (414)
T ss_dssp             EEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE-------------EEEE-E--EEESEEEEECTTSSEEEEE
T ss_pred             EeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc-------------CCcc-c--ccccceEEEeCCCCEEEEE
Confidence            44578899999 666654 4444    4999999998732             1111 1  111223999999884 444


Q ss_pred             ecC-----------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---C-C
Q 021160          110 YND-----------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-G  174 (316)
Q Consensus       110 ~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d-g  174 (316)
                      ..+           ..|+.|.+.+...              .-...+...........+.. ++++++++..+.   + .
T Consensus       188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~--------------~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s  252 (414)
T PF02897_consen  188 RFDEDQRTSDSGYPRQVYRHKLGTPQS--------------EDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSES  252 (414)
T ss_dssp             ECSTTTSS-CCGCCEEEEEEETTS-GG--------------G-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEE
T ss_pred             EeCcccccccCCCCcEEEEEECCCChH--------------hCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCC
Confidence            321           2377778766510              11133444333211456776 899998876443   2 4


Q ss_pred             eEEEEeccCC----eeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC
Q 021160          175 HLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD  227 (316)
Q Consensus       175 ~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~  227 (316)
                      .+++.++..+    .....+..+...+....-+..+.+++...   ..+.|...++....
T Consensus       253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence            5788888764    22333333333333332233444443332   23455555665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.61  E-value=0.91  Score=36.29  Aligned_cols=154  Identities=10%  Similarity=0.096  Sum_probs=86.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      -...+.|..++ .++-+.+.-|  .|+.+|+.+++.......+              ....-..++...+.-+..+=.++
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--------------~~~FgEGit~~~d~l~qLTWk~~  110 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLP--------------PRYFGEGITILGDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-T--------------TT--EEEEEEETTEEEEEESSSS
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECC--------------ccccceeEEEECCEEEEEEecCC
Confidence            34578886667 6777776555  6889999998743211111              01112233333332233444789


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                      ...+||..+.                +.+..+.-...   =+.++.   +++.|+.......++++|..+.+....+...
T Consensus       111 ~~f~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  111 TGFVYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EEEEEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             eEEEEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            9999999876                56666654332   466764   5667777777889999999887776665432


Q ss_pred             c-----cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          194 R-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       194 ~-----~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .     ..++.+.|. +|...|=.-....|..-|+.++.
T Consensus       169 ~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  169 DNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             ETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             ECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence            1     245667665 45444444444555556666654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.49  E-value=1  Score=36.17  Aligned_cols=108  Identities=10%  Similarity=0.139  Sum_probs=68.9

Q ss_pred             EEEEEEccCCCe-EEEe-cCC-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160           95 ITGLAYSNTSEL-LISY-NDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        95 i~~~~~~~~~~~-l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      ...++++|.... ++.. .-| ...++|....                ....++....+....-.=.| +|+|.+|+..-
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATE  132 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATE  132 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeec
Confidence            345777887652 2333 334 4678888776                34444433332211222235 99999998754


Q ss_pred             c-----CCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          172 D-----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       172 ~-----dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                      +     .|.|-+||.+.+ +.+..+..|.-....+.|.+||+.++.++  |-|..-
T Consensus       133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth  186 (366)
T COG3490         133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH  186 (366)
T ss_pred             CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence            3     467899998743 45667788887788899999999988775  444444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.39  E-value=0.14  Score=40.10  Aligned_cols=78  Identities=12%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             ECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccc--cccCCCcccEEEEEEccCCCeEEEecCCcEEEEE
Q 021160           42 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR--HLIGKNNIHITGLAYSNTSELLISYNDELVYLFE  119 (316)
Q Consensus        42 ~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd  119 (316)
                      +...+ .++++-+.+|.+++||+.+++......   ++..+...  .........|..+.++.+|.-+++-++|..+.|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~---Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPV---SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCc---cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            33445 789999999999999999887543211   11111000  0000356778999999999877776778899999


Q ss_pred             cCCC
Q 021160          120 KNMG  123 (316)
Q Consensus       120 ~~~~  123 (316)
                      ..-+
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            7654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02713 hypothetical protein; Provisional

Probab=95.34  E-value=1.5  Score=39.88  Aligned_cols=136  Identities=9%  Similarity=0.042  Sum_probs=65.3

Q ss_pred             CCcEEEEeccCC-----eEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCCC-------------------
Q 021160          163 NDEYVMSGSDCG-----HLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEK-------------------  216 (316)
Q Consensus       163 ~~~~l~~~~~dg-----~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-------------------  216 (316)
                      ++...+.|+.++     .+..||+.+.+-.  ..++........++.  ++++.+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            577777777654     4788998765432  222221111122222  577777777542                   


Q ss_pred             ----cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC------CeEEEEEecccCcceeE-Eeecccccccc
Q 021160          217 ----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYR-ERRYNAADFES  285 (316)
Q Consensus       217 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d------~~~~~w~~~~~~~~~~~-~~~~~~~~~~~  285 (316)
                          .+..||+.+.+...+..-..+.........++.+.+.|+.+      ..+..+|..+.+..... ...........
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence                47789988876333322111111111122345666666643      23456666551122211 11111112222


Q ss_pred             cCCCCeEEEEeccCC
Q 021160          286 DEEEGETYLLGFSDS  300 (316)
Q Consensus       286 ~~~~~~v~~~~~~~~  300 (316)
                      ..-+|+||+++--++
T Consensus       509 ~~~~~~iyv~Gg~~~  523 (557)
T PHA02713        509 ILHDNTIMMLHCYES  523 (557)
T ss_pred             EEECCEEEEEeeecc
Confidence            234566999875444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.22  E-value=0.042  Score=50.46  Aligned_cols=186  Identities=11%  Similarity=0.075  Sum_probs=93.9

Q ss_pred             ceeeEEEEeeC--CCcceEEEeccccccccCCCCccceEEEEECC---CCCcEEEEEecCCcEEEEeCcCCcccCCCCCC
Q 021160            2 VLFNMLFDLRS--DSATRLFYCSSFSENSKQPMNSIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         2 ~g~v~vwd~~~--~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~   76 (316)
                      +|.+.|||+..  ++..+-+..+-...      -...+.-+.|.|   .. .++..+-.++.+++.+..+...       
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p------~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~-------  217 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITP------YGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR-------  217 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCc------CCCCcceeeeccccccc-ceeeeccCCCceeEeeechHHH-------
Confidence            57788999863  22222222211111      122334555554   44 6788888999999988765431       


Q ss_pred             CCceecccccccCCCcccEEEEE-----------EccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcce
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLA-----------YSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV  144 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  144 (316)
                               .++.+|...+..++           .+|||+.++. +.||.+..|.+.-.....           ..+...
T Consensus       218 ---------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~-----------~rclhe  277 (1283)
T KOG1916|consen  218 ---------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV-----------HRCLHE  277 (1283)
T ss_pred             ---------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc-----------Hhhhhc
Confidence                     11133444333332           6888887776 578887777653221111           123344


Q ss_pred             eeCCcCCceeeeEEEec--------CCCcEEEEec-cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCC--------
Q 021160          145 YSGHRNSQTVKGVNFFG--------PNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP--------  207 (316)
Q Consensus       145 ~~~~~~~~~i~~~~~~~--------~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------  207 (316)
                      .+.|.....+..+ |+.        +.-.++++++ .+..+++|.-...+|+..  -....|..+. -+++.        
T Consensus       278 wkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~  353 (1283)
T KOG1916|consen  278 WKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQ  353 (1283)
T ss_pred             cCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhH
Confidence            4444432222222 211        0112444444 466789998776666511  1122333333 22222        


Q ss_pred             ----eEEEEeCCCcEEEecCCC
Q 021160          208 ----MFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       208 ----~l~s~~~d~~i~iwd~~~  225 (316)
                          .+++-+.++.|.+|--+.
T Consensus       354 ~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  354 WMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HHHHHHHHhhhHHHHHHhhcch
Confidence                134566788999996544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.21  E-value=0.098  Score=28.62  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=26.6

Q ss_pred             cceEEEEECCCCC--cEEEEEecCCcEEEEeCcC
Q 021160           35 IRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRK   66 (316)
Q Consensus        35 ~~v~~~~~~~~~~--~~l~~g~~dg~v~~wd~~~   66 (316)
                      +.|.++.|+|...  .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998664  5888888889999999995

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.16  E-value=1.4  Score=35.65  Aligned_cols=170  Identities=11%  Similarity=0.098  Sum_probs=96.3

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      -...|+++.|+|+. +.|++......-.|+=...|+++..+         ...    + -.....++|...|++.++- .
T Consensus        84 ~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gdlirti---------PL~----g-~~DpE~Ieyig~n~fvi~dER  148 (316)
T COG3204          84 ETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTI---------PLT----G-FSDPETIEYIGGNQFVIVDER  148 (316)
T ss_pred             ccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEe---------ccc----c-cCChhHeEEecCCEEEEEehh
Confidence            34569999999998 55555555555556655567644322         111    1 1223467777777777775 5


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-E--E
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-V--R  188 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~--~  188 (316)
                      +..++++.++.......    .... . -++.... +.+ +....++| +|....+..+=+..-+.||....+.. +  .
T Consensus       149 ~~~l~~~~vd~~t~~~~----~~~~-~-i~L~~~~-k~N-~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~  219 (316)
T COG3204         149 DRALYLFTVDADTTVIS----AKVQ-K-IPLGTTN-KKN-KGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVH  219 (316)
T ss_pred             cceEEEEEEcCCccEEe----ccce-E-EeccccC-CCC-cCceeeec-CCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence            88888888765421000    0000 0 0111111 111 34788999 88888888888877777777653321 1  1


Q ss_pred             EeecC-------ccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCC
Q 021160          189 LMVGD-------RHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       189 ~~~~~-------~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~  226 (316)
                      ....+       -..|.++.|++.. ..++.+.+++.+--.|....
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            11111       1246677787644 44666666777666666554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.06  E-value=1.4  Score=39.23  Aligned_cols=123  Identities=7%  Similarity=0.030  Sum_probs=72.8

Q ss_pred             cccEEEEEEccCC-----CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-C--CceeeeEEEecCC
Q 021160           92 NIHITGLAYSNTS-----ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-N--SQTVKGVNFFGPN  163 (316)
Q Consensus        92 ~~~i~~~~~~~~~-----~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~  163 (316)
                      -..|..+.|.|-+     .+||.--.+.|.+|.+-.....           +.+.+.....+- .  +.-...+.| +|.
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e-----------~~K~l~sQtcEi~e~~pvLpQGCVW-HPk  123 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE-----------RNKLLMSQTCEIREPFPVLPQGCVW-HPK  123 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccc-----------cccceeeeeeeccCCcccCCCcccc-cCC
Confidence            3568899999964     2666677889999998632100           001111111110 0  000123456 888


Q ss_pred             CcEEEEeccCCeEEEEeccC--CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 021160          164 DEYVMSGSDCGHLFIWKKKG--GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD  227 (316)
Q Consensus       164 ~~~l~~~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~  227 (316)
                      ...|+.-.....-.+++++.  .+....+. -.+.|.|.+|.+||+.|+.+- ..=.-+|||-..+.
T Consensus       124 ~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  124 KAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             CceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence            88887766655555666653  23333343 457899999999999866553 33456899966543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.74  E-value=2.6  Score=36.68  Aligned_cols=182  Identities=9%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec----------CCcEEEEeCcCCcccCCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~----------dg~v~~wd~~~~~~~~~~   73 (316)
                      .|+++|+.+++...-...            ...-..++|.+++..++.+...          ...|+.|.+.+....   
T Consensus       151 ~l~v~Dl~tg~~l~d~i~------------~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~---  215 (414)
T PF02897_consen  151 TLRVFDLETGKFLPDGIE------------NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE---  215 (414)
T ss_dssp             EEEEEETTTTEEEEEEEE------------EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG---
T ss_pred             EEEEEECCCCcCcCCccc------------ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh---
Confidence            578888887754322111            1112349999998444455432          223677777665410   


Q ss_pred             CCCCCceecccccccCC-Ccc-cEEEEEEccCCCeEEE-e-c--C-CcEEEEEcCCCCCCCCccCCccccccCCCcceee
Q 021160           74 SSDTPVDTFCPRHLIGK-NNI-HITGLAYSNTSELLIS-Y-N--D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS  146 (316)
Q Consensus        74 ~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~s-~-~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (316)
                                ...+... ... ....+..++++++++. . .  + ..+++.++....            ........+.
T Consensus       216 ----------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~------------~~~~~~~~l~  273 (414)
T PF02897_consen  216 ----------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG------------SPDAKPKLLS  273 (414)
T ss_dssp             -----------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT------------TSS-SEEEEE
T ss_pred             ----------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC------------CCcCCcEEEe
Confidence                      0111122 122 2667889999995543 2 2  3 458888887630            0002333343


Q ss_pred             CCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEeccCCee---EEEeecCcc--ceEEEEEcCCCCe-EEEEeCCC-
Q 021160          147 GHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKL---VRLMVGDRH--VVNQLEPHPHIPM-FATCGIEK-  216 (316)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~~~~~---~~~~~~~~~--~v~~~~~~p~~~~-l~s~~~d~-  216 (316)
                      ..... ....+.. . .+.+++...   ..+.|...++.....   ...+..+..  .+..+..  .+.+ ++.-..++ 
T Consensus       274 ~~~~~-~~~~v~~-~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  274 PREDG-VEYYVDH-H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS  348 (414)
T ss_dssp             ESSSS--EEEEEE-E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred             CCCCc-eEEEEEc-c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence            33322 1333433 2 333333332   256677777776542   224545554  3444444  4445 44444444 


Q ss_pred             -cEEEecCC-CCC
Q 021160          217 -TVKLWAPM-PTD  227 (316)
Q Consensus       217 -~i~iwd~~-~~~  227 (316)
                       .|+++++. +..
T Consensus       349 ~~l~v~~~~~~~~  361 (414)
T PF02897_consen  349 SRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEEEEETT-TEE
T ss_pred             cEEEEEECCCCcE
Confidence             58889988 443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=0.7  Score=44.10  Aligned_cols=145  Identities=10%  Similarity=-0.045  Sum_probs=82.2

Q ss_pred             cccEEEEEEccCCCeEEE--e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCcCCceeeeEEEecCC-CcE
Q 021160           92 NIHITGLAYSNTSELLIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPN-DEY  166 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~~  166 (316)
                      ..++..+...+|+.+.+.  + .+..|..||++......        +.+..++.. -..........++.| .|. ...
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~--------~~~~~pl~~s~ts~ek~vf~~~~~w-nP~vp~n  170 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESR--------YETTVPLKNSATSFEKPVFQLKNVW-NPLVPLN  170 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhh--------hhhccccccccchhccccccccccc-cCCccch
Confidence            345667777888774333  3 45678999997642100        000001100 001111112456677 443 334


Q ss_pred             EEEeccCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC---CC-cccceee
Q 021160          167 VMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP---DN-AEKIMKA  241 (316)
Q Consensus       167 l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~-~~~~~~~  241 (316)
                      .+....|+.|++..+... +.+..++ .....++++|+|.|+.++.|-..|++.-|.........++   .. .-.+..+
T Consensus       171 ~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v  249 (1405)
T KOG3630|consen  171 SAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSV  249 (1405)
T ss_pred             hhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEE
Confidence            566677888888876532 2233332 3457899999999999999999999999987665322222   11 2345566


Q ss_pred             eecCC
Q 021160          242 NKQGR  246 (316)
Q Consensus       242 ~~~~~  246 (316)
                      .|..+
T Consensus       250 ~Wl~t  254 (1405)
T KOG3630|consen  250 TWLST  254 (1405)
T ss_pred             EEecc
Confidence            65444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.71  E-value=2.5  Score=36.40  Aligned_cols=195  Identities=12%  Similarity=0.061  Sum_probs=82.7

Q ss_pred             ceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe------cCCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~------~dg~v~~wd~~~~~~~~~~~   74 (316)
                      ++.|.|+|+.+... .++...-+.++...-.|- ..-..+-.-|+| ..++++-      .-|.+.++|-++.++.....
T Consensus        97 SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~-s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We  174 (461)
T PF05694_consen   97 SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL-SRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWE  174 (461)
T ss_dssp             T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E-EEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--
T ss_pred             cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC-CCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceec
Confidence            46789999985443 233333322111110000 112223334667 6777652      23557777777655322111


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEEec---------------------CCcEEEEEcCCCCCCCCccCCc
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---------------------DELVYLFEKNMGLGPSPLSLSP  133 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---------------------d~~i~iwd~~~~~~~~~~~~~~  133 (316)
                      .+            .+....-..+-|.|..+.++|+.                     ..++.+||+.+.          
T Consensus       175 ~~------------~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----------  232 (461)
T PF05694_consen  175 KD------------RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR----------  232 (461)
T ss_dssp             SB-------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT----------
T ss_pred             cC------------CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC----------
Confidence            00            11122334566666666555542                     245999999888          


Q ss_pred             cccccCCCcceeeCCcCCceeeeEEE-ecCCCcEEEEe-ccCCeEEEEec-cCCe----eEEEeecC-------------
Q 021160          134 EDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSG-SDCGHLFIWKK-KGGK----LVRLMVGD-------------  193 (316)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~-~~dg~v~~wd~-~~~~----~~~~~~~~-------------  193 (316)
                            +.++++.-.........+.| +.|+..+-.++ .....|..|-- ..++    .+-.+...             
T Consensus       233 ------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~  306 (461)
T PF05694_consen  233 ------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP  306 (461)
T ss_dssp             ------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred             ------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence                  77888775543333556666 24444443333 33555655543 3332    11122110             


Q ss_pred             ----ccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCC
Q 021160          194 ----RHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPT  226 (316)
Q Consensus       194 ----~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~  226 (316)
                          ..-|+.+..|.|.++|. ++-.+|.|+.||+...
T Consensus       307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                24578999999999965 4558999999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.69  E-value=1.8  Score=39.45  Aligned_cols=119  Identities=13%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc--cCCC-eEEEecCC
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS--NTSE-LLISYNDE  113 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~s~~d~  113 (316)
                      ..-+.-+..+ +..++-+....+.|||.+.+.+..             ... -...+.|..+.|.  |+++ +|+.|-..
T Consensus        32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~-------------~~~-f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEY-------------EES-FSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEE-------------eee-ecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            3444445544 444445556779999998775311             111 1346788999985  4666 55558889


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCccee--eCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEec
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  181 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~  181 (316)
                      .|.+|.-....  ....     .+...+++.+  ..++. .+|.+..| -++|.+++.++  ..+.++|-
T Consensus        97 ~v~l~~Q~R~d--y~~~-----~p~w~~i~~i~i~~~T~-h~Igds~W-l~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   97 HVLLYTQLRYD--YTNK-----GPSWAPIRKIDISSHTP-HPIGDSIW-LKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEEEccchh--hhcC-----CcccceeEEEEeecCCC-CCccceeE-ecCCeEEEEeC--CEEEEECC
Confidence            99988653210  0000     1111222322  23331 23888888 78887665443  56778774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.59  E-value=2.5  Score=35.88  Aligned_cols=197  Identities=10%  Similarity=0.031  Sum_probs=88.9

Q ss_pred             EEEECCCCCcEEEEEecCCc--EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcE
Q 021160           39 AIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELV  115 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i  115 (316)
                      .=+|.++|.++|.++..||.  +.+.|+.+++..               ++..+-........++|+++.++- -....|
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---------------QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l  104 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---------------QLTDGPGDNTFGGFLSPDDRALYYVKNGRSL  104 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---------------E---SS-B-TTT-EE-TTSSEEEEEETTTEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE---------------ECccCCCCCccceEEecCCCeEEEEECCCeE
Confidence            44678888666666655554  566677777532               221211121223456787776554 456788


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe-cCCCcEEEEecc----------------------
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSD----------------------  172 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~----------------------  172 (316)
                      +-.|+++.                +....+......  +-...|. +.++..++-.-.                      
T Consensus       105 ~~vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p  166 (386)
T PF14583_consen  105 RRVDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP  166 (386)
T ss_dssp             EEEETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred             EEEECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence            88898886                443444444432  3233331 344554432211                      


Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC----c-EEEecCCC--CCCCCCCCC-cccceeeeec
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK----T-VKLWAPMP--TDFPPLPDN-AEKIMKANKQ  244 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~----~-i~iwd~~~--~~~~~~~~~-~~~~~~~~~~  244 (316)
                      ...|.-.|+.+|+....+. -...+..+.|+|..+.+++=+..|    . -|||-++.  .....+..+ ...+..-.+|
T Consensus       167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw  245 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW  245 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred             CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence            1236666777777554444 346778899999887765554333    2 36775543  222222222 2345566677


Q ss_pred             CCCCceeEE--e---cCCCeEEEEEecccC
Q 021160          245 GREDHSRIT--L---TPDVIMHVLRLQRRQ  269 (316)
Q Consensus       245 ~~~~~~~~s--~---~~d~~~~~w~~~~~~  269 (316)
                      .+++..+.-  .   ..+..|.-.++.+++
T Consensus       246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             -TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             cCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            887765543  2   223344445555543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.57  E-value=0.039  Score=50.70  Aligned_cols=165  Identities=11%  Similarity=0.042  Sum_probs=90.4

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC--CcccCCCCCCCCceecccccccCCCcccEEEEEEccC---CC
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SE  105 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  105 (316)
                      +|..+.|-.+.|.......++  -.-|.+.+|++.-  |++...          ...+........+.-+.|.|-   .-
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~----------l~v~~~~p~gs~~~~V~wcp~~~~~~  196 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQ----------LEVTPITPYGSDPQLVSWCPIAVNKV  196 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccc----------eEEeecCcCCCCcceeeecccccccc
Confidence            456788888888543322222  3347788999873  322111          111111222333455666663   22


Q ss_pred             eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE----------ecCCCcEEEEeccCC
Q 021160          106 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF----------FGPNDEYVMSGSDCG  174 (316)
Q Consensus       106 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~l~~~~~dg  174 (316)
                      ++..+ .++.+++......                 ....+.+|...  +..++|          .+|||..+++++.||
T Consensus       197 ~ic~~~~~~~i~lL~~~ra-----------------~~~l~rsHs~~--~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINRA-----------------LRSLFRSHSQR--VTDMAFFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             eeeeccCCCceeEeeechH-----------------HHHHHHhcCCC--cccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence            44444 5788888777654                 33455556543  433332          289999999999999


Q ss_pred             eEEEEecc-CC----eeEEEeecCcc-ceEEEEEcCCC-------C--eEEEEe-CCCcEEEecCCCC
Q 021160          175 HLFIWKKK-GG----KLVRLMVGDRH-VVNQLEPHPHI-------P--MFATCG-IEKTVKLWAPMPT  226 (316)
Q Consensus       175 ~v~~wd~~-~~----~~~~~~~~~~~-~v~~~~~~p~~-------~--~l~s~~-~d~~i~iwd~~~~  226 (316)
                      .+++|.+. +|    .++...+.|.+ +-.|.-++.+.       .  ++++++ ....+++|....-
T Consensus       258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence            99999864 33    33445555652 22222233221       1  234444 4456888986543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.54  E-value=1  Score=38.79  Aligned_cols=87  Identities=17%  Similarity=0.124  Sum_probs=57.7

Q ss_pred             CCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC---
Q 021160           89 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---  164 (316)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---  164 (316)
                      ......+.++..+|.+++.+.+ +=|.|.++|+.++                ..++.++|..+...-+--.. ....   
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAqc~wi~~~-~~~~~~~  366 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQCGWIEVP-EEGDRDR  366 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccceEEEEEee-ccccccc
Confidence            3455678899999998887776 5789999999988                57777777765421111111 1111   


Q ss_pred             -------------c-EEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          165 -------------E-YVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       165 -------------~-~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                                   . +++-+-.-|.|-+|.+++|..+..+..
T Consensus       367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence                         1 223345678899999988887776653

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.36  E-value=3.2  Score=36.50  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=49.4

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEe---------ccCCeeEE---Eee--------cCccceEEEEEcCCC---CeEE
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV--------GDRHVVNQLEPHPHI---PMFA  210 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd---------~~~~~~~~---~~~--------~~~~~v~~~~~~p~~---~~l~  210 (316)
                      |..+.. ++.|..++..+.+|.+.++=         ++.|+..-   ++.        ...-.+..++|||+.   ..|.
T Consensus       106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            666776 89999999988888766543         22343221   111        111246778999986   4577


Q ss_pred             EEeCCCcEEEecCCCCC
Q 021160          211 TCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       211 s~~~d~~i~iwd~~~~~  227 (316)
                      .-+.|.+||+|++....
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            77779999999998765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.36  E-value=0.39  Score=37.57  Aligned_cols=69  Identities=16%  Similarity=0.179  Sum_probs=52.5

Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEe-------e-------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      ...+.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            346888999999999999999988764322       1       2446788899998887777766 588999998776


Q ss_pred             CCCC
Q 021160          227 DFPP  230 (316)
Q Consensus       227 ~~~~  230 (316)
                      ....
T Consensus        98 ~W~~  101 (219)
T PF07569_consen   98 CWIR  101 (219)
T ss_pred             eeEE
Confidence            6433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.33  E-value=1.9  Score=40.17  Aligned_cols=71  Identities=15%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccC---------Cee---EEEee--------cCccceEEEEEcCCC---CeEE
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---------GKL---VRLMV--------GDRHVVNQLEPHPHI---PMFA  210 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---------~~~---~~~~~--------~~~~~v~~~~~~p~~---~~l~  210 (316)
                      |..+.. +++|.+++..+..|.+.+.=.+.         |+.   .+.+.        .+...|..+.|||.+   ..|+
T Consensus        87 v~~i~~-n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   87 VHQISL-NPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             EEEEEE-CCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            888888 99999999988876554433221         111   11111        233578899999974   6788


Q ss_pred             EEeCCCcEEEecCCC
Q 021160          211 TCGIEKTVKLWAPMP  225 (316)
Q Consensus       211 s~~~d~~i~iwd~~~  225 (316)
                      .-..|+++|+||+..
T Consensus       166 vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  166 VLTSDNTLRLYDISD  180 (717)
T ss_pred             EEecCCEEEEEecCC
Confidence            888899999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=1.5  Score=37.66  Aligned_cols=160  Identities=12%  Similarity=0.074  Sum_probs=89.6

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcE
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV  115 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i  115 (316)
                      -+.+-|+..+ ++++ +...|.+.-|-+....       +.-.-.++     ....++|.++.|++|.+.+|.- .+.+|
T Consensus        25 sngvFfDDaN-kqlf-avrSggatgvvvkgpn-------dDVpiSfd-----m~d~G~I~SIkFSlDnkilAVQR~~~~v   90 (657)
T KOG2377|consen   25 SNGVFFDDAN-KQLF-AVRSGGATGVVVKGPN-------DDVPISFD-----MDDKGEIKSIKFSLDNKILAVQRTSKTV   90 (657)
T ss_pred             ccceeeccCc-ceEE-EEecCCeeEEEEeCCC-------CCCCceee-----ecCCCceeEEEeccCcceEEEEecCceE
Confidence            3455565544 3333 3344666667665332       11111121     3345699999999999999885 79999


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDR  194 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~  194 (316)
                      .+++......              +.............|....| ..+ .-+|..+..| +-+|-... .+.++..+.|.
T Consensus        91 ~f~nf~~d~~--------------~l~~~~~ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~  153 (657)
T KOG2377|consen   91 DFCNFIPDNS--------------QLEYTQECKTKNANILGFCW-TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN  153 (657)
T ss_pred             EEEecCCCch--------------hhHHHHHhccCcceeEEEEE-ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc
Confidence            9998743200              11111111111123888888 444 4455555444 45555433 33455566788


Q ss_pred             cceEEEEEcCCCCeEEEE-e-CCCcEEEecCCCCC
Q 021160          195 HVVNQLEPHPHIPMFATC-G-IEKTVKLWAPMPTD  227 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~-~-~d~~i~iwd~~~~~  227 (316)
                      -.|+-..|+|+.+.++.+ + ..+++.-+-++++.
T Consensus       154 ~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  154 LNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             cCccEEEEccccceEeeeccccccccccEEEeece
Confidence            889999999988773333 3 34444444444443

>PRK13684 Ycf48-like protein; Provisional

Probab=94.31  E-value=2.8  Score=35.30  Aligned_cols=154  Identities=11%  Similarity=0.007  Sum_probs=84.2

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      .+.+.++.+.|++ .+++++ ..|.+..- .+.+.           .  ........-...++++.+.++++.++.+..|
T Consensus       172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s-~~~gg-----------~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G  235 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVAVS-SRGNFYST-WEPGQ-----------T--AWTPHQRNSSRRLQSMGFQPDGNLWMLARGG  235 (334)
T ss_pred             cceEEEEEECCCC-eEEEEe-CCceEEEE-cCCCC-----------C--eEEEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence            4568889999977 565555 44554321 11111           0  0001112234678899999999987777777


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      .+++=..+.+                .........  .....+.++.+ .+++..++++ .+|.+. .....|+.-....
T Consensus       236 ~~~~~s~d~G----------------~sW~~~~~~~~~~~~~l~~v~~-~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~  296 (334)
T PRK13684        236 QIRFNDPDDL----------------ESWSKPIIPEITNGYGYLDLAY-RTPGEIWAGG-GNGTLL-VSKDGGKTWEKDP  296 (334)
T ss_pred             EEEEccCCCC----------------CccccccCCccccccceeeEEE-cCCCCEEEEc-CCCeEE-EeCCCCCCCeECC
Confidence            7653233333                111111111  01122778888 7777665554 566554 4445455433332


Q ss_pred             ---cCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          192 ---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       192 ---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                         .-......+.|..+++.+++| ..|.|--|+-
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~  330 (334)
T PRK13684        297 VGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG  330 (334)
T ss_pred             cCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence               122357778887776666655 5788877764

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.13  E-value=1.3  Score=38.63  Aligned_cols=158  Identities=11%  Similarity=0.153  Sum_probs=91.1

Q ss_pred             CCccceEEEEECCCCCcEE-EEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-----
Q 021160           32 MNSIRLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-----  105 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----  105 (316)
                      |..-...-+..+-+..++| ..|+....++-.|++.|++..+         +      .-|.. + -+.|.|..+     
T Consensus       464 GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvvee---------W------~~~dd-v-vVqy~p~~kf~qmt  526 (776)
T COG5167         464 GKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEE---------W------DLKDD-V-VVQYNPYFKFQQMT  526 (776)
T ss_pred             CCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeE---------e------ecCCc-c-eeecCCchhHHhcC
Confidence            3333344444444333444 4466677788888888774311         1      12222 2 456666532     


Q ss_pred             ---eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcce--eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160          106 ---LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  180 (316)
Q Consensus       106 ---~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd  180 (316)
                         -|++-++..|.-.|.+-..               ..+..  .+.........+..  .....++++++..|.|++||
T Consensus       527 ~eqtlvGlS~~svFrIDPR~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyD  589 (776)
T COG5167         527 DEQTLVGLSDYSVFRIDPRARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYD  589 (776)
T ss_pred             ccceEEeecccceEEecccccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeeh
Confidence               4555567777777776441               11111  11111111133332  34567999999999999999


Q ss_pred             ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          181 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      .-..+....+++....|..+..+.+|+++++.+ ...+.+-|++
T Consensus       590 Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         590 RIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             hhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            664444455667778899999999999865544 3567777764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.07  E-value=2.7  Score=34.09  Aligned_cols=119  Identities=8%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             CCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE
Q 021160           89 GKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  167 (316)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  167 (316)
                      .+....+.++.|+|+.+.|.+ .+...-.++=...+                ..++++.-..- .....+.| -.++++.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fv  143 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFV  143 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEE
Confidence            344555999999999986665 55444444433333                35554432111 12456777 6678888


Q ss_pred             EEeccCCeEEEEeccCCeeEE-------Eee--cC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          168 MSGSDCGHLFIWKKKGGKLVR-------LMV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       168 ~~~~~dg~v~~wd~~~~~~~~-------~~~--~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      ++--.++.+.++.+.......       .+.  .+ ....-.++|.|....|..+-+-.-+.||.+..
T Consensus       144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             EEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            877778899888876542211       111  12 45677899999998888888777788877654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.78  E-value=5  Score=36.24  Aligned_cols=26  Identities=15%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             CCCc---EEEEeccCCeEEEEeccCCeeE
Q 021160          162 PNDE---YVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       162 ~~~~---~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      .+|+   .++.+..+|.+++.|..+|+++
T Consensus       310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            4565   7788999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=93.77  E-value=1.8  Score=39.15  Aligned_cols=65  Identities=6%  Similarity=0.046  Sum_probs=34.9

Q ss_pred             CCcEEEEeccC--------CeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160          163 NDEYVMSGSDC--------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~d--------g~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~  227 (316)
                      ++...+.|+.+        ..+..||..+.+-..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            45666666542        238889987665322  12111111112222  56666777654     467888888776


Q ss_pred             CC
Q 021160          228 FP  229 (316)
Q Consensus       228 ~~  229 (316)
                      ..
T Consensus       515 W~  516 (534)
T PHA03098        515 WT  516 (534)
T ss_pred             EE
Confidence            33

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.75  E-value=3.8  Score=35.08  Aligned_cols=103  Identities=17%  Similarity=0.304  Sum_probs=54.9

Q ss_pred             cEEEEEEccCCCeEEEec------------CC-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           94 HITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      ....|+|.++|+++++..            .+ .|.+++-..+.+.            ......+......  ...+++ 
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~------------~d~~~vfa~~l~~--p~Gi~~-   79 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK------------YDKSNVFAEELSM--VTGLAV-   79 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC------------cceeEEeecCCCC--ccceeE-
Confidence            456889999999887742            22 6777765433100            0112333333322  678888 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccC-----Ce--eE-EEeec----CccceEEEEEcCCCCeEEEEe
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKG-----GK--LV-RLMVG----DRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~-----~~--~~-~~~~~----~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      .+++ +++ ++.....++.|...     ++  .+ ..+..    +......++|.|+|.+.++-+
T Consensus        80 ~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        80 AVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             ecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            7777 444 44443333435431     12  11 22322    124477899999998855444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.60  E-value=3.2  Score=33.40  Aligned_cols=163  Identities=12%  Similarity=0.027  Sum_probs=88.6

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  114 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  114 (316)
                      .+.+.++++++..+.++...++.-.||-...+.              .......  ...+....|.+++.+.+.. .+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~   88 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG   88 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence            688999999994444444233444444444332              1111111  2367788999998866664 4555


Q ss_pred             EEEEE-cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEecc---CC---
Q 021160          115 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG---  184 (316)
Q Consensus       115 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~---~~---  184 (316)
                      ..++. ...+.               .....+........|..+.+ +|||..++...   .++.|.+--+.   .+   
T Consensus        89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~  152 (253)
T PF10647_consen   89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR  152 (253)
T ss_pred             eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence            55553 22221               11111211111014999999 99999888766   35677766543   23   


Q ss_pred             ---eeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEE-ecCCCCCCCC
Q 021160          185 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTDFPP  230 (316)
Q Consensus       185 ---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~i-wd~~~~~~~~  230 (316)
                         ............+..++|.+++.+++.+. .+..+.. ..+.......
T Consensus       153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~  203 (253)
T PF10647_consen  153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTP  203 (253)
T ss_pred             eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccc
Confidence               11122222346789999999998865554 3443433 4444444333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.55  E-value=4.2  Score=34.61  Aligned_cols=174  Identities=13%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---cCCc-EEEEeCcCCcccCCCCCCCCc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEY-ARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---~dg~-v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      .|.-.|+.+++...++..            +.-+..+-|+|..+.+|+-|-   .+.. -|||-+++..-        ..
T Consensus       169 ~i~~idl~tG~~~~v~~~------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~  228 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFED------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NV  228 (386)
T ss_dssp             EEEEEETTT--EEEEEEE------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------
T ss_pred             eEEEEECCCCceeEEEec------------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------cc
Confidence            455667777666555543            234678999999877777763   2332 36777654320        01


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEE--Ee-c---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLI--SY-N---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                      .....    ..-...+.-=-|.|+|..+.  +. .   +..|.-+|+.++                +....... . .  
T Consensus       229 ~~v~~----~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~----------------~~~~~~~~-p-~--  284 (386)
T PF14583_consen  229 KKVHR----RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG----------------ERRRLMEM-P-W--  284 (386)
T ss_dssp             EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------------------EEEEEEE---S--
T ss_pred             eeeec----CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC----------------CceEEEeC-C-c--
Confidence            10000    11134455556899997332  22 2   345666777665                22221111 1 1  


Q ss_pred             eeeEEEecCCCcEEEEeccC----------------CeEEEEeccCCeeEEEee---------cCcc-ceEEEEEcCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDC----------------GHLFIWKKKGGKLVRLMV---------GDRH-VVNQLEPHPHIP  207 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~d----------------g~v~~wd~~~~~~~~~~~---------~~~~-~v~~~~~~p~~~  207 (316)
                      -..+.. +++|.+++-=+.|                ..|++++++.++......         ++.. .=....|+||++
T Consensus       285 ~~H~~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk  363 (386)
T PF14583_consen  285 CSHFMS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGK  363 (386)
T ss_dssp             EEEEEE--TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSS
T ss_pred             eeeeEE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCC
Confidence            222222 6788876542222                256778887766432111         1111 113578999999


Q ss_pred             e-EEEEeCCCcEEEec
Q 021160          208 M-FATCGIEKTVKLWA  222 (316)
Q Consensus       208 ~-l~s~~~d~~i~iwd  222 (316)
                      + |.++...|...||-
T Consensus       364 ~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  364 WVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             EEEEEE-TTSS-EEEE
T ss_pred             EEEEECCCCCCccEEE
Confidence            9 55666778777764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.42  E-value=6.6  Score=37.37  Aligned_cols=151  Identities=9%  Similarity=0.069  Sum_probs=91.7

Q ss_pred             cEEEEEEccC-CCeEEEe-c----------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           94 HITGLAYSNT-SELLISY-N----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        94 ~i~~~~~~~~-~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                      .|.+..|..| +.+++.| .          .|.|.+|.....                ..++....+.-...+.++.-  
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------------~~L~~v~e~~v~Gav~aL~~--  837 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------------NSLELVAETVVKGAVYALVE--  837 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------------Cceeeeeeeeeccceeehhh--
Confidence            4556668777 4554443 2          356777777653                34444444443333555543  


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCC--Cccc
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD--NAEK  237 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~--~~~~  237 (316)
                      -+|+++|.-  ...|++|++.+.+.++.-..+..++..+...-.+..++.|.-=+.+.+.-.+..+  +..+..  +..+
T Consensus       838 fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W  915 (1096)
T KOG1897|consen  838 FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW  915 (1096)
T ss_pred             hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence            357766544  5689999999887777666777888888888888899999877776665544433  333221  2333


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +....  .-+...++-+..+|.+.+.+..
T Consensus       916 mtave--il~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  916 MTAVE--ILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eeeEE--EecCceEEeecccccEEEEEec
Confidence            32222  2244556666677777777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.27  E-value=0.37  Score=26.41  Aligned_cols=31  Identities=13%  Similarity=0.043  Sum_probs=25.2

Q ss_pred             cceEEEEEcCCCC---eEEEEeCCCcEEEecCCC
Q 021160          195 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       195 ~~v~~~~~~p~~~---~l~s~~~d~~i~iwd~~~  225 (316)
                      +.+.++.|+|...   +|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998554   677777788999999985

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=93.18  E-value=6  Score=35.31  Aligned_cols=63  Identities=5%  Similarity=-0.103  Sum_probs=34.1

Q ss_pred             CCcEEEEeccCC---eEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160          163 NDEYVMSGSDCG---HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       163 ~~~~l~~~~~dg---~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~  230 (316)
                      ++...+.|+.++   .+..||..+.+-..  .+....... ++ ..-++++.+.|+   .+.+||+.+.+...
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~  429 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTL  429 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeE
Confidence            567777776543   46778877654322  111111111 22 223566666664   57789998776433

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.88  E-value=1  Score=43.06  Aligned_cols=151  Identities=7%  Similarity=-0.003  Sum_probs=88.9

Q ss_pred             cceEEEEECCCCCcEEEEE--ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEEe
Q 021160           35 IRLNAIVIDPRNPNYFAVG--GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY  110 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g--~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~  110 (316)
                      -++..+...+++ ...++.  +.+-.|..||+++-.......    ...++...+.........++.|+|.-.  .++..
T Consensus       101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen  101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCccchhhhhc
Confidence            456666667776 443333  334468889998654211100    011111111122234566888998653  44555


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|+.|.+..+....               ..+..+. ..  ...++++| +|.|..++.|-..|++.-|... .+....+
T Consensus       176 ~dlsl~V~~~~~~~---------------~~v~s~p-~t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~i  235 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLA---------------QNVTSFP-VT--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSEI  235 (1405)
T ss_pred             cccchhhhhhhhhh---------------hhhcccC-cc--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeecc
Confidence            78988888765431               1222222 12  33899999 9999999999999999988754 4433333


Q ss_pred             ec---C-ccceEEEEEcCCCCeEE
Q 021160          191 VG---D-RHVVNQLEPHPHIPMFA  210 (316)
Q Consensus       191 ~~---~-~~~v~~~~~~p~~~~l~  210 (316)
                      ..   . ...|.+++|-....+++
T Consensus       236 p~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  236 PEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             cCCCcCCCcceeEEEEecceeEEE
Confidence            32   1 36899999987666644

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.68  E-value=2.2  Score=36.85  Aligned_cols=78  Identities=10%  Similarity=-0.066  Sum_probs=51.4

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCC-----------------Cc-eeEEe
Q 021160          194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRE-----------------DH-SRITL  254 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~s~  254 (316)
                      ...+.+++.+|.+++.|+...=|.|.++|+..+. ++..++..+.-+.-.....+                 .. +++-.
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            3468889999999887777667899999999887 45555544332211111100                 11 33456


Q ss_pred             cCCCeEEEEEecccCcc
Q 021160          255 TPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       255 ~~d~~~~~w~~~~~~~~  271 (316)
                      ...|.+.+|.++.+...
T Consensus       387 prRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRV  403 (415)
T ss_pred             ccCCeEEEEecCCCCEE
Confidence            66899999999887554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.62  E-value=6.3  Score=34.10  Aligned_cols=205  Identities=10%  Similarity=0.092  Sum_probs=89.2

Q ss_pred             cEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccC-CCcccEEEEEEccCCCeEEEe--c-----CCcEEEE
Q 021160           48 NYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY--N-----DELVYLF  118 (316)
Q Consensus        48 ~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~--~-----d~~i~iw  118 (316)
                      ++|+..+ ..+.|.+.|+.+....     +.-.+......+.. ..-..-..+-.-|+|++++++  .     -|-+.++
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~-----P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRK-----PRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             CcEEeeeeccCcEEEEECCCCCCC-----CceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            4555554 7889999999854311     11111111111111 011223344456788877773  2     2347788


Q ss_pred             EcCCCCCCCCccCCccccccCCCcceeeCCcC-CceeeeEEEecCCCcEEEEecc--------------------CCeEE
Q 021160          119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSD--------------------CGHLF  177 (316)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~--------------------dg~v~  177 (316)
                      |-++.                ........... ...-..+-| .|..+.+++..-                    ..++.
T Consensus       163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~  225 (461)
T PF05694_consen  163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH  225 (461)
T ss_dssp             -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred             cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence            87654                33333332221 112455555 666666666532                    34799


Q ss_pred             EEeccCCeeEEEeecCc--cceEEEEEc--CCCCe-EEEEeCCCcEEEecC-CCCC-----CCCCCCC------------
Q 021160          178 IWKKKGGKLVRLMVGDR--HVVNQLEPH--PHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------  234 (316)
Q Consensus       178 ~wd~~~~~~~~~~~~~~--~~v~~~~~~--p~~~~-l~s~~~d~~i~iwd~-~~~~-----~~~~~~~------------  234 (316)
                      +||+.+.+.++++.--.  ..+..+.|.  |+..+ ++.+.-..+|..|-- ..++     +..++..            
T Consensus       226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~  305 (461)
T PF05694_consen  226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK  305 (461)
T ss_dssp             EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred             EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence            99999999999986432  235556664  55555 666655555555532 3221     1111110            


Q ss_pred             ----cccceeeeecCCCCce-eEEecCCCeEEEEEecccCcceeE
Q 021160          235 ----AEKIMKANKQGREDHS-RITLTPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       235 ----~~~~~~~~~~~~~~~~-~~s~~~d~~~~~w~~~~~~~~~~~  274 (316)
                          .-+++.....+.|+++ .++.--.|.++.+|+.....+...
T Consensus       306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence                0122233325555554 567788999999999986655443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.58  E-value=8.7  Score=35.67  Aligned_cols=126  Identities=10%  Similarity=-0.017  Sum_probs=71.1

Q ss_pred             cEEEEEEccCC--CeEEE-ecCCcEEEEEcCCCCCCCCcc---C-CccccccCCCcceeeCCcCCceeeeEEEec--CCC
Q 021160           94 HITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLS---L-SPEDLQKREEPQVYSGHRNSQTVKGVNFFG--PND  164 (316)
Q Consensus        94 ~i~~~~~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  164 (316)
                      .|+-+....-|  ++|+. ..||.|.+|.++.-.......   . ........++...+...   ..++++++ .  ...
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~---~SaWGLdI-h~~~~~  177 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG---ASAWGLDI-HDYKKS  177 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC---CceeEEEE-EecCcc
Confidence            45555554433  35554 589999999874321000000   0 00000111222233322   23899998 5  667


Q ss_pred             cEEEEeccCCeEEEEeccCC--eeEE-EeecCccceEEEEEcCCC---C---eEEEEeCCCcEEEecC
Q 021160          165 EYVMSGSDCGHLFIWKKKGG--KLVR-LMVGDRHVVNQLEPHPHI---P---MFATCGIEKTVKLWAP  223 (316)
Q Consensus       165 ~~l~~~~~dg~v~~wd~~~~--~~~~-~~~~~~~~v~~~~~~p~~---~---~l~s~~~d~~i~iwd~  223 (316)
                      ++||+++....|.+|-....  +... .-..|...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            78888888888887765432  1111 111245678889997754   2   6888899999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.38  E-value=4.9  Score=32.29  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=91.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .|+.+|+.+.+..........-          ---.++... + .++...-.++...+||..+-+..         ..+.
T Consensus        69 ~l~~~d~~tg~~~~~~~l~~~~----------FgEGit~~~-d-~l~qLTWk~~~~f~yd~~tl~~~---------~~~~  127 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPLPPRY----------FGEGITILG-D-KLYQLTWKEGTGFVYDPNTLKKI---------GTFP  127 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-TTT------------EEEEEEET-T-EEEEEESSSSEEEEEETTTTEEE---------EEEE
T ss_pred             EEEEEECCCCcEEEEEECCccc----------cceeEEEEC-C-EEEEEEecCCeEEEEccccceEE---------EEEe
Confidence            6788888877655444443111          112344443 2 45555667899999999876622         2221


Q ss_pred             cccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eeeeEEE
Q 021160           84 PRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNF  159 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~  159 (316)
                           -  ...=+.++  .+++ +++|-....++.+|..+.                +..+.+....+..   .++.+.|
T Consensus       128 -----y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f----------------~~~~~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  128 -----Y--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF----------------KEVRTIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             --------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-----------------SEEEEEE-EETTEE---EEEEEE
T ss_pred             -----c--CCcceEEE--cCCCEEEEECCccceEEECCccc----------------ceEEEEEEEECCEECCCcEeEEE
Confidence                 1  12234454  4565 555546788999998765                4444444333222   2667777


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeec------------C---ccceEEEEEcCCCCe-EEEE
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG------------D---RHVVNQLEPHPHIPM-FATC  212 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------------~---~~~v~~~~~~p~~~~-l~s~  212 (316)
                      .  +|...|=.=....|...|..+|+....+..            +   ..-.+.+|+.|.... ++||
T Consensus       183 i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  183 I--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             E--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            3  566555555677888999999998876631            1   235788999987766 4554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.21  E-value=6.2  Score=33.13  Aligned_cols=167  Identities=15%  Similarity=0.156  Sum_probs=83.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCc------EEEEeCcCCcccCCCCCCCCceecccccccCC-------CcccEEEEEE
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY  100 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~------v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~  100 (316)
                      -+.++.+.+.|.+ ..+++-+.+|.      +..+++....-     ....+.......+...       -.....+|++
T Consensus        19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~   92 (326)
T PF13449_consen   19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQG-----GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV   92 (326)
T ss_pred             cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCC-----CccceEeccceeccCCCCCcCCcCCCChhHeEE
Confidence            5678999999755 45555566666      55555543110     0011111111111010       1114457888


Q ss_pred             ccCCCeEEEe-cC------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160          101 SNTSELLISY-ND------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  173 (316)
Q Consensus       101 ~~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  173 (316)
                      .++|.++++. .+      ..|..++.... ......++..-.......   ........+.++++ +|+|+.|+++.+.
T Consensus        93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G~-~~~~~~vP~~~~~~~~~~---~~~~~N~G~E~la~-~~dG~~l~~~~E~  167 (326)
T PF13449_consen   93 PPDGSFWISSEGGRTGGIPPRIRRFDLDGR-VIRRFPVPAAFLPDANGT---SGRRNNRGFEGLAV-SPDGRTLFAAMES  167 (326)
T ss_pred             ecCCCEEEEeCCccCCCCCCEEEEECCCCc-ccceEccccccccccCcc---ccccCCCCeEEEEE-CCCCCEEEEEECc
Confidence            7888888886 46      67888886622 100000000000000000   12222234889998 9999977666542


Q ss_pred             C-------e-------EEE--EeccC-Cee----EEEeec-----CccceEEEEEcCCCCeEEE
Q 021160          174 G-------H-------LFI--WKKKG-GKL----VRLMVG-----DRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       174 g-------~-------v~~--wd~~~-~~~----~~~~~~-----~~~~v~~~~~~p~~~~l~s  211 (316)
                      .       .       +++  ||..+ ++.    ...+..     ....+..+.+-+++++++.
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            2       1       444  44443 322    222222     3457888999999887653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.85  E-value=0.03  Score=47.86  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=98.6

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE--ecCCcE
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELV  115 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i  115 (316)
                      -...|-|.+. -++.++.+..+..||-......              .   ..-++....++|..++..++.  -..+.+
T Consensus        38 i~~~w~~e~~-nlavaca~tiv~~YD~agq~~l--------------e---~n~tg~aldm~wDkegdvlavlAek~~pi   99 (615)
T KOG2247|consen   38 IIHRWRPEGH-NLAVACANTIVIYYDKAGQVIL--------------E---LNPTGKALDMAWDKEGDVLAVLAEKTGPI   99 (615)
T ss_pred             ceeeEecCCC-ceehhhhhhHHHhhhhhcceec--------------c---cCCchhHhhhhhccccchhhhhhhcCCCe
Confidence            3556788874 4777778888888986533211              0   122445667888888864433  368899


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  194 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~  194 (316)
                      .+||+.+.                 ..+.+. +....  -.-+.| ++....++.+...|.+.+++..+.+.+-.+-.|.
T Consensus       100 ylwd~n~e-----------------ytqqLE~gg~~s--~sll~w-sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~  159 (615)
T KOG2247|consen  100 YLWDVNSE-----------------YTQQLESGGTSS--KSLLAW-SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ  159 (615)
T ss_pred             eechhhhh-----------------hHHHHhccCcch--HHHHhh-ccCCccccccccccceEEEeccchhhhhhhcccc
Confidence            99999875                 222222 22221  112455 8889999999999999999998877665555588


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          195 HVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      .++++++|.+.+. .+.++.|..+.+-..
T Consensus       160 RRgtq~av~lEd~-vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  160 RRGTQIAVTLEDY-VILCDCDNTLSVTTQ  187 (615)
T ss_pred             cceeEEEecccce-eeecCcHHHHHHhhh
Confidence            8999999999764 455565666555443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.43  E-value=2  Score=32.29  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=25.5

Q ss_pred             cceEEEEEcCCC-----C-eEEEEeCCCcEEEecCCCC
Q 021160          195 HVVNQLEPHPHI-----P-MFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       195 ~~v~~~~~~p~~-----~-~l~s~~~d~~i~iwd~~~~  226 (316)
                      ..+..++|||.|     + +||....++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            478899999954     2 4788889999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.19  E-value=14  Score=35.27  Aligned_cols=178  Identities=11%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec----------CCcEEEEeCcCCcccCCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~----------dg~v~~wd~~~~~~~~~~   73 (316)
                      .++++|-++.+   ++..+.+.+..    --..|.++.|..+...++++|+.          .|.|.++.+...+     
T Consensus       751 ~l~vlD~nTf~---vl~~hef~~~E----~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-----  818 (1096)
T KOG1897|consen  751 FLRVLDQNTFE---VLSSHEFERNE----TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-----  818 (1096)
T ss_pred             EEEEecCCcee---EEeeccccccc----eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-----
Confidence            46666665543   33333333211    02235556688774478888753          4667777776522     


Q ss_pred             CCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           74 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                          .++......    -.+.+.++..- +|+++ ++-...|++|++.+.                +.++.-..+...  
T Consensus       819 ----~L~~v~e~~----v~Gav~aL~~f-ngkll-A~In~~vrLye~t~~----------------~eLr~e~~~~~~--  870 (1096)
T KOG1897|consen  819 ----SLELVAETV----VKGAVYALVEF-NGKLL-AGINQSVRLYEWTTE----------------RELRIECNISNP--  870 (1096)
T ss_pred             ----ceeeeeeee----eccceeehhhh-CCeEE-EecCcEEEEEEcccc----------------ceehhhhcccCC--
Confidence                111111111    13344444221 34444 445678999999876                566666666665  


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEecc--CCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      +..+.. ...+..++.|.--+.+.+...+  .|....... -+..+++++.+-.+.. ++.+-.+|.+.+-..
T Consensus       871 ~~aL~l-~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  871 IIALDL-QVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRK  941 (1096)
T ss_pred             eEEEEE-EecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEEEEEe
Confidence            666666 6789999999988877765544  444444433 2556777777765544 445556777776543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.86  E-value=8.9  Score=32.29  Aligned_cols=110  Identities=15%  Similarity=0.267  Sum_probs=56.5

Q ss_pred             EEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC----CcEEEEe
Q 021160           95 ITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----DEYVMSG  170 (316)
Q Consensus        95 i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~  170 (316)
                      -+.|+|.|+|+++++-..|.|++++..... .       ..+....  .......  .....+++ +|+    +.+.++.
T Consensus         4 P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~-~-------~~v~~~~--~v~~~~~--~gllgia~-~p~f~~n~~lYv~~   70 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAERSGRIWVVDKDGSL-K-------TPVADLP--EVFADGE--RGLLGIAF-HPDFASNGYLYVYY   70 (331)
T ss_dssp             EEEEEEETTSCEEEEETTTEEEEEETTTEE-C-------EEEEE-T--TTBTSTT--BSEEEEEE--TTCCCC-EEEEEE
T ss_pred             ceEEEEeCCCcEEEEeCCceEEEEeCCCcC-c-------ceecccc--ccccccc--CCccccee-ccccCCCCEEEEEE
Confidence            468999999999999889999999933220 0       0000000  1111122  33889998 663    3333333


Q ss_pred             ccC--------CeEEEEeccCC-------e-eEEEeec---CccceEEEEEcCCCCeEEEEeCCCc
Q 021160          171 SDC--------GHLFIWKKKGG-------K-LVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKT  217 (316)
Q Consensus       171 ~~d--------g~v~~wd~~~~-------~-~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~  217 (316)
                      +..        ..|.-|....+       + .+..+..   .......|+|.|++.+.++.+..+.
T Consensus        71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            321        23444444433       1 1122222   2234566999999977666654443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02790 Kelch-like protein; Provisional

Probab=90.33  E-value=12  Score=33.39  Aligned_cols=60  Identities=8%  Similarity=0.060  Sum_probs=31.7

Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~  227 (316)
                      ++...+.|   |.+.+||..+.+-.  ..+........ ++. -++++.+.||.+     ..+..||+.+.+
T Consensus       407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            45556666   35678888765432  22222122222 222 256777777754     346667766654

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.26  E-value=17  Score=34.57  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=73.0

Q ss_pred             ccEEEEEEcc-----CC--CeEEEec-----CCcEEEEEcCCCCCCCCccCCccc--------cccCCCcceeeCCcCCc
Q 021160           93 IHITGLAYSN-----TS--ELLISYN-----DELVYLFEKNMGLGPSPLSLSPED--------LQKREEPQVYSGHRNSQ  152 (316)
Q Consensus        93 ~~i~~~~~~~-----~~--~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  152 (316)
                      ..++.+.|-+     +.  .++++..     ...|..|.++....+.+..+..-.        .++....+....-.-.+
T Consensus       181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~  260 (753)
T PF11635_consen  181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK  260 (753)
T ss_pred             ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence            3566777765     22  2454432     346999999876422222221111        11111111222222223


Q ss_pred             eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe----e-----------c----CccceEEEEEcCCCCeEEEEe
Q 021160          153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V-----------G----DRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~----~-----------~----~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      .|.++.. ..-+.+++....||+|.++|..+-+.+...    .           |    .-..+..++|||++-.++.-.
T Consensus       261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            4778876 677889999999999999997765443322    0           0    111344588999998888888


Q ss_pred             CCCcEE
Q 021160          214 IEKTVK  219 (316)
Q Consensus       214 ~d~~i~  219 (316)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.26  E-value=18  Score=34.91  Aligned_cols=106  Identities=8%  Similarity=0.039  Sum_probs=62.4

Q ss_pred             EEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEE
Q 021160           98 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF  177 (316)
Q Consensus        98 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~  177 (316)
                      .+..|-..++.++-...+++||+...                ++++......-+..|..+.+   .+..++.|...-.+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K----------------~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~  999 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKK----------------KLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVH  999 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChH----------------HHHhhhhhccCceEEEEEee---cceEEEEeeccceEE
Confidence            34566666777788899999999776                44444333222344777776   467788887655555


Q ss_pred             EEe--ccCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          178 IWK--KKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       178 ~wd--~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      ++-  ....+++ .+...  ...|+++.+ -|...+|.+..=|.+.+-.+.
T Consensus      1000 ~~~y~~~~n~l~-~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1000 FVRYRREDNQLI-VFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEEEecCCCeEE-EEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence            444  4444443 33321  234555544 344557777666666665544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.49  E-value=19  Score=33.94  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCcc---CCccccccCCCcc-eeeCCcCCceeeeEEEecCC---Cc
Q 021160           93 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS---LSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPN---DE  165 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~---~~  165 (316)
                      -.|..+.++|+|.+++..+...|.|..+....+.....   -..-...+...-. .+..+ ....|..+.| +|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~-~~~~i~qv~W-hP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSN-SSLEIKQVRW-HPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCC-CCceEEEEEE-cCCCCCCC
Confidence            46889999999998888666777777775431111000   0000000000000 11111 1134899999 554   68


Q ss_pred             EEEEeccCCeEEEEeccC
Q 021160          166 YVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       166 ~l~~~~~dg~v~~wd~~~  183 (316)
                      .|+.-+.|+++++||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            899999999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.49  E-value=9.9  Score=30.71  Aligned_cols=197  Identities=8%  Similarity=0.007  Sum_probs=111.9

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  114 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  114 (316)
                      ..-..++-.|+| ....++...+.|=-.|..+++..               ....+....-..+..-|+|..-++-...-
T Consensus        62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga~Phgiv~gpdg~~Witd~~~a  125 (353)
T COG4257          62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGASPHGIVVGPDGSAWITDTGLA  125 (353)
T ss_pred             CCccccccCCCC-ceEEecCccccceecCCCCCceE---------------EEecCCCCCCceEEECCCCCeeEecCcce
Confidence            345677778888 67777777777777788777621               11123334445677788887555522225


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      |.-.|-++.                 .+..|.   .|.. ..+....| .+.|.+..++.. |.---.|..+ ..+..+.
T Consensus       126 I~R~dpkt~-----------------evt~f~lp~~~a~-~nlet~vf-D~~G~lWFt~q~-G~yGrLdPa~-~~i~vfp  184 (353)
T COG4257         126 IGRLDPKTL-----------------EVTRFPLPLEHAD-ANLETAVF-DPWGNLWFTGQI-GAYGRLDPAR-NVISVFP  184 (353)
T ss_pred             eEEecCccc-----------------ceEEeecccccCC-Ccccceee-CCCccEEEeecc-ccceecCccc-Cceeeec
Confidence            555555443                 122221   1211 23677777 899998888763 2211222221 2234443


Q ss_pred             cC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC--CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          192 GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       192 ~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .. ......|+..|+|..-.+.-.+..|-.-|...+.-..+.  .....-....|..+-++.-++....+.++.+|-...
T Consensus       185 aPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         185 APQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             cCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence            22 235577889999988666555667777777666432222  111222334445556777777777777777775554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.23  E-value=11  Score=31.10  Aligned_cols=103  Identities=8%  Similarity=0.084  Sum_probs=53.0

Q ss_pred             eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC-CCCC----
Q 021160          153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP-MPTD----  227 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~-~~~~----  227 (316)
                      .+..+.. +++|.+++++.......-|+.-...-...-..-..+|.+|.|.|++.+.+.+ ..|.|+.=+. ....    
T Consensus       146 s~~~~~r-~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  146 SINDITR-SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             -EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred             eeEeEEE-CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence            3777776 8999999888776666677754221111222235789999999998875544 6788887772 2111    


Q ss_pred             -CCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          228 -FPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                       +..+....-.++.++ +.+++...+++....
T Consensus       224 ~~~~~~~~~~~~ld~a-~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLA-YRPPNEIWAVGGSGT  254 (302)
T ss_dssp             -B-TTSS--S-EEEEE-ESSSS-EEEEESTT-
T ss_pred             ccCCcccCceeeEEEE-ecCCCCEEEEeCCcc
Confidence             112222223355666 445555666555543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.17  E-value=17  Score=32.85  Aligned_cols=71  Identities=10%  Similarity=0.081  Sum_probs=43.9

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--cCCcE
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV  115 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i  115 (316)
                      ..+.|||.. ..|++-.....-.++++.....             ..+.- -...+.|.|..|.+||+.|+.+  +.=.-
T Consensus       116 QGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s-------------rVkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHS  180 (671)
T PF15390_consen  116 QGCVWHPKK-AILTVLTARDVSVLPSVHCDSS-------------RVKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHS  180 (671)
T ss_pred             CcccccCCC-ceEEEEecCceeEeeeeeeCCc-------------eEEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEE
Confidence            467899987 5666655444445666664331             11111 1335789999999999866654  44456


Q ss_pred             EEEEcCCC
Q 021160          116 YLFEKNMG  123 (316)
Q Consensus       116 ~iwd~~~~  123 (316)
                      ++||-...
T Consensus       181 yiWd~~qK  188 (671)
T PF15390_consen  181 YIWDSAQK  188 (671)
T ss_pred             EEecCchh
Confidence            78886544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.93  E-value=2.3  Score=22.76  Aligned_cols=40  Identities=5%  Similarity=0.032  Sum_probs=26.9

Q ss_pred             CCCcEEEEec-cCCeEEEEeccCCeeEEEeecCccceEEEEE
Q 021160          162 PNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP  202 (316)
Q Consensus       162 ~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~  202 (316)
                      |++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            4566665544 5889999999999888877653 23344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.87  E-value=15  Score=31.88  Aligned_cols=112  Identities=14%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCC--CcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160           92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      ...+..+.+.+++.+++.+.+|.+..= ...+.             +..  ......-......+.++.| .+++..+++
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~-------------~~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a~  344 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGL-------------TEEDFDFEEADIKSRGFGILDVGY-RSKKEAWAA  344 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceEEEe-cCCCC-------------cccccceeecccCCCCcceEEEEE-cCCCcEEEE
Confidence            456889999999998888877776543 32220             000  1111111111123888888 667666555


Q ss_pred             eccCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          170 GSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       170 ~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                      | ..|.+... ...|+.-....   .-....+.+.|.++++.+++| .+|.|.-|
T Consensus       345 G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        345 G-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             E-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            5 56766544 34455433332   223467889988877777666 47776654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.65  E-value=8.4  Score=35.90  Aligned_cols=69  Identities=12%  Similarity=0.159  Sum_probs=41.4

Q ss_pred             eEEEecCCCcEEEEeccCC-----eEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          156 GVNFFGPNDEYVMSGSDCG-----HLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg-----~v~~wd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .++| -|.|..+++-..||     .|.++..+   .|+.-... +....+..++|+-....++.+ ....+++|-...-.
T Consensus       251 ~LSW-kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh  327 (1243)
T COG5290         251 QLSW-KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH  327 (1243)
T ss_pred             cccc-ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence            4677 89999999876544     35566533   23321111 223456677887665555443 45689999876643

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.41  E-value=21  Score=33.14  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160           94 HITGLAYSNTSELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  123 (316)
                      .+..+.|+.+.++++...+|++++|++-..
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecchh
Confidence            788999999988998899999999998654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.14  E-value=12  Score=30.07  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=65.8

Q ss_pred             cEEEEEEccCCCeEEE-e-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160           94 HITGLAYSNTSELLIS-Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      .+.+.++++++..++. . .++  .++++.....                 ....+.+.    .+..-.| ++++...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v   82 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV   82 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence            6789999999986655 3 233  4555544332                 22222322    2777788 888887777


Q ss_pred             eccCCeEEEEe-ccCCeeEE-Eeec--CccceEEEEEcCCCCeEEEEe---CCCcEEEecC
Q 021160          170 GSDCGHLFIWK-KKGGKLVR-LMVG--DRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP  223 (316)
Q Consensus       170 ~~~dg~v~~wd-~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~  223 (316)
                      ...+...+++. ..+++... .+..  -...|..+.++|||..+|...   .++.|.+--+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen   83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            77677767664 33333221 1211  112899999999999866554   3466776654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.93  E-value=2.3  Score=37.19  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  123 (316)
                      -++|+|+..|.|++||.-..               ..++.+.+....|..+..+.+|+++++.....+.+-|+.-.
T Consensus       574 GyIa~as~kGDirLyDRig~---------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik  634 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGK---------------RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK  634 (776)
T ss_pred             ceEEEecCCCceeeehhhcc---------------hhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence            49999999999999996433               34444466678899999999999877777788888888644

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.61  E-value=16  Score=31.89  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecC
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  112 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  112 (316)
                      -+++|.++.|++++ +.+|+--.+..|.+++....+...           ............|....|+..-. +|--.+
T Consensus        65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l-----------~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~  131 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQL-----------EYTQECKTKNANILGFCWTSSTE-IAFITD  131 (657)
T ss_pred             CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhh-----------HHHHHhccCcceeEEEEEecCee-EEEEec
Confidence            46799999999999 899999999999999984332100           00011122345688888887643 333334


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      .-+-+|......               ..++..+.+...  |.=..| .++...++.
T Consensus       132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~LL  170 (657)
T KOG2377|consen  132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVILL  170 (657)
T ss_pred             CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEee
Confidence            445555554331               244555555544  555555 555554433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.19  E-value=12  Score=28.92  Aligned_cols=57  Identities=12%  Similarity=0.202  Sum_probs=34.0

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee------------cCccceEEEEEcCCCCe-EEEE
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------------GDRHVVNQLEPHPHIPM-FATC  212 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~-l~s~  212 (316)
                      ++.+.|  -+|...|-.=.+..|...+.++|+.+..+.            .|....+.+++.|++.. ++||
T Consensus       178 LNELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         178 LNELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            445555  355555544455566666777777655432            23446678999998744 5555

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.67  E-value=17  Score=34.49  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=24.2

Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      .+..++.++.|+.+.-.|.++|+.+..+.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg  287 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFG  287 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEec
Confidence            34578889999999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.56  E-value=27  Score=34.71  Aligned_cols=159  Identities=10%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEE--------ECCCCCcEEEEEecCCcEEEEeCcCCcccCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV--------IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~--------~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~   73 (316)
                      +..+.+|+..+....+.+...           ...|..+.        |.|.=..+|+.++ --.|.++-+.-.+.... 
T Consensus        98 Dn~L~lWny~~~~e~~~~d~~-----------shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~-  164 (1311)
T KOG1900|consen   98 DNNLFLWNYESDNELAEYDGL-----------SHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGE-  164 (1311)
T ss_pred             CCeEEEEEcCCCCccccccch-----------hhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCc-
Confidence            567899999886544443321           22344444        2333213344443 34566666543321100 


Q ss_pred             CCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccc---------cccCCCcce
Q 021160           74 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED---------LQKREEPQV  144 (316)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~  144 (316)
                           ...+...-.+......|.++....+|+++.+|.||.|+-.-.+...+=.....+..+         +++  ..+.
T Consensus       165 -----~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs--~~~~  237 (1311)
T KOG1900|consen  165 -----LSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS--LLSV  237 (1311)
T ss_pred             -----ccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh--hhcC
Confidence                 000000000012256789999889999999998885542222221100000000000         111  1111


Q ss_pred             eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC
Q 021160          145 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~  183 (316)
                      ...+..  +|..+.. ...-+.+.+-++.|+|..|++..
T Consensus       238 ~~~~~d--pI~qi~I-D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  238 PGSSKD--PIRQITI-DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCC--cceeeEe-ccccceeeeeccCceEEEEEccC
Confidence            113333  4999998 77888999999999999999875

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.42  E-value=23  Score=35.09  Aligned_cols=71  Identities=11%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             CceeeeEEEecCCCcEEEEeccCCeEEEEecc----CC---e-e----------------EEEee-cCccceEEEEEcCC
Q 021160          151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK----GG---K-L----------------VRLMV-GDRHVVNQLEPHPH  205 (316)
Q Consensus       151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~----~~---~-~----------------~~~~~-~~~~~v~~~~~~p~  205 (316)
                      +..|.++.. ..+|+.+++|- ||.  +|.+.    .+   + +                +..++ .+..+|..++....
T Consensus       178 g~~V~~I~~-t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  178 GVSVNCITY-TENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             CceEEEEEe-ccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            345889986 78888777665 443  44422    11   1 1                11223 45679999999877


Q ss_pred             CCeEEEEeCCCcEEEecCCC
Q 021160          206 IPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       206 ~~~l~s~~~d~~i~iwd~~~  225 (316)
                      -+.+.+-++.++|.+|++..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            77888999999999999876

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.37  E-value=28  Score=32.39  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP  229 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~  229 (316)
                      +..+.. +|+.++|+-=...|.+.+-+....+....+.. .......++|.-+.  -++.+.+..+.+....+..+.
T Consensus       219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~  292 (829)
T KOG2280|consen  219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQ  292 (829)
T ss_pred             EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCccc
Confidence            555666 88999999999999999998887776666542 12333467776554  223334445555555444433

>PRK10115 protease 2; Provisional

Probab=86.24  E-value=30  Score=32.59  Aligned_cols=195  Identities=11%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             cceEEEEECCCCCcEEEEEe-----cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEE
Q 021160           35 IRLNAIVIDPRNPNYFAVGG-----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI  108 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~-----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  108 (316)
                      -.+..+.++|++ ++|+.+.     ....|++.|+.+++.+              ...+.+-.   ..++|.++++ ++.
T Consensus       127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l--------------~~~i~~~~---~~~~w~~D~~~~~y  188 (686)
T PRK10115        127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWY--------------PELLDNVE---PSFVWANDSWTFYY  188 (686)
T ss_pred             EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCC--------------CccccCcc---eEEEEeeCCCEEEE
Confidence            457788999999 6776653     2344888888877521              11111111   4589999987 445


Q ss_pred             Eec-C-----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee-eEEEecCCCcEEEEecc---CCeEEE
Q 021160          109 SYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGSD---CGHLFI  178 (316)
Q Consensus       109 s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~---dg~v~~  178 (316)
                      +.. +     ..|+.+++.++..              .....+......  .. .+.. +.++++++..+.   ++.+.+
T Consensus       189 ~~~~~~~~~~~~v~~h~lgt~~~--------------~d~lv~~e~~~~--~~~~~~~-s~d~~~l~i~~~~~~~~~~~l  251 (686)
T PRK10115        189 VRKHPVTLLPYQVWRHTIGTPAS--------------QDELVYEEKDDT--FYVSLHK-TTSKHYVVIHLASATTSEVLL  251 (686)
T ss_pred             EEecCCCCCCCEEEEEECCCChh--------------HCeEEEeeCCCC--EEEEEEE-cCCCCEEEEEEECCccccEEE
Confidence            433 2     3577777766510              112233332222  22 2222 557777665443   457888


Q ss_pred             Eecc--CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEecCC-CCCCCCCCCC-cccceeeeecCCCCcee
Q 021160          179 WKKK--GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPM-PTDFPPLPDN-AEKIMKANKQGREDHSR  251 (316)
Q Consensus       179 wd~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-~--~i~iwd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~  251 (316)
                      ++..  .++....+.........+. +..+.+++....+ .  .|...++. ......+..+ ....+....+. .+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~  329 (686)
T PRK10115        252 LDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLV  329 (686)
T ss_pred             EECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEE
Confidence            8842  3443222322222222332 3333333332221 2  33333444 2222333333 22222222122 44566


Q ss_pred             EEecCCCeEEEEEec
Q 021160          252 ITLTPDVIMHVLRLQ  266 (316)
Q Consensus       252 ~s~~~d~~~~~w~~~  266 (316)
                      ++...++.-+++-+.
T Consensus       330 ~~~~~~g~~~l~~~~  344 (686)
T PRK10115        330 VEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEeCCEEEEEEEc
Confidence            777777776666554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.92  E-value=3.6  Score=37.42  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             CCCcEEEEeccCCeEEEEeccC----CeeEEE-eec---------------------CccceEEEEEcC----CCCeEEE
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKG----GKLVRL-MVG---------------------DRHVVNQLEPHP----HIPMFAT  211 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~----~~~~~~-~~~---------------------~~~~v~~~~~~p----~~~~l~s  211 (316)
                      ++...++.+..||.+.......    +..... ...                     ....+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667788888888888777653    221111 110                     013455667776    6678999


Q ss_pred             EeCCCcEEEecCCCCCC
Q 021160          212 CGIEKTVKLWAPMPTDF  228 (316)
Q Consensus       212 ~~~d~~i~iwd~~~~~~  228 (316)
                      .+.|+++|+||+.+++.
T Consensus       236 l~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EETTSEEEEEETTTTCE
T ss_pred             EeCCCeEEEEECCCCeE
Confidence            99999999999998874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.62  E-value=15  Score=28.51  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           49 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        49 ~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .|+.+...+.|.+|++....+       .+...|       ..-+.|..+.++..|.++++-
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~-------~~~~~F-------~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEEC-------PLLCTF-------STVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCC-------ceeEEE-------cchhheeEEEeccccceEEEE
Confidence            444435667899999984431       112222       123679999999999999984

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.18  E-value=18  Score=28.13  Aligned_cols=103  Identities=10%  Similarity=0.064  Sum_probs=61.2

Q ss_pred             CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CC---eEEE
Q 021160          105 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CG---HLFI  178 (316)
Q Consensus       105 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg---~v~~  178 (316)
                      .++++.....|.+|++....              .++...|..- +  .|..+.+ +..|+++++--.   ..   .+|+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv-~--~V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR~   91 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV-G--RVLQLVY-SEAGDYLVTLEEKNKRSPVDFVRA   91 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCC--------------CceeEEEcch-h--heeEEEe-ccccceEEEEEeecCCccceEEEE
Confidence            35555677889999998431              1344455543 3  3889998 899999998643   22   5565


Q ss_pred             Ee-cc----CCeeEE-EeecC---------------------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          179 WK-KK----GGKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       179 wd-~~----~~~~~~-~~~~~---------------------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      |- .+    ..+++. .+.||                     ...+.+++..|-.--|+.|+ ++++.+|.+...
T Consensus        92 Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   92 YFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            53 11    112222 12222                     23567788888544455555 578899987544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.86  E-value=16  Score=33.32  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=25.0

Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      +..++++.+.|+.+|+||+.+++++...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            6788999999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.84  E-value=22  Score=28.89  Aligned_cols=116  Identities=8%  Similarity=0.026  Sum_probs=74.7

Q ss_pred             cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160           92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      ........|.+.|++-.++..|.---.|....                 .++.|..... ...+.|+. .|+|...++.-
T Consensus       147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~-----------------~i~vfpaPqG-~gpyGi~a-tpdGsvwyasl  207 (353)
T COG4257         147 DANLETAVFDPWGNLWFTGQIGAYGRLDPARN-----------------VISVFPAPQG-GGPYGICA-TPDGSVWYASL  207 (353)
T ss_pred             CCcccceeeCCCccEEEeeccccceecCcccC-----------------ceeeeccCCC-CCCcceEE-CCCCcEEEEec
Confidence            45677888999999777765443223333222                 3444443322 23566777 89999888877


Q ss_pred             cCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          172 DCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .+..|-..|..++.. ..+.   ........+--+|.+..-+|-...+.+..+|.....
T Consensus       208 agnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         208 AGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             cccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            788888888776632 2222   212334456567888887777778889999988766

>PRK13684 Ycf48-like protein; Provisional

Probab=83.72  E-value=26  Score=29.63  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=64.7

Q ss_pred             cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160           92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      ...+..+.+.|++.+++.+..|.+..-.-..+                ......... ....++++.+ .++++.++.+ 
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg-  232 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLA-  232 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCC----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEe-
Confidence            45688899999888888787786654211111                111222211 1134888888 7888877665 


Q ss_pred             cCCeEEEEeccCCeeEEEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          172 DCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      ..|.+++=....|..-.....    -...+.++.+.|++..++. +.+|.+.. ....+
T Consensus       233 ~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G  289 (334)
T PRK13684        233 RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGG  289 (334)
T ss_pred             cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCC
Confidence            457665333444433222111    1235778899998776554 45776654 33433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.39  E-value=43  Score=32.05  Aligned_cols=127  Identities=11%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc--cccc-cC-CCcccEEEEEEccCCCeEEEe
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHL-IG-KNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+...++|+|.....||+-...|...||++....-...    ..+...+  ...+ .. ........+.|.++-..|+.+
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~----~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~  221 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS----SNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC  221 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCC----cceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE
Confidence            35679999998878999999999999999922110000    0000000  0001 01 112455688998888877888


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccC
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~  183 (316)
                      +...+.++|+++.                .....+........|.++.- ++. ..+++.-+ ...|...++..
T Consensus       222 ~r~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  222 NRSKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             cCCceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEe-cCeEEEEEccC
Confidence            8889999999876                22221222222234888876 555 22222222 25677777665

These proteins are found in fungi.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.34  E-value=24  Score=31.43  Aligned_cols=88  Identities=9%  Similarity=0.150  Sum_probs=51.8

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccc-----ccCCCcccEEEEEEccCC----C
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH-----LIGKNNIHITGLAYSNTS----E  105 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~----~  105 (316)
                      -.|..+..++.| ..++-.+.+|.+.++=.+.......+....++-......     ......-.+..++|+|+.    .
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            357888899999 778777888876665433221111122222221111100     111123356788999976    3


Q ss_pred             eEEEecCCcEEEEEcCCC
Q 021160          106 LLISYNDELVYLFEKNMG  123 (316)
Q Consensus       106 ~l~s~~d~~i~iwd~~~~  123 (316)
                      +++-.+|..|++||+...
T Consensus       183 L~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEEecCcEEEEEecCCc
Confidence            566689999999999765

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.92  E-value=5.2  Score=21.08  Aligned_cols=29  Identities=3%  Similarity=-0.099  Sum_probs=18.8

Q ss_pred             CccceEEEEEcCCCCeEEEEe-CC--CcEEEe
Q 021160          193 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW  221 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~-~d--~~i~iw  221 (316)
                      ....-....|+|||+.|+-.+ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999999976554 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.70  E-value=16  Score=29.93  Aligned_cols=62  Identities=10%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe------CCCcEEEecCCCCCCCCCCC
Q 021160          172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG------IEKTVKLWAPMPTDFPPLPD  233 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~  233 (316)
                      ....|++||..+.+-...-.+-.+.|+++.|..+.+.++.|.      ....+..||+.......+.+
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~   81 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG   81 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence            355799999887775555455568899999986666677664      35578899998887555544

>PRK10115 protease 2; Provisional

Probab=82.47  E-value=44  Score=31.50  Aligned_cols=109  Identities=6%  Similarity=-0.057  Sum_probs=62.5

Q ss_pred             ccEEEEEEccCCCeEEEec--CC----cEEEEEcCCCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCCc
Q 021160           93 IHITGLAYSNTSELLISYN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDE  165 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  165 (316)
                      -.+..+.++|+|++|+.+.  +|    .|++.|+.++                ..+ ..+.+ .    -..++| .++++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg----------------~~l~~~i~~-~----~~~~~w-~~D~~  184 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG----------------NWYPELLDN-V----EPSFVW-ANDSW  184 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC----------------CCCCccccC-c----ceEEEE-eeCCC
Confidence            4577789999999776643  22    3888888766                221 12221 1    134788 88887


Q ss_pred             EEEEeccC------CeEEEEeccCC--eeEEEeecCccceE-EEEEcCCCCeEEEEe---CCCcEEEecC
Q 021160          166 YVMSGSDC------GHLFIWKKKGG--KLVRLMVGDRHVVN-QLEPHPHIPMFATCG---IEKTVKLWAP  223 (316)
Q Consensus       166 ~l~~~~~d------g~v~~wd~~~~--~~~~~~~~~~~~v~-~~~~~p~~~~l~s~~---~d~~i~iwd~  223 (316)
                      .|+....+      ..|+.+++.++  +-...+........ .+..+.++++++..+   .++.+.+++.
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            66555432      36788888877  33333433222222 333344777754333   3457888884

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=82.20  E-value=4.4  Score=19.71  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEe
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYD   63 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd   63 (316)
                      .|.+++..+   .+++++.+.+.+|+|.
T Consensus         3 ~i~aia~g~---~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGD---SWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccC---CEEEEEeCCCeEEecC
Confidence            577888865   6899999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=82.17  E-value=27  Score=28.77  Aligned_cols=197  Identities=17%  Similarity=0.210  Sum_probs=91.3

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC----cE-EEEEecCCcEEEEeCcCCcccCCCC---C
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP----NY-FAVGGSDEYARVYDIRKCHWYSPIS---S   75 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~----~~-l~~g~~dg~v~~wd~~~~~~~~~~~---~   75 (316)
                      .|-+||+++++..+.+.+.....  .   ..+.++.+.+.....    .+ +++=+..+.|.++|+.+++......   .
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~--~---~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~  109 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIA--P---PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFS  109 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCT
T ss_pred             EEEEEECCCCcEEEEEECChHHc--c---cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcc
Confidence            57789999988766666643221  0   246788888877431    23 3333455689999999876332211   1


Q ss_pred             CCC-ceecccccccCCCcccEEEEEEcc---CCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           76 DTP-VDTFCPRHLIGKNNIHITGLAYSN---TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        76 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                      ..| ...+......-.....+..++.+|   +++.|.-.  ....++--....-..+   ...... .-...++.+-...
T Consensus       110 ~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~-~~~~~v~~lG~k~  185 (287)
T PF03022_consen  110 PDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQ-ALASQVQDLGDKG  185 (287)
T ss_dssp             TS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH--HHHT-EEEEE--
T ss_pred             eeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccc-cccccceeccccC
Confidence            111 011110000001123366667665   44544332  2333332222110000   000000 0001112221111


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---eeEEEee-c-C-ccceEEEEEcC--CCCeEEEE
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVRLMV-G-D-RHVVNQLEPHP--HIPMFATC  212 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~---~~~~~~~-~-~-~~~v~~~~~~p--~~~~l~s~  212 (316)
                      ..  ...+++ +++|.+.++--..+.|..|+....   +....+. . . -..+..+.+.+  ++.+.+..
T Consensus       186 ~~--s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  186 SQ--SDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -S--ECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CC--CceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            12  455666 789999989899999999998751   1122222 1 1 24677888887  65554433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.90  E-value=46  Score=31.24  Aligned_cols=162  Identities=10%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             CCeEEEecCCcEEEEEcCCCCCCCCc--cCCccccccC--CCcceeeCCcCCceeeeEEEe-cCCCcEEEEeccCCeEEE
Q 021160          104 SELLISYNDELVYLFEKNMGLGPSPL--SLSPEDLQKR--EEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSDCGHLFI  178 (316)
Q Consensus       104 ~~~l~s~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~v~~  178 (316)
                      ..+++.+..+.|.||+.+........  .+...-.+..  .....+.....+..|+.+..- =.....|+.+.+||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            56777777999999998765321100  0000000000  000001100011125444431 134568889999999999


Q ss_pred             EeccC-------C----e---------eEEEeecCccceEEEEEc--CCCCeEEEEeCCCcEEEecCCCC--CCCCCC--
Q 021160          179 WKKKG-------G----K---------LVRLMVGDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMPT--DFPPLP--  232 (316)
Q Consensus       179 wd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--p~~~~l~s~~~d~~i~iwd~~~~--~~~~~~--  232 (316)
                      |..++       .    +         +...+. -...++.++++  ...++||.++....|.||-....  +....+  
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            97531       1    0         111112 22468899998  77888998888888888865542  211111  


Q ss_pred             CCcccceeeeecCC--CCc---eeEEecCCCeEEEEEec
Q 021160          233 DNAEKIMKANKQGR--EDH---SRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       233 ~~~~~~~~~~~~~~--~~~---~~~s~~~d~~~~~w~~~  266 (316)
                      .+..-|-.+.....  ++.   .+++.+-.|.+.+|++.
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            12222323332222  222   77788889999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>smart00564 PQQ beta-propeller repeat

Probab=81.56  E-value=5  Score=20.06  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             cEEEEeccCCeEEEEeccCCeeEEE
Q 021160          165 EYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       165 ~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      ..++.++.+|.+..+|..+|+.+-.
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3677788899999999998887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=80.99  E-value=43  Score=30.39  Aligned_cols=118  Identities=16%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      ..++.++.++.|.-+|..+++.+.......+......    ......-..+++. +++++++..|+.+.-+|..++    
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~----~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG----  140 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV----MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG----  140 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc----cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence            4666677788999999999875433211110000000    0000000112222 345666667999999999888    


Q ss_pred             CccCCccccccCCCcceeeCC--cCCceeeeEEEecC--CCcEEEEec------cCCeEEEEeccCCeeEEEe
Q 021160          128 PLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGP--NDEYVMSGS------DCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~~l~~~~------~dg~v~~wd~~~~~~~~~~  190 (316)
                                  +.+-.....  .....+.+    +|  .+..++.+.      .+|.|.-+|.++|+.+-.+
T Consensus       141 ------------k~~W~~~~~~~~~~~~~ts----sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       141 ------------KVVWSKKNGDYKAGYTITA----APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ------------CEEeecccccccccccccC----CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence                        343332211  10000111    11  123444443      2688999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		4e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-05

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 194
           D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ + G  
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 195 HVVNQLEPHPHIPMFATCGIE--KTVKLW 221
            VV     HP   + A+  +E  KT+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 299 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 221
           + G   VV     HP   + A+  +E  KT+KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 95  ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
           + G+A+S   + + S +D+  V L+ +N  L                  Q  +GH  S +
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 223
Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213
           V+GV  F P+ + + S SD   + +W + G +L++ + G    VN +   P     A+  
Sbjct: 224 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 214 IEKTVKLW 221
            +KTVKLW
Sbjct: 282 DDKTVKLW 289

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 190 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKL 220
           + G   VV     HP   + A+  +E  KT+KL
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKL 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.8
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.49
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.45
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.44
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.43
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.31
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.26
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.26
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.25
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.23
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.12
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.07
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.03
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.97
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.89
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.84
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.83
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.79
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.68
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.65
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.56
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.54
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.5
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.47
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.45
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.37
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.35
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.32
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.27
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.24
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.22
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.17
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.14
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.11
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.05
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.0
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.94
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.92
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.9
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.89
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.77
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.73
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.64
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.61
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.55
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.48
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.34
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.3
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.26
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.22
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.16
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.16
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.88
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.68
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.67
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.58
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.47
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.44
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.09
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.06
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.05
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.04
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.8
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.78
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.78
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.83
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.25
3ott_A	758	Two-component system sensor histidine kinase; beta	92.39
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.45
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.25
3ott_A	758	Two-component system sensor histidine kinase; beta	91.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.7
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.4
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.06
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.84
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.35
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.24
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.62

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-39  Score=268.57  Aligned_cols=252  Identities=15%  Similarity=0.212  Sum_probs=214.7

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|.|+|||++..+.......         .||...|.+++|+|++ .++++++.|+.|++||+.+++            
T Consensus        56 ~D~~v~vW~~~~~~~~~~~~l---------~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~------------  113 (321)
T 3ow8_A           56 LDDLVKVWKWRDERLDLQWSL---------EGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGK------------  113 (321)
T ss_dssp             TTSCEEEEEEETTEEEEEEEE---------CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE------------
T ss_pred             CCCCEEEEECCCCCeeeeeee---------ccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCC------------
Confidence            368999999987654322222         2689999999999998 899999999999999999886            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +...+ ..|...+.+++|+|++++|+++ .|+.|++|+++.+                +....+..+...  +.+++|
T Consensus       114 --~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----------------~~~~~~~~~~~~--v~~~~~  172 (321)
T 3ow8_A          114 --QIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----------------KKEYSLDTRGKF--ILSIAY  172 (321)
T ss_dssp             --EEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----------------SEEEEEECSSSC--EEEEEE
T ss_pred             --EEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----------------ceeEEecCCCce--EEEEEE
Confidence              23333 5567788899999999988885 7999999999887                566777777755  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                       +|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||++... ...+.+|...+
T Consensus       173 -spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v  251 (321)
T 3ow8_A          173 -SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV  251 (321)
T ss_dssp             -CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             -CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce
Confidence             9999999999999999999999999999999999999999999999999999999999999998877 66777888888


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEec
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      ..+. +++++.++++++.|+.+++||+.++...         ++. .+.+++..+.+...++.|.+||.
T Consensus       252 ~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          252 LNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            7776 7889999999999999999998765322         222 67788888888888999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=269.59  Aligned_cols=228  Identities=12%  Similarity=0.103  Sum_probs=186.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+.........       .+|...|++++|+|++ ++|++|+.|++|++||+++++             
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~-------~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~-------------  160 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCK-------YEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQV-------------  160 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEE-------ECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-------------
T ss_pred             CCEEEEEeccCCCceeEeeccc-------cCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc-------------
Confidence            6899999999887655544321       1489999999999999 899999999999999999887             


Q ss_pred             cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       +...+ .+|...|.+++|+|++. +|++ +.|++|++||++++                +....+..+.....+.+++|
T Consensus       161 -~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~  222 (344)
T 4gqb_B          161 -VLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP----------------KPASQIGCSAPGYLPTSLAW  222 (344)
T ss_dssp             -EEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS----------------SCEEECC----CCCEEEEEE
T ss_pred             -EEEEE-cCcCCceEEEEecCCCCCceeeecccccccccccccc----------------ceeeeeecceeeccceeeee
Confidence             33333 78999999999999985 6777 47999999999987                55555543333234899999


Q ss_pred             ecC-CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCCCCCCCCCccc
Q 021160          160 FGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEK  237 (316)
Q Consensus       160 ~~~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  237 (316)
                       +| ++.++++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|+|||++.+++..+.+|...
T Consensus       223 -~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~  301 (344)
T 4gqb_B          223 -HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDF  301 (344)
T ss_dssp             -CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSC
T ss_pred             -cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCC
Confidence             55 67789999999999999999999999999999999999999998 5799999999999999999887778889999


Q ss_pred             ceeeeecCCCC-ceeEEecCCCeEEEEEecccCc
Q 021160          238 IMKANKQGRED-HSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       238 ~~~~~~~~~~~-~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      |..++ |++++ .++++++.|+.|++|++.++..
T Consensus       302 V~~v~-~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          302 VRDAT-WSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEE-ECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEEE-EeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            87777 67765 4677999999999999987643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-38  Score=272.61  Aligned_cols=249  Identities=14%  Similarity=0.206  Sum_probs=214.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+.           +|...|.+++|+|++ .+|++|+.|++|++||+.+++             
T Consensus       129 Dg~i~vwd~~~~~~~~~l~-----------~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~-------------  183 (410)
T 1vyh_C          129 DATIKVWDYETGDFERTLK-----------GHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFE-------------  183 (410)
T ss_dssp             SSCEEEEETTTCCCCEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSC-------------
T ss_pred             CCeEEEEECCCCcEEEEEe-----------ccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-------------
Confidence            6899999998877655443           478899999999998 899999999999999998776             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +...+ .+|...|.+++|+|++.+|+++ .|++|++||++++                ..+..+.+|...  +.++.+ 
T Consensus       184 -~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-  242 (410)
T 1vyh_C          184 -CIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----------------YCVKTFTGHREW--VRMVRP-  242 (410)
T ss_dssp             -EEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -eeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEEeCCCcc--EEEEEE-
Confidence             33333 7899999999999999988885 7999999999988                678889999876  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC--------------------CCeEEEEeCCCcEEE
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH--------------------IPMFATCGIEKTVKL  220 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~l~s~~~d~~i~i  220 (316)
                      ++++.++++|+.|+.|++||+.++++...+.+|...|.+++|+|+                    +++|++|+.|+.|++
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            999999999999999999999999999999999999999999996                    668999999999999


Q ss_pred             ecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcce---------eE-EeecccccccccCCC
Q 021160          221 WAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA---------YR-ERRYNAADFESDEEE  289 (316)
Q Consensus       221 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~---------~~-~~~~~~~~~~~~~~~  289 (316)
                      ||++++. +..+.+|...+..+. +++++.++++++.|+.|++||+.+++...         .. .+.|+...++++..+
T Consensus       323 wd~~~~~~~~~~~~h~~~v~~v~-~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          323 WDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEE-ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             EECCCCceEEEEECCCCcEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            9999876 667778888876666 78899999999999999999997653321         11 567778888888888


Q ss_pred             CeEEEEec
Q 021160          290 GETYLLGF  297 (316)
Q Consensus       290 ~~v~~~~~  297 (316)
                      +.|.+|+.
T Consensus       402 ~~i~vW~~  409 (410)
T 1vyh_C          402 QTVKVWEC  409 (410)
T ss_dssp             SEEEEEC-
T ss_pred             CcEEEEeC
Confidence            88888875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.6e-37  Score=257.81  Aligned_cols=252  Identities=13%  Similarity=0.186  Sum_probs=205.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+..           |...|.+++|+|++ .++++|+.|+.+++|++.+.+..        .  
T Consensus        76 Dg~v~iWd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~--------~--  133 (340)
T 1got_B           76 DGKLIIWDSYTTNKVHAIPL-----------RSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGN--------V--  133 (340)
T ss_dssp             TTEEEEEETTTCCEEEEEEC-----------SSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBS--------C--
T ss_pred             CCcEEEEECCCCCcceEeec-----------CCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCc--------c--
Confidence            68999999988766544443           67889999999999 89999999999999999865310        0  


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                       .......+|...|.++.|++++.+++++.|++|++||+.++                .....+.+|...  |.+++| +
T Consensus       134 -~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~  193 (340)
T 1got_B          134 -RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----------------QQTTTFTGHTGD--VMSLSL-A  193 (340)
T ss_dssp             -EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-C
T ss_pred             -eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC----------------cEEEEEcCCCCc--eEEEEE-C
Confidence             11122267899999999999887666678999999999887                677888889876  999999 9


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC--CCcccc
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP--DNAEKI  238 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--~~~~~~  238 (316)
                      |++.++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++..+ +..+.  .+...+
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            999999999999999999999999999999999999999999999999999999999999998765 22222  222344


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEe
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                      ..+. +++++.++++++.|+.+++||+.+....         +.. .+.|++..++++..++.|.+|+
T Consensus       274 ~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          274 TSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEE-ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEE-ECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            4444 8899999999999999999998765332         111 5667777777777777777774

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=257.26  Aligned_cols=218  Identities=17%  Similarity=0.310  Sum_probs=192.7

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|.|++||+.+.+....+..           |...+.+++|+|++ ++|++|+.|+.|++|++++++            
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~~-----------~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~------------  155 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSIDA-----------GPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGK------------  155 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-----------CTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCS------------
T ss_pred             CCCcEEEEECCCCCEEEEEeC-----------CCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCc------------
Confidence            368999999988766555443           56678999999999 899999999999999999876            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ....+ ..|...+.+++|+|++++|+++ .|+.|++||++++                +.+..+.+|...  |.+++|
T Consensus       156 --~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----------------~~~~~~~~h~~~--v~~l~~  214 (321)
T 3ow8_A          156 --KEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG----------------KLLHTLEGHAMP--IRSLTF  214 (321)
T ss_dssp             --EEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--CCEEEE
T ss_pred             --eeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----------------cEEEEEcccCCc--eeEEEE
Confidence              22222 5677889999999999988885 7999999999887                677888888866  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                       +|++++|++|+.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||+.+++ +..+.+|...+
T Consensus       215 -spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v  293 (321)
T 3ow8_A          215 -SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV  293 (321)
T ss_dssp             -CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             -cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE
Confidence             9999999999999999999999999999999999999999999999999999999999999999877 66777888888


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ..+. +++++..+++++.|+.|++||.
T Consensus       294 ~~v~-~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          294 WGVK-YNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEE-ECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEE-ECCCCCEEEEEeCCCeEEEEeC
Confidence            7776 7889999999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-36  Score=252.10  Aligned_cols=254  Identities=13%  Similarity=0.139  Sum_probs=205.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.......-.....      +.+|...|.+++|+|++ .+|++|+.|++|++||+.+++             
T Consensus        39 D~~v~~W~~~~~~~~~~~~~~~------~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~-------------   98 (319)
T 3frx_A           39 DKTLISWKLTGDDQKFGVPVRS------FKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGE-------------   98 (319)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE-------------
T ss_pred             CccEEEecCCCCCccccccceE------EeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCC-------------
Confidence            6899999997644321111111      12589999999999999 899999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +...+ .+|...|.+++|+|++.+++++ .|++|++||++..                 .+..+.+|...  +.+++| 
T Consensus        99 -~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-----------------~~~~~~~h~~~--v~~~~~-  156 (319)
T 3frx_A           99 -TYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-----------------CLATLLGHNDW--VSQVRV-  156 (319)
T ss_dssp             -EEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-----------------EEEEECCCSSC--EEEEEE-
T ss_pred             -eeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------eEEEEeccCCc--EEEEEE-
Confidence             23333 6899999999999999988885 7999999999753                 66778888866  999998 


Q ss_pred             cCC------CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC
Q 021160          161 GPN------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD  233 (316)
Q Consensus       161 ~~~------~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~  233 (316)
                      .|.      +.++++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|+.|++||+..++ +..+. 
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-  235 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-  235 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-
Confidence            664      4589999999999999999999999999999999999999999999999999999999999876 44443 


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEecccCc-----------------ce-eEEeecccccccccCCCCeEEEE
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT-----------------LA-YRERRYNAADFESDEEEGETYLL  295 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~v~~~  295 (316)
                      +...+..++ +++++.++++++.+ .+++|++.....                 .+ ...++|++..+.++..++.|.+|
T Consensus       236 ~~~~v~~~~-~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          236 AQDEVFSLA-FSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             CCSCEEEEE-ECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEE-EcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence            334565555 88888888877755 589998764311                 11 23788999999999999999999


Q ss_pred             eccCC
Q 021160          296 GFSDS  300 (316)
Q Consensus       296 ~~~~~  300 (316)
                      ++..+
T Consensus       314 d~~t~  318 (319)
T 3frx_A          314 QVMTA  318 (319)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            98654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.1e-37  Score=251.72  Aligned_cols=235  Identities=17%  Similarity=0.232  Sum_probs=195.8

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +|...|++++|+|++ .+|++|+.||.|++||+.+++              ....+ ..|..+|.+++|+|++++|+++ 
T Consensus        11 ~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~--------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQV--------------EVRSI-QVTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             EECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             CCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCc--------------eeEEe-eccCCcEEEEEEeCCCCEEEEEC
Confidence            478999999999999 899999999999999999876              23333 6788899999999999988885 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~  189 (316)
                      .|++|++||+.++                +.+..+.+|...  |.+++| +|++.+|++|+.|+.|++||++++ .+...
T Consensus        75 ~d~~i~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  135 (304)
T 2ynn_A           75 DDFRIRVFNYNTG----------------EKVVDFEAHPDY--IRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (304)
T ss_dssp             TTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred             CCCEEEEEECCCC----------------cEEEEEeCCCCc--EEEEEE-cCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence            7999999999988                678889999976  999999 999999999999999999999887 55677


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCC-CCcccceeeeecC-CCCceeEEecCCCeEEEEEe
Q 021160          190 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANKQG-REDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~s~~~d~~~~~w~~  265 (316)
                      +.+|...|.+++|+| ++..|++|+.|++|++||++... ...+. .+...+....+.. +++.++++++.|+.|++||+
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~  215 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence            889999999999999 56889999999999999997765 22222 3334444444322 36789999999999999998


Q ss_pred             cccCcc---------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          266 QRRQTL---------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       266 ~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ++++..         +. ..+.|+...++++..+|.|.+||...+.
T Consensus       216 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            765322         12 2678888889999999999999987765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=260.60  Aligned_cols=235  Identities=16%  Similarity=0.251  Sum_probs=204.3

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||..+|++++|+|++ .++++|+.||.|++||+.+++              ....+ .+|...|.+++|+|++++|+++
T Consensus       105 ~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~--------------~~~~l-~~h~~~V~~v~~~~~~~~l~sg  168 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--------------FERTL-KGHTDSVQDISFDHSGKLLASC  168 (410)
T ss_dssp             ECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC--------------CCEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-eccCCcEEEEEEcCCCCEEEEE
Confidence            4899999999999998 899999999999999999886              33333 7899999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|++|++||+.+.                ..+..+.+|...  |.+++| +|++.+|++|+.|+.|++||+++++++..
T Consensus       169 s~D~~i~iwd~~~~----------------~~~~~~~~h~~~--V~~v~~-~p~~~~l~s~s~D~~i~~wd~~~~~~~~~  229 (410)
T 1vyh_C          169 SADMTIKLWDFQGF----------------ECIRTMHGHDHN--VSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKT  229 (410)
T ss_dssp             ETTSCCCEEETTSS----------------CEEECCCCCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eCCCeEEEEeCCCC----------------ceeEEEcCCCCC--EEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence             7999999999887                677788889876  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCC--------------------C
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRE--------------------D  248 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~--------------------~  248 (316)
                      +.+|...|.+++|+|++.+|++++.|+.|++||+.++. ...+.+|...+..+. +.++                    +
T Consensus       230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS-WAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECCSCGGGGGGGCCSCC-------C
T ss_pred             EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEE-EcCcccccchhhhccccccccCCCC
Confidence            99999999999999999999999999999999998876 556667777776665 4443                    5


Q ss_pred             ceeEEecCCCeEEEEEecccCcc---------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          249 HSRITLTPDVIMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       249 ~~~~s~~~d~~~~~w~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .++++++.|+.+++||+.++...         +. ..+.|++..+.++..++.|.+||+..+.
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            68999999999999998865322         22 2677888899999999999999986653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.5e-37  Score=260.30  Aligned_cols=228  Identities=11%  Similarity=0.096  Sum_probs=179.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+........       ..+|...|++++|+|++ ++|++|+.|+.|++||+++++             
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~-------~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~-------------  172 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFA-------KYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKA-------------  172 (357)
T ss_dssp             TSCEEEC--------CCCCEE-------ECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTE-------------
T ss_pred             CCEEEEeeccccceeEEEeec-------cCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc-------------
Confidence            689999999887653322211       12489999999999999 899999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       +...+ .+|...|.+++|++++. ++++ +.|++|++||++++                +....+..+.....+.+++|
T Consensus       173 -~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~----------------~~~~~~~~~~~~~~v~~v~~  234 (357)
T 4g56_B          173 -VLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP----------------KPATRIDFCASDTIPTSVTW  234 (357)
T ss_dssp             -EEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS----------------SCBCBCCCTTCCSCEEEEEE
T ss_pred             -EEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC----------------ceeeeeeeccccccccchhh
Confidence             33333 78999999999999885 6666 57999999999887                44444443333244999999


Q ss_pred             ecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCCCCCCCCCccc
Q 021160          160 FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEK  237 (316)
Q Consensus       160 ~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  237 (316)
                       +|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|+|||++++++....+|...
T Consensus       235 -sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~  313 (357)
T 4g56_B          235 -HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDF  313 (357)
T ss_dssp             -CTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSC
T ss_pred             -hhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCC
Confidence             776 5789999999999999999999999999999999999999987 5699999999999999998885555679888


Q ss_pred             ceeeeecCC-CCceeEEecCCCeEEEEEecccCc
Q 021160          238 IMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       238 ~~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +..++ |+| ++.++++++.|+.|++|++.....
T Consensus       314 V~~va-fsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          314 VTGVA-WSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEEEE-ECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EEEEE-EeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            87777 565 889999999999999999876533

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-36  Score=248.81  Aligned_cols=224  Identities=18%  Similarity=0.185  Sum_probs=188.7

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|.|+|||+.+......+..           |..+|.+++|+|++ ++|++|+.|+.|++||+.+++            
T Consensus        33 ~dg~v~lWd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~------------   88 (304)
T 2ynn_A           33 YSGRVELWNYETQVEVRSIQV-----------TETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE------------   88 (304)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC------------
T ss_pred             CCCcEEEEECCCCceeEEeec-----------cCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCc------------
Confidence            368999999988765544443           67889999999998 899999999999999999886            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +...+ .+|...|.+++|+|++.+|+++ .|++|++||++++.               .....+.+|...  |.+++|
T Consensus        89 --~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---------------~~~~~~~~h~~~--v~~v~~  148 (304)
T 2ynn_A           89 --KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---------------ALEQTFEGHEHF--VMCVAF  148 (304)
T ss_dssp             --EEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---------------EEEEEECCCCSC--EEEEEE
T ss_pred             --EEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---------------chhhhhcccCCc--EEEEEE
Confidence              33333 6899999999999999988885 79999999998751               244667888866  999999


Q ss_pred             ecC-CCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcC--CCCeEEEEeCCCcEEEecCCCCC-CCCCCCC
Q 021160          160 FGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       160 ~~~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                       +| ++.+|++|+.|+.|++||+.+++....+. +|...+..++|+|  ++++|++++.|++|++||+++++ +..+.+|
T Consensus       149 -~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h  227 (304)
T 2ynn_A          149 -NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (304)
T ss_dssp             -CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             -CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence             77 67899999999999999998877666654 4667899999987  67899999999999999999877 6777888


Q ss_pred             cccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ...+.... +++++.++++++.|+.|++||+.+.+.
T Consensus       228 ~~~v~~~~-~~p~~~~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          228 MSNVSFAV-FHPTLPIIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             SSCEEEEE-ECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCEEEEE-ECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            88876665 788899999999999999999887643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=247.98  Aligned_cols=262  Identities=16%  Similarity=0.209  Sum_probs=203.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+...........        ..+|...|.+++|+|++ ++|++|+.|+.+++|++..+...           
T Consensus        37 D~~i~iw~~~~~~~~~~~~~--------~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~-----------   96 (345)
T 3fm0_A           37 DRRIRIWGTEGDSWICKSVL--------SEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFE-----------   96 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEE--------CSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EE-----------
T ss_pred             CCeEEEEEcCCCcceeeeee--------ccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeE-----------
Confidence            68999999987653222211        12589999999999999 89999999999999998866410           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +...+ .+|...|.+++|+|++++|+++ .|++|++||++...             .......+.+|...  |.+++| 
T Consensus        97 -~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-  158 (345)
T 3fm0_A           97 -CVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-------------EYECVSVLNSHTQD--VKHVVW-  158 (345)
T ss_dssp             -EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-------------CEEEEEEECCCCSC--EEEEEE-
T ss_pred             -EEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-------------CeEEEEEecCcCCC--eEEEEE-
Confidence             22222 7899999999999999988885 79999999997651             00234566778866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCe--eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CC--------
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP--------  229 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~--------  229 (316)
                      +|++.+|++++.|+.|++||..+++  +...+.+|...|.+++|+|++++|++++.|++|++|+..... ..        
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence            9999999999999999999998875  456788999999999999999999999999999999964322 11        


Q ss_pred             -------CCCC-CcccceeeeecCCCCceeEEecCCCeEEEEEecccC------------------cceeE-Eeeccc-c
Q 021160          230 -------PLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------------TLAYR-ERRYNA-A  281 (316)
Q Consensus       230 -------~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~------------------~~~~~-~~~~~~-~  281 (316)
                             .+.+ |...+..++ +++++..+++++.|+.+++|+.....                  ..+.. .+.|+. .
T Consensus       239 ~~~~~~~~~~~~h~~~v~~v~-~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  317 (345)
T 3fm0_A          239 PSWKCICTLSGFHSRTIYDIA-WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG  317 (345)
T ss_dssp             CEEEEEEEECSSCSSCEEEEE-ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred             CccceeEEecCCCCCcEEEEE-EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence                   1112 555565555 77888899999999999999986431                  11222 677776 4


Q ss_pred             cccccCCCCeEEEEeccCCCC
Q 021160          282 DFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       282 ~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .++++..||.|.+|+......
T Consensus       318 ~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          318 LLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EEEEEETTSCEEEEEECC---
T ss_pred             EEEEcCCCCcEEEEEecCCCC
Confidence            788999999999999987664

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=247.06  Aligned_cols=265  Identities=16%  Similarity=0.195  Sum_probs=192.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.............       .+|...|.+++|+|++ .+|++|+.|+.|++||+......       . ..
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~-------~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~-------~-~~   96 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDE-------TAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADR-------T-FE   96 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECT-------TCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------CC
T ss_pred             CCEEEEEEecCCCeEEEEEEec-------CCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCc-------c-cc
Confidence            6899999998654322222211       1388999999999998 89999999999999998643200       0 00


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      ........+|...|.+++|+|++++|+++ .|++|++||++...            ...+.+..+.+|...  |.+++| 
T Consensus        97 ~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~------------~~~~~~~~~~~h~~~--v~~v~~-  161 (330)
T 2hes_X           97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG------------EEYECISVLQEHSQD--VKHVIW-  161 (330)
T ss_dssp             CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC------------CCCEEEEEECCCSSC--EEEEEE-
T ss_pred             ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC------------CCeEEEEEeccCCCc--eEEEEE-
Confidence            01112237899999999999999988885 79999999995320            001244567788866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCC--eeEEEeecCccceEEEEEcCC--CCeEEEEeCCCcEEEecCCCCC---------
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD---------  227 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~p~--~~~l~s~~~d~~i~iwd~~~~~---------  227 (316)
                      +|++.+|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +..|++++.|++|++||+....         
T Consensus       162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence            999999999999999999999876  678889999999999999998  6789999999999999986541         


Q ss_pred             CCCCCC-CcccceeeeecCCCCceeEEecCCCeEEEEEecccCc-------------ceeE-Eeec--ccccccccCCCC
Q 021160          228 FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT-------------LAYR-ERRY--NAADFESDEEEG  290 (316)
Q Consensus       228 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~-------------~~~~-~~~~--~~~~~~~~~~~~  290 (316)
                      ...+.. |...+..+. +++ +.++++++.|+.+++|+...+..             .+.. .+.|  +...++++..+|
T Consensus       242 ~~~~~~~h~~~v~~v~-~s~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          242 EAILPDVHKRQVYNVA-WGF-NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEECCSCCSSCEEEEE-ECT-TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             eeecccccccceEEEE-EcC-CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            223333 677777776 454 34899999999999999865421             1111 4455  466788888999


Q ss_pred             eEEEEeccC
Q 021160          291 ETYLLGFSD  299 (316)
Q Consensus       291 ~v~~~~~~~  299 (316)
                      .|.+|++..
T Consensus       320 ~v~~W~~~~  328 (330)
T 2hes_X          320 IVNFWSLEK  328 (330)
T ss_dssp             EEEEEEC--
T ss_pred             cEEEEEecc
Confidence            999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-35  Score=247.96  Aligned_cols=254  Identities=13%  Similarity=0.150  Sum_probs=204.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||..+.+....+..           |...|.+++|+|++ .++++|+.|+.+++|++.......       .. 
T Consensus        85 Dg~v~vWd~~~~~~~~~~~~-----------~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~-------~~-  144 (354)
T 2pbi_B           85 DGKVIVWDSFTTNKEHAVTM-----------PCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN-------MA-  144 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-----------SSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC-------SG-
T ss_pred             CCeEEEEECCCCCcceEEec-----------CCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc-------cc-
Confidence            78999999987766555543           56789999999999 899999999999999987543100       00 


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .......+|...|.+++|+|++..|++ +.|++|++||++++                +.+..+.+|...  +.+++| 
T Consensus       145 -~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----------------~~~~~~~~h~~~--v~~~~~-  204 (354)
T 2pbi_B          145 -AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----------------QLLQSFHGHGAD--VLCLDL-  204 (354)
T ss_dssp             -GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----------------eEEEEEcCCCCC--eEEEEE-
Confidence             111222578999999999999987777 57999999999988                678889999876  999998 


Q ss_pred             cC--CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC--CCc
Q 021160          161 GP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP--DNA  235 (316)
Q Consensus       161 ~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--~~~  235 (316)
                      +|  ++.+|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++... ...+.  .+.
T Consensus       205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~  284 (354)
T 2pbi_B          205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII  284 (354)
T ss_dssp             CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc
Confidence            66  57899999999999999999999999999999999999999999999999999999999998765 22222  122


Q ss_pred             ccceeeeecCCCCceeEEecCCCeEEEEEecccCcc---------ee-EEeecccccccccCCCCeEEEEe
Q 021160          236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                      ..+. ...+++++.++++++.|+.+++||+.++...         +. ..+.|++..+++++.++.|.+|+
T Consensus       285 ~~~~-~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          285 FGAS-SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEE-EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ccee-EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            2333 3447889999999999999999998765322         11 26778888888888888888774

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.1e-35  Score=241.82  Aligned_cols=236  Identities=16%  Similarity=0.292  Sum_probs=198.7

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||...|++++|+|++ ++|++|+.||.|++|++.+++              ....+ .+|...|.+++|+|++++|+++
T Consensus        20 ~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~   83 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGK--------------FEKTI-SGHKLGISDVAWSSDSNLLVSA   83 (312)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcc--------------cchhh-ccCCCceEEEEEcCCCCEEEEE
Confidence            4699999999999999 899999999999999998776              22223 7889999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|+.|++||++++                +....+.+|...  |.+++| +|++.++++|+.|+.|++||+++++.+..
T Consensus        84 ~~d~~i~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           84 SDDKTLKIWDVSSG----------------KCLKTLKGHSNY--VFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             ETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEECCCC----------------cEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence             7999999999887                677888899866  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +..|...|.+++|+|++++|++++.|+.|++||++.++ +..+..+.........+++++.++++++.|+.+++||+.++
T Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999999999999999999999998876 33333333333444558899999999999999999999865


Q ss_pred             CcceeE------------Ee-ecccccccccCCCCeEEEEeccCCC
Q 021160          269 QTLAYR------------ER-RYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       269 ~~~~~~------------~~-~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +.....            .+ .+....+.++..+|.|++|++..+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            432211            11 2345667888899999999987664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.3e-36  Score=250.56  Aligned_cols=236  Identities=10%  Similarity=0.071  Sum_probs=190.9

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      |...|.+++|+|++  .|++|+.||.|+|||+.+++...           .......+|...|++++|+|+|++|+++ .
T Consensus        81 ~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           81 TEAGVADLTWVGER--GILVASDSGAVELWELDENETLI-----------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             ESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCE-----------EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCcee-----------EeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            45689999999975  78899999999999999876211           1112225899999999999999998885 7


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      |++|++||++++                +.+..+.+|...  |.+++| ++++ .++++++.|+.|++||+++++....+
T Consensus       148 d~~i~iwd~~~~----------------~~~~~~~~h~~~--V~~~~~-~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          148 DICIKVWDLAQQ----------------VVLSSYRAHAAQ--VTCVAA-SPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             TSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             CCeEEEEECCCC----------------cEEEEEcCcCCc--eEEEEe-cCCCCCceeeeccccccccccccccceeeee
Confidence            999999999988                788899999977  999999 7776 57899999999999999999988877


Q ss_pred             e--cCccceEEEEEcCC-CCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCC-ceeEEecCCCeEEEEEe
Q 021160          191 V--GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRED-HSRITLTPDVIMHVLRL  265 (316)
Q Consensus       191 ~--~~~~~v~~~~~~p~-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~w~~  265 (316)
                      .  .|...+.+++|+|+ +++|++|+.|+.|++||+++++ +..+.+|...+..+. +++++ .++++++.|+.|++||+
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~-fsp~g~~~lasgs~D~~i~vwd~  287 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV-FSPHSVPFLASLSEDCSLAVLDS  287 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE-ECSSSSCCEEEEETTSCEEEECT
T ss_pred             ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE-EccCCCeEEEEEeCCCeEEEEEC
Confidence            4  35567899999995 4678999999999999999877 677888988887776 67765 67899999999999998


Q ss_pred             cccCcc--------eeE-Eeeccccc-ccccCCCCeEEEEeccCCC
Q 021160          266 QRRQTL--------AYR-ERRYNAAD-FESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       266 ~~~~~~--------~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~~  301 (316)
                      .+++..        +.. .+.|+... ++++..|++|.+|++....
T Consensus       288 ~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          288 SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            876432        222 57777765 5678889999999987643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-34  Score=243.01  Aligned_cols=254  Identities=14%  Similarity=0.143  Sum_probs=194.7

Q ss_pred             ceeeEEEEeeCCCcceE--EEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRL--FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~--~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+...+....  ....      ...+|...|.+++|+|++ .++++|+.|++|++||+++++           
T Consensus        48 D~~v~iWd~~~~~~~~~~~~~~~------~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~-----------  109 (343)
T 2xzm_R           48 DKTVMIWKLYEEEQNGYFGIPHK------ALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGT-----------  109 (343)
T ss_dssp             TSCEEEEEECSSCCSSBSEEEEE------EECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSC-----------
T ss_pred             CCEEEEEECCcCCcccccccccc------hhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCc-----------
Confidence            68999999976542110  0011      123689999999999998 899999999999999999876           


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee---eCCcCCceee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SGHRNSQTVK  155 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~  155 (316)
                         +...+ .+|...|.+++|+|++++|+++ .|++|++||+...                 .....   .+|...  +.
T Consensus       110 ---~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-----------------~~~~~~~~~~~~~~--v~  166 (343)
T 2xzm_R          110 ---TYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-----------------CKFSSAEKENHSDW--VS  166 (343)
T ss_dssp             ---EEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-----------------EEEECCTTTSCSSC--EE
T ss_pred             ---EEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-----------------ceeeeecccCCCce--ee
Confidence               23333 6899999999999999988874 7999999998743                 22222   256654  99


Q ss_pred             eEEEecCCC----------cEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          156 GVNFFGPND----------EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       156 ~~~~~~~~~----------~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      +++| +|++          .++++++.|+.|++||. ..+....+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus       167 ~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          167 CVRY-SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEE-CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eeee-ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999 7876          78999999999999994 5777888899999999999999999999999999999999954


Q ss_pred             CC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc----------------------ee-EEeecccc
Q 021160          226 TD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------------------AY-RERRYNAA  281 (316)
Q Consensus       226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~----------------------~~-~~~~~~~~  281 (316)
                      .. ......+...+..++ +++++.+++ ++.|+.+++|++.+....                      +. ..+.|++.
T Consensus       245 ~~~~~~~~~~~~~v~~v~-~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  322 (343)
T 2xzm_R          245 LTYPQREFDAGSTINQIA-FNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK  322 (343)
T ss_dssp             CSSCSEEEECSSCEEEEE-ECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred             CcccceeecCCCcEEEEE-ECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence            33 222222334454554 778776665 556888999998654321                      11 26788888


Q ss_pred             cccccCCCCeEEEEeccCC
Q 021160          282 DFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       282 ~~~~~~~~~~v~~~~~~~~  300 (316)
                      .++++..+|.|.+|++..+
T Consensus       323 ~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          323 KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CEEEEETTSEEEEEEEEEE
T ss_pred             eEEEecCCceEEEEEEEcc
Confidence            8999999999999988653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.3e-36  Score=254.01  Aligned_cols=262  Identities=13%  Similarity=0.130  Sum_probs=205.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+..           |...|.+++|+|++ ++|++|+.|+.+++|++.+....        -..
T Consensus        87 D~~v~iWd~~~~~~~~~~~~-----------h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~--------~~~  146 (380)
T 3iz6_a           87 DGRLIVWNALTSQKTHAIKL-----------HCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADR--------DGN  146 (380)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----------CCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSC--------CCS
T ss_pred             CCeEEEEECCCCccceEEec-----------CCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCccc--------cCC
Confidence            78999999988766554443           67889999999999 89999999999999999764310        001


Q ss_pred             cccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCccee-----eCCcCCcee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTV  154 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i  154 (316)
                      ........+|...+.++.|+|++ ..|++ +.|++|++||+.++                ..+..+     .+|...  +
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~----------------~~~~~~~~~~~~~h~~~--v  208 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG----------------QRISIFGSEFPSGHTAD--V  208 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC----------------CEEEEECCCSSSSCCSC--E
T ss_pred             ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC----------------cEEEEeecccCCCCccC--e
Confidence            11223347899999999999975 45666 57999999999887                444444     466655  9


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  232 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~  232 (316)
                      .+++|.++++.++++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|++|++||++++. +..+.
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            9999955589999999999999999998 567788899999999999999999999999999999999998865 22221


Q ss_pred             CCc------ccceeeeecCCCCceeEEecCCCeEEEEEecccCcc-------------ee-EEeecccccccccCCCCeE
Q 021160          233 DNA------EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL-------------AY-RERRYNAADFESDEEEGET  292 (316)
Q Consensus       233 ~~~------~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~v  292 (316)
                      .+.      ...+....++++++++++++.|+.+++||+..++..             +. ..+.|++..++++..++.|
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence            111      112334448899999999999999999997543221             12 2688899999999999999


Q ss_pred             EEEeccCCC
Q 021160          293 YLLGFSDSD  301 (316)
Q Consensus       293 ~~~~~~~~~  301 (316)
                      .+|+++...
T Consensus       369 ~iW~~~~~~  377 (380)
T 3iz6_a          369 KIWAFSGHR  377 (380)
T ss_dssp             EEEECCSSS
T ss_pred             EEEecCCCc
Confidence            999997643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=246.25  Aligned_cols=239  Identities=17%  Similarity=0.245  Sum_probs=197.0

Q ss_pred             CCcc-ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           32 MNSI-RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        32 gh~~-~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      +|.. .|.+++|+|++ .+||+|+.|+.|++||+.+++..            +...+..+|...|.+++|+|++++|+++
T Consensus        13 ~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~   79 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWI------------CKSVLSEGHQRTVRKVAWSPCGNYLASA   79 (345)
T ss_dssp             CSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEE------------EEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcce------------eeeeeccccCCcEEEEEECCCCCEEEEE
Confidence            5776 89999999999 89999999999999999876421            2223336899999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---ee
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KL  186 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~---~~  186 (316)
                       .|+++++|++....              ......+.+|...  |.+++| +|++++|++|+.|+.|++||+.++   ++
T Consensus        80 s~D~~v~iw~~~~~~--------------~~~~~~~~~h~~~--v~~v~~-sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           80 SFDATTCIWKKNQDD--------------FECVTTLEGHENE--VKSVAW-APSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             ETTSCEEEEEECCC---------------EEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             ECCCcEEEEEccCCC--------------eEEEEEccCCCCC--ceEEEE-eCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence             79999999987651              0245677889876  999999 999999999999999999999876   34


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       187 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      +..+.+|...|.+++|+|++++|++++.|+.|++|+.+...   ...+.+|...+..+. +++++.++++++.|+.|++|
T Consensus       143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~-~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEE
T ss_pred             EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE-ECCCCCEEEEEeCCCeEEEe
Confidence            66778899999999999999999999999999999988764   356778888887776 78899999999999999999


Q ss_pred             EecccC-------------------------cceeE-EeecccccccccCCCCeEEEEeccCCC
Q 021160          264 RLQRRQ-------------------------TLAYR-ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       264 ~~~~~~-------------------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +.....                         ..++. .+.+....+++...++.+.+|+...+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            974321                         11222 566777788888888889999876554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.2e-35  Score=244.67  Aligned_cols=238  Identities=12%  Similarity=0.137  Sum_probs=201.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||.+.|++++|+|++ .+|++|+.||.|++||+.+++              ....+ ..|...|.+++|+|++++++++
T Consensus        52 ~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~--------------~~~~~-~~~~~~v~~~~~s~~~~~l~s~  115 (340)
T 1got_B           52 RGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTN--------------KVHAI-PLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCC--------------EEEEE-ECSSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCC--------------cceEe-ecCCccEEEEEECCCCCEEEEE
Confidence            4799999999999999 899999999999999998776              22222 5678899999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|+.|++|++.+...            .......+.+|...  +.++.| ++++. +++++.|+.|++||+++++.+..
T Consensus       116 ~~d~~v~iw~~~~~~~------------~~~~~~~~~~h~~~--v~~~~~-~~~~~-l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          116 GLDNICSIYNLKTREG------------NVRVSRELAGHTGY--LSCCRF-LDDNQ-IVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             ETTCEEEEEETTTCSB------------SCEEEEEEECCSSC--EEEEEE-EETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred             eCCCeEEEEECccCCC------------cceeEEEecCCCcc--EEEEEE-CCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence             799999999976510            01234567788866  999999 77665 88999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +.+|...|.+++|+|++++|++++.|+.|++||++.+. ...+.+|...+..+. +++++.++++++.|+.+++||++..
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-FFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE-EcCCCCEEEEEcCCCcEEEEECCCC
Confidence            99999999999999999999999999999999999877 666778888876666 7889999999999999999998764


Q ss_pred             Ccc-----------e-eEEeecccccccccCCCCeEEEEeccCCC
Q 021160          269 QTL-----------A-YRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       269 ~~~-----------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +..           + ...+.|++..+.++..++.|.+||...+.
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            321           1 12678889999999999999999986654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-34  Score=261.12  Aligned_cols=252  Identities=15%  Similarity=0.206  Sum_probs=204.3

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      +.|+|||+.+.+....+.           +|...|++++|+|++ ++||+|+.|++|+|||+.+++.             
T Consensus        39 ~~v~l~~~~~~~~~~~~~-----------~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~-------------   93 (611)
T 1nr0_A           39 TSVYTVPVGSLTDTEIYT-----------EHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH-------------   93 (611)
T ss_dssp             TEEEEEETTCSSCCEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC-------------
T ss_pred             CEEEEecCCCcccCeEec-----------CCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcc-------------
Confidence            578999997665544442           488999999999999 8999999999999999976541             


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEe-cC----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISY-ND----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                      .......+|...|.+++|+|+++.|+++ .+    +.|++||.  +                .....+.+|...  |.++
T Consensus        94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~----------------~~~~~l~gh~~~--v~~v  153 (611)
T 1nr0_A           94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G----------------TSNGNLTGQARA--MNSV  153 (611)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C----------------CBCBCCCCCSSC--EEEE
T ss_pred             eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C----------------CCcceecCCCCC--ceEE
Confidence            1111226788999999999999988774 32    36777774  3                355677889866  9999


Q ss_pred             EEecCCCc-EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC---
Q 021160          158 NFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP---  232 (316)
Q Consensus       158 ~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---  232 (316)
                      +| +|++. .|++|+.|++|++||..++++...+.+|...|.+++|+|++++|++++.|++|++||+.+++ ...+.   
T Consensus       154 ~f-~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~  232 (611)
T 1nr0_A          154 DF-KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS  232 (611)
T ss_dssp             EE-CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             EE-CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence            99 89886 59999999999999999999999999999999999999999999999999999999988765 33331   


Q ss_pred             ----CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc-------------------------------------
Q 021160          233 ----DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL-------------------------------------  271 (316)
Q Consensus       233 ----~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-------------------------------------  271 (316)
                          +|...+..+. |++++.++++++.|+++++||+.+++..                                     
T Consensus       233 ~~~~~h~~~V~~v~-~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~  311 (611)
T 1nr0_A          233 LKNVAHSGSVFGLT-WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  311 (611)
T ss_dssp             SSSCSSSSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             ccccccCCCEEEEE-ECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeC
Confidence                6888887776 8899999999999999999998754211                                     


Q ss_pred             ---------------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          272 ---------------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       272 ---------------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                                     +. ..+.|++..+.+...++.|.+|+...+.
T Consensus       312 ~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          312 ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                           11 1466778888888889999999987653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.5e-36  Score=251.28  Aligned_cols=261  Identities=11%  Similarity=0.092  Sum_probs=196.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++|+..+..+...+....       .+|...|.+++|+|++  .+++++.||.|++||+.+++...          
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~-------~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~----------  129 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAG-------VQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLL----------  129 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEE-------EECSSCEEEEEEETTT--EEEEEETTSCEEEC--------C----------
T ss_pred             cCeEEEEECCCCCcceeEeccc-------CCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeE----------
Confidence            5778888876654322211111       1378899999999987  46677889999999998876221          


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .......+|...|.+++|+|++++|+++ .|++|++||++++                +.+..+.+|...  |.+++| 
T Consensus       130 -~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~----------------~~~~~~~~h~~~--v~~v~~-  189 (357)
T 4g56_B          130 -VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK----------------AVLKSYNAHSSE--VNCVAA-  189 (357)
T ss_dssp             -CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-
T ss_pred             -EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEEcCCCCC--EEEEEE-
Confidence             1111225789999999999999988885 7999999999988                678888999876  999999 


Q ss_pred             cCCCc-EEEEeccCCeEEEEeccCCeeEEEee--cCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC-CCCCCCCc
Q 021160          161 GPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-FPPLPDNA  235 (316)
Q Consensus       161 ~~~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~  235 (316)
                      ++++. ++++++.|+.|++||+++++....+.  .|...+.+++|+|++ .+|++|+.|+.|++||+++.+ ...+.+|.
T Consensus       190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~  269 (357)
T 4g56_B          190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS  269 (357)
T ss_dssp             CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS
T ss_pred             ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc
Confidence            77764 78999999999999999988776554  466789999999975 578999999999999999877 66777888


Q ss_pred             ccceeeeecCCC-CceeEEecCCCeEEEEEecccCcc--------eeE-Eeec-ccccccccCCCCeEEEEeccCCCC
Q 021160          236 EKIMKANKQGRE-DHSRITLTPDVIMHVLRLQRRQTL--------AYR-ERRY-NAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       236 ~~~~~~~~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~--------~~~-~~~~-~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ..+..++ ++++ ++++++++.|+.|++||+++++..        +.. .+.| +...+++...||.|.+|++....+
T Consensus       270 ~~v~~l~-~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          270 QNITGLA-YSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             SCEEEEE-ECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             eeEEEEE-EcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            8887776 6665 468899999999999998875332        222 5776 677888999999999999866543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-34  Score=238.14  Aligned_cols=250  Identities=15%  Similarity=0.231  Sum_probs=200.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|+|++ ++|++|+.|+.|++||+++++             
T Consensus        44 dg~i~iw~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~-------------   98 (312)
T 4ery_A           44 DKLIKIWGAYDGKFEKTIS-----------GHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGK-------------   98 (312)
T ss_dssp             TSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------------
T ss_pred             CCeEEEEeCCCcccchhhc-----------cCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCc-------------
Confidence            6899999998766544432           478899999999998 899999999999999999876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +...+ .+|...|.+++|+|++++|+++ .|+.|++||++++                +....+..|...  +.+++| 
T Consensus        99 -~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~-  157 (312)
T 4ery_A           99 -CLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----------------KCLKTLPAHSDP--VSAVHF-  157 (312)
T ss_dssp             -EEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSC--EEEEEE-
T ss_pred             -EEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------EEEEEecCCCCc--EEEEEE-
Confidence             23333 6788999999999999988885 7999999999887                677788888866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                      +|++.++++++.||.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||++.++ +..+.+|....
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  237 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK  237 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence            9999999999999999999999998887764 456789999999999999999999999999998876 44555555433


Q ss_pred             e--eeeecCCCCceeEEecCCCeEEEEEecccCccee---------E-Eeeccccccccc--CCCCeEEEEec
Q 021160          239 M--KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------R-ERRYNAADFESD--EEEGETYLLGF  297 (316)
Q Consensus       239 ~--~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~---------~-~~~~~~~~~~~~--~~~~~v~~~~~  297 (316)
                      .  ......+++.++++++.|+.|++|++.+++....         . .+.|....+++.  +.++.|.+|..
T Consensus       238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            2  2233345788999999999999999987643321         1 455555555544  35666777764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.7e-34  Score=241.58  Aligned_cols=241  Identities=10%  Similarity=0.118  Sum_probs=201.5

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||...|++++|+|++ .+|++|+.||.|++||..+++              ....+ ..|...|.+++|+|++.+++++
T Consensus        61 ~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~-~~~~~~v~~~~~sp~g~~lasg  124 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTN--------------KEHAV-TMPCTWVMACAYAPSGCAIACG  124 (354)
T ss_dssp             ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--------------EEEEE-ECSSSCCCEEEECTTSSEEEEE
T ss_pred             cCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCC--------------cceEE-ecCCCCEEEEEECCCCCEEEEe
Confidence            4799999999999999 899999999999999998775              22222 4567789999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|+.+++|++.......          .......+.+|...  |.+++| +|++..|++++.|++|++||+++++++..
T Consensus       125 ~~d~~i~v~~~~~~~~~~----------~~~~~~~~~~h~~~--v~~~~~-~~~~~~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNEN----------MAAKKKSVAMHTNY--LSACSF-TNSDMQILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             STTSEEEEEECCCCTTCC----------SGGGCEEEEECSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eCCCCEEEEEEecccccc----------ccccceeeeccCCc--EEEEEE-eCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence             79999999986541100          01234567788866  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcC--CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          190 MVGDRHVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +.+|...|.+++|+|  ++++|++++.|+.|++||+++++ ...+..|...+..+. +++++.++++++.|+.+++||++
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR-YYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE-EeCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999988  46799999999999999999887 666777888886666 78889999999999999999987


Q ss_pred             ccCcc------------eeEEeecccccccccCCCCeEEEEeccCCC
Q 021160          267 RRQTL------------AYRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       267 ~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .....            ....+.|++..+.++..++.|.+||...+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence            64221            122678888899999999999999987654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-34  Score=260.67  Aligned_cols=275  Identities=10%  Similarity=0.054  Sum_probs=206.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||..+.+....+           .+|...|++++|+|++ .+|++|+.|++|++||+.+++....+.       
T Consensus       169 D~~v~lwd~~~~~~~~~l-----------~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~-------  229 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTF-----------GEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFE-------  229 (611)
T ss_dssp             TSCEEEEETTTBEEEEEE-----------CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECB-------
T ss_pred             CCeEEEEECCCCeEeeee-----------ccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeec-------
Confidence            688999998665433222           2589999999999999 899999999999999998876321110       


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCC---------------------------CccCCc
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPS---------------------------PLSLSP  133 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~---------------------------~~~~~~  133 (316)
                       .......+|...|.+++|+|++++|+++ .|++|++||+.++....                           ...+..
T Consensus       230 -~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~  308 (611)
T 1nr0_A          230 -DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF  308 (611)
T ss_dssp             -CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             -cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence             0000012799999999999999988885 79999999998653110                           011112


Q ss_pred             cccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-e---------------------
Q 021160          134 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-V---------------------  191 (316)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~---------------------  191 (316)
                      ++.........+.+|...  |.+++| +|++++|++++.|+.|++||+.+++....+ .                     
T Consensus       309 ~~~~~~~~~~~~~gh~~~--v~~l~~-spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  385 (611)
T 1nr0_A          309 VNPELGSIDQVRYGHNKA--ITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS  385 (611)
T ss_dssp             EETTTTEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             EeCCCCCcceEEcCCCCC--EEEEEE-eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence            222233344556788866  999999 999999999999999999998876543221 0                     


Q ss_pred             ------------------------------------------------------------cCccceEEEEEcCCCCeEEE
Q 021160          192 ------------------------------------------------------------GDRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       192 ------------------------------------------------------------~~~~~v~~~~~~p~~~~l~s  211 (316)
                                                                                  .|...+.+++|+|++++|++
T Consensus       386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las  465 (611)
T 1nr0_A          386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV  465 (611)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence                                                                        02234678999999999999


Q ss_pred             EeCCCcEEEecCCCCCC---CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc-c-----------CcceeE-E
Q 021160          212 CGIEKTVKLWAPMPTDF---PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-R-----------QTLAYR-E  275 (316)
Q Consensus       212 ~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~-~-----------~~~~~~-~  275 (316)
                      |+.|++|++||+.....   .. .+|...+..++ +++++.++++++.|+.+++|++.+ .           ...+.. .
T Consensus       466 gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~-fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~  543 (611)
T 1nr0_A          466 GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA-FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  543 (611)
T ss_dssp             EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             eCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE
Confidence            99999999999977542   22 45777776666 899999999999999999999876 2           111222 7


Q ss_pred             eecccccccccCCCCeEEEEeccCCC
Q 021160          276 RRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       276 ~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ++|++..++++..++.|.+|++..+.
T Consensus       544 fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          544 WSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCcc
Confidence            89999999999999999999997654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-34  Score=245.32  Aligned_cols=261  Identities=16%  Similarity=0.251  Sum_probs=198.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccc-------cccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSE-------NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~-------~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~   74 (316)
                      ++.++||++.+.+....+..+....       ......+...|.+++|+|++ ++|++|+.|+.|++||+.+++      
T Consensus        84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~------  156 (393)
T 1erj_A           84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRK------  156 (393)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTE------
T ss_pred             CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc------
Confidence            4678999998776544332221100       00001233459999999999 899999999999999999876      


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                              ....+ .+|...|.+++|+|++++|+++ .|++|++||++++                +....+. +...  
T Consensus       157 --------~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~----------------~~~~~~~-~~~~--  208 (393)
T 1erj_A          157 --------IVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG----------------QCSLTLS-IEDG--  208 (393)
T ss_dssp             --------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------EEEEEEE-CSSC--
T ss_pred             --------EEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC----------------eeEEEEE-cCCC--
Confidence                    22233 7899999999999999988885 7999999999887                4555554 3333  


Q ss_pred             eeeEEEecC-CCcEEEEeccCCeEEEEeccCCeeEEEe-------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          154 VKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM-------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       154 i~~~~~~~~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      +.+++| +| ++.++++|+.|+.|++||+++++.+..+       .+|...|.+++|+|++++|++++.|+.|++||++.
T Consensus       209 v~~~~~-~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          209 VTTVAV-SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEEEEE-CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cEEEEE-ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            899999 66 8999999999999999999999887776       57889999999999999999999999999999976


Q ss_pred             CC-------------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE----------Eee-----
Q 021160          226 TD-------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------ERR-----  277 (316)
Q Consensus       226 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~----------~~~-----  277 (316)
                      ..             ...+.+|...+..++ +++++.++++++.|+.+++||+.+++.....          .+.     
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEE-ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEE-ECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence            43             123345666666665 7788899999999999999998876433221          222     


Q ss_pred             -cccccccccCCCCeEEEEeccC
Q 021160          278 -YNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       278 -~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                       |+...++++..+|.|.+|++..
T Consensus       367 ~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          367 GPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCCEEEEECCCCcEEECcccc
Confidence             3456788888899999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.7e-34  Score=232.54  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=191.5

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC--CCeEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  108 (316)
                      .+|...|++++|+|++ ++|++|+.|++|++||+.....       .     ....+ .+|...|.+++|+++  +++|+
T Consensus         6 ~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~-------~-----~~~~l-~gH~~~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETH-------K-----LIDTL-TGHEGPVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCB-------C-----CCEEE-CCCSSCEEEEEECCGGGCSEEE
T ss_pred             cCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCc-------E-----EEEEE-ccccCCeEEEEecCCCcCCEEE
Confidence            4799999999999999 8999999999999999975421       1     22222 789999999999864  78888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccCCe
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      ++ .|++|++||++++.              ......+.+|...  |.+++| +|+  +.+|++++.|+.|++||++++.
T Consensus        72 s~s~D~~v~iWd~~~~~--------------~~~~~~~~~h~~~--v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGR--------------WSQIAVHAVHSAS--VNSVQW-APHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEETTTEEEEEEBSSSC--------------BCCCEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             EEcCCCEEEEEEcCCCc--------------eEEEEEeecCCCc--eeEEEe-CcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            85 79999999998751              0234556778766  999999 887  8899999999999999998763


Q ss_pred             --eEEEeecCccceEEEEEcCC-------------CCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeeecC
Q 021160          186 --LVRLMVGDRHVVNQLEPHPH-------------IPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQG  245 (316)
Q Consensus       186 --~~~~~~~~~~~v~~~~~~p~-------------~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~  245 (316)
                        ....+.+|...|.+++|+|+             +++|++|+.|++|++||++...     ...+.+|...+..+. |+
T Consensus       135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~-~s  213 (297)
T 2pm7_B          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WS  213 (297)
T ss_dssp             CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-EC
T ss_pred             ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE-EC
Confidence              24567789999999999997             4689999999999999987654     345778888887777 66


Q ss_pred             CC---CceeEEecCCCeEEEEEecccC--------------cceeE-EeecccccccccCCCCeEEEEecc
Q 021160          246 RE---DHSRITLTPDVIMHVLRLQRRQ--------------TLAYR-ERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       246 ~~---~~~~~s~~~d~~~~~w~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      ++   +.++++++.|+.+++|++....              ..++. .+.|++..+++...++.|.+|+..
T Consensus       214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            65   5899999999999999987532              11222 678889999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-33  Score=232.31  Aligned_cols=227  Identities=11%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      .+|.|+|||+...........         .+|.++|++++|+|.  + .+|++|+.|++|++||+++++..        
T Consensus        29 ~D~~v~iw~~~~~~~~~~~~l---------~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~--------   90 (297)
T 2pm7_B           29 SDKTIKIFEVEGETHKLIDTL---------TGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWS--------   90 (297)
T ss_dssp             TTSCEEEEEBCSSCBCCCEEE---------CCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBC--------
T ss_pred             CCCEEEEEecCCCCcEEEEEE---------ccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceE--------
Confidence            368999999975432222222         258999999999864  5 89999999999999999876421        


Q ss_pred             ceecccccccCCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                          .. ....+|...|.+++|+|+  +.+|++ +.|++|++||++....              .....+.+|...  |.
T Consensus        91 ----~~-~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------------~~~~~~~~h~~~--v~  149 (297)
T 2pm7_B           91 ----QI-AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------------TSPIIIDAHAIG--VN  149 (297)
T ss_dssp             ----CC-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------------BCCEEEECCSSC--EE
T ss_pred             ----EE-EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------------eeeeeeecccCc--cc
Confidence                11 122678899999999997  777777 4799999999976510              123567788866  99


Q ss_pred             eEEEecCC-------------CcEEEEeccCCeEEEEeccCCe----eEEEeecCccceEEEEEcCCC---CeEEEEeCC
Q 021160          156 GVNFFGPN-------------DEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHI---PMFATCGIE  215 (316)
Q Consensus       156 ~~~~~~~~-------------~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~p~~---~~l~s~~~d  215 (316)
                      +++| +|+             +++|++|+.|+.|++||+++++    +...+.+|...|.+++|+|++   ++|++++.|
T Consensus       150 ~~~~-~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          150 SASW-APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             EEEE-CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             eEee-cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence            9999 776             5799999999999999998765    567788999999999999985   789999999


Q ss_pred             CcEEEecCCCCC------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          216 KTVKLWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       216 ~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ++|++||++...      ......|...+..+. |+++++++++++.|+.+++|+....
T Consensus       229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE-ECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             CcEEEEEeCCCCCccceeeeecccCCCcEEEEE-ECCCCCEEEEEcCCCcEEEEEECCC
Confidence            999999987642      111134566665555 8899999999999999999997643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-34  Score=245.83  Aligned_cols=242  Identities=13%  Similarity=0.183  Sum_probs=199.3

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||.+.|++++|+|++ .+|++|+.|++|++||+.+++              ....+ ..|...|.+++|+|++++|+++
T Consensus        63 ~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~--------------~~~~~-~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQ--------------KTHAI-KLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             CCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTE--------------EEEEE-ECCCTTCCCCEECTTSSEEEEC
T ss_pred             cccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--------------cceEE-ecCCCCEEEEEECCCCCEEEEe
Confidence            4799999999999998 899999999999999998876              23333 6788899999999999999885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                       .|+.+++||+.......         ........+.+|...  +.++.| .|+ +..|++|+.|+.|++||+.+++.+.
T Consensus       127 ~~d~~v~iw~~~~~~~~~---------~~~~~~~~~~gh~~~--v~~~~~-~~~~~~~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRD---------GNMPVSRVLTGHKGY--ASSCQY-VPDQETRLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             CSSSCCEEEECCCCSSCC---------CSSTTCCBCCCCSSC--CCCCBC-CSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred             eCCCcEEEEECCCCcccc---------CCccceeeccCCCcc--eEEEEE-ecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence             79999999997541100         011244567888866  999998 554 5679999999999999999999888


Q ss_pred             Ee-----ecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCC-C-CCCCCCCcccceeeeecCCCCceeEEecCCCeE
Q 021160          189 LM-----VGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPT-D-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIM  260 (316)
Q Consensus       189 ~~-----~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  260 (316)
                      .+     .+|...|.+++|+| ++.+|++|+.|++|++||++.. . +..+.+|...+..+. +++++.++++++.|+.+
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~D~~i  273 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK-FFPDGQRFGTGSDDGTC  273 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE-ECTTSSEEEEECSSSCE
T ss_pred             EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE-EecCCCeEEEEcCCCeE
Confidence            77     57889999999987 7889999999999999999743 3 667778888887766 78899999999999999


Q ss_pred             EEEEecccCcce-----------------eEEeecccccccccCCCCeEEEEeccCCC
Q 021160          261 HVLRLQRRQTLA-----------------YRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       261 ~~w~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ++||+++++...                 ...+.|++..+.++..+|.|++||...++
T Consensus       274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred             EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence            999998653221                 12677888899999999999999976554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4e-34  Score=237.17  Aligned_cols=237  Identities=14%  Similarity=0.183  Sum_probs=193.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||.+.|++++|+|+++++|++|+.|++|++|++......         ...... ...+|...|.+++|+|++++|+++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------~~~~~~-~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------FGVPVR-SFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------EEEEEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------ccccce-EEeCCcccEEEEEECCCCCEEEEE
Confidence            4799999999999977689999999999999998743210         000112 237899999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|++|++||+.++                +....+.+|...  |.+++| +|++.+|++|+.|+.|++||++ ++++..
T Consensus        84 s~D~~v~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~s~s~D~~i~vwd~~-~~~~~~  143 (319)
T 3frx_A           84 SWDKTLRLWDVATG----------------ETYQRFVGHKSD--VMSVDI-DKKASMIISGSRDKTIKVWTIK-GQCLAT  143 (319)
T ss_dssp             ETTSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             eCCCEEEEEECCCC----------------CeeEEEccCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence             7999999999988                678889999977  999999 9999999999999999999997 567788


Q ss_pred             eecCccceEEEEEcCCC------CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160          190 MVGDRHVVNQLEPHPHI------PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~------~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                      +.+|...|.+++|+|..      ..|++++.|+.|++||++..+ ...+.+|...+..+. +++++.++++++.|+.|++
T Consensus       144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~sp~g~~l~s~~~dg~i~i  222 (319)
T 3frx_A          144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIML  222 (319)
T ss_dssp             ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEE-ECTTSSEEEEEETTCEEEE
T ss_pred             EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEE-EcCCCCEEEEEeCCCeEEE
Confidence            88999999999999954      479999999999999998876 556677888887666 8889999999999999999


Q ss_pred             EEecccCcce--------e-EEeecccccccccCCCCeEEEEeccC
Q 021160          263 LRLQRRQTLA--------Y-RERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       263 w~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      ||+.+++...        . ..+.|++..++...++ .+.+|++..
T Consensus       223 wd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             EETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred             EECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence            9988753321        1 1567777766665443 366666543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.9e-33  Score=232.35  Aligned_cols=255  Identities=10%  Similarity=0.063  Sum_probs=208.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+......+.....      .+|...|.+++|+|++ ++|++++.|+.|++||+.+++.            
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~------------  131 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTP------------  131 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--------------
T ss_pred             CCeEEEEECCCCCceeeeecccc------cCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCc------------
Confidence            58899999987653322221111      1378899999999998 8999999999999999987651            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ........|...+.+++|+|++++++++ .|+.|++||++++                +....+..|...  +.+++| 
T Consensus       132 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----------------~~~~~~~~~~~~--i~~~~~-  191 (337)
T 1gxr_A          132 -RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-  191 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-
T ss_pred             -ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------ceeeeeecccCc--eEEEEE-
Confidence             1112225678899999999999987774 7999999999887                677788888866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      +|++.++++++.|+.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||++..+...+..|...+..
T Consensus       192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~  270 (337)
T 1gxr_A          192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS  270 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEE
T ss_pred             CCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeE
Confidence            9999999999999999999999999887775 678899999999999999999999999999998886667778777766


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecccCccee---------EEeecccccccccCCCCeEEEEec
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      +. ++++++++++++.|+.+++|++.+++....         ..+.|++..+.....+|.+.+|++
T Consensus       271 ~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          271 LK-FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE-ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE-ECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            66 788899999999999999999887644322         146677777777778888888875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=235.10  Aligned_cols=240  Identities=15%  Similarity=0.233  Sum_probs=183.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccc-cCCCcccEEEEEEccCCCeEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      +|..+|.+++|+|+   +|++|+.|+.|++||+..+...            ....+ ..+|...|.+++|+|++++|+++
T Consensus        12 ~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X           12 LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT------------LIDVLDETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE------------EEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred             cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE------------EEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence            58999999999984   8999999999999999865310            11222 13489999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----Ce
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GK  185 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~----~~  185 (316)
                       .|++|++||+.....         ..........+.+|...  |.+++| +|++++|++|+.|+.|++||+..    .+
T Consensus        77 s~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~h~~~--V~~v~~-sp~g~~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           77 SFDSTVSIWAKEESAD---------RTFEMDLLAIIEGHENE--VKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             ETTSCEEEEEC----------------CCCEEEEEEC----C--EEEEEE-CTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred             eCCCcEEEEEcccCcC---------ccccceeEEEEcCCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence             799999999864310         00011345667888866  999999 99999999999999999999943    35


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC---CCCCCCCCcccceeeeecCCC--CceeEEecCCCeE
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT---DFPPLPDNAEKIMKANKQGRE--DHSRITLTPDVIM  260 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~  260 (316)
                      ++..+.+|...|.+++|+|++.+|++++.|++|++||...+   .+..+.+|...+..+. +.++  +..+++++.|+.+
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECCSSSSCEEEEEETTSCE
T ss_pred             EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE-ecCCCCeeEEEEEeCCCeE
Confidence            67788899999999999999999999999999999998765   2566778888887776 5665  6689999999999


Q ss_pred             EEEEecccC------------------cceeE-EeecccccccccCCCCeEEEEeccCC
Q 021160          261 HVLRLQRRQ------------------TLAYR-ERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       261 ~~w~~~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      ++|++....                  ..++. .+.+. ..+++...+|.|.+|+..++
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEETT
T ss_pred             EEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCCC
Confidence            999986531                  11122 33433 36777888899999997654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-33  Score=257.68  Aligned_cols=256  Identities=17%  Similarity=0.192  Sum_probs=198.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+............      ...+|...|.+++|+|++ ++|++|+.|+.|++||+.+++             
T Consensus       404 D~~i~~W~~~~~~~~~~~~~~------~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~-------------  463 (694)
T 3dm0_A          404 DKSIILWKLTKDDKAYGVAQR------RLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGV-------------  463 (694)
T ss_dssp             TSEEEEEECCCSTTCSCEEEE------EEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE-------------
T ss_pred             CCcEEEEEccCCCcccccccc------eecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc-------------
Confidence            689999999865432111111      112589999999999999 899999999999999999876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +...+ .+|...|.+++|+|++++|+++ .|++|++||.....             .........+|...  |.+++| 
T Consensus       464 -~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-  525 (694)
T 3dm0_A          464 -STRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-------------KYTISEGGEGHRDW--VSCVRF-  525 (694)
T ss_dssp             -EEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-------------EEEECSSTTSCSSC--EEEEEE-
T ss_pred             -ceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-------------ceeeccCCCCCCCc--EEEEEE-
Confidence             33333 6899999999999999988884 79999999986540             00001112356655  999999 


Q ss_pred             cCCC--cEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160          161 GPND--EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  237 (316)
Q Consensus       161 ~~~~--~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  237 (316)
                      +|++  ..+++++.|+.|++||++++++...+.+|.+.|.+++|+|++++|++++.|+.|++||+++++ +..+. +...
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~  604 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSV  604 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSC
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCc
Confidence            8876  589999999999999999999999999999999999999999999999999999999998877 44443 3344


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcce-----------------------------eEEeecccccccccCC
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA-----------------------------YRERRYNAADFESDEE  288 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~  288 (316)
                      +..+ .+++++.++++++ ++.+++||+.++....                             ...++|++..+.++..
T Consensus       605 v~~~-~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~  682 (694)
T 3dm0_A          605 IHAL-CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT  682 (694)
T ss_dssp             EEEE-EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred             EEEE-EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence            4444 4778777666654 5669999987653211                             1257888999999999


Q ss_pred             CCeEEEEecc
Q 021160          289 EGETYLLGFS  298 (316)
Q Consensus       289 ~~~v~~~~~~  298 (316)
                      +|.|.+|++.
T Consensus       683 Dg~i~iW~i~  692 (694)
T 3dm0_A          683 DGVIRVWGIG  692 (694)
T ss_dssp             TSEEEEEEC-
T ss_pred             CCeEEEEecc
Confidence            9999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-33  Score=240.14  Aligned_cols=220  Identities=15%  Similarity=0.223  Sum_probs=180.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+.           +|...|.+++|+|++ .+|++|+.|+.|++||++++++            
T Consensus       144 d~~i~iwd~~~~~~~~~~~-----------~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~------------  199 (393)
T 1erj_A          144 DRLIRIWDIENRKIVMILQ-----------GHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQC------------  199 (393)
T ss_dssp             TSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE------------
T ss_pred             CCeEEEEECCCCcEEEEEc-----------cCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCee------------
Confidence            6899999998765433332           488899999999999 8999999999999999998762            


Q ss_pred             cccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee-------eCCcCCc
Q 021160           82 FCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-------SGHRNSQ  152 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  152 (316)
                        ...+  .+...+.+++|+| ++++++++ .|+.|++||++++                ..+..+       .+|... 
T Consensus       200 --~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~----------------~~~~~~~~~~~~~~~h~~~-  258 (393)
T 1erj_A          200 --SLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG----------------FLVERLDSENESGTGHKDS-  258 (393)
T ss_dssp             --EEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC----------------CEEEEEC------CCCSSC-
T ss_pred             --EEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------cEEEeecccccCCCCCCCC-
Confidence              2222  2456799999999 78888885 7999999999876                343333       467655 


Q ss_pred             eeeeEEEecCCCcEEEEeccCCeEEEEeccCC------------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021160          153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  220 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i  220 (316)
                       |.+++| +|++++|++|+.|+.|++||+++.            .+...+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       259 -v~~v~~-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i  336 (393)
T 1erj_A          259 -VYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF  336 (393)
T ss_dssp             -EEEEEE-CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             -EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence             999999 999999999999999999998753            345677889999999999999999999999999999


Q ss_pred             ecCCCCC-CCCCCCCcccceeeeecC-----CCCceeEEecCCCeEEEEEeccc
Q 021160          221 WAPMPTD-FPPLPDNAEKIMKANKQG-----REDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       221 wd~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ||+.+++ +..+.+|...+..+++..     +++.++++++.|+.+++|++.+.
T Consensus       337 wd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999887 667778888887776432     46789999999999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-33  Score=234.01  Aligned_cols=227  Identities=12%  Similarity=0.119  Sum_probs=177.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||+++.+.......         .+|...|.+++|+|.  + ++|++|+.|++|++||+++++..         
T Consensus        34 D~~v~lwd~~~~~~~~~~~l---------~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~---------   94 (316)
T 3bg1_A           34 DRSVKIFDVRNGGQILIADL---------RGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWE---------   94 (316)
T ss_dssp             TTEEEEEEEETTEEEEEEEE---------ECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCC---------
T ss_pred             CCeEEEEEecCCCcEEEEEE---------cCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcce---------
Confidence            68999999987643222222         258999999999863  5 89999999999999999876411         


Q ss_pred             eecccccccCCCcccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                         ... ...+|...|.+++|+|+  +.+|+++ .|++|++||++....             ......+.+|...  +.+
T Consensus        95 ---~~~-~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------------~~~~~~~~~h~~~--v~~  155 (316)
T 3bg1_A           95 ---KSH-EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------------WEVKKINNAHTIG--CNA  155 (316)
T ss_dssp             ---EEE-EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-------------EEECCBTTSSSSC--BCC
T ss_pred             ---EEE-EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------------cceeeeeccccCC--cce
Confidence               111 22678999999999998  6778875 799999999976410             0113445667755  899


Q ss_pred             EEEecCC-----------------CcEEEEeccCCeEEEEeccCC---eeEEEeecCccceEEEEEcCCC----CeEEEE
Q 021160          157 VNFFGPN-----------------DEYVMSGSDCGHLFIWKKKGG---KLVRLMVGDRHVVNQLEPHPHI----PMFATC  212 (316)
Q Consensus       157 ~~~~~~~-----------------~~~l~~~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~p~~----~~l~s~  212 (316)
                      ++| +|+                 +.+|++|+.|+.|++||++.+   +++..+.+|...|.+++|+|++    ++|+++
T Consensus       156 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          156 VSW-APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CEE-CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             EEE-ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            998 776                 478999999999999999755   4677788999999999999986    789999


Q ss_pred             eCCCcEEEecCCCCC-----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          213 GIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       213 ~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +.|++|++|++....     ...+..|...+..++ |++++.++++++.|+.+++|+....
T Consensus       235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~-~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVS-WSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEE-ECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEE-EcCCCCEEEEEcCCCeEEEEEECCC
Confidence            999999999987631     223445666676666 8899999999999999999997643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6e-34  Score=235.80  Aligned_cols=236  Identities=16%  Similarity=0.207  Sum_probs=187.1

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC--CCeEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  108 (316)
                      .+|...|++++|+|++ ++|++|+.|++|++||+.+++..            .... ..+|...|.+++|+++  +++|+
T Consensus        10 ~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~------------~~~~-l~gH~~~V~~v~~~~~~~~~~l~   75 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQI------------LIAD-LRGHEGPVWQVAWAHPMYGNILA   75 (316)
T ss_dssp             ----CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEE------------EEEE-EECCSSCEEEEEECCGGGSSCEE
T ss_pred             ccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcE------------EEEE-EcCCCccEEEEEeCCCCCCCEEE
Confidence            3699999999999999 89999999999999999876410            1122 2789999999999863  77787


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccCCe
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      ++ .|++|++||++++.              ......+.+|...  |.+++| +|+  +.+|++|+.|+.|++||++.+.
T Consensus        76 s~s~D~~v~iWd~~~~~--------------~~~~~~~~~h~~~--V~~v~~-~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGT--------------WEKSHEHAGHDSS--VNSVCW-APHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             EEETTSCEEEECCSSSC--------------CCEEEEECCCSSC--CCEEEE-CCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             EEECCCEEEEEECCCCc--------------ceEEEEccCCCCc--eEEEEE-CCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            74 79999999998751              0234556778866  999999 887  7899999999999999998763


Q ss_pred             e---EEEeecCccceEEEEEcCC-----------------CCeEEEEeCCCcEEEecCCCC----CCCCCCCCcccceee
Q 021160          186 L---VRLMVGDRHVVNQLEPHPH-----------------IPMFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKA  241 (316)
Q Consensus       186 ~---~~~~~~~~~~v~~~~~~p~-----------------~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~  241 (316)
                      .   ...+.+|...|.+++|+|+                 +++|++++.|+.|++||++..    ....+.+|...+..+
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred             CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence            2   3445679999999999997                 468999999999999999754    255677898888777


Q ss_pred             eecCCCC----ceeEEecCCCeEEEEEeccc-------------CcceeE-EeecccccccccCCCCeEEEEecc
Q 021160          242 NKQGRED----HSRITLTPDVIMHVLRLQRR-------------QTLAYR-ERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       242 ~~~~~~~----~~~~s~~~d~~~~~w~~~~~-------------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      . +++++    .++++++.|+.+++|++...             ...++. .+.|++..+++...++.|.+|+..
T Consensus       219 ~-~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          219 A-WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             E-CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             E-ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            7 66654    78999999999999998752             111222 678889999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-32  Score=230.07  Aligned_cols=240  Identities=14%  Similarity=0.174  Sum_probs=190.2

Q ss_pred             CCCccceEEEEE-----CC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC
Q 021160           31 PMNSIRLNAIVI-----DP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS  104 (316)
Q Consensus        31 ~gh~~~v~~~~~-----~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  104 (316)
                      .||...|++++|     ++ ++ .+|++|+.|++|++||+...+..       .... .......+|...|.+++|+|++
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~-------~~~~-~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQN-------GYFG-IPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCS-------SBSE-EEEEEECCCSSCEEEEEECSST
T ss_pred             ccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcc-------cccc-cccchhccCCCceEEEEECCCC
Confidence            369999999999     76 66 89999999999999999765310       0000 1122237899999999999999


Q ss_pred             CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC
Q 021160          105 ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       105 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~  183 (316)
                      .+++++ .|++|++||++++                +....+.+|...  |.+++| +|++++|++++.|+.|++||+..
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~----------------~~~~~~~~h~~~--v~~v~~-sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTG----------------TTYKRFVGHQSE--VYSVAF-SPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSS----------------CEEEEEECCCSC--EEEEEE-CSSTTEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEcCCCcEEEEECCCC----------------cEEEEEcCCCCc--EEEEEE-CCCCCEEEEEcCCCEEEEEeccC
Confidence            988885 7999999999988                677889999976  999999 99999999999999999999984


Q ss_pred             CeeEEEee---cCccceEEEEEcCCC----------CeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCce
Q 021160          184 GKLVRLMV---GDRHVVNQLEPHPHI----------PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS  250 (316)
Q Consensus       184 ~~~~~~~~---~~~~~v~~~~~~p~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (316)
                       +......   .|...|.+++|+|++          ++|++++.|+.|++||........+.+|...+..+. +++++.+
T Consensus       150 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~-~s~~g~~  227 (343)
T 2xzm_R          150 -ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS-ISPNGKY  227 (343)
T ss_dssp             -CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEE-ECTTSSE
T ss_pred             -CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEE-ECCCCCE
Confidence             3333333   688899999999987          689999999999999965444556667888776666 8899999


Q ss_pred             eEEecCCCeEEEEEecccCcc---------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          251 RITLTPDVIMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       251 ~~s~~~d~~~~~w~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +++++.|+.+++||+......         +. ..+.|+...++.+ .++.+.+|++..+.
T Consensus       228 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          228 IATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS  287 (343)
T ss_dssp             EEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred             EEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence            999999999999998432111         11 2577777766654 35568999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.8e-33  Score=240.59  Aligned_cols=222  Identities=11%  Similarity=0.105  Sum_probs=177.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+           .+|...|++++|+|++ .+|++|+.|+.|++||+++++             
T Consensus       118 dg~i~iwd~~~~~~~~~~-----------~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~-------------  172 (420)
T 3vl1_A          118 EGDIKVLDSNFNLQREID-----------QAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS-------------  172 (420)
T ss_dssp             TSCEEEECTTSCEEEEET-----------TSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------------
T ss_pred             CCCEEEEeCCCcceeeec-----------ccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc-------------
Confidence            588999998765432211           2489999999999998 899999999999999999876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc---CC------
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NS------  151 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------  151 (316)
                       ....+ .+|...|.+++|+|++++|+++ .|+.|++||++++                +....+..+.   ..      
T Consensus       173 -~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          173 -NPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG----------------TTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             -CCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT----------------EEEEEECBTTBTTCCEEEEEE
T ss_pred             -CceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC----------------ceeEEeecCCCCCCCccEEEE
Confidence             33333 6789999999999999988874 7999999999887                4444444321   11      


Q ss_pred             -------------ceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCC-eEEEEeCCC
Q 021160          152 -------------QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP-MFATCGIEK  216 (316)
Q Consensus       152 -------------~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~-~l~s~~~d~  216 (316)
                                   ..+.+++| +|++.+|++|+.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.||
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  313 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG  313 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCS-SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ecCCcceeeecccCcccceEE-cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence                         22556666 8899999999999999999999988777765 5788999999999999 899999999


Q ss_pred             cEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          217 TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       217 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .|++||++++.  +..+..|....+...++ +++.++++++.|+.+++|++...
T Consensus       314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          314 MLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             eEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            99999998864  45555544444455434 46789999999999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-33  Score=243.04  Aligned_cols=256  Identities=14%  Similarity=0.080  Sum_probs=186.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+..         .||.+.|++++|+|.++.+|++|+.||+|++||++++...           
T Consensus       141 dg~i~lWd~~~~~~~~~~~~---------~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-----------  200 (435)
T 4e54_B          141 GGDIMLWNFGIKDKPTFIKG---------IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-----------  200 (435)
T ss_dssp             TSCEEEECSSCCSCCEEECC---------CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-----------
T ss_pred             CCEEEEEECCCCCceeEEEc---------cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-----------
Confidence            68999999987765444432         2689999999999965589999999999999999865421           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        .......+...+.+++|+|++++|+++ .|+.|++||++..                 .+..+.+|...  |.+++| 
T Consensus       201 --~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----------------~~~~~~~h~~~--v~~v~~-  258 (435)
T 4e54_B          201 --VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----------------ELWNLRMHKKK--VTHVAL-  258 (435)
T ss_dssp             --EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----------------BCCCSBCCSSC--EEEEEE-
T ss_pred             --EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----------------eeEEEecccce--EEeeee-
Confidence              111113345567899999999988885 7999999998764                 56678888866  999999 


Q ss_pred             cCCCc-EEEEeccCCeEEEEeccCCeeEEE---eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCc
Q 021160          161 GPNDE-YVMSGSDCGHLFIWKKKGGKLVRL---MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA  235 (316)
Q Consensus       161 ~~~~~-~l~~~~~dg~v~~wd~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~  235 (316)
                      +|++. ++++|+.|+.|++||+++.+....   ..+|...|++++|+|++++|++++.|+.|++||+.... ...+..|.
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            78765 788999999999999987765433   35789999999999999999999999999999998765 22222221


Q ss_pred             c------cceeeeecCCCCceeEEe------------cCCCeEEEEEecccCccee------------EEeecccccccc
Q 021160          236 E------KIMKANKQGREDHSRITL------------TPDVIMHVLRLQRRQTLAY------------RERRYNAADFES  285 (316)
Q Consensus       236 ~------~~~~~~~~~~~~~~~~s~------------~~d~~~~~w~~~~~~~~~~------------~~~~~~~~~~~~  285 (316)
                      .      ..+... +.+++..++++            ..++.|++|+..+++....            ..+.|++..+++
T Consensus       339 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las  417 (435)
T 4e54_B          339 HRHFQHLTPIKAA-WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS  417 (435)
T ss_dssp             CCCCSSSCCCBCE-ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred             ccccccceeEEEE-EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence            1      111222 33333333333            2346799999877543321            147788888887


Q ss_pred             cCCCCeEEEEeccCCC
Q 021160          286 DEEEGETYLLGFSDSD  301 (316)
Q Consensus       286 ~~~~~~v~~~~~~~~~  301 (316)
                      +. ++.|.+|+..++.
T Consensus       418 g~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          418 AM-GYHILIWSQQEAR  432 (435)
T ss_dssp             EC-SSEEEECCCC---
T ss_pred             Ec-CCcEEEEECCcCe
Confidence            65 5689999987764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.8e-33  Score=237.51  Aligned_cols=251  Identities=15%  Similarity=0.096  Sum_probs=200.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+..           | ..+....|+|++ ++|++|+.||.|++||+.+++             
T Consensus        77 d~~v~i~d~~~~~~~~~~~~-----------~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-------------  130 (420)
T 3vl1_A           77 DGHDFLFNTIIRDGSKMLKR-----------A-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNL-------------  130 (420)
T ss_dssp             TTEEEEEECCSEETTTTSCS-----------C-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCE-------------
T ss_pred             CCcEEEEEecccceeeEEec-----------C-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcc-------------
Confidence            57899999877654332221           2 334555788988 899999999999999998775             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .. ....+|...|.+++|+|++++|+++ .|+.|++||+.++                +....+.+|...  |.+++| 
T Consensus       131 -~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----------------~~~~~~~~h~~~--v~~~~~-  189 (420)
T 3vl1_A          131 -QR-EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----------------SNPRTLIGHRAT--VTDIAI-  189 (420)
T ss_dssp             -EE-EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----------------CCCEEEECCSSC--EEEEEE-
T ss_pred             -ee-eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------cCceEEcCCCCc--EEEEEE-
Confidence             22 2236899999999999999988885 7999999999987                678888999876  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecC---c---------------------cceEEEEEcCCCCeEEEEeCCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD---R---------------------HVVNQLEPHPHIPMFATCGIEK  216 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~---~---------------------~~v~~~~~~p~~~~l~s~~~d~  216 (316)
                      +|++.+|++++.|+.|++||+++++.+..+..|   .                     ..+.+++|+|++++|++++.||
T Consensus       190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            899999999999999999999999998888753   2                     3455566789999999999999


Q ss_pred             cEEEecCCCCC-CCCC-CCCcccceeeeecCCCCc-eeEEecCCCeEEEEEecccCccee-----------EEeeccccc
Q 021160          217 TVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAY-----------RERRYNAAD  282 (316)
Q Consensus       217 ~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~~~-----------~~~~~~~~~  282 (316)
                      .|++||++.++ ...+ ..|...+..+. +++++. ++++++.|+.+++||+.+.+.+..           ....++...
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  348 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPSKFTCSCNSLT-VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGAL  348 (420)
T ss_dssp             CEEEEETTTCCEEEEECCTTSSCEEEEE-ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEE
T ss_pred             eEEEEECCCCceeEEcccccCCCceeEE-EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCE
Confidence            99999998876 3333 34666666666 677776 999999999999999987643211           124445667


Q ss_pred             ccccCCCCeEEEEeccCC
Q 021160          283 FESDEEEGETYLLGFSDS  300 (316)
Q Consensus       283 ~~~~~~~~~v~~~~~~~~  300 (316)
                      +.+...++.|.+|++.+.
T Consensus       349 l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          349 FVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEETTTEEEEEEEECCT
T ss_pred             EEEecCCccEEEEeccCC
Confidence            888889999999998874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=230.68  Aligned_cols=259  Identities=9%  Similarity=0.093  Sum_probs=202.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCC--CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~--~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||+.+.+........          |...|.+++|+|++  ..+|++|+.||.|++||+.+++           
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------  101 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIE----------KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------  101 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEE----------ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------
T ss_pred             CcEEEEEeCCCCcccceeeec----------ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------
Confidence            689999999987765444432          78899999999983  2899999999999999999775           


Q ss_pred             eecccccccCCCcccEEEEEE------ccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC--
Q 021160           80 DTFCPRHLIGKNNIHITGLAY------SNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--  150 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  150 (316)
                         .......+|...|.++.|      +|++++|+++ .|+.|++||++.+.               .....+..+..  
T Consensus       102 ---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~  163 (357)
T 3i2n_A          102 ---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD---------------DPVANMEPVQGEN  163 (357)
T ss_dssp             ---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS---------------SCSEEECCCTTSC
T ss_pred             ---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC---------------CcceeccccCCCC
Confidence               122223688999999955      6788888875 79999999998872               25566655443  


Q ss_pred             CceeeeEEE---ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC---CCCeEEEEeCCCcEEEecCC
Q 021160          151 SQTVKGVNF---FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP---HIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       151 ~~~i~~~~~---~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~s~~~d~~i~iwd~~  224 (316)
                      ...+.+++|   +++++.++++++.||.|++||+++++.... ..|...|.+++|+|   ++.+|++++.|+.|++||++
T Consensus       164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            124888883   279999999999999999999999987544 56888999999999   89999999999999999998


Q ss_pred             CCC-CCCCC-----CCcccceeeeecCCCCc-eeEEecCCCeEEEEEecccCcc--------------------------
Q 021160          225 PTD-FPPLP-----DNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTL--------------------------  271 (316)
Q Consensus       225 ~~~-~~~~~-----~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~--------------------------  271 (316)
                      ... ...+.     +|...+..+. +++++. ++++++.|+.+++|++......                          
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  321 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVR-HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST  321 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEE-EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred             CCCcccceeeeccCCCcCCEEEEE-ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence            765 33333     6777776666 677766 8999999999999999753221                          


Q ss_pred             --ee-EEeeccccccc-ccCCCCeEEEEeccCCC
Q 021160          272 --AY-RERRYNAADFE-SDEEEGETYLLGFSDSD  301 (316)
Q Consensus       272 --~~-~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  301 (316)
                        +. ..+.|++..+. ++..++.|.+|++...+
T Consensus       322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence              11 26788888887 78889999999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.8e-33  Score=247.72  Aligned_cols=244  Identities=18%  Similarity=0.285  Sum_probs=199.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+..... ..+           .+|...|.+++|+|++ .++++|+.|+.|++||.. ++             
T Consensus       324 d~~i~~w~~~~~~~-~~~-----------~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~-~~-------------  376 (577)
T 2ymu_A          324 DKTVKLWNRNGQHL-QTL-----------TGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN-GQ-------------  376 (577)
T ss_dssp             TSCEEEEETTSCEE-EEE-----------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-CC-------------
T ss_pred             CCeEEEEeCCCCee-EEE-----------eCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC-CC-------------
Confidence            57899999754322 222           1478899999999999 899999999999999964 33             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ....+ .+|...|.+++|+|++++|+++ .|+.|++||...                 +....+.+|...  |.+++| 
T Consensus       377 -~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----------------~~~~~~~~~~~~--v~~~~~-  434 (577)
T 2ymu_A          377 -LLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----------------QLLQTLTGHSSS--VWGVAF-  434 (577)
T ss_dssp             -EEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -EEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----------------CEEEEecCCCCC--eEEEEE-
Confidence             22222 6788999999999999988885 799999999644                 467788889866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      +|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.....+..+.+|...+..
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~  513 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG  513 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEE
Confidence            999999999999999999996 5778889999999999999999999999999999999999766557778888888877


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecccC--------ccee-EEeecccccccccCCCCeEEEEe
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRRQ--------TLAY-RERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                      ++ ++++++++++++.|+.|++||.....        ..+. ..+.|++..+.+...|+.|.+||
T Consensus       514 l~-~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          514 VA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EE-ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EE-EcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            66 88999999999999999999964321        1111 15677777777777777777775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-32  Score=232.60  Aligned_cols=253  Identities=13%  Similarity=0.201  Sum_probs=205.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+...          |...|.+++|+|++ .+|++|+.||.|++||+.+++             
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~----------~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~-------------  167 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETD----------ESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQT-------------  167 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECC----------TTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC-------------
T ss_pred             CCeEEEeeCCCCcEeEeeecC----------CCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCe-------------
Confidence            688999999888766555543          67899999999998 899999999999999999876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ....+ .+|...|.+++|+  ++++++ +.|+.|++||++...               .....+.+|...  |.+++| 
T Consensus       168 -~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~--v~~~~~-  225 (401)
T 4aez_A          168 -KLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN---------------HQIGTLQGHSSE--VCGLAW-  225 (401)
T ss_dssp             -EEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -EEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc---------------ceeeEEcCCCCC--eeEEEE-
Confidence             23333 6889999999994  467776 579999999998541               456778888866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEe--CCCcEEEecCCCCC-CCCCCCCcc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~--~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      +|++.+|++|+.|+.|++||+++++.+..+..|...|.+++|+|++.. +++++  .|+.|++||+.+++ ...+ .+..
T Consensus       226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~  304 (401)
T 4aez_A          226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGS  304 (401)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSS
T ss_pred             cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCC
Confidence            899999999999999999999999999999999999999999997755 66654  79999999999887 3333 3445


Q ss_pred             cceeeeecCCCCceeEE--ecCCCeEEEEEecccCcce------------eEEeecccccccccCCCCeEEEEeccCCCC
Q 021160          237 KIMKANKQGREDHSRIT--LTPDVIMHVLRLQRRQTLA------------YRERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s--~~~d~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .+..+. +++++..+++  ++.|+.+++|++.++....            ...+.|++..+.+...+|.|.+|++.+++.
T Consensus       305 ~v~~~~-~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          305 QVTSLI-WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             CEEEEE-ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             cEEEEE-ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            555555 7888888888  5589999999988742211            126788888999999999999999988764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-32  Score=238.00  Aligned_cols=205  Identities=14%  Similarity=0.163  Sum_probs=167.1

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCeEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~  110 (316)
                      +|...|++++|+|.++++||+|+.||.|+|||+.+++..            .. ....+|...|++++|+| ++++|+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------~~-~~~~gH~~~V~~l~f~p~~~~~l~s~  183 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------TF-IKGIGAGGSITGLKFNPLNTNQFYAS  183 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------EE-ECCCSSSCCCCEEEECSSCTTEEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------eE-EEccCCCCCEEEEEEeCCCCCEEEEE
Confidence            478889999999977689999999999999999876521            11 11268999999999998 56788885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                       .|++|++||+++.                 ....+. .+.....+.+++| +|++.+|++|+.||.|++||++ ++.+.
T Consensus       184 s~D~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~~wd~~-~~~~~  244 (435)
T 4e54_B          184 SMEGTTRLQDFKGN-----------------ILRVFASSDTINIWFCSLDV-SASSRMVVTGDNVGNVILLNMD-GKELW  244 (435)
T ss_dssp             CSSSCEEEEETTSC-----------------EEEEEECCSSCSCCCCCEEE-ETTTTEEEEECSSSBEEEEESS-SCBCC
T ss_pred             eCCCEEEEeeccCC-----------------ceeEEeccCCCCccEEEEEE-CCCCCEEEEEeCCCcEeeeccC-cceeE
Confidence             7999999999765                 233333 3333334789999 9999999999999999999997 55677


Q ss_pred             EeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          189 LMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      .+.+|...|.+++|+|+++ +|++++.|+.|++||++...    +....+|...+..+. +++++.++++++.|+.|++|
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~-~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC-FSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC-BCTTSSEEEEEESSSCEEEE
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccccee-ECCCCCeeEEEcCCCEEEEE
Confidence            8889999999999999987 58899999999999998765    223356777776665 88999999999999999999


Q ss_pred             EecccC
Q 021160          264 RLQRRQ  269 (316)
Q Consensus       264 ~~~~~~  269 (316)
                      ++.+..
T Consensus       324 d~~~~~  329 (435)
T 4e54_B          324 SASQWD  329 (435)
T ss_dssp             ESSSSS
T ss_pred             ECCCCc
Confidence            998754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-32  Score=232.68  Aligned_cols=252  Identities=11%  Similarity=0.049  Sum_probs=193.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+..         .+|...|.+++|+|++..+|++++.|+.|++||+++...          . 
T Consensus        95 dg~i~iwd~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~-  154 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQG---------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI----------Q-  154 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECC---------CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE----------E-
T ss_pred             CCeEEEEeCCCcccceeeec---------CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce----------E-
Confidence            58999999988766544432         148899999999994338999999999999999986431          1 


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        .......|...|.+++|+|++++|+++ .|+.|++||++.                 .....+.+|...  |.+++| 
T Consensus       155 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----------------~~~~~~~~h~~~--v~~~~~-  212 (383)
T 3ei3_B          155 --VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----------------HEIFKEKLHKAK--VTHAEF-  212 (383)
T ss_dssp             --EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----------------CEEEEEECSSSC--EEEEEE-
T ss_pred             --EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----------------CEEEEeccCCCc--EEEEEE-
Confidence              111124456889999999999988885 799999999953                 477888888866  999999 


Q ss_pred             cCCCc-EEEEeccCCeEEEEeccC----CeeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCCC
Q 021160          161 GPNDE-YVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPD  233 (316)
Q Consensus       161 ~~~~~-~l~~~~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~  233 (316)
                      +|++. ++++++.|+.|++||+++    ++++..+ +|...|.+++|+| ++++|++++.|+.|++||+++.. ...+..
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  291 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII  291 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence            89998 999999999999999997    6666666 6999999999999 99999999999999999998765 333332


Q ss_pred             Cc-------ccce---------eeeecCCCCceeEEecCCCeEEEEEecccCcce-----------eE-Eeecccccccc
Q 021160          234 NA-------EKIM---------KANKQGREDHSRITLTPDVIMHVLRLQRRQTLA-----------YR-ERRYNAADFES  285 (316)
Q Consensus       234 ~~-------~~~~---------~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~-----------~~-~~~~~~~~~~~  285 (316)
                      |.       ..+.         ....+++++.+  +++.|+.+++||+.+++...           .. .+.|++..+++
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s  369 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS  369 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence            22       1111         11224455555  77789999999987653321           12 57778888887


Q ss_pred             cCCCCeEEEEeccC
Q 021160          286 DEEEGETYLLGFSD  299 (316)
Q Consensus       286 ~~~~~~v~~~~~~~  299 (316)
                      +. ++.|.+|++.+
T Consensus       370 ~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          370 GM-GFNILIWNRED  382 (383)
T ss_dssp             EE-TTEEEEEECC-
T ss_pred             ec-CCcEEEEecCC
Confidence            75 78899998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.6e-32  Score=230.31  Aligned_cols=227  Identities=9%  Similarity=0.056  Sum_probs=177.4

Q ss_pred             ceeeEEEEeeCCCcce-EEEeccccccccCCCCccceEEEEECCCCCcEEEE--EecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            2 VLFNMLFDLRSDSATR-LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~-~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~--g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      ++.+++|++....... .......   .....+...+.+++|+|+| +++++  ++.|++|++||+++++          
T Consensus       103 d~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~----------  168 (365)
T 4h5i_A          103 NKHLRKFKYDKVNDQLEFLTSVDF---DASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLT----------  168 (365)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEECS---SCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTE----------
T ss_pred             CCcEEEEEecCCCceEEEeeeece---eecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCc----------
Confidence            4679999998765322 2221111   1112345678999999999 67654  4578999999999886          


Q ss_pred             ceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcc--eeeCCcCCceeee
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--VYSGHRNSQTVKG  156 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~  156 (316)
                          +...+  .|...|.+++|+|+|++++++.++.+.+|+..++                ....  ...+|..  .+.+
T Consensus       169 ----~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~v~~  224 (365)
T 4h5i_A          169 ----EKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG----------------SCIARKTDFDKNW--SLSK  224 (365)
T ss_dssp             ----EEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTC----------------CEEEEECCCCTTE--EEEE
T ss_pred             ----EEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEeccC----------------cceeeeecCCCCC--CEEE
Confidence                22222  3667899999999999999988888888888776                3322  2334553  4999


Q ss_pred             EEEecCCCcEEEEeccCC----eEEEEeccCCee----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-
Q 021160          157 VNFFGPNDEYVMSGSDCG----HLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-  227 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg----~v~~wd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-  227 (316)
                      ++| +|++.++++++.++    .+++|++.....    ...+.+|...|++++|+|++++||+|+.|++|+|||+++++ 
T Consensus       225 v~f-spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          225 INF-IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             EEE-EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEE-cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence            999 99999999999887    688999887654    34567899999999999999999999999999999999887 


Q ss_pred             CCC-CCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          228 FPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       228 ~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +.+ +.+|...|..++ |+++++++++++.|++|++|++...
T Consensus       304 ~~~~~~gH~~~V~~v~-fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          304 SKIFKQAHSFAITEVT-ISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSSSSCEEEEE-ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEecCcccCCEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            444 578999887777 8999999999999999999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=233.75  Aligned_cols=269  Identities=12%  Similarity=0.127  Sum_probs=207.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+....+.+.         ..+|...|++++|+|++ .+|++|+.||.|++||+.+....     .     
T Consensus        44 d~~v~iw~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~-----~-----  103 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIA---------SLQVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNA-----I-----  103 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSC---------CCCCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSC-----C-----
T ss_pred             CCeEEEEEccCCCCCcEEE---------EEecCCceEEEEECCCC-CeEEEEccCCeEEEeeccccccc-----c-----
Confidence            5689999998765321111         11378899999999998 89999999999999999872100     0     


Q ss_pred             cccccccCCCcccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       .......+|...|.+++|+|+ +++|+++ .|+.|++||+.+.......      . .......+..|...  +.+++|
T Consensus       104 -~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~-~~~~~~~~~~~~~~--v~~~~~  173 (416)
T 2pm9_A          104 -NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN------Y-TPLTPGQSMSSVDE--VISLAW  173 (416)
T ss_dssp             -CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT------C-CCBCCCCSCCSSCC--CCEEEE
T ss_pred             -cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc------c-cccccccccCCCCC--eeEEEe
Confidence             112222678999999999998 7788875 7999999999876200000      0 00011223556655  999999


Q ss_pred             ecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecC------ccceEEEEEcCCC-CeEEEEeCCC---cEEEecCCCCC-
Q 021160          160 FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------RHVVNQLEPHPHI-PMFATCGIEK---TVKLWAPMPTD-  227 (316)
Q Consensus       160 ~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~------~~~v~~~~~~p~~-~~l~s~~~d~---~i~iwd~~~~~-  227 (316)
                       +|+ +.++++++.|+.|++||+++++.+..+..|      ...|.+++|+|++ .++++++.|+   .|++||++... 
T Consensus       174 -~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~  252 (416)
T 2pm9_A          174 -NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT  252 (416)
T ss_dssp             -CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred             -CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence             888 789999999999999999999999888776      7889999999997 5799999998   99999999853 


Q ss_pred             -CCCCC-CCcccceeeeecCC-CCceeEEecCCCeEEEEEecccCccee----------EEeeccc-ccccccCCCCeEE
Q 021160          228 -FPPLP-DNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNA-ADFESDEEEGETY  293 (316)
Q Consensus       228 -~~~~~-~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~v~  293 (316)
                       ...+. +|...+..+. +++ ++.++++++.|+.+++|++.+++....          ..+.|+. ..+.+...++.|.
T Consensus       253 ~~~~~~~~~~~~v~~~~-~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          253 PLQTLNQGHQKGILSLD-WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             CSBCCCSCCSSCEEEEE-ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             CcEEeecCccCceeEEE-eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence             56666 7888887777 565 899999999999999999887543321          2577777 7888899999999


Q ss_pred             EEeccCCCC
Q 021160          294 LLGFSDSDA  302 (316)
Q Consensus       294 ~~~~~~~~~  302 (316)
                      +|++.....
T Consensus       332 iw~~~~~~~  340 (416)
T 2pm9_A          332 VQTLQNLTN  340 (416)
T ss_dssp             EEESCCCCC
T ss_pred             EEEccCCCC
Confidence            999987664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-32  Score=233.82  Aligned_cols=274  Identities=12%  Similarity=0.163  Sum_probs=204.0

Q ss_pred             ceeeEEEEe----eCCCc------ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC
Q 021160            2 VLFNMLFDL----RSDSA------TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS   71 (316)
Q Consensus         2 ~g~v~vwd~----~~~~~------~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~   71 (316)
                      +|.|++||+    .+.+.      ...+. +.........+|...|++++|+|++ .+|++|+.||.|++||. +++   
T Consensus        67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~-~~~---  140 (425)
T 1r5m_A           67 NSVARLARIVETDQEGKKYWKLTIIAELR-HPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVENGELRLWNK-TGA---  140 (425)
T ss_dssp             BTEEEEEEEEEC------CEEEEEEEEEE-CCCCCC------CBCEEEEEECTTS-SEEEEEETTSCEEEEET-TSC---
T ss_pred             CceEEEEEEecccCCcccccccccccccc-ccccccccccCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeC-CCC---
Confidence            689999999    76652      22221 1111111112468899999999998 89999999999999993 333   


Q ss_pred             CCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCC-----------------------
Q 021160           72 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPS-----------------------  127 (316)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~-----------------------  127 (316)
                                 ....+ ..|...|.+++|+|++++|++ +.|+.|++||+.++....                       
T Consensus       141 -----------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (425)
T 1r5m_A          141 -----------LLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL  208 (425)
T ss_dssp             -----------EEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCC
T ss_pred             -----------eeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcce
Confidence                       22222 678999999999999997777 579999999997653100                       


Q ss_pred             -----------------CccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          128 -----------------PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       128 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                                       ...+..+++........+..|...  +.+++| +|++.+|++++.|+.|++||+.+++.+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  285 (425)
T 1r5m_A          209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP--ISVLEF-NDTNKLLLSASDDGTLRIWHGGNGNSQNCF  285 (425)
T ss_dssp             BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEECSSSBSCSEEE
T ss_pred             eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc--eEEEEE-CCCCCEEEEEcCCCEEEEEECCCCccceEe
Confidence                             012223334455566677777766  999999 899999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ..|...|.+++|+|++ .+++++.|+.|++||++.++ +..+..|...+..+. +++++.++++++.|+.+++|++.+..
T Consensus       286 ~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          286 YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR-ISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE-ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE-EcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9999999999999999 99999999999999998876 555556666665555 78899999999999999999998664


Q ss_pred             --------------------c-----------cee-EEeecccccccccCCCCeEEEEecc
Q 021160          270 --------------------T-----------LAY-RERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       270 --------------------~-----------~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                                          .           .+. ..+.|++..+++...+|.|++|++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                                1           111 1456666677777777777777764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-33  Score=244.13  Aligned_cols=234  Identities=10%  Similarity=0.056  Sum_probs=182.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCC-----CcEEEEEecCCcEEEEeCcCCcccCC--CC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-----PNYFAVGGSDEYARVYDIRKCHWYSP--IS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-----~~~l~~g~~dg~v~~wd~~~~~~~~~--~~   74 (316)
                      +|.|+|||+.+.+....... ..      .+|.+.|.+++|+|++     ..+||+++.||+|++||+.+++....  ..
T Consensus       182 D~tI~iWd~~~~~~~~~~~~-~l------~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQ-TI------VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEE-EE------EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             CceEEEEEccCCCCCceEEE-EE------EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            68999999987664321110 00      1257789999999961     26999999999999999987642100  00


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                      ...+.      ....+|...|++++|++++ .|++ +.||+|++||++++.               .+...+.+|...  
T Consensus       255 ~~~p~------~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---------------~~~~~~~~H~~~--  310 (524)
T 2j04_B          255 CEKPS------LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---------------VPSFYDQVHDSY--  310 (524)
T ss_dssp             CCSCS------EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---------------SCSEEEECSSSC--
T ss_pred             ecCce------EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---------------CceEEeeccccc--
Confidence            00111      1226788999999999875 5666 579999999998651               244568889876  


Q ss_pred             eeeE--EEecCCC-cEEEEeccCCeEEEEeccCCeeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-
Q 021160          154 VKGV--NFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-  227 (316)
Q Consensus       154 i~~~--~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-  227 (316)
                      |.++  +| ++++ .+|++|+.|++|++||+++++++..+.+|..  .|.+++|+|+++.+++++.|++|++||++... 
T Consensus       311 V~sv~~~~-s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~  389 (524)
T 2j04_B          311 ILSVSTAY-SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA  389 (524)
T ss_dssp             EEEEEEEC-CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC
T ss_pred             EEEEEEEc-CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc
Confidence            9999  45 8887 8999999999999999998887777777653  57899999999999999999999999999876 


Q ss_pred             CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          228 FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ...+.+|...+..++ +++++..+++++.|+++++|++..+
T Consensus       390 ~~~l~gH~~~V~sva-~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          390 VHPLVSRETTITAIG-VSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CEEEEECSSCEEEEE-CCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ceeeecCCCceEEEE-eCCCCCeEEEEECCCEEEEEechHh
Confidence            566778988888777 7899999999999999999997654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.5e-33  Score=235.31  Aligned_cols=254  Identities=14%  Similarity=0.136  Sum_probs=199.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC---cEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP---NYFAVGGSDEYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~---~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      +|.|++||+.+.+....+......      .|...|++++|+|++.   .+|++|+.||.|++||+.+++          
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----------  106 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDA------DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ----------  106 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECS------CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC----------
T ss_pred             CCEEEEEEcCCCcEEEeeeecccc------CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce----------
Confidence            468999999977765555543322      2678899999999831   699999999999999999876          


Q ss_pred             ceecccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee---eCCcCCce
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SGHRNSQT  153 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  153 (316)
                          ....+ .+|...|.+++|+| ++++|+++ .|+.|++||++++                +....+   .+|...  
T Consensus       107 ----~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~~--  163 (366)
T 3k26_A          107 ----CIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----------------TLVAIFGGVEGHRDE--  163 (366)
T ss_dssp             ----EEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----------------EEEEEECSTTSCSSC--
T ss_pred             ----Eeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----------------eEEEEecccccccCc--
Confidence                22233 67899999999999 88888885 7999999999887                556666   567755  


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee----------------------------cCccceEEEEEcCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV----------------------------GDRHVVNQLEPHPH  205 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~----------------------------~~~~~v~~~~~~p~  205 (316)
                      |.+++| +|++.+|++++.||.|++||+++++....+.                            .|...|.+++|+  
T Consensus       164 v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          164 VLSADY-DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             EEEEEE-CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             eeEEEE-CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            999999 9999999999999999999998776543333                            388999999998  


Q ss_pred             CCeEEEEeCCCcEEEecCCCCCC---------------CCCCCCcccceeeeecCCC--CceeEEecCCCeEEEEEeccc
Q 021160          206 IPMFATCGIEKTVKLWAPMPTDF---------------PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       206 ~~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +++|++++.|+.|++||+.....               ..+..|...+..+. ++++  +.++++++.|+.|++|++..+
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR-FSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC-CEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE-EcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            67999999999999999876542               12223444444444 6666  899999999999999999865


Q ss_pred             Ccc---------------ee-EEeecccccccccCCCCeEEEEecc
Q 021160          269 QTL---------------AY-RERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       269 ~~~---------------~~-~~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      +..               +. ..+.|++..+.+...+|.|++|++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          320 DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            321               11 2677888888888899999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.3e-32  Score=231.47  Aligned_cols=257  Identities=8%  Similarity=0.033  Sum_probs=199.5

Q ss_pred             ceeeEEEEeeCCC------cceEEEeccccccccCCCCccceEEEEECCC---CC---cEEEEEecCCcEEEEeCcCCcc
Q 021160            2 VLFNMLFDLRSDS------ATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NP---NYFAVGGSDEYARVYDIRKCHW   69 (316)
Q Consensus         2 ~g~v~vwd~~~~~------~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~---~~l~~g~~dg~v~~wd~~~~~~   69 (316)
                      +|.|++||+.+.+      ....+.           +|...|.+++|+|+   +.   .+|++++.|+.|++||+.+++.
T Consensus        35 dg~i~iw~~~~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~  103 (397)
T 1sq9_A           35 DGYLKVWDNKLLDNENPKDKSYSHF-----------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE  103 (397)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEE-----------CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred             CCEEEEEECCCcccccCCCcceEEe-----------cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence            6899999999876      222222           37889999999997   23   5899999999999999987752


Q ss_pred             cCCCCCCCCceecccccccCCC-----cccEEEEEEc----cCCCe-EEEe-cCCcEEEEEcCC------CCCCCCccCC
Q 021160           70 YSPISSDTPVDTFCPRHLIGKN-----NIHITGLAYS----NTSEL-LISY-NDELVYLFEKNM------GLGPSPLSLS  132 (316)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~-l~s~-~d~~i~iwd~~~------~~~~~~~~~~  132 (316)
                      ..        . .....+ ..|     ...|.+++|+    |++++ |+++ .|+.|++||+..      +         
T Consensus       104 ~~--------~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------  164 (397)
T 1sq9_A          104 TK--------K-VIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS---------  164 (397)
T ss_dssp             TC--------C-EEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH---------
T ss_pred             cc--------c-ccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc---------
Confidence            00        0 002222 555     5899999999    99988 8875 799999999987      4         


Q ss_pred             ccccccCCCcc-----eeeC-------CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec---C---c
Q 021160          133 PEDLQKREEPQ-----VYSG-------HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---D---R  194 (316)
Q Consensus       133 ~~~~~~~~~~~-----~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~---~---~  194 (316)
                             ..+.     .+.+       |...  +.+++| +|++ ++++++.|+.|++||+++++.+..+..   |   .
T Consensus       165 -------~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          165 -------LTLNWSPTLELQGTVESPMTPSQF--ATSVDI-SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             -------TTTCCCCEEEEEEEECCSSSSCCC--CCEEEE-CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             -------ceeeccCcceeeeeeccccCCCCC--ceEEEE-CCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence                   3333     5533       5544  999999 8999 999999999999999999999999998   8   9


Q ss_pred             cceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCC-CCCCCC-------------CcccceeeeecCCCCceeEEecCC
Q 021160          195 HVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTD-FPPLPD-------------NAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      ..|.+++|+|++++|++++.|   +.|++||++..+ +..+..             |...+..+. +++++.++++++.|
T Consensus       234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS-FNDSGETLCSAGWD  312 (397)
T ss_dssp             CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE-ECSSSSEEEEEETT
T ss_pred             CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE-ECCCCCEEEEEeCC
Confidence            999999999999999999999   999999998876 555665             777776666 78889999999999


Q ss_pred             CeEEEEEecccCc------------------------------ceeE-Eeeccc----------ccccccCCCCeEEEEe
Q 021160          258 VIMHVLRLQRRQT------------------------------LAYR-ERRYNA----------ADFESDEEEGETYLLG  296 (316)
Q Consensus       258 ~~~~~w~~~~~~~------------------------------~~~~-~~~~~~----------~~~~~~~~~~~v~~~~  296 (316)
                      +.+++|++.+.+.                              .+.. .+.|++          ..+.++..+|.|.+|+
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            9999999865421                              1222 566665          5677777888888888


Q ss_pred             ccCC
Q 021160          297 FSDS  300 (316)
Q Consensus       297 ~~~~  300 (316)
                      +.++
T Consensus       393 ~~~g  396 (397)
T 1sq9_A          393 EAGG  396 (397)
T ss_dssp             EEC-
T ss_pred             cCCC
Confidence            8664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.6e-32  Score=229.81  Aligned_cols=220  Identities=12%  Similarity=0.083  Sum_probs=181.1

Q ss_pred             ceeeEEEEeeCCC--cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDS--ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~--~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+.+.+  ....+.           +|...|.+++|+|++ .+|++++.|+.|++||+.+++..         
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~---------   87 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELK-----------EHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWK---------   87 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEE-----------CCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEE---------
T ss_pred             CCEEEEEeCCCCcEEeeeeec-----------CCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeee---------
Confidence            5899999998875  322332           378899999999998 89999999999999999877521         


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCC---ccee-eCCcCCcee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREE---PQVY-SGHRNSQTV  154 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~i  154 (316)
                          .......|...|.+++|+|++++|+++ .|+.|++||++..                ..   ...+ .+|...  |
T Consensus        88 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----------------~~~~~~~~~~~~~~~~--i  145 (372)
T 1k8k_C           88 ----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE----------------NDWWVCKHIKKPIRST--V  145 (372)
T ss_dssp             ----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT----------------TTEEEEEEECTTCCSC--E
T ss_pred             ----eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC----------------CcceeeeeeecccCCC--e
Confidence                111125678899999999999988875 7999999999876                21   2222 455655  9


Q ss_pred             eeEEEecCCCcEEEEeccCCeEEEEec------------------cCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC
Q 021160          155 KGVNFFGPNDEYVMSGSDCGHLFIWKK------------------KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK  216 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~  216 (316)
                      .+++| +|++.++++++.||.|++||+                  ..++.+..+..|...|.+++|+|++++|++++.|+
T Consensus       146 ~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  224 (372)
T 1k8k_C          146 LSLDW-HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  224 (372)
T ss_dssp             EEEEE-CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             eEEEE-cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC
Confidence            99999 999999999999999999995                  46788889989999999999999999999999999


Q ss_pred             cEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          217 TVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       217 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      .|++||++.++ +..+..|...+..+. +++++.+++++ .|+.+++|++..
T Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          225 TVCLADADKKMAVATLASETLPLLAVT-FITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEE-EEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEEECCCCceeEEEccCCCCeEEEE-EecCCCEEEEE-eCCeEEEEEccC
Confidence            99999998776 556666777776665 67788877777 899999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-33  Score=235.50  Aligned_cols=224  Identities=10%  Similarity=0.044  Sum_probs=170.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.......         ...+|...|.+++|+|++ ++|++++.|+.|++||+.+++..           
T Consensus        32 d~~i~iw~~~~~~~~~~~---------~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~-----------   90 (377)
T 3dwl_C           32 TNQVELYEQDGNGWKHAR---------TFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTW-----------   90 (377)
T ss_dssp             SSCBCEEEEETTEEEECC---------CBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CC-----------
T ss_pred             CCEEEEEEccCCceEEEE---------EEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCce-----------
Confidence            688999999876311111         112589999999999998 89999999999999999876400           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC-CcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~  159 (316)
                       ........|...|.+++|+|++++|++ +.|+.|++||++.+.             .......+.+ |...  |.+++|
T Consensus        91 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~h~~~--v~~~~~  154 (377)
T 3dwl_C           91 -KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN-------------DWWVSKHLKRPLRST--ILSLDW  154 (377)
T ss_dssp             -CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------------------CCCCEEECSSCCSC--EEEEEE
T ss_pred             -eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc-------------cceeeeEeecccCCC--eEEEEE
Confidence             112222678999999999999987777 579999999998761             0013566666 7765  999999


Q ss_pred             ecCCCcEEEEeccCCeEEEEecc------------------CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKK------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                       +|++++|++++.|+.|++||+.                  .++++..+ +|...|.+++|+|++++|++++.|+.|++|
T Consensus       155 -~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw  232 (377)
T 3dwl_C          155 -HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA  232 (377)
T ss_dssp             -CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred             -cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence             9999999999999999999985                  35566666 899999999999999999999999999999


Q ss_pred             cCCCCC-----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          222 APMPTD-----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       222 d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      |+.++.     +..+..|...+..+. +++++.++++++.++.+ +|+..
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          233 YPSAPEQPPRALITVKLSQLPLRSLL-WANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EECSTTSCEEECCCEECSSSCEEEEE-EEETTEEEEEESSSSEE-EECCC
T ss_pred             ECCCCCCcceeeEeecCCCCceEEEE-EcCCCCEEEEEcCCcEE-EEEeC
Confidence            998876     466777888776666 78889999999877776 56554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-32  Score=245.03  Aligned_cols=212  Identities=19%  Similarity=0.326  Sum_probs=181.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||.. .+....+.           +|...|.+++|+|++ ++|++++.|+.|++||.. ++             
T Consensus       365 dg~v~~~~~~-~~~~~~~~-----------~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~-------------  417 (577)
T 2ymu_A          365 DKTVKLWNRN-GQLLQTLT-----------GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ-------------  417 (577)
T ss_dssp             TSEEEEEETT-CCEEEEEE-----------CCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CC-------------
T ss_pred             CCEEEEEcCC-CCEEEEec-----------CCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CC-------------
Confidence            5789999953 33322222           378899999999999 899999999999999964 33             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ....+ .+|...|.+++|+|++++|+++ .|+.|++||...                 +.+..+.+|...  |.+++| 
T Consensus       418 -~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-----------------~~~~~~~~~~~~--v~~~~~-  475 (577)
T 2ymu_A          418 -LLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-----------------QLLQTLTGHSSS--VRGVAF-  475 (577)
T ss_dssp             -EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -EEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-----------------CEEEEEcCCCCC--EEEEEE-
Confidence             12222 6789999999999999988884 799999999754                 467788889876  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      +|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.|+.|++||.....+..+.+|...+..
T Consensus       476 spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~  554 (577)
T 2ymu_A          476 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG  554 (577)
T ss_dssp             CTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE
T ss_pred             cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEE
Confidence            999999999999999999995 6888999999999999999999999999999999999999766557778889998877


Q ss_pred             eeecCCCCceeEEecCCCeEEEEE
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +. ++++++++++++.|+.|++||
T Consensus       555 ~~-fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          555 VA-FSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EE-ECTTSSCEEEEETTSCEEEEC
T ss_pred             EE-EcCCCCEEEEEeCCCEEEEeC
Confidence            76 889999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-33  Score=239.48  Aligned_cols=263  Identities=13%  Similarity=0.207  Sum_probs=205.5

Q ss_pred             ceeeEEEEeeCCCc--ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSA--TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~--~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+.+...  ......         .+|...|++++|+|++..+|++++.|+.|++||+.+++....     ..
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~  153 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARF---------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS-----NY  153 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEEC---------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT-----TC
T ss_pred             CCeEEEeecccccccccchhhc---------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc-----cc
Confidence            58899999987321  112221         248899999999998448999999999999999987751100     00


Q ss_pred             eecccccccCCCcccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC------cCC
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH------RNS  151 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  151 (316)
                      ..+.. .....|...|.+++|+|+ +.+++++ .|+.|++||++++                +....+..+      ...
T Consensus       154 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          154 TPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----------------KEVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             CCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT----------------EEEEEECCCCCSSCCCCC
T ss_pred             ccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----------------CcceEEeccccccccCCc
Confidence            00111 122578899999999999 5677775 7999999999887                556666655      444


Q ss_pred             ceeeeEEEecCCC-cEEEEeccCC---eEEEEeccCC-eeEEEee-cCccceEEEEEcC-CCCeEEEEeCCCcEEEecCC
Q 021160          152 QTVKGVNFFGPND-EYVMSGSDCG---HLFIWKKKGG-KLVRLMV-GDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       152 ~~i~~~~~~~~~~-~~l~~~~~dg---~v~~wd~~~~-~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~  224 (316)
                        +.+++| +|++ .++++++.++   .|++||++++ +++..+. +|...|.+++|+| ++++|++++.|+.|++||++
T Consensus       217 --v~~~~~-~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          217 --LSVVEW-HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             --EEEEEE-CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             --eEEEEE-CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence              999999 8886 6899999998   9999999986 6677787 8999999999999 89999999999999999999


Q ss_pred             CCC-CCCCCCCcccceeeeecCCCC-ceeEEecCCCeEEEEEecccCcc-------------------------------
Q 021160          225 PTD-FPPLPDNAEKIMKANKQGRED-HSRITLTPDVIMHVLRLQRRQTL-------------------------------  271 (316)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~w~~~~~~~~-------------------------------  271 (316)
                      +++ +..+..|...+..+. +++++ .++++++.|+.+++|++......                               
T Consensus       294 ~~~~~~~~~~~~~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (416)
T 2pm9_A          294 SAEQLSQFPARGNWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS  372 (416)
T ss_dssp             SCCEEEEEECSSSCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred             CCccceeecCCCCceEEEE-ECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence            877 666777888877666 67766 89999999999999998764321                               


Q ss_pred             -------------e-eEEeecccccccccCCCCeEEEEeccC
Q 021160          272 -------------A-YRERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       272 -------------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                                   + -..++|++..++.+..++.|.+|++..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                         1 125778888888888888898888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.7e-32  Score=235.13  Aligned_cols=264  Identities=13%  Similarity=0.128  Sum_probs=204.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|.+.|.+++|+|++  ++++|+.||.|++||+++++             
T Consensus       141 dg~i~vwd~~~~~~~~~~~-----------~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~-------------  194 (464)
T 3v7d_B          141 DKMIRVYDSINKKFLLQLS-----------GHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC-------------  194 (464)
T ss_dssp             TSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTE-------------
T ss_pred             CCcEEEEECCCCcEEEEEe-----------CCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCc-------------
Confidence            6899999998876544432           489999999999976  89999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEcc--CCCeEEE-ecCCcEEEEEcCCCCCCCCccCCc-------cccccCCCcceeeCCcCC
Q 021160           82 FCPRHLIGKNNIHITGLAYSN--TSELLIS-YNDELVYLFEKNMGLGPSPLSLSP-------EDLQKREEPQVYSGHRNS  151 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~--~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  151 (316)
                       +...+ .+|...|.+++|++  ++.++++ +.|+.|++||+.+...........       ...........+.+|...
T Consensus       195 -~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          195 -CTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             -EEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             -EEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence             33333 67999999999995  5667777 479999999998763111100000       000000123456667654


Q ss_pred             ceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCC
Q 021160          152 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP  230 (316)
Q Consensus       152 ~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~  230 (316)
                        +.++   ++++.++++++.|+.|++||+.+++++..+.+|...|.+++|+|+++++++++.|+.|++||+++++ +..
T Consensus       273 --v~~~---~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  347 (464)
T 3v7d_B          273 --VRTV---SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  347 (464)
T ss_dssp             --EEEE---EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             --EEEE---cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence              7766   4578999999999999999999999999999999999999999999999999999999999998877 667


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCccee---------EEeecccccccccCCCCeEEEEeccCCC
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +.+|...+..+.+ .  +.++++++.|+.+++|++.+......         ..+.+++..+.++. +|.+.+|++..++
T Consensus       348 ~~~h~~~v~~~~~-~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          348 LQGHTALVGLLRL-S--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             ECCCSSCEEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             EeCCCCcEEEEEE-c--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence            7788888766653 3  57999999999999999987533221         25667777777766 7899999998876


Q ss_pred             C
Q 021160          302 A  302 (316)
Q Consensus       302 ~  302 (316)
                      .
T Consensus       424 ~  424 (464)
T 3v7d_B          424 L  424 (464)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-31  Score=223.17  Aligned_cols=258  Identities=14%  Similarity=0.141  Sum_probs=199.0

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|.|+|||+.+.+..........      .+|...|.+++|+|++ .+|++|+.|+.|++|+......           
T Consensus        59 ~D~~i~vWd~~~~~~~~~~~~~~l------~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~~-----------  120 (340)
T 4aow_A           59 RDKTIIMWKLTRDETNYGIPQRAL------RGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGTT-----------  120 (340)
T ss_dssp             TTSCEEEEEECCSSSCSEEEEEEE------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE-----------
T ss_pred             CCCeEEEEECCCCCcccceeeEEE------eCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccce-----------
Confidence            378999999987664333322222      2589999999999999 8999999999999999987652           


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         .... ..+...+..+.+++++.+++++ .|+.+++||+....               .......+|...  +..++|
T Consensus       121 ---~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---------------~~~~~~~~~~~~--v~~~~~  179 (340)
T 4aow_A          121 ---TRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---------------KYTVQDESHSEW--VSCVRF  179 (340)
T ss_dssp             ---EEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---------------EEEECSSSCSSC--EEEEEE
T ss_pred             ---eeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc---------------eEEEEeccccCc--ccceEE
Confidence               1111 4556778889999999988874 79999999987651               222334566655  888988


Q ss_pred             ecCC--CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          160 FGPN--DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       160 ~~~~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                       +++  ..++++++.|+.|++||+++++++..+.+|...|++++|+|++++|++++.|+.|++||++..+ +..+. +..
T Consensus       180 -~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~  257 (340)
T 4aow_A          180 -SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGD  257 (340)
T ss_dssp             -CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CSS
T ss_pred             -ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-CCc
Confidence             655  4578899999999999999999999999999999999999999999999999999999999876 33333 334


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCc------------------cee-EEeecccccccccCCCCeEEEEec
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT------------------LAY-RERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      .+.... +++++ .+++++.|+.+++|+++.+..                  .+. ..+.|++..++++..+|.|.+|++
T Consensus       258 ~v~~~~-~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          258 IINALC-FSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             CEEEEE-ECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             eEEeee-cCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            444443 56654 566777899999999875321                  111 267888889999999999999999


Q ss_pred             cCCC
Q 021160          298 SDSD  301 (316)
Q Consensus       298 ~~~~  301 (316)
                      +.|.
T Consensus       336 ~tGt  339 (340)
T 4aow_A          336 TIGT  339 (340)
T ss_dssp             EC--
T ss_pred             CCcC
Confidence            8764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-31  Score=227.61  Aligned_cols=236  Identities=14%  Similarity=0.110  Sum_probs=187.5

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccc-cCCCcccEEEEEEcc-CCCeEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN-TSELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~  108 (316)
                      .+|...|++++|+|+++.+|++|+.||.|++||+.+++.              ...+ ..+|...|.+++|+| ++++|+
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~~l~  135 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--------------TSFIQGMGPGDAITGMKFNQFNTNQLF  135 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--------------EEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--------------ceeeecCCcCCceeEEEeCCCCCCEEE
Confidence            368999999999999867999999999999999997762              2222 146899999999999 567777


Q ss_pred             E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160          109 S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       109 s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      + +.|+.|++||+...                 ....+..+. ....+.+++| +|++.+|++++.|+.|++||+ +++.
T Consensus       136 s~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~-~~~~  196 (383)
T 3ei3_B          136 VSSIRGATTLRDFSGS-----------------VIQVFAKTDSWDYWYCCVDV-SVSRQMLATGDSTGRLLLLGL-DGHE  196 (383)
T ss_dssp             EEETTTEEEEEETTSC-----------------EEEEEECCCCSSCCEEEEEE-ETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred             EEeCCCEEEEEECCCC-----------------ceEEEeccCCCCCCeEEEEE-CCCCCEEEEECCCCCEEEEEC-CCCE
Confidence            7 47999999999864                 444554443 1133999999 899999999999999999999 5788


Q ss_pred             EEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCC----CCCCCCCCcccceeeeecCC-CCceeEEecCCCeE
Q 021160          187 VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIM  260 (316)
Q Consensus       187 ~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~  260 (316)
                      +..+.+|...|.+++|+|+++ +|++++.|+.|++||++..    ......+|...+..+. +++ ++.++++++.|+.+
T Consensus       197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~l~~~~~d~~i  275 (383)
T 3ei3_B          197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY-FNPTDSTKLLTTDQRNEI  275 (383)
T ss_dssp             EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE-ECTTTSCEEEEEESSSEE
T ss_pred             EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEE-EcCCCCCEEEEEcCCCcE
Confidence            889999999999999999999 8999999999999999873    3222225777776666 677 99999999999999


Q ss_pred             EEEEecccCcceeE---------------------------EeecccccccccCCCCeEEEEeccCCCC
Q 021160          261 HVLRLQRRQTLAYR---------------------------ERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       261 ~~w~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ++||+.+.......                           .+.|++..  ++..++.|++|+...+..
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred             EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence            99999875442221                           23334433  556888999999877653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-31  Score=229.69  Aligned_cols=261  Identities=11%  Similarity=0.094  Sum_probs=197.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|.|+|||+.......       .......+|.+.|++++|+| ++ .+|++|+.||.|++||+.++......  ..+  
T Consensus        56 ~g~i~v~~~~~~~~~~-------~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~--~~~--  123 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVD-------KNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPL--REP--  123 (402)
T ss_dssp             SCCEEEEETTCCEECC-------TTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCB--CSC--
T ss_pred             CCEEEEEECccCCCCC-------CCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCcccc--CCc--
Confidence            5889999986542210       01112346899999999999 66 89999999999999999987522110  011  


Q ss_pred             ecccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCccee--eCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~  156 (316)
                         ... ..+|...|.+++|+|++ .+|++ +.|+.|++||++++                +....+  .+|...  |.+
T Consensus       124 ---~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~--v~~  181 (402)
T 2aq5_A          124 ---VIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG----------------AAVLTLGPDVHPDT--IYS  181 (402)
T ss_dssp             ---SEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----------------EEEEEECTTTCCSC--EEE
T ss_pred             ---eEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----------------CccEEEecCCCCCc--eEE
Confidence               222 26789999999999998 57777 47999999999987                567777  677766  999


Q ss_pred             EEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-ecCccc-eEEEEEcCCCCeEEEE---eCCCcEEEecCCCCCC-C-
Q 021160          157 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHV-VNQLEPHPHIPMFATC---GIEKTVKLWAPMPTDF-P-  229 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~-v~~~~~~p~~~~l~s~---~~d~~i~iwd~~~~~~-~-  229 (316)
                      ++| +|++.+|++++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++++|+++   +.|+.|++||++.... . 
T Consensus       182 ~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~  260 (402)
T 2aq5_A          182 VDW-SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS  260 (402)
T ss_dssp             EEE-CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred             EEE-CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence            999 899999999999999999999999999888 688765 8999999999999998   7899999999987652 1 


Q ss_pred             CC-CCCcccceeeeecCCCCceeE-EecCCCeEEEEEecccCc-c-ee-----------EEeecccccccccCCCCeEEE
Q 021160          230 PL-PDNAEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRRQT-L-AY-----------RERRYNAADFESDEEEGETYL  294 (316)
Q Consensus       230 ~~-~~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~w~~~~~~~-~-~~-----------~~~~~~~~~~~~~~~~~~v~~  294 (316)
                      .. ..+...+.... +++++..++ +++.|+.|++|++.+++. . ..           ..+.|+...+.+.++  .+.+
T Consensus       261 ~~~~~~~~~v~~~~-~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~--~~~~  337 (402)
T 2aq5_A          261 LQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE--IARF  337 (402)
T ss_dssp             EEECCCCSSCEEEE-EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE--EEEE
T ss_pred             EEeccCCCceeEEE-EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce--eEEE
Confidence            11 13445555555 777777775 677899999999988753 1 11           145666666666544  4777


Q ss_pred             EeccCC
Q 021160          295 LGFSDS  300 (316)
Q Consensus       295 ~~~~~~  300 (316)
                      |++..+
T Consensus       338 ~~l~~~  343 (402)
T 2aq5_A          338 YKLHER  343 (402)
T ss_dssp             EEEETT
T ss_pred             EEcCCC
Confidence            777654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-32  Score=228.20  Aligned_cols=234  Identities=14%  Similarity=0.165  Sum_probs=193.4

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC--CCeEEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s  109 (316)
                      +|...|++++|+|++ .+|++|+.||.|++||+......            .... ..+|...|.+++|+++  +++|++
T Consensus         9 ~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~------------~~~~-~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            9 AHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHK------------LIDT-LTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             ECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE------------EEEE-ECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcce------------eeeE-ecCCCCcEEEEEeCCCCCCCEEEE
Confidence            589999999999999 89999999999999999844310            2222 2789999999999987  788887


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCC--CcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccCC
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      + .|+.|++||+.++                .  ....+..|...  |.+++| +|+  +.++++++.|+.|++||+.++
T Consensus        75 ~~~dg~v~iwd~~~~----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           75 CSYDGKVLIWKEENG----------------RWSQIAVHAVHSAS--VNSVQW-APHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             EETTSCEEEEEEETT----------------EEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             eccCCEEEEEEcCCC----------------ceeEeeeecCCCcc--eEEEEe-CCCCCCCEEEEecCCCcEEEEecCCC
Confidence            5 7999999999876                3  55666777766  999999 898  999999999999999999877


Q ss_pred             e--eEEEeecCccceEEEEEcC-------------CCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeeec
Q 021160          185 K--LVRLMVGDRHVVNQLEPHP-------------HIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQ  244 (316)
Q Consensus       185 ~--~~~~~~~~~~~v~~~~~~p-------------~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~  244 (316)
                      .  ....+..|...|.+++|+|             ++.+|++++.|+.|++||++...     ...+.+|...+..+. +
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~-~  214 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-W  214 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-E
T ss_pred             CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE-E
Confidence            3  3456678999999999999             68999999999999999997654     235667778776666 7


Q ss_pred             CCC---CceeEEecCCCeEEEEEecccC--------------ccee-EEeecccccccccCCCCeEEEEeccC
Q 021160          245 GRE---DHSRITLTPDVIMHVLRLQRRQ--------------TLAY-RERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       245 ~~~---~~~~~s~~~d~~~~~w~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      +++   +.++++++.|+.+++|++....              ..+. ..+.|++..+.....+|.|++|++..
T Consensus       215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            777   8999999999999999998742              1111 26788888899888899999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-31  Score=223.14  Aligned_cols=264  Identities=10%  Similarity=0.084  Sum_probs=208.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|+|++ ++|++++.||.|++||+.+++.            
T Consensus        53 dg~i~vwd~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~------------  108 (369)
T 3zwl_B           53 DSSASVWYSLNGERLGTLD-----------GHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQC------------  108 (369)
T ss_dssp             SSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCE------------
T ss_pred             CCEEEEEeCCCchhhhhhh-----------hcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence            5889999998876544442           378899999999998 8999999999999999998862            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cC-----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-ND-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                        ...+ . +...+.+++|+|++++++++ .+     +.|++||+........     ...........+..+.....+.
T Consensus       109 --~~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          109 --VATW-K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE-----LTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             --EEEE-E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC-----EEEECSSCSEEEECCTTCCCEE
T ss_pred             --EEEe-e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee-----ecccccceeeeccCCcCcccee
Confidence              2222 2 67789999999999987775 56     9999999987621110     0011112445556666533499


Q ss_pred             eEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCC
Q 021160          156 GVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN  234 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  234 (316)
                      +++| +|+++++++++.+|.|++||+.+ ++.+..+..|...|.+++|+|++++|++++.|+.|++||+++.+......+
T Consensus       180 ~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  258 (369)
T 3zwl_B          180 VAGW-STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET  258 (369)
T ss_dssp             EEEE-CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEE-cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC
Confidence            9999 99999999999999999999998 788899999999999999999999999999999999999998773222224


Q ss_pred             cccceeeeecCCCCceeEEecCCC--------------eEEEEEecccCcc---------ee-EEeecccccccccCCCC
Q 021160          235 AEKIMKANKQGREDHSRITLTPDV--------------IMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEG  290 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~--------------~~~~w~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~  290 (316)
                      ...+.... +++++.++++++.++              .+++|++.+++..         +. ..+.|++..+.+...+|
T Consensus       259 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          259 DCPLNTAV-ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             SSCEEEEE-ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCceeEE-ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence            45554444 888899999998887              8999998765332         12 26788888999999999


Q ss_pred             eEEEEeccCC
Q 021160          291 ETYLLGFSDS  300 (316)
Q Consensus       291 ~v~~~~~~~~  300 (316)
                      .|.+|++..+
T Consensus       338 ~v~iw~~~~~  347 (369)
T 3zwl_B          338 FIRLHHFEKS  347 (369)
T ss_dssp             EEEEEEECHH
T ss_pred             eEEEEECccc
Confidence            9999999765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-32  Score=237.37  Aligned_cols=263  Identities=9%  Similarity=0.060  Sum_probs=187.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|+|+|||+.....................+|...|++++|+|.  ..|++|+.||+|++||++++.             
T Consensus       234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~-------------  298 (524)
T 2j04_B          234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPE-------------  298 (524)
T ss_dssp             TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCS-------------
T ss_pred             CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCC-------------
Confidence            68999999986643210000000111123468899999999985  489999999999999998764             


Q ss_pred             cccccccCCCcccEEEE--EEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGL--AYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~--~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                       .+.....+|...|.++  +|+|++ .+|+++ .|++|++||++++                +....+.+|.....+.++
T Consensus       299 -~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----------------~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          299 -VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----------------ATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             -SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----------------HHHCEEEEECSCCSCCCE
T ss_pred             -CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----------------CcccccccccccCcccce
Confidence             2222237899999999  578887 788885 7999999999887                556666666532237899


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCc--
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--  235 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  235 (316)
                      +| +|+++.+++++.|++|++||+++++++..+.+|.+.|++++|+|++++|++|+.|++|++||+..+.+..+....  
T Consensus       362 ~f-sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~  440 (524)
T 2j04_B          362 VY-CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSAT  440 (524)
T ss_dssp             EE-ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------
T ss_pred             Ee-CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccc
Confidence            99 999999999999999999999999988889999999999999999999999999999999998765443322111  


Q ss_pred             ---ccceeeeecCCCCceeEEecCCCeEEEEE--------ecccCcceeE-Eeeccc---ccccccCCCCeEEEEeccC
Q 021160          236 ---EKIMKANKQGREDHSRITLTPDVIMHVLR--------LQRRQTLAYR-ERRYNA---ADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       236 ---~~~~~~~~~~~~~~~~~s~~~d~~~~~w~--------~~~~~~~~~~-~~~~~~---~~~~~~~~~~~v~~~~~~~  299 (316)
                         ..+...+ +++++..+ ....+..+..|.        +......++. .+.|+.   ..++++..+|.|.+|++..
T Consensus       441 ~~~~~v~~v~-~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          441 QKSLRLWKWD-YSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCCEEEECB-CCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eeeeEEEEec-cCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence               1233444 56666533 333322222222        1112222333 788875   4889999999999999854

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-31  Score=244.28  Aligned_cols=240  Identities=15%  Similarity=0.177  Sum_probs=195.0

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+|...|++++|+|++..+|++|+.|++|++|++.+....         ...... ...+|...|.+++|+|++++|+++
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---------~~~~~~-~~~~h~~~v~~v~~s~~g~~l~sg  448 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---------YGVAQR-RLTGHSHFVEDVVLSSDGQFALSG  448 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------SCEEEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------cccccc-eecCCCCcEEEEEECCCCCEEEEE
Confidence            3699999999999987689999999999999999865310         000112 237899999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|++|++||+.++                .....+.+|...  |.+++| +|++.+|++++.|+.|++||.........
T Consensus       449 s~Dg~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          449 SWDGELRLWDLAAG----------------VSTRRFVGHTKD--VLSVAF-SLDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             ETTSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             eCCCcEEEEECCCC----------------cceeEEeCCCCC--EEEEEE-eCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence             7999999999887                677888999976  999999 99999999999999999999875544333


Q ss_pred             e---ecCccceEEEEEcCCC--CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          190 M---VGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       190 ~---~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      .   .+|...|.+++|+|++  ..|++++.|+.|++||++..+ ...+.+|...+..+. +++++.++++++.|+.|++|
T Consensus       510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~-~spdg~~l~sg~~Dg~i~iw  588 (694)
T 3dm0_A          510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVA-VSPDGSLCASGGKDGVVLLW  588 (694)
T ss_dssp             CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSBCEEE
T ss_pred             ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE-EeCCCCEEEEEeCCCeEEEE
Confidence            2   3688899999999987  579999999999999999877 566778888876666 88899999999999999999


Q ss_pred             EecccCcc--------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          264 RLQRRQTL--------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       264 ~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      |+.+++..        +. ..+.|+...+....+ +.|.+||+..+.
T Consensus       589 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~  634 (694)
T 3dm0_A          589 DLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS  634 (694)
T ss_dssp             ETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTE
T ss_pred             ECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCC
Confidence            99775332        11 256777766665544 459999987653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-31  Score=225.74  Aligned_cols=244  Identities=12%  Similarity=0.037  Sum_probs=190.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+...         +|...|.+++|+|++ .+|++++.|+.|++||++..+..           
T Consensus        73 dg~i~vwd~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------  131 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKPTLVIL---------RINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------  131 (372)
T ss_dssp             TSCEEEEEEETTEEEEEEECC---------CCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------
T ss_pred             CCeEEEEECCCCeeeeeEEee---------cCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------
Confidence            688999999877654444322         378899999999998 89999999999999999876410           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCcc--ccccCCCcceeeCCcCCceeeeEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPE--DLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                      .........|...|.+++|+|++++|+++ .|+.|++||++............+  ..........+.+|...  +.+++
T Consensus       132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~  209 (372)
T 1k8k_C          132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVC  209 (372)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEE
T ss_pred             eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe--EEEEE
Confidence            01223336788999999999999988875 799999999764311100000000  01222456667777765  99999


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC--CC---------
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--TD---------  227 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~--~~---------  227 (316)
                      | +|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++++++++ .|+.|++|++..  +.         
T Consensus       210 ~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~  287 (372)
T 1k8k_C          210 F-SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDV  287 (372)
T ss_dssp             E-CSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred             E-CCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCc
Confidence            9 9999999999999999999999999999999999999999999999988877 899999999877  31         


Q ss_pred             ------------------------C------CCC-CCCcccceeeeecCCCC---ceeEEecCCCeEEEEEecccCc
Q 021160          228 ------------------------F------PPL-PDNAEKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       228 ------------------------~------~~~-~~~~~~~~~~~~~~~~~---~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                                              .      ..+ .+|...+..+.+.++++   .++++++.|+.|++|++.+.+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          288 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                                    0      333 37888888888677777   9999999999999999987643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-31  Score=228.79  Aligned_cols=254  Identities=14%  Similarity=0.207  Sum_probs=201.9

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +++.|+|||+.+.+..+.+..+         +|...|++++|+|++ ++|++|+.||.|++||+.+++            
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~---------~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~------------  180 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQK------------  180 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE------------
T ss_pred             eCCEEEEEECCCCCEEEEEEec---------CCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCc------------
Confidence            3689999999998877776653         477889999999999 899999999999999999887            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +.... .+|...+.+++++  +.+++++ .|+.+++||.....               ..+..+.+|...  +..+.+
T Consensus       181 --~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---------------~~~~~~~~h~~~--~~~~~~  238 (420)
T 4gga_A          181 --RLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---------------HHVATLSGHSQE--VCGLRW  238 (420)
T ss_dssp             --EEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE
T ss_pred             --EEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---------------eeeEEecccccc--eeeeee
Confidence              33333 7889999998875  5677775 79999999987752               455678888876  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCe----eEEEeecCccceEEEEEcCCCCe-EEE--EeCCCcEEEecCCCCC-CCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHIPM-FAT--CGIEKTVKLWAPMPTD-FPPL  231 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~-l~s--~~~d~~i~iwd~~~~~-~~~~  231 (316)
                       +|++.++++++.|+.+++|+..+++    .+.....|...|.+++|+|.+.. +++  |+.|++|++||+.++. ...+
T Consensus       239 -~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          239 -APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  317 (420)
T ss_dssp             -CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred             -cCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence             9999999999999999999998765    35566789999999999997754 444  4589999999999887 3333


Q ss_pred             CCCcccceeeeecCCCCceeEEe--cCCCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160          232 PDNAEKIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~--~~d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      . +...+.... +.+++..++++  ..|+.|++|++.+++..         +.. .+.|++..++++..|+.|.+|++.+
T Consensus       318 ~-~~~~v~~~~-~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          318 D-AHSQVCSIL-WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             E-CSSCEEEEE-EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             c-cccceeeee-ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            3 334455555 56666666554  47999999998765332         222 6889999999999999999999876


Q ss_pred             CC
Q 021160          300 SD  301 (316)
Q Consensus       300 ~~  301 (316)
                      .+
T Consensus       396 ~~  397 (420)
T 4gga_A          396 LD  397 (420)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3e-31  Score=220.98  Aligned_cols=241  Identities=14%  Similarity=0.119  Sum_probs=196.2

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +|...|++++|+|++ .++++++ ||.|++||+.+++...      ++..+    ....|...|.+++|+|++++++++ 
T Consensus        49 ~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~------~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A           49 NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKS------PVSQL----DCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCS------CSEEE----ECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             cCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCcee------eeecc----cccCCCCcEEEEEEcCCCCEEEEEc
Confidence            589999999999999 8999988 9999999998765211      11111    013688899999999999977774 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|+.|++||+.++.              ......+..|...  +.+++| +|+++++++++.+|.|++||+++++.+..+
T Consensus       117 ~d~~i~~~d~~~~~--------------~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          117 EASTLSIWDLAAPT--------------PRIKAELTSSAPA--CYALAI-SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             SSSEEEEEECCCC----------------EEEEEEECSSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEECCCCC--------------cceeeecccCCCc--eEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence            79999999998761              0144566777755  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ..|...|.+++|+|++++|++++.|+.|++||++.++......+...+..+. +++++.++++++.++.+++|++.+...
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG-YCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEE-ECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            9999999999999999999999999999999999876332233555555554 788999999999999999999876533


Q ss_pred             cee---------EEeecccccccccCCCCeEEEEeccCCCC
Q 021160          271 LAY---------RERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       271 ~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ...         ..+.|++..+.+...+|.+.+|+...+..
T Consensus       259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            221         26788888888888999999999877643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=230.59  Aligned_cols=250  Identities=13%  Similarity=0.133  Sum_probs=178.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCc------------cceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNS------------IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCH   68 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~------------~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~   68 (316)
                      +|.|+|||+.+.+..........+......+|.            ..|++++|+|++. .+|++++.|+.|++||+.+++
T Consensus        49 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~  128 (447)
T 3dw8_B           49 GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERD  128 (447)
T ss_dssp             TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEE
T ss_pred             CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccccc
Confidence            689999999876520000000000000012466            7899999999863 489999999999999998644


Q ss_pred             ccCCC-C---------CCCCceec---------------ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160           69 WYSPI-S---------SDTPVDTF---------------CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        69 ~~~~~-~---------~~~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  123 (316)
                      ..... .         ....+..+               +...+..+|...|.+++|+|++++|+++.|+.|++||++..
T Consensus       129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~  208 (447)
T 3dw8_B          129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEIT  208 (447)
T ss_dssp             EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEE
T ss_pred             CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCC
Confidence            21000 0         00000000               01122367999999999999999988889999999999843


Q ss_pred             CCCCCccCCccccccCCCcc-------eeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCee----EEEee
Q 021160          124 LGPSPLSLSPEDLQKREEPQ-------VYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKL----VRLMV  191 (316)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~----~~~~~  191 (316)
                      .               ....       .+.+|...  |.+++| +|++ .+|++|+.||.|++||+++++.    +..+.
T Consensus       209 ~---------------~~~~~~~~~~~~~~~~~~~--v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  270 (447)
T 3dw8_B          209 D---------------RSFNIVDIKPANMEELTEV--ITAAEF-HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE  270 (447)
T ss_dssp             E---------------EEEEEEECCCSSGGGCCCC--EEEEEE-CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred             C---------------ceeeeeecccccccccCcc--eEEEEE-CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence            1               1222       35567755  999999 8998 9999999999999999999887    78888


Q ss_pred             cCcc------------ceEEEEEcCCCCeEEEEeCCCcEEEecCCC-CC-CCCCCCCccccee--------------eee
Q 021160          192 GDRH------------VVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TD-FPPLPDNAEKIMK--------------ANK  243 (316)
Q Consensus       192 ~~~~------------~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~-~~-~~~~~~~~~~~~~--------------~~~  243 (316)
                      .|..            .|.+++|+|++++|++++. +.|++||++. ++ +..+..|......              ...
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  349 (447)
T 3dw8_B          271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC  349 (447)
T ss_dssp             CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred             cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence            8876            8999999999999999998 9999999986 54 6666666432211              134


Q ss_pred             cCCCCceeEEecCCCeEEEEEecccCc
Q 021160          244 QGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       244 ~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +++++.++++++.|+.|++||+.+++.
T Consensus       350 ~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          350 WNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             ECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            888999999999999999999987654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.7e-31  Score=226.16  Aligned_cols=265  Identities=15%  Similarity=0.198  Sum_probs=200.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +.+++|++...+....+.           +|.+.|++++|+| ++ ++|++|+.||.|++||+.+++........ ....
T Consensus        23 ~~~~v~~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~   89 (408)
T 4a11_B           23 STRRVLGLELNKDRDVER-----------IHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCK-AVCS   89 (408)
T ss_dssp             HHHHHHTEEECTTEEECC-----------CCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEEC-EEEE
T ss_pred             CcceeeccccCcceeeee-----------ccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEecc-cccc
Confidence            446778877666544432           4899999999999 77 89999999999999999987632211000 0000


Q ss_pred             cccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      . ......+|...|.+++|+| ++.+|+++ .|+.|++||+.++                .....+. +...  +.++.+
T Consensus        90 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~-~~~~--~~~~~~  149 (408)
T 4a11_B           90 I-GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------QTADVFN-FEET--VYSHHM  149 (408)
T ss_dssp             E-CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------EEEEEEE-CSSC--EEEEEE
T ss_pred             c-cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------ccceecc-CCCc--eeeeEe
Confidence            0 0111146899999999999 56677774 7999999999887                4555555 4433  888888


Q ss_pred             ecC---CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC--C-----
Q 021160          160 FGP---NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--F-----  228 (316)
Q Consensus       160 ~~~---~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~-----  228 (316)
                       .+   ++.++++++.++.|++||+++++.+..+..|...|.+++|+|+++. |++++.|+.|++||++...  .     
T Consensus       150 -~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~  228 (408)
T 4a11_B          150 -SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ  228 (408)
T ss_dssp             -CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred             -ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence             66   4559999999999999999999999999999999999999999985 8899999999999997653  1     


Q ss_pred             ----------CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc----------------------------
Q 021160          229 ----------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT----------------------------  270 (316)
Q Consensus       229 ----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~----------------------------  270 (316)
                                .....|...+..+. +++++.++++++.|+.+++|++.+++.                            
T Consensus       229 ~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          229 HNGKKSQAVESANTAHNGKVNGLC-FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTCSCCCTTTSSCSCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             cccccceeeccccccccCceeEEE-EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                      11245666666665 788999999999999999999875321                            


Q ss_pred             ----------------------------cee-EEeecccccccccCCCCeEEEEeccCCCC
Q 021160          271 ----------------------------LAY-RERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       271 ----------------------------~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                                                  .+. ..+.|++..+.++..+|.|.+|++...+.
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence                                        111 25777888888888899999999887653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-32  Score=231.84  Aligned_cols=233  Identities=12%  Similarity=0.121  Sum_probs=179.0

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      |..+|++++|+|++ ++|++|+.|+.|++||+.++...            ....+ .+|...|.+++|+|++++|+++ .
T Consensus        10 ~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~------------~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           10 LPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWK------------HARTF-SDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             CSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEE------------ECCCB-CCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceE------------EEEEE-ecCCceEEEEEEeCCCCEEEEEeC
Confidence            46789999999999 89999999999999999976210            22223 6899999999999999988885 7


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe---eEE
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVR  188 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~---~~~  188 (316)
                      |+.|++||+.++.             .......+.+|...  |.+++| +|++++|++++.|+.|++||+++++   ...
T Consensus        76 d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           76 DRNAYVYEKRPDG-------------TWKQTLVLLRLNRA--ATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             TSSEEEC-------------------CCCCEEECCCCSSC--EEEEEC-CTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred             CCeEEEEEcCCCC-------------ceeeeeEecccCCc--eEEEEE-CCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence            9999999998761             00245566677766  999999 9999999999999999999999887   467


Q ss_pred             Eeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-------------------CCCCCCCcccceeeeecCCCC
Q 021160          189 LMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------------------FPPLPDNAEKIMKANKQGRED  248 (316)
Q Consensus       189 ~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  248 (316)
                      .+.. |...|.+++|+|++++|++++.|+.|++||++...                   +..+ +|...+..+. +++++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-~sp~~  217 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG-FSPSG  217 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE-ECTTS
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE-ECCCC
Confidence            7777 99999999999999999999999999999985321                   2333 6667776665 88899


Q ss_pred             ceeEEecCCCeEEEEEecccCc----c---------ee-EEeecccccccccCCCCeEEEEecc
Q 021160          249 HSRITLTPDVIMHVLRLQRRQT----L---------AY-RERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       249 ~~~~s~~~d~~~~~w~~~~~~~----~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      .++++++.|+.|++|++.+++.    .         +. ..+.|++..++++.+++.+ +|+..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999999999999987754    1         11 2577788888877766555 66554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.3e-32  Score=226.87  Aligned_cols=234  Identities=13%  Similarity=0.093  Sum_probs=178.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|+| ++ .+|++|+.||.|++||+++++.           
T Consensus        94 dg~i~v~d~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-----------  150 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYV-----------GHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTL-----------  150 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEE-----------SCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEE-----------
T ss_pred             CCEEEEEEchhceEeeeec-----------CCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeE-----------
Confidence            6899999998876655443           3788999999999 66 8999999999999999998762           


Q ss_pred             ecccccc--cCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCC-----------CCccCCccc-cccCCCccee
Q 021160           81 TFCPRHL--IGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP-----------SPLSLSPED-LQKREEPQVY  145 (316)
Q Consensus        81 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~  145 (316)
                         ...+  ...|...|.+++|+|++++|+++ .|+.|++||++++...           ....+.... ..........
T Consensus       151 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          151 ---VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             ---EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             ---EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence               2221  25788999999999999988875 7999999999865200           000000000 0000111223


Q ss_pred             eCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe--------------eEEEeecCccceEEEEEcCC--CCeE
Q 021160          146 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--------------LVRLMVGDRHVVNQLEPHPH--IPMF  209 (316)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~--------------~~~~~~~~~~~v~~~~~~p~--~~~l  209 (316)
                      ..|...  |.+++| +  ++++++++.|+.|++||+.+++              .+..+..|...|.+++|+|+  +++|
T Consensus       228 ~~~~~~--v~~~~~-~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          228 DIHRNY--VDCVRW-L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             SSCSSC--CCEEEE-E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             cCCcce--EEEEEE-c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence            346655  999999 5  7799999999999999988764              37788889999999999999  9999


Q ss_pred             EEEeCCCcEEEecCCCCCCC-----CCCCC--cccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          210 ATCGIEKTVKLWAPMPTDFP-----PLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       210 ~s~~~d~~i~iwd~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ++++.||.|++||+..++..     .+..|  ...+..+. ++++++++++++.|+.|++||+.+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS-FSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEE-eCCCCCeEEEEeCCCEEEEEEecC
Confidence            99999999999999987522     45555  56665555 888999999999999999999763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8e-31  Score=219.00  Aligned_cols=249  Identities=12%  Similarity=0.115  Sum_probs=180.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+.+......... ..      .+|...|++++|+|.  + .+|++|+.||.|++||+++++....      .
T Consensus        32 dg~i~iw~~~~~~~~~~~~~-~~------~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~------~   97 (351)
T 3f3f_A           32 DQHIKVFKLDKDTSNWELSD-SW------RAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS------G   97 (351)
T ss_dssp             TSEEEEEEECSSSCCEEEEE-EE------ECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS------S
T ss_pred             CCeEEEEECCCCCCcceecc-ee------ccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc------c
Confidence            68999999987643211111 11      148899999999994  6 8999999999999999987642110      0


Q ss_pred             eecccccccCCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                      ..+........|...|.+++|+|+  +.++++ +.|+.|++||++++........... . . ........+...  +.+
T Consensus        98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~--~~~  172 (351)
T 3f3f_A           98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-M-K-VLSIPPANHLQS--DFC  172 (351)
T ss_dssp             CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-E-E-SCSCCCSSCSCC--CEE
T ss_pred             cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-c-c-ccccccCCcccc--eeE
Confidence            000111222678999999999999  887777 5799999999987721110000000 0 0 000001134444  999


Q ss_pred             EEEecCC---CcEEEEeccCCeEEEEeccCCee--EEEeecCccceEEEEEcCCC----CeEEEEeCCCcEEEecCCCCC
Q 021160          157 VNFFGPN---DEYVMSGSDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       157 ~~~~~~~---~~~l~~~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~p~~----~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ++| +|+   +.++++++.++.+.+|+...++.  +..+.+|...|.+++|+|++    ++|++++.|+.|++||++...
T Consensus       173 ~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~  251 (351)
T 3f3f_A          173 LSW-CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL  251 (351)
T ss_dssp             EEE-CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred             EEe-ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence            999 886   99999999999998888877765  66778899999999999998    789999999999999987641


Q ss_pred             -----------------------------------------------CCCCCCCcccceeeeecCCCCceeEEecCCCeE
Q 021160          228 -----------------------------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIM  260 (316)
Q Consensus       228 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  260 (316)
                                                                     +..+.+|...+..+. +++++.++++++.|+.|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS-WNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             ---------------------------------------CCSEEEEEEEEECTTSSCEEEEE-ECSSSCCEEEEETTSCE
T ss_pred             CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE-EcCCCCEEEEecCCCcE
Confidence                                                           233445667776665 78888999999999999


Q ss_pred             EEEEecccCcc
Q 021160          261 HVLRLQRRQTL  271 (316)
Q Consensus       261 ~~w~~~~~~~~  271 (316)
                      ++|++..++..
T Consensus       331 ~iw~~~~~~~~  341 (351)
T 3f3f_A          331 RLWKATYSNEF  341 (351)
T ss_dssp             EEEEECTTSCE
T ss_pred             EEEecCcCcch
Confidence            99999877554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-31  Score=226.44  Aligned_cols=230  Identities=10%  Similarity=0.101  Sum_probs=181.8

Q ss_pred             ceeeEEEEeeCCCc-----ceEEEeccccccccCCCC-----ccceEEEEEC----CCCCcE-EEEEecCCcEEEEeCcC
Q 021160            2 VLFNMLFDLRSDSA-----TRLFYCSSFSENSKQPMN-----SIRLNAIVID----PRNPNY-FAVGGSDEYARVYDIRK   66 (316)
Q Consensus         2 ~g~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~gh-----~~~v~~~~~~----~~~~~~-l~~g~~dg~v~~wd~~~   66 (316)
                      +|.|++||+.+.+.     ...+.           +|     ...|.+++|+    |++ .+ |++++.||.|++||+++
T Consensus        90 dg~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           90 SGDLLFYRITREDETKKVIFEKLD-----------LLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEEC-----------CSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             CCCEEEEEccCCcccccccceeec-----------ccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence            68999999998765     22222           24     5899999999    988 78 99999999999999987


Q ss_pred             ------CcccCCCCCCCCceeccc-ccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCcccccc
Q 021160           67 ------CHWYSPISSDTPVDTFCP-RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQK  138 (316)
Q Consensus        67 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  138 (316)
                            ++....    .+...+.. ......|...|.+++|+|++ +++++ .|+.|++||++++               
T Consensus       158 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---------------  217 (397)
T 1sq9_A          158 FADESNSLTLNW----SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---------------  217 (397)
T ss_dssp             SSSHHHHTTTCC----CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---------------
T ss_pred             cccccccceeec----cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---------------
Confidence                  442110    00001000 00114578899999999999 88885 6999999999887               


Q ss_pred             CCCcceeeC---C---cCCceeeeEEEecCCCcEEEEeccC---CeEEEEeccCCeeEEEeec-------------Cccc
Q 021160          139 REEPQVYSG---H---RNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVG-------------DRHV  196 (316)
Q Consensus       139 ~~~~~~~~~---~---~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~-------------~~~~  196 (316)
                       +....+..   |   ...  +.+++| +|++.+|++++.|   +.|++||+++++.+..+.+             |...
T Consensus       218 -~~~~~~~~~~~h~~~~~~--i~~i~~-~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          218 -RPLYNFESQHSMINNSNS--IRSVKF-SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             -EEEEEEECCC---CCCCC--EEEEEE-CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred             -ceeEEEeccccccccCCc--cceEEE-CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence             67777887   7   655  999999 9999999999999   9999999999999999988             9999


Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC------CC---------------cccceeeeecCCCC------
Q 021160          197 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP------DN---------------AEKIMKANKQGRED------  248 (316)
Q Consensus       197 v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~------~~---------------~~~~~~~~~~~~~~------  248 (316)
                      |.+++|+|++++|++++.|+.|++||++..+ +..+.      .|               ...+..+. +.+++      
T Consensus       294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~-~~~~g~~~~~~  372 (397)
T 1sq9_A          294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK-FLKKGWRSGMG  372 (397)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE-EECTTTSBSTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEE-ecccccccccc
Confidence            9999999999999999999999999998876 44454      55               67776666 66766      


Q ss_pred             ----ceeEEecCCCeEEEEEeccc
Q 021160          249 ----HSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       249 ----~~~~s~~~d~~~~~w~~~~~  268 (316)
                          .++++++.|+.|++|++.++
T Consensus       373 ~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          373 ADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccceEEEecCCCcEEEEEcCCC
Confidence                79999999999999998865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.3e-31  Score=218.60  Aligned_cols=249  Identities=13%  Similarity=0.113  Sum_probs=195.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc--CCCeEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  108 (316)
                      .||...|++++|+|++ .+|++|+.||.|++||+.++...           ........+|...|.+++|+|  ++++|+
T Consensus         8 ~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSN-----------WELSDSWRAHDSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCC-----------EEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred             cccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCc-----------ceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence            4799999999999998 89999999999999999865410           011122267899999999999  588888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccCCe
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      ++ .|+.|++||++.+.....       ....+....+.+|...  |.+++| +|+  +.++++++.||.|++||+++++
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~-------~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECS-------GRRWNKLCTLNDSKGS--LYSVKF-APAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTS-------SCSEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             EEcCCCeEEEEecCCCccccc-------ccCcceeeeecccCCc--eeEEEE-cCCCCCcEEEEecCCCcEEEecCCChH
Confidence            74 799999999987621000       0000235566777766  999999 898  9999999999999999998876


Q ss_pred             eEEEee-------------cCccceEEEEEcCC---CCeEEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCC
Q 021160          186 LVRLMV-------------GDRHVVNQLEPHPH---IPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       186 ~~~~~~-------------~~~~~v~~~~~~p~---~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~  246 (316)
                      .+..+.             .|...+.+++|+|+   +..+++++.|+.+.+|+...+.   ...+.+|...+..+. +++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~~p  224 (351)
T 3f3f_A          146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS-WAP  224 (351)
T ss_dssp             CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE-ECC
T ss_pred             HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE-ECC
Confidence            543322             57788999999997   8899999999999888887765   556777888887776 677


Q ss_pred             CC----ceeEEecCCCeEEEEEecccC-----------------------------------------------------
Q 021160          247 ED----HSRITLTPDVIMHVLRLQRRQ-----------------------------------------------------  269 (316)
Q Consensus       247 ~~----~~~~s~~~d~~~~~w~~~~~~-----------------------------------------------------  269 (316)
                      ++    .++++++.|+.|++|++..+.                                                     
T Consensus       225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred             CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence            66    799999999999999998631                                                     


Q ss_pred             --cceeE-EeecccccccccCCCCeEEEEeccCCCC
Q 021160          270 --TLAYR-ERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       270 --~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                        ..+.. .+.|++..++++..+|.|.+|++..++.
T Consensus       305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence              11222 6888888999999999999999987543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-30  Score=219.97  Aligned_cols=228  Identities=11%  Similarity=0.143  Sum_probs=181.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||+...........         .+|...|++++|+|+  + .+|++|+.||.|++||+.+++..         
T Consensus        32 dg~i~iw~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~---------   92 (379)
T 3jrp_A           32 DKTIKIFEVEGETHKLIDTL---------TGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWS---------   92 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEE---------CCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEE---------
T ss_pred             CCcEEEEecCCCcceeeeEe---------cCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCcee---------
Confidence            68899999985433222222         248899999999977  6 89999999999999999987521         


Q ss_pred             eecccccccCCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                          .......|...|.+++|+|+  +.++++ +.|+.|++||+.....              .....+..|...  |.+
T Consensus        93 ----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------------~~~~~~~~~~~~--v~~  152 (379)
T 3jrp_A           93 ----QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------------TSPIIIDAHAIG--VNS  152 (379)
T ss_dssp             ----EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--------------CCEEEEECCTTC--EEE
T ss_pred             ----EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--------------eeeEEecCCCCc--eEE
Confidence                11222678899999999999  887777 5799999999987610              133455677765  999


Q ss_pred             EEEecC-------------CCcEEEEeccCCeEEEEeccCCe----eEEEeecCccceEEEEEcCC---CCeEEEEeCCC
Q 021160          157 VNFFGP-------------NDEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPH---IPMFATCGIEK  216 (316)
Q Consensus       157 ~~~~~~-------------~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~p~---~~~l~s~~~d~  216 (316)
                      ++| +|             ++.++++++.|+.|++||+++++    ....+.+|...|.+++|+|+   +++|++++.|+
T Consensus       153 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          153 ASW-APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             EEE-CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             EEE-cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            999 78             69999999999999999998764    45677789999999999999   88999999999


Q ss_pred             cEEEecCCCCC------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          217 TVKLWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       217 ~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      .|++||++...      ......+...+..+. +++++.++++++.|+.+++|++.....
T Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEE-ECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             EEEEEeCCCCCccceeeeeccccCCCcEEEEE-EcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence            99999998763      233334666665555 889999999999999999999986543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-30  Score=217.89  Aligned_cols=257  Identities=8%  Similarity=-0.046  Sum_probs=184.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.             ...|.++.|+|.    +++++.|+.|++|+..............    
T Consensus        57 Dg~v~iwd~~~~~~~~~~~-------------~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~----  115 (343)
T 3lrv_A           57 DGALHFTQLKDSKTITTIT-------------TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNK----  115 (343)
T ss_dssp             TTEEEEEEESSSSCEEEEE-------------EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCC----
T ss_pred             CCcEEEEECCCCcEEEEEe-------------cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcc----
Confidence            6899999999887655554             235778889885    9999999999999876321100000000    


Q ss_pred             cccccccCCCcccEEEEEEcc--CCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSN--TSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~--~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                       ........|...|.+++|+|  +++++++ +.|++|++||++++                +....+..+.. ..+.+++
T Consensus       116 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----------------~~~~~~~~~~~-~~i~~~~  177 (343)
T 3lrv_A          116 -VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD----------------SQYIVHSAKSD-VEYSSGV  177 (343)
T ss_dssp             -EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS----------------CEEEEECCCSS-CCCCEEE
T ss_pred             -eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC----------------cEEEEEecCCC-CceEEEE
Confidence             12222245678899999999  9998887 47999999999887                45444433322 2399999


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeE-EEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC--
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--  233 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~-~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--  233 (316)
                      | +|++.+|++|+.||.|++||+++++.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||++..+ ...+..  
T Consensus       178 ~-~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~  255 (343)
T 3lrv_A          178 L-HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT  255 (343)
T ss_dssp             E-CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB
T ss_pred             E-CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc
Confidence            9 999999999999999999999999887 78887 999999999999999999999 5599999999876 334433  


Q ss_pred             -Ccccce-eeeecCCCCceeEEecC-CCeEEEEEecccCcc-ee-----EEeec---ccccccccCCCCeEEEEeccC
Q 021160          234 -NAEKIM-KANKQGREDHSRITLTP-DVIMHVLRLQRRQTL-AY-----RERRY---NAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       234 -~~~~~~-~~~~~~~~~~~~~s~~~-d~~~~~w~~~~~~~~-~~-----~~~~~---~~~~~~~~~~~~~v~~~~~~~  299 (316)
                       +...+. ....+++++.++++++. |+.+++|++.+.... ..     ..+.+   +...+.....++.+.++-.++
T Consensus       256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence             222222 13448889999999888 999999999665332 11     13333   555666666667676665443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.1e-30  Score=210.93  Aligned_cols=250  Identities=12%  Similarity=0.123  Sum_probs=199.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+..           |...|.+++|+|++ .++++|+.|+.+++|++......      .    
T Consensus        38 dg~v~vw~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~------~----   95 (313)
T 3odt_A           38 DGTVRLWSKDDQWLGTVVYT-----------GQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSGE------D----   95 (313)
T ss_dssp             TSEEEEEEESSSEEEEEEEE-----------CSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTTS------C----
T ss_pred             CCcEEEEECCCCEEEEEeec-----------CCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCCC------C----
Confidence            68999999977665545443           67899999999998 89999999999999999865311      1    


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .... ..+|...|.+++|  ++.++++ +.|+.|++||  ..                .....+..|...  +.+++|.
T Consensus        96 -~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~----------------~~~~~~~~~~~~--v~~~~~~  151 (313)
T 3odt_A           96 -PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG----------------SLVYNLQAHNAS--VWDAKVV  151 (313)
T ss_dssp             -C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT----------------EEEEEEECCSSC--EEEEEEE
T ss_pred             -cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC----------------cEEEecccCCCc--eeEEEEc
Confidence             1122 2678999999999  4566666 5799999999  33                466778888866  9999995


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                      ++++.++++++.|+.|++||  ..+....+.. |...+.+++|+|++. +++++.|+.|++||++.++ +..+..|...+
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  228 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFV  228 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceE
Confidence            55999999999999999999  5667777776 889999999999988 8999999999999999877 66666788877


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEecccCccee----------EEeecccccccccCCCCeEEEEeccCCCCC
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLLGFSDSDAS  303 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  303 (316)
                      ..+. +++++ .+++++.|+.+++|++.+++....          ..+.|++. +.....+|.|.+|++..+...
T Consensus       229 ~~~~-~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          229 YCIK-LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             EEEE-ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred             EEEE-EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence            6666 67776 689999999999999877643221          14666666 445777889999999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=3.3e-30  Score=222.69  Aligned_cols=244  Identities=16%  Similarity=0.247  Sum_probs=194.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|  ++ .++++|+.||.|++||+.+++             
T Consensus       152 dg~i~iwd~~~~~~~~~~~-----------~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~-------------  204 (435)
T 1p22_A          152 DNTIKIWDKNTLECKRILT-----------GHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGE-------------  204 (435)
T ss_dssp             SSCEEEEESSSCCEEEEEC-----------CCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCC-------------
T ss_pred             CCeEEEEeCCCCeEEEEEc-----------CCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCc-------------
Confidence            6899999998876644442           47889999999  45 799999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCc---ceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~  157 (316)
                       ....+ .+|...|.+++|++  .++++ +.|+.|++||+.++                ...   ..+.+|...  |.++
T Consensus       205 -~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~--v~~~  262 (435)
T 1p22_A          205 -MLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP----------------TDITLRRVLVGHRAA--VNVV  262 (435)
T ss_dssp             -EEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS----------------SCCEEEEEECCCSSC--EEEE
T ss_pred             -EEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC----------------CCceeeeEecCCCCc--EEEE
Confidence             33333 67899999999974  46666 58999999999876                333   566778766  9999


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      +|   +++++++|+.||.|++||+++++.+..+.+|...|.+++|+  ++++++++.|+.|++||++++. +..+.+|..
T Consensus       263 ~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          263 DF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             EE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             Ee---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence            87   57899999999999999999999999999999999999994  6799999999999999999877 667777888


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCc--------cee---------EEeecccccccccCCCCeEEEEeccC
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT--------LAY---------RERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      .+..+.+   ++.++++++.|+.|++||+.....        ...         .....++..+.++..+|.|.+|++.+
T Consensus       338 ~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          338 LVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             CEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred             cEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence            8766663   778999999999999999876541        111         01222566788889999999999987


Q ss_pred             CCC
Q 021160          300 SDA  302 (316)
Q Consensus       300 ~~~  302 (316)
                      +..
T Consensus       415 ~~~  417 (435)
T 1p22_A          415 DPA  417 (435)
T ss_dssp             ---
T ss_pred             CCC
Confidence            654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.7e-31  Score=226.69  Aligned_cols=241  Identities=7%  Similarity=0.142  Sum_probs=184.2

Q ss_pred             CCCccceEEEEECC-CCCcEEEEEecCCcEEEEeCcC---CcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           31 PMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRK---CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        31 ~gh~~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      .+|.+.|++++|+| ++ .+|++|+.||.|++||+.+   +...            . ......|...|.+++|+|++.+
T Consensus        60 ~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~------------~-~~~~~~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           60 ENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVY------------S-SSLTYDCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             TTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCC------------S-CSEEEECSSCEEEEEECTTSSE
T ss_pred             cCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCccc------------c-eeeeccCCCCEEEEEEeCCCCE
Confidence            35899999999999 87 8999999999999999986   3200            0 0111258899999999999998


Q ss_pred             EEEe-cCCcEEEEEcC---CCCCCCCccCCccccccCCCcceeeCC--------c--CCceeeeEEE-ecCCCcEEEEec
Q 021160          107 LISY-NDELVYLFEKN---MGLGPSPLSLSPEDLQKREEPQVYSGH--------R--NSQTVKGVNF-FGPNDEYVMSGS  171 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~i~~~~~-~~~~~~~l~~~~  171 (316)
                      |+++ .|+.|++||++   .+                +....+.++        .  ....+.++.+ .++++.++++++
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQE----------------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT  189 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEET----------------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEeCCCEEEEEEeccccCC----------------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence            8874 79999999995   33                222222211        1  1123666663 167899999999


Q ss_pred             cCCeEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC-CCcccceeeee---c
Q 021160          172 DCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANK---Q  244 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~---~  244 (316)
                      .|+.|++||+++++++..+.+  |...|.+++|+|++++|++++.||.|++||++.++ +..+. .|...+..+.+   +
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence            999999999999999999988  88999999999999999999999999999999876 44432 46666666542   3


Q ss_pred             CCCCceeEEecCCCeEEEEEecccCcceeE------------------------------------EeecccccccccCC
Q 021160          245 GREDHSRITLTPDVIMHVLRLQRRQTLAYR------------------------------------ERRYNAADFESDEE  288 (316)
Q Consensus       245 ~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~  288 (316)
                      ++++.++++++.|+.|++||+.+++.....                                    .+. +...+.++..
T Consensus       270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~  348 (437)
T 3gre_A          270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA  348 (437)
T ss_dssp             CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence            457889999999999999999865422111                                    222 2356788888


Q ss_pred             CCeEEEEeccCCCC
Q 021160          289 EGETYLLGFSDSDA  302 (316)
Q Consensus       289 ~~~v~~~~~~~~~~  302 (316)
                      ++.|.+|++..+..
T Consensus       349 d~~i~~wd~~~~~~  362 (437)
T 3gre_A          349 TSSIVMFSLNELSS  362 (437)
T ss_dssp             GTEEEEEETTCGGG
T ss_pred             CCeEEEEECCCccc
Confidence            99999999987653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=6.3e-30  Score=213.38  Aligned_cols=239  Identities=13%  Similarity=0.157  Sum_probs=189.0

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||.+.|++++|+|+++++|++|+.|++|++||+.+.+..         ...+. ....+|...|.+++|+|++++|+++
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------~~~~~-~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------YGIPQ-RALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------SEEEE-EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------cceee-EEEeCCCCCEEEEEECCCCCEEEEE
Confidence            4799999999999986689999999999999999876421         11112 2237899999999999999988885


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE-E
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-R  188 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~-~  188 (316)
                       .|+.|++|+....                ........+...  +..+.+ ++++.++++++.|+.+++||+...... .
T Consensus       105 ~~d~~i~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A          105 SWDGTLRLWDLTTG----------------TTTRRFVGHTKD--VLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             ETTSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cccccceEEeeccc----------------ceeeeecCCCCc--eeEEEE-eecCccceeecCCCeEEEEEeCCCceEEE
Confidence             7999999999877                455555656544  777877 899999999999999999998866543 3


Q ss_pred             EeecCccceEEEEEcCCC--CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          189 LMVGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ...+|...+..++|++++  .++++++.|+.|++||++..+ ...+.+|...+..+. ++++++++++++.|+.+++||+
T Consensus       166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~s~Dg~i~iwd~  244 (340)
T 4aow_A          166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT-VSPDGSLCASGGKDGQAMLWDL  244 (340)
T ss_dssp             CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTCEEEEEET
T ss_pred             EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEe
Confidence            456788999999999875  458899999999999999887 566777888876666 7889999999999999999998


Q ss_pred             cccCcceeE---------EeecccccccccCCCCeEEEEeccCC
Q 021160          266 QRRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       266 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      .+.......         .+.|+...+. ...++.|.+|++..+
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          245 NEGKHLYTLDGGDIINALCFSPNRYWLC-AATGPSIKIWDLEGK  287 (340)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSSSSEEE-EEETTEEEEEETTTT
T ss_pred             ccCceeeeecCCceEEeeecCCCCceee-ccCCCEEEEEECCCC
Confidence            875433221         3555544443 445778999988654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=1.4e-30  Score=225.42  Aligned_cols=260  Identities=10%  Similarity=0.120  Sum_probs=185.8

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc------------ccEEEEE
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN------------IHITGLA   99 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~   99 (316)
                      .|.+.|++++|+|++ .+||+|+.||.|++||+.+++.....    ....+.......+|.            ..|.+++
T Consensus        26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSH----SRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CC----CCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcc----cccceeEecccccccccccccccccccCceEEEE
Confidence            367899999999998 89999999999999999876521000    000011122225677            8899999


Q ss_pred             EccCC--CeEEE-ecCCcEEEEEcCCCCCCC-----------------CccCCccccc------cCCCcce-eeCCcCCc
Q 021160          100 YSNTS--ELLIS-YNDELVYLFEKNMGLGPS-----------------PLSLSPEDLQ------KREEPQV-YSGHRNSQ  152 (316)
Q Consensus       100 ~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~-----------------~~~~~~~~~~------~~~~~~~-~~~~~~~~  152 (316)
                      |+|++  ..|++ +.|+.|++||+..+....                 ...+....+.      ...+... ..+|... 
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-  179 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH-  179 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC-
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc-
Confidence            99998  56666 589999999997632100                 0000000000      0000112 2567765 


Q ss_pred             eeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEE-------eecCccceEEEEEcCCC-CeEEEEeCCCcEEEecC
Q 021160          153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL-------MVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAP  223 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~-------~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~  223 (316)
                       |.+++| +|++.+|++| .|+.|++||+++ ++.+..       +.+|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus       180 -v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          180 -INSISI-NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             -CCEEEE-CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             -eEEEEE-cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence             999999 9999999999 799999999984 444442       45789999999999998 89999999999999999


Q ss_pred             CCCCC-----CCCCCCcc------------cceeeeecCCCCceeEEecCCCeEEEEEecc-cCcce-e-----------
Q 021160          224 MPTDF-----PPLPDNAE------------KIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQTLA-Y-----------  273 (316)
Q Consensus       224 ~~~~~-----~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~-~~~~~-~-----------  273 (316)
                      +.+..     ..+..|..            .+..+. +++++.++++++. +.+++||+.. ++... +           
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC  334 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence            88763     44555554            555554 8889999999998 9999999986 32211 1           


Q ss_pred             -------------EEeecccccccccCCCCeEEEEeccCCCC
Q 021160          274 -------------RERRYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       274 -------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                                   ..+.|++..+.++..+|.|++|++..+..
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                         35778888899999999999999987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=3.2e-30  Score=249.38  Aligned_cols=253  Identities=15%  Similarity=0.185  Sum_probs=209.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|+|++ .++++|+.|+.|++||+.+++             
T Consensus       636 d~~i~vw~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~-------------  690 (1249)
T 3sfz_A          636 DKTLQVFKAETGEKLLDIK-----------AHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGK-------------  690 (1249)
T ss_dssp             TSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------------
T ss_pred             CCeEEEEECCCCCEEEEec-----------cCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCc-------------
Confidence            6899999998876544432           488999999999999 899999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTS--ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                       ....+ .+|...|.+++|+|++  .+++++ .|+.|++||+.++                .....+.+|...  |.+++
T Consensus       691 -~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~  750 (1249)
T 3sfz_A          691 -LVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK----------------ECRNTMFGHTNS--VNHCR  750 (1249)
T ss_dssp             -EEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS----------------SEEEEECCCSSC--EEEEE
T ss_pred             -eEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc----------------chhheecCCCCC--EEEEE
Confidence             23333 6789999999999954  477774 7999999999988                677888899876  99999


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEee-----------------------------------------------
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-----------------------------------------------  191 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-----------------------------------------------  191 (316)
                      | +|+++++++++.||.|++||+.+++....+.                                               
T Consensus       751 ~-sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          751 F-SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             E-CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             E-ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence            9 9999999999999999999988765443321                                               


Q ss_pred             --------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160          192 --------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       192 --------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                              +|...|.+++|+|+++++++++.|+.|++|++.++. ...+.+|...+..+. +++++..+++++.|+.+++
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~-~spdg~~l~s~s~dg~v~v  908 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM-FSPDGSSFLTASDDQTIRV  908 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEE
T ss_pred             CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE-ECCCCCEEEEEeCCCeEEE
Confidence                    567789999999999999999999999999999876 666778888887766 7889999999999999999


Q ss_pred             EEecccC-----------------------------------------------cceeEEeecccccccccCCCCeEEEE
Q 021160          263 LRLQRRQ-----------------------------------------------TLAYRERRYNAADFESDEEEGETYLL  295 (316)
Q Consensus       263 w~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~  295 (316)
                      |++.+..                                               ......+.|++..++.+..+|.+++|
T Consensus       909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~  988 (1249)
T 3sfz_A          909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII  988 (1249)
T ss_dssp             EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred             EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence            9975420                                               11112567788888888889999999


Q ss_pred             eccCCC
Q 021160          296 GFSDSD  301 (316)
Q Consensus       296 ~~~~~~  301 (316)
                      +...+.
T Consensus       989 d~~~~~  994 (1249)
T 3sfz_A          989 ELPNNR  994 (1249)
T ss_dssp             ETTTTS
T ss_pred             EcCCCc
Confidence            987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=7e-30  Score=220.28  Aligned_cols=233  Identities=13%  Similarity=0.222  Sum_probs=181.0

Q ss_pred             ceeeEEEEeeCCC--------cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC
Q 021160            2 VLFNMLFDLRSDS--------ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         2 ~g~v~vwd~~~~~--------~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~   73 (316)
                      +|.|++||+....        ..+....         .+|...|.+++|+|++..+|++|+.||.|++|++..+....  
T Consensus       150 dg~V~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--  218 (430)
T 2xyi_A          150 SSDVLVFDYTKHPSKPEPSGECQPDLRL---------RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH--  218 (430)
T ss_dssp             SSCEEEEEGGGSCSSCCTTCCCCCSEEE---------ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG--
T ss_pred             CCcEEEEECCCcccccCccccCCCcEEe---------cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC--
Confidence            5889999998621        1112211         25888999999999984499999999999999998743100  


Q ss_pred             CCCCCceecccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC
Q 021160           74 SSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  151 (316)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (316)
                            ..........+|...|.+++|+| ++.+|+++ .|+.|++||++...             ..+....+..|...
T Consensus       219 ------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          219 ------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-------------TSKPSHTVDAHTAE  279 (430)
T ss_dssp             ------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-------------SSSCSEEEECCSSC
T ss_pred             ------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------CCcceeEeecCCCC
Confidence                  00011222367899999999999 45677774 79999999998751             01355667778866


Q ss_pred             ceeeeEEEecCCCc-EEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCC--
Q 021160          152 QTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT--  226 (316)
Q Consensus       152 ~~i~~~~~~~~~~~-~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~--  226 (316)
                        |.+++| +|++. ++++|+.||.|++||+++ ++++..+..|...|.+++|+|+++ +|++++.|+.|++||+...  
T Consensus       280 --v~~i~~-~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          280 --VNCLSF-NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             --EEEEEE-CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             --eEEEEe-CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence              999999 88887 688999999999999997 567888999999999999999996 5899999999999999762  


Q ss_pred             ------------C-CCCCCCCcccceeeeecCCCCc-eeEEecCCCeEEEEEeccc
Q 021160          227 ------------D-FPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       227 ------------~-~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~  268 (316)
                                  . +..+.+|...+..+. |++++. ++++++.|+.|++|++.+.
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHGGHTAKISDFS-WNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECCCCSSCEEEEE-ECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccCccccccCCcceEEEcCCCCCCceEEE-ECCCCCCEEEEEECCCCEEEeEcccc
Confidence                        2 344556777777776 677666 8999999999999998765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.6e-30  Score=214.66  Aligned_cols=223  Identities=11%  Similarity=0.052  Sum_probs=181.9

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+|...|++++|+|++ .+|++|+.||.|++||+.+++              ....+ .+|...|.+++|+|++++|+++
T Consensus        29 ~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~   92 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGE--------------RLGTL-DGHTGTIWSIDVDCFTKYCVTG   92 (369)
T ss_dssp             ECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCC--------------EEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCch--------------hhhhh-hhcCCcEEEEEEcCCCCEEEEE
Confidence            3799999999999998 899999999999999999876              23333 6789999999999999988874


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-----CeEEEEeccCC
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GHLFIWKKKGG  184 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~~wd~~~~  184 (316)
                       .|+.|++||+.++                +....+. +...  +.+++| +|++.++++++.+     +.|++||+..+
T Consensus        93 ~~dg~i~iwd~~~~----------------~~~~~~~-~~~~--v~~~~~-~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           93 SADYSIKLWDVSNG----------------QCVATWK-SPVP--VKRVEF-SPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ETTTEEEEEETTTC----------------CEEEEEE-CSSC--EEEEEE-CTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             eCCCeEEEEECCCC----------------cEEEEee-cCCC--eEEEEE-ccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence             7999999999887                5666666 5544  999999 9999999999998     99999998765


Q ss_pred             e-----------eEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEecCCC-CC-CCCCCCCcccceeeeecCCCCc
Q 021160          185 K-----------LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TD-FPPLPDNAEKIMKANKQGREDH  249 (316)
Q Consensus       185 ~-----------~~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  249 (316)
                      .           .+..+..|..  .+.+++|+|++++|++++.|+.|++||++. .. ...+..|...+..+. +++++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~  231 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ-FSPDLT  231 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE-ECTTSS
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE-ECCCCC
Confidence            3           3445556665  899999999999999999999999999998 33 556666777776666 788999


Q ss_pred             eeEEecCCCeEEEEEecccCcceeE---------EeecccccccccCCCC
Q 021160          250 SRITLTPDVIMHVLRLQRRQTLAYR---------ERRYNAADFESDEEEG  290 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  290 (316)
                      ++++++.|+.+++||+.+.+.....         .+.|+...+.....++
T Consensus       232 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred             EEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence            9999999999999999876433221         4556666666555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=3.6e-30  Score=238.91  Aligned_cols=234  Identities=17%  Similarity=0.244  Sum_probs=197.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +|...|.+++|+|++ .+|++|+.||.|++||+.+++              ....+ .+|..+|.+++|+|++++|+++ 
T Consensus        11 ~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~--------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQV--------------EVRSI-QVTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             EECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             cCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--------------eEEEE-ecCCCcEEEEEEeCCCCEEEEEe
Confidence            478999999999999 899999999999999999876              23333 5789999999999999988885 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRL  189 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~  189 (316)
                      .|+.|++||+.++                +....+.+|...  |.+++| +|++.+|++++.||.|++||+.++ .....
T Consensus        75 ~dg~i~vw~~~~~----------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           75 DDFRIRVFNYNTG----------------EKVVDFEAHPDY--IRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             TTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             CCCeEEEEECCCC----------------cEEEEEecCCCC--EEEEEE-eCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            7999999999988                677888889866  999999 999999999999999999999987 77788


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCc-ccceeeeecCC--CCceeEEecCCCeEEEEE
Q 021160          190 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA-EKIMKANKQGR--EDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~--~~~~~~s~~~d~~~~~w~  264 (316)
                      +.+|...|.+++|+| ++..|++++.|+.|++||+.... ...+..+. ..+.... +.+  ++.++++++.|+.+++|+
T Consensus       136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~i~~~d  214 (814)
T 3mkq_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWD  214 (814)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE-ECCSTTCCEEEEECTTSEEEEEE
T ss_pred             EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE-EEECCCCCEEEEEeCCCEEEEEE
Confidence            889999999999999 78899999999999999998765 33343333 4454444 565  888999999999999999


Q ss_pred             ecccCcc---------e-eEEeecccccccccCCCCeEEEEeccCCC
Q 021160          265 LQRRQTL---------A-YRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       265 ~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +.++...         + ...+.|++..+.++..+|.|.+|+...+.
T Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            8764322         1 22677888888888889999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=5e-30  Score=230.56  Aligned_cols=257  Identities=11%  Similarity=0.108  Sum_probs=202.1

Q ss_pred             ceeeEEEEeeCC----CcceEEEeccccccccCCCCccc-eEEEEECC--CCCcEEEEEecCCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSD----SATRLFYCSSFSENSKQPMNSIR-LNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~----~~~~~~~~~~~~~~~~~~gh~~~-v~~~~~~~--~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~   74 (316)
                      .|.|+|||+.+.    +....+           .+|... |++++|+|  ++ ++|++|+.||.|++||+.+++..    
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~-----------~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~----  101 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQF-----------TGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKES----  101 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEE-----------CTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGG----
T ss_pred             CCeEEEEECCCCCCccccceEE-----------ecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCccc----
Confidence            468999999876    433333           248889 99999999  98 89999999999999999755100    


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                        ..........+ ..|...|.+++|+|++++|+++ .+    +.|++||  .+                +....+.+|.
T Consensus       102 --~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~----------------~~~~~~~~~~  160 (615)
T 1pgu_A          102 --NSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG----------------NSLGEVSGHS  160 (615)
T ss_dssp             --TEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC----------------CEEEECCSCS
T ss_pred             --ccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC----------------CcceeeecCC
Confidence              00000022222 5688999999999999988875 44    5788887  33                4667788888


Q ss_pred             CCceeeeEEEecCCCc-EEEEeccCCeEEEEeccCCeeEEEeecCcc---ceEEEEEcCC-CCeEEEEeCCCcEEEecCC
Q 021160          150 NSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRH---VVNQLEPHPH-IPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~---~v~~~~~~p~-~~~l~s~~~d~~i~iwd~~  224 (316)
                      ..  |.+++| +|++. ++++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.|+.|++||++
T Consensus       161 ~~--v~~~~~-~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          161 QR--INACHL-KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             SC--EEEEEE-CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             cc--EEEEEE-CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            66  999999 89987 899999999999999999999999999998   9999999999 9999999999999999998


Q ss_pred             CCC-CCCC-C---CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE-------------Eeeccccccccc
Q 021160          225 PTD-FPPL-P---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-------------ERRYNAADFESD  286 (316)
Q Consensus       225 ~~~-~~~~-~---~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~-------------~~~~~~~~~~~~  286 (316)
                      +++ +..+ .   .|...+..+. +. ++.++++++.|+.+++|++.+++.....             ...+....+..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  315 (615)
T 1pgu_A          238 SGEFLKYIEDDQEPVQGGIFALS-WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL  315 (615)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEE-ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred             CCCEeEEecccccccCCceEEEE-Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence            887 4555 3   6778887777 55 8999999999999999999865432211             112256677777


Q ss_pred             CCCCeEEEEeccCC
Q 021160          287 EEEGETYLLGFSDS  300 (316)
Q Consensus       287 ~~~~~v~~~~~~~~  300 (316)
                      ..++.+++|+...+
T Consensus       316 ~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          316 SLDGTLNFYELGHD  329 (615)
T ss_dssp             ETTSCEEEEETTEE
T ss_pred             ECCCCEEEEECCCC
Confidence            88888999987653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=217.59  Aligned_cols=238  Identities=11%  Similarity=0.091  Sum_probs=190.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC---CC
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SE  105 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  105 (316)
                      +|...|.+++|+|++..++++|+.   |+.|++||+.+++.              ......+|...|.+++|+|+   +.
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~   81 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--------------KLLREIEKAKPIKCGTFGATSLQQR   81 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--------------EEEEEEEESSCEEEEECTTCCTTTC
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--------------cceeeecccCcEEEEEEcCCCCCCc
Confidence            489999999999998666677776   99999999998762              22222367889999999998   57


Q ss_pred             eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCC-CcceeeCCcCCceeeeEEEe-----cCCCcEEEEeccCCeEEE
Q 021160          106 LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFF-----GPNDEYVMSGSDCGHLFI  178 (316)
Q Consensus       106 ~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-----~~~~~~l~~~~~dg~v~~  178 (316)
                      +|++ +.|+.|++||+.++                . ....+.+|...  |.+++|.     +|++.+|++++.||.|++
T Consensus        82 ~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAP----------------EMPVYSVKGHKEI--INAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             CEEEEETTSCEEEECTTSC----------------SSCSEEECCCSSC--EEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             eEEEecCCCeEEEEeCCCC----------------CccEEEEEecccc--eEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence            7777 47999999999887                4 67788888876  9999652     688999999999999999


Q ss_pred             EeccCCe-eEEEeecCcc----ceEEEE----EcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCC---
Q 021160          179 WKKKGGK-LVRLMVGDRH----VVNQLE----PHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR---  246 (316)
Q Consensus       179 wd~~~~~-~~~~~~~~~~----~v~~~~----~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---  246 (316)
                      ||+.+++ .+..+..|.+    .+.+++    |+|++++|++++.|+.|++||++..+......|...+..+. +++   
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~-~~~~~~  222 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLE-FDRKDI  222 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE-ESCSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEE-cCCCCC
Confidence            9999887 6777766554    788888    78999999999999999999999887544455666776666 666   


Q ss_pred             CCceeEEecCCCeEEEEEecccCcc--------------eeE-Eeecccc-cccccCCCCeEEEEeccCCCC
Q 021160          247 EDHSRITLTPDVIMHVLRLQRRQTL--------------AYR-ERRYNAA-DFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       247 ~~~~~~s~~~d~~~~~w~~~~~~~~--------------~~~-~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      ++..+++++.|+.+++|++.+++..              +.. .+.|+.. .+.++..+|.|.+|++..+..
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            8899999999999999998764321              111 5777776 788889999999999986554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=209.36  Aligned_cols=254  Identities=13%  Similarity=0.182  Sum_probs=197.9

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +++.|+|||+.+.+..+.+..+         +|...|++++|+|++ ++|++|+.||.|++||+++++            
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~---------~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~------------  100 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQK------------  100 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE------------
T ss_pred             eCCEEEEEECCCCCEEEEEEec---------CCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCce------------
Confidence            3689999999998877776653         478899999999999 899999999999999999887            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        +.... .+|...+.++.+  ++.+++++ .++.+++|+.....               .....+.+|...  +..+.+
T Consensus       101 --~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~--~~~~~~  158 (318)
T 4ggc_A          101 --RLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE---------------HHVATLSGHSQE--VCGLRW  158 (318)
T ss_dssp             --EEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE
T ss_pred             --eEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCc---------------eeEEEEcCccCc--eEEEEE
Confidence              33333 677887777655  45677775 79999999987762               355667888866  999998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCee----EEEeecCccceEEEEEcCCCCeE---EEEeCCCcEEEecCCCCCCCCCC
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMF---ATCGIEKTVKLWAPMPTDFPPLP  232 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l---~s~~~d~~i~iwd~~~~~~~~~~  232 (316)
                       .+++.++++++.|+.|++||+.+++.    ......|.+.|.+++++|.+..+   ++++.++.|++||..........
T Consensus       159 -~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          159 -APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             -CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred             -cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence             89999999999999999999987653    34555678899999999987653   46678899999999887744444


Q ss_pred             CCcccceeeeecCCCCceeEE--ecCCCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEeccCC
Q 021160          233 DNAEKIMKANKQGREDHSRIT--LTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~s--~~~d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      .+...+.... +.+.+..+++  ++.|+.|++||+.+++..         +.. .+.|++..+++++.|+.|.+|++.+.
T Consensus       238 ~~~~~v~~~~-~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          238 DAHSQVCSIL-WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             ECSSCEEEEE-EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cceeeeeeee-ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            4555555555 5555555544  457999999998765332         222 68889999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8e-30  Score=219.93  Aligned_cols=251  Identities=18%  Similarity=0.211  Sum_probs=191.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  110 (316)
                      +|.+.|++++|+|+++.+|++++.||.|++|++.+......     +...........+|...+.+++|+|++. +|+++
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            48999999999998548999999999999999986321000     0000011122267899999999999998 88875


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEEeccCC---e
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGG---K  185 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~wd~~~~---~  185 (316)
                       .||.|++||+......         .........+.+|...  |.+++| +| ++.++++++.||.|++||++++   +
T Consensus       201 ~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~h~~~--v~~v~~-~p~~~~~l~s~~~dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          201 SDDHTICLWDINATPKE---------HRVIDAKNIFTGHTAV--VEDVAW-HLLHESLFGSVADDQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             CTTSCEEEEETTSCCBG---------GGEEECSEEECCCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred             eCCCeEEEEeCCCCCCC---------CceeccceeecCCCCC--EeeeEE-eCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence             6999999999874100         0000124556678766  999999 77 7889999999999999999987   5


Q ss_pred             eEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCC-ceeEEecCCCeEE
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGRED-HSRITLTPDVIMH  261 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~  261 (316)
                      .+..+..|...|++++|+|+++ +|++++.||.|++||++...  +..+..|...+..+. |++++ .++++++.|+.|+
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~-~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEE-ECSSCTTEEEEEETTSCCE
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEE-ECCCCCCEEEEEeCCCcEE
Confidence            7778889999999999999987 58899999999999998743  566667888887777 66655 5799999999999


Q ss_pred             EEEecccC-----------------------ccee-EEeecccc-cccccCCCCeEEEEeccCC
Q 021160          262 VLRLQRRQ-----------------------TLAY-RERRYNAA-DFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       262 ~w~~~~~~-----------------------~~~~-~~~~~~~~-~~~~~~~~~~v~~~~~~~~  300 (316)
                      +|++....                       ..+. ..+.|+.. .+.+...+|.|.+|++...
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99998621                       1111 25677776 7788889999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-30  Score=224.37  Aligned_cols=235  Identities=13%  Similarity=0.145  Sum_probs=175.6

Q ss_pred             ceeeEEEEeeC---CCcc-eEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCc---CCcccCCCC
Q 021160            2 VLFNMLFDLRS---DSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR---KCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~---~~~~-~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~---~~~~~~~~~   74 (316)
                      +|.|+|||+.+   .... .....          +|...|.+++|+|++ .+|++|+.||.|++||+.   +++......
T Consensus        85 dg~v~vwd~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  153 (437)
T 3gre_A           85 QGVIKIWNLKEIIVGEVYSSSLTY----------DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLN  153 (437)
T ss_dssp             TSEEEEEEHHHHHTTCCCSCSEEE----------ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred             CceEEEeECcccccCcccceeeec----------cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence            68999999977   3311 12222          278899999999988 899999999999999995   443211100


Q ss_pred             CCCCceecccccccCCCcccEEEEE--EccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC--Cc
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLA--YSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR  149 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  149 (316)
                      . ..+..+....  .++...+.++.  +++++.+++++ .|+.|++||++++                +.+..+.+  |.
T Consensus       154 ~-~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~h~  214 (437)
T 3gre_A          154 C-ECIRKINLKN--FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL----------------ERLQIIENSPRH  214 (437)
T ss_dssp             E-EEEEEEEGGG--GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC----------------CEEEEEECCGGG
T ss_pred             c-ceeEEEEccC--cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------------eeeEEEccCCCC
Confidence            0 0111111000  11556777777  56788877774 7999999999987                67788887  56


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEc----CCCCeEEEEeCCCcEEEecCC
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPH----PHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~----p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      ..  |.+++| +|++.+|++|+.||.|++||+++++++..+. .|...|.+++|+    |++.+|++++.|+.|++||++
T Consensus       215 ~~--v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          215 GA--VSSICI-DEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             CC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             Cc--eEEEEE-CCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            55  999999 9999999999999999999999999998886 788899999655    467789999999999999998


Q ss_pred             CCC-CCCC------------------------CC--CcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          225 PTD-FPPL------------------------PD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       225 ~~~-~~~~------------------------~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +++ ...+                        .+  |...+..+. +. ++.++++++.|+.|++|++.+++..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~-~~-~~~~l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS-VS-NDKILLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE-EE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE-EC-CceEEEecCCCCeEEEEECCCcccc
Confidence            654 2222                        12  455555555 44 6689999999999999999876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.6e-30  Score=219.04  Aligned_cols=231  Identities=12%  Similarity=0.138  Sum_probs=185.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC---
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP---   78 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~---   78 (316)
                      +|.|++|| .+.+....+.           +|...|.+++|+|++ .+|++++.|+.|++||+.+++....+.....   
T Consensus       129 dg~i~i~~-~~~~~~~~~~-----------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          129 NGELRLWN-KTGALLNVLN-----------FHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             TSCEEEEE-TTSCEEEEEC-----------CCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             CCeEEEEe-CCCCeeeecc-----------CCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            57899999 3333322221           378899999999998 8999999999999999988775443321111   


Q ss_pred             -------------ceec-------------------------ccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEE
Q 021160           79 -------------VDTF-------------------------CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE  119 (316)
Q Consensus        79 -------------~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd  119 (316)
                                   +...                         ........|...|.+++|+|++++|+++ .|+.|++||
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                         1000                         0111224688899999999999988875 799999999


Q ss_pred             cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEE
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ  199 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~  199 (316)
                      ++.+                +....+.+|...  +.+++| +|++ ++++++.|+.|++||+.+++.+..+..|...|.+
T Consensus       276 ~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  335 (425)
T 1r5m_A          276 GGNG----------------NSQNCFYGHSQS--IVSASW-VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA  335 (425)
T ss_dssp             SSSB----------------SCSEEECCCSSC--EEEEEE-ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CCCC----------------ccceEecCCCcc--EEEEEE-CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEE
Confidence            9887                677888888866  999999 8888 9999999999999999999999999999999999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEecCCCCC---------------------CCCCCCCcc--cceeeeecCCCCceeEEecC
Q 021160          200 LEPHPHIPMFATCGIEKTVKLWAPMPTD---------------------FPPLPDNAE--KIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       200 ~~~~p~~~~l~s~~~d~~i~iwd~~~~~---------------------~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~  256 (316)
                      ++|+|++++|++++.|+.|++||+....                     +..+..|..  .+..+. ++++++++++++.
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~  414 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS-WNCAGNKISVAYS  414 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE-ECTTSSEEEEEES
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE-ccCCCceEEEEec
Confidence            9999999999999999999999997544                     344556655  565555 8889999999999


Q ss_pred             CCeEEEEEec
Q 021160          257 DVIMHVLRLQ  266 (316)
Q Consensus       257 d~~~~~w~~~  266 (316)
                      |+.+++|++.
T Consensus       415 dg~i~iw~~~  424 (425)
T 1r5m_A          415 LQEGSVVAIP  424 (425)
T ss_dssp             SSCCEEEECC
T ss_pred             CceEEEEeec
Confidence            9999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=7.5e-30  Score=236.78  Aligned_cols=222  Identities=17%  Similarity=0.174  Sum_probs=188.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+..           |..+|.+++|+|++ .+|++|+.||.|++||+.+++             
T Consensus        34 ~g~v~iwd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~-------------   88 (814)
T 3mkq_A           34 SGRVEIWNYETQVEVRSIQV-----------TETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE-------------   88 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC-------------
T ss_pred             CCEEEEEECCCCceEEEEec-----------CCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-------------
Confidence            68999999988765554443           78899999999999 899999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ....+ .+|...|.+++|+|++.+|+++ .|+.|++||+.++.               .....+.+|...  +.+++| 
T Consensus        89 -~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---------------~~~~~~~~~~~~--v~~~~~-  148 (814)
T 3mkq_A           89 -KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---------------ALEQTFEGHEHF--VMCVAF-  148 (814)
T ss_dssp             -EEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---------------EEEEEEECCSSC--EEEEEE-
T ss_pred             -EEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---------------eEEEEEcCCCCc--EEEEEE-
Confidence             23333 6789999999999999988875 79999999998652               355677788866  999999 


Q ss_pred             cC-CCcEEEEeccCCeEEEEeccCCeeEEEeecCc-cceEEEEEcC--CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCc
Q 021160          161 GP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA  235 (316)
Q Consensus       161 ~~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~  235 (316)
                      +| ++..+++++.||.|++||+.+++....+..+. ..+..++|+|  ++++|++++.|+.|++||+..+. ...+.+|.
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  228 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM  228 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            78 88999999999999999999888877776654 8899999999  99999999999999999998876 55666677


Q ss_pred             ccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ..+..+. +++++.++++++.|+.+++|++.++.
T Consensus       229 ~~v~~~~-~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          229 SNVSFAV-FHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             SCEEEEE-ECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            7775555 88899999999999999999988754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-30  Score=237.10  Aligned_cols=236  Identities=14%  Similarity=0.154  Sum_probs=194.6

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC--CCeEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  108 (316)
                      .||.+.|++++|+|++ .+|++|+.||.|++||+..+...            .... ..+|...|.+++|+|+  +++|+
T Consensus         6 ~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~------------~~~~-l~~h~~~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            6 NAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHK------------LIDT-LTGHEGPVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             --CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEE------------EEEE-ECCCSSCEEEEEECCTTSCSEEE
T ss_pred             ccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCc------------ccee-ccCCcCceEEEEecCCCCCCEEE
Confidence            4799999999999999 89999999999999999844310            2222 2789999999999988  88888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCC--CcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccC
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~  183 (316)
                      ++ .||.|++||+.++                .  ....+.+|...  |.+++| +|+  +.++++|+.||.|++||+.+
T Consensus        72 s~s~Dg~I~vwd~~~~----------------~~~~~~~~~~h~~~--V~~v~~-sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           72 SCSYDGKVLIWKEENG----------------RWSQIAVHAVHSAS--VNSVQW-APHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             EEETTSCEEEEEEETT----------------EEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             EEeCCCeEEEEECCCC----------------cccccccccCCCCC--eEEEEE-CCCCCCCEEEEEeCCCcEEEEEeec
Confidence            74 7999999999876                3  55667778766  999999 898  99999999999999999987


Q ss_pred             C--eeEEEeecCccceEEEEEcC-------------CCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeee
Q 021160          184 G--KLVRLMVGDRHVVNQLEPHP-------------HIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANK  243 (316)
Q Consensus       184 ~--~~~~~~~~~~~~v~~~~~~p-------------~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~  243 (316)
                      +  .....+.+|...|.+++|+|             +++++++++.||.|++||++.+.     ...+.+|...+..+. 
T Consensus       133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~-  211 (753)
T 3jro_A          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-  211 (753)
T ss_dssp             SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-
T ss_pred             CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE-
Confidence            7  33456678999999999999             58899999999999999998763     345667888887776 


Q ss_pred             cCCC---CceeEEecCCCeEEEEEecccCc--------------ce-eEEeecccccccccCCCCeEEEEeccCC
Q 021160          244 QGRE---DHSRITLTPDVIMHVLRLQRRQT--------------LA-YRERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       244 ~~~~---~~~~~s~~~d~~~~~w~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      ++++   +.++++++.|+.+++|++..+..              .+ ...+.|++..+.++..+|.|++|++..+
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            6776   89999999999999999987521              11 1267888889999999999999998854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.4e-29  Score=216.96  Aligned_cols=243  Identities=13%  Similarity=0.205  Sum_probs=198.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+           .+|...|.+++|+  + .++++|+.||.|++||+.+++             
T Consensus       138 dg~i~vwd~~~~~~~~~~-----------~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~-------------  190 (445)
T 2ovr_B          138 DNTLKVWSAVTGKCLRTL-----------VGHTGGVWSSQMR--D-NIIISGSTDRTLKVWNAETGE-------------  190 (445)
T ss_dssp             TSCEEEEETTTCCEEEEC-----------CCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTE-------------
T ss_pred             CCcEEEEECCCCcEEEEE-----------cCCCCCEEEEEec--C-CEEEEEeCCCeEEEEECCcCc-------------
Confidence            689999999877654332           2488999999998  3 699999999999999999886             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       +...+ .+|...|.+++|+  +..+++ +.|+.|++||+.++                +....+.+|...  +.+++| 
T Consensus       191 -~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~----------------~~~~~~~~~~~~--v~~~~~-  247 (445)
T 2ovr_B          191 -CIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG----------------QCLHVLMGHVAA--VRCVQY-  247 (445)
T ss_dssp             -EEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -EEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC----------------cEEEEEcCCccc--EEEEEE-
Confidence             33333 6889999999996  455666 57999999999987                677888888866  999987 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                        ++.++++|+.||.|++||+++++.+..+.+|...|.+++|  ++.++++++.|+.|++||+++++ +..+.+|...+.
T Consensus       248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~  323 (445)
T 2ovr_B          248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS  323 (445)
T ss_dssp             --CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             --CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence              6889999999999999999999999999999999999999  78899999999999999999887 556666766665


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccCcceeE-----------EeecccccccccCCCCeEEEEeccCCC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ...   .++.++++++.|+.+++||+.+++.....           .....+..+.++..+|.|.+|++..+.
T Consensus       324 ~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          324 GME---LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             EEE---EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEE---EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc
Confidence            444   35679999999999999998765432211           223345678888899999999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=232.27  Aligned_cols=226  Identities=12%  Similarity=0.147  Sum_probs=182.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||+...........         .+|.++|++++|+|+  + ++|++|+.||.|++||+.+++.          
T Consensus        30 dg~I~vwd~~~~~~~~~~~l---------~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~----------   89 (753)
T 3jro_A           30 DKTIKIFEVEGETHKLIDTL---------TGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRW----------   89 (753)
T ss_dssp             TTEEEEEEEETTEEEEEEEE---------CCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEE----------
T ss_pred             CCcEEEEecCCCCCccceec---------cCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcc----------
Confidence            68999999985433222222         258999999999987  6 8999999999999999997752          


Q ss_pred             eecccccccCCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                         .......+|...|.+++|+|+  +.++++ +.|+.|++||++.+..              .....+.+|...  |.+
T Consensus        90 ---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------------~~~~~~~~~~~~--v~~  150 (753)
T 3jro_A           90 ---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------------TSPIIIDAHAIG--VNS  150 (753)
T ss_dssp             ---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--------------CCCEEEECCSSC--EEE
T ss_pred             ---cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--------------cceeEeecCCCc--eEE
Confidence               111222678999999999999  887777 4799999999987620              234456677765  999


Q ss_pred             EEEecC-------------CCcEEEEeccCCeEEEEeccCC----eeEEEeecCccceEEEEEcCC---CCeEEEEeCCC
Q 021160          157 VNFFGP-------------NDEYVMSGSDCGHLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPH---IPMFATCGIEK  216 (316)
Q Consensus       157 ~~~~~~-------------~~~~l~~~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~p~---~~~l~s~~~d~  216 (316)
                      ++| +|             ++.++++|+.||.|++||++++    .....+.+|...|.+++|+|+   +++|++++.||
T Consensus       151 l~~-~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          151 ASW-APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEE-CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEe-cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            999 77             5899999999999999999877    566778899999999999999   89999999999


Q ss_pred             cEEEecCCCCC------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          217 TVKLWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       217 ~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .|++||+..+.      ......|...+..+. +++++.++++++.||.|++|++...
T Consensus       230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~-~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEE-ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEEecCCCCCCcceeEEeccCCCCCceEEEE-EcCCCCEEEEEcCCCEEEEEecCCC
Confidence            99999998763      333344666665555 7889999999999999999998854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=4.4e-29  Score=216.29  Aligned_cols=242  Identities=16%  Similarity=0.267  Sum_probs=196.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|++   ..+++|+.||.|++||+++++             
T Consensus       178 dg~i~vwd~~~~~~~~~~~-----------~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~-------------  230 (445)
T 2ovr_B          178 DRTLKVWNAETGECIHTLY-----------GHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQ-------------  230 (445)
T ss_dssp             TSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCC-------------
T ss_pred             CCeEEEEECCcCcEEEEEC-----------CCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCc-------------
Confidence            6899999998876544332           4788999999964   689999999999999999876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       ....+ .+|...|.+++|  ++.++++ +.|+.|++||++++                +....+.+|...  +.+++| 
T Consensus       231 -~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~-  287 (445)
T 2ovr_B          231 -CLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE----------------TCLHTLQGHTNR--VYSLQF-  287 (445)
T ss_dssp             -EEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT----------------EEEEEECCCSSC--EEEEEE-
T ss_pred             -EEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC----------------cEeEEecCCCCc--eEEEEE-
Confidence             22233 678899999999  5666666 57999999999887                677888888866  999987 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC---Ccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD---NAE  236 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~  236 (316)
                        ++.++++++.|+.|++||+++++.+..+.+|...+.++.++  ++++++++.||.|++||+++++ +..+..   |..
T Consensus       288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  363 (445)
T 2ovr_B          288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS  363 (445)
T ss_dssp             --CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC
Confidence              68899999999999999999999999999999999888875  5699999999999999998876 444443   666


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCcce--------------eE-EeecccccccccCCCCe----EEEEec
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA--------------YR-ERRYNAADFESDEEEGE----TYLLGF  297 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~----v~~~~~  297 (316)
                      .+..+.+   ++.++++++.|+.|++|++.+++...              .. .+.|++..++.+..+|.    ++++|+
T Consensus       364 ~v~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          364 AVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             CEEEEEE---CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CEEEEEE---CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            6665553   46799999999999999988764322              11 57778888888877776    999998


Q ss_pred             cCC
Q 021160          298 SDS  300 (316)
Q Consensus       298 ~~~  300 (316)
                      +..
T Consensus       441 ~~~  443 (445)
T 2ovr_B          441 DVD  443 (445)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=7.9e-30  Score=218.02  Aligned_cols=221  Identities=15%  Similarity=0.226  Sum_probs=179.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|++   .++++|+.||.|++||++...             
T Consensus       155 dg~i~iwd~~~~~~~~~~~-----------~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~-------------  207 (401)
T 4aez_A          155 NGLVDIYDVESQTKLRTMA-----------GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIAN-------------  207 (401)
T ss_dssp             TSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS-------------
T ss_pred             CCeEEEEECcCCeEEEEec-----------CCCCceEEEEECC---CEEEEEcCCCCEEEEecccCc-------------
Confidence            6889999998776544432           3788999999953   699999999999999998543             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .......+|...|.+++|+|++++|+++ .|+.|++||++++                .....+..|...  |.+++| 
T Consensus       208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~-  267 (401)
T 4aez_A          208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----------------IPKFTKTNHNAA--VKAVAW-  267 (401)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----------------SEEEEECCCSSC--CCEEEE-
T ss_pred             -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----------------CccEEecCCcce--EEEEEE-
Confidence             1222236789999999999999988885 7999999999887                677778888866  999999 


Q ss_pred             cCCC-cEEEEec--cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE--eCCCcEEEecCCCCC---CCCCC
Q 021160          161 GPND-EYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC--GIEKTVKLWAPMPTD---FPPLP  232 (316)
Q Consensus       161 ~~~~-~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~--~~d~~i~iwd~~~~~---~~~~~  232 (316)
                      +|++ .++++++  .|+.|++||+.+++.+..+. +...|.+++|+|++++++++  +.|+.|++|++..+.   ...+.
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~  346 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP  346 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec
Confidence            7865 5666654  79999999999999988886 56789999999999999884  489999999998864   33355


Q ss_pred             CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          233 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +|...+..+. +++++.++++++.|+.+++|++.+++..
T Consensus       347 ~h~~~v~~~~-~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          347 AHDTRVLYSA-LSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             CCSSCCCEEE-ECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             CCCCCEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            7777776666 7889999999999999999999887544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.9e-30  Score=250.96  Aligned_cols=247  Identities=10%  Similarity=0.067  Sum_probs=208.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+           .+|...|++++|+|++ .++++++.||.|++||+.+++..           
T Consensus       982 ~g~i~i~d~~~~~~~~~~-----------~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~----------- 1038 (1249)
T 3sfz_A          982 DGAIKIIELPNNRVFSSG-----------VGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV----------- 1038 (1249)
T ss_dssp             TSCCEEEETTTTSCEEEC-----------CCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE-----------
T ss_pred             CCCEEEEEcCCCceeeec-----------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE-----------
Confidence            578999999876543322           2488999999999999 89999999999999999987621           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                          . ...|...+.+++|+|++.+++++.|+.|++||+.++                +....+.+|...  |.+++| +
T Consensus      1039 ----~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-s 1094 (1249)
T 3sfz_A         1039 ----F-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG----------------RIERDFTCHQGT--VLSCAI-S 1094 (1249)
T ss_dssp             ----C-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT----------------CCCEEEECCSSC--CCCEEE-C
T ss_pred             ----E-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC----------------ceeEEEcccCCc--EEEEEE-C
Confidence                1 257889999999999887777789999999999988                678889999876  999999 9


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC---------
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL---------  231 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~---------  231 (316)
                      |++.++++++.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++ ...+         
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1174 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-----
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999876 3333         


Q ss_pred             CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcce----------eEEeecccccccccCCCCeEEEEecc
Q 021160          232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA----------YRERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      ..|...+..+. +++++.++++++  +.+++|++.+++...          ...++|++..+.+.+.+|.+++|++.
T Consensus      1175 ~~~~~~v~~l~-fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1175 ATHGGWVTDVC-FSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             --CCSCCCEEE-ECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             cccCceEEEEE-ECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            45666776666 888999998886  899999987653321          12678888888889999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=210.87  Aligned_cols=234  Identities=14%  Similarity=0.187  Sum_probs=181.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccc--cccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSE--NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~--~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+.+......+.......  .....+|...|.+++|+|++..+|++++.||.|++||+.+++.          
T Consensus        65 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------  134 (408)
T 4a11_B           65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT----------  134 (408)
T ss_dssp             TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE----------
T ss_pred             CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc----------
Confidence            6889999999877655554321111  1112358999999999995548999999999999999998762          


Q ss_pred             eecccccccCCCcccEEEEEEccCC---CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTS---ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                          ....  .+...+.++.|++.+   .++++ +.|+.|++||++++                .....+.+|...  |.
T Consensus       135 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~--v~  190 (408)
T 4a11_B          135 ----ADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG----------------SCSHILQGHRQE--IL  190 (408)
T ss_dssp             ----EEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------------CCCEEECCCCSC--EE
T ss_pred             ----ceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------------ceeeeecCCCCc--EE
Confidence                2111  256778999999855   36776 47999999999987                677888888866  99


Q ss_pred             eEEEecCCCc-EEEEeccCCeEEEEeccCCe-eEEEe---------------ecCccceEEEEEcCCCCeEEEEeCCCcE
Q 021160          156 GVNFFGPNDE-YVMSGSDCGHLFIWKKKGGK-LVRLM---------------VGDRHVVNQLEPHPHIPMFATCGIEKTV  218 (316)
Q Consensus       156 ~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~-~~~~~---------------~~~~~~v~~~~~~p~~~~l~s~~~d~~i  218 (316)
                      +++| +|++. ++++++.||.|++||+++++ .+..+               ..|...|.+++|+|++++|++++.|+.|
T Consensus       191 ~~~~-~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          191 AVSW-SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEE-CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEE-CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            9999 89888 58999999999999998765 34444               5688899999999999999999999999


Q ss_pred             EEecCCCCC-CC-----------------------------------------------CCCCCcccceeeeecCCCCce
Q 021160          219 KLWAPMPTD-FP-----------------------------------------------PLPDNAEKIMKANKQGREDHS  250 (316)
Q Consensus       219 ~iwd~~~~~-~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~  250 (316)
                      ++||+.+++ ..                                               .+.+|...+..+. +++++.+
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~-~s~~~~~  348 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV-FQSNFQE  348 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE-EETTTTE
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE-EcCCCCE
Confidence            999998754 11                                               1234556665555 7888999


Q ss_pred             eEEecCCCeEEEEEecccCcc
Q 021160          251 RITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       251 ~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +++++.|+.+++|++.+.+..
T Consensus       349 l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          349 LYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             EEEEETTSCEEEEEECC----
T ss_pred             EEEECCCCeEEEEeCCCCCcc
Confidence            999999999999999987554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=213.73  Aligned_cols=201  Identities=11%  Similarity=0.094  Sum_probs=161.0

Q ss_pred             CCccceEEEEECCCCCcE-EEEEecCCcEEEEeCc--CCcccCCCCCCCCceeccccccc-CCCcccEEEEEEccCCCeE
Q 021160           32 MNSIRLNAIVIDPRNPNY-FAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~-l~~g~~dg~v~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l  107 (316)
                      +|.+.|++++|+|++ .+ +++|+.||.|++||+.  +++              +...+. ..|...|.+++|+|++++|
T Consensus       100 ~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~--------------~~~~~~~~~~~~~v~~~~~sp~~~~l  164 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKN--------------VLKLRKRFCFSKRPNAISIAEDDTTV  164 (450)
T ss_dssp             CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSS--------------CEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCc--------------eeeeeecccCCCCceEEEEcCCCCEE
Confidence            567789999999999 66 5899999999999998  665              222221 2456889999999999988


Q ss_pred             EEe-cCCcEEEEEcCCCCCCCCccCCccccccCC-CcceeeCCcCCceeeeEEEecCC---CcEEEEeccCCeEEEEecc
Q 021160          108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKK  182 (316)
Q Consensus       108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~~wd~~  182 (316)
                      +++ .++.|++|++..+..             .. ....+.+|...  |.+++| +|+   +.+|++++.|+.|++||+.
T Consensus       165 ~~~~~~g~v~~~~~~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          165 IIADKFGDVYSIDINSIPE-------------EKFTQEPILGHVSM--LTDVHL-IKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EEEETTSEEEEEETTSCCC-------------SSCCCCCSEECSSC--EEEEEE-EECTTSCEEEEEEETTSCEEEEEES
T ss_pred             EEEeCCCcEEEEecCCccc-------------ccccceeeecccCc--eEEEEE-cCCCCCCcEEEEEcCCCcEEEEECC
Confidence            875 799999999987610             01 22367778866  999999 899   9999999999999999999


Q ss_pred             CCeeEEE-eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-------------------------Cc
Q 021160          183 GGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-------------------------NA  235 (316)
Q Consensus       183 ~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-------------------------~~  235 (316)
                      +++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++ +..+..                         ..
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            9988877 56899999999999 99999999999999999998876 332221                         11


Q ss_pred             ccceeeeecCCCCceeEEec-CCCeEEEEEe
Q 021160          236 EKIMKANKQGREDHSRITLT-PDVIMHVLRL  265 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~-~d~~~~~w~~  265 (316)
                      ..+..+ .+.++++++++++ .++.|++|++
T Consensus       308 ~~v~~i-~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKI-IKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEE-EECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEE-EEeCCCCEEEEEECCCCeEEEEEe
Confidence            223333 4667888888888 8999999999

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=7e-29  Score=207.27  Aligned_cols=220  Identities=11%  Similarity=0.033  Sum_probs=173.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCc-EEEEEecCCcEEEEeC-cCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN-YFAVGGSDEYARVYDI-RKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~~g~~dg~v~~wd~-~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+.+.+........        .+|...|.+++|+|++ . +|++|+.||.|++||+ .+++.          
T Consensus        32 d~~v~iw~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~----------   92 (342)
T 1yfq_A           32 DGSLTVYKFDIQAKNVDLLQS--------LRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF----------   92 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEE--------EECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSSE----------
T ss_pred             CCeEEEEEeCCCCccccceee--------eecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCce----------
Confidence            689999999987622111111        0278899999999998 8 9999999999999999 76641          


Q ss_pred             eecccccccCC--CcccEEEEEEccCCCeEEE-ecCCcEEEEEcCC---------CCCCCCccCCccccccCCCcceeeC
Q 021160           80 DTFCPRHLIGK--NNIHITGLAYSNTSELLIS-YNDELVYLFEKNM---------GLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        80 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                           ..+ .+  |...|.+++|+| +.++++ +.|+.|++||+++         .                +....+. 
T Consensus        93 -----~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~-  148 (342)
T 1yfq_A           93 -----QAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN----------------LNSNNTK-  148 (342)
T ss_dssp             -----EEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE----------------SCSSSSS-
T ss_pred             -----Eec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC----------------CeeeEEe-
Confidence                 122 56  899999999999 887777 5799999999986         4                4455555 


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-Ce--eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecC
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GK--LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~--~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~  223 (316)
                      +...  +.+++| ++++  +++++.++.|++||+++ ++  .......|...+.+++|+| +++++++++.||.|++|++
T Consensus       149 ~~~~--v~~~~~-~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          149 VKNK--IFTMDT-NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             SCCC--EEEEEE-CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             eCCc--eEEEEe-cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence            5544  999999 7776  99999999999999987 54  3334456788999999999 9999999999999999998


Q ss_pred             CCC------C-CCCCCCCcc---------cceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          224 MPT------D-FPPLPDNAE---------KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       224 ~~~------~-~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ...      . ...+..|..         .+..+. +++++.++++++.|+.+++||+.+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~i~vwd~~~~~~  285 (342)
T 1yfq_A          224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE-FSPRHKFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCcccccccceeeecccccccccccceeEEEEE-EcCCCCEEEEecCCceEEEEcCccHhH
Confidence            765      3 334444433         555554 788999999999999999999987644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=6.1e-29  Score=216.44  Aligned_cols=233  Identities=12%  Similarity=0.174  Sum_probs=179.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC--CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC--
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT--   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~--   77 (316)
                      +|.|++||+++.+....+.           +|...|.+++|++  ++ .++++|+.|+.|++||+++.+.........  
T Consensus       182 dg~i~vwd~~~~~~~~~~~-----------~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  249 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTHVFE-----------GHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY  249 (464)
T ss_dssp             TSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred             CCCEEEEECCCCcEEEEEC-----------CCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence            6899999998876544432           4788999999984  55 899999999999999998776332211110  


Q ss_pred             Cce------ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC
Q 021160           78 PVD------TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN  150 (316)
Q Consensus        78 ~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (316)
                      +..      .........+|...+.++  ++++.+++++ .|+.|++||+.++                +.+..+.+|..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~----------------~~~~~~~~~~~  311 (464)
T 3v7d_B          250 PLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM----------------KCLYILSGHTD  311 (464)
T ss_dssp             SEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT----------------EEEEEECCCSS
T ss_pred             ceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEecCCCC
Confidence            000      000112236788888887  5677877774 7999999999887                67788888886


Q ss_pred             CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160          151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~  230 (316)
                      .  |.+++| +|++.++++|+.||.|++||+++++++..+.+|...|.+++|+  +++|++++.||.|++||+.+.....
T Consensus       312 ~--v~~~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          312 R--IYSTIY-DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             C--EEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             C--EEEEEE-cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            6  999999 9999999999999999999999999999999999999999997  4789999999999999998865221


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .. +.........+.+++.++++++ |+.+++|++.+++..
T Consensus       387 ~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          387 SY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             ee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence            11 2222334444777888898888 899999999887544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.4e-29  Score=212.23  Aligned_cols=183  Identities=8%  Similarity=0.060  Sum_probs=145.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+  .          |...|.+++|+|++ +++++++. +.+++|+..+++.            
T Consensus       156 d~~i~iwd~~~~~~~~~~--~----------~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~------------  209 (365)
T 4h5i_A          156 PAIMRIIDPSDLTEKFEI--E----------TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSC------------  209 (365)
T ss_dssp             SCEEEEEETTTTEEEEEE--E----------CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCE------------
T ss_pred             CCEEEEeECCCCcEEEEe--C----------CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcc------------
Confidence            578999999887654332  2          56789999999999 89998875 4566777666652            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCC----cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                       ........|...|.+++|+|++++++++ .|+    .+++|++....            ........+.+|...  |++
T Consensus       210 -~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~--V~~  274 (365)
T 4h5i_A          210 -IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN------------TSVLRSKQVTNRFKG--ITS  274 (365)
T ss_dssp             -EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE------------EEEEEEEEEESSCSC--EEE
T ss_pred             -eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce------------ecceeeeeecCCCCC--eEe
Confidence             1222336788899999999999977774 455    57888876541            000123456677766  999


Q ss_pred             EEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          157 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      ++| +|+|++|++|+.|+.|+|||+++++++..+ .+|...|++++|+|++++||++|.|++|+||++...
T Consensus       275 ~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          275 MDV-DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEE-CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999 999999999999999999999999999875 789999999999999999999999999999999654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9.1e-30  Score=216.97  Aligned_cols=239  Identities=11%  Similarity=0.010  Sum_probs=157.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC--------CCCcEEEEEecCCcEEEEeCcCCcccCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--------RNPNYFAVGGSDEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--------~~~~~l~~g~~dg~v~~wd~~~~~~~~~~   73 (316)
                      +++|+|||+++.+..........      .||.+.|++++|+|        ++ ++||+|+.|++|+|||+.++.     
T Consensus       110 d~~v~lw~~~~~~~~~~~~~~~~------~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~-----  177 (393)
T 4gq1_A          110 DNTVRLIITKNETIITQHVLGGK------SGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG-----  177 (393)
T ss_dssp             TSCEEEEEEETTEEEEEEEECTT------TSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE-----
T ss_pred             CCcEEEEECCCCccceeeeeccc------CCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc-----
Confidence            68899999998765444333322      47999999999997        56 899999999999999998765     


Q ss_pred             CCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccc---------cccCCCc
Q 021160           74 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPED---------LQKREEP  142 (316)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~  142 (316)
                               +.... ..|...+.+++|+|++. +|+++ .|++|++||++++............         .......
T Consensus       178 ---------~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          178 ---------PILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             ---------EEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             ---------eeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence                     22222 56778999999999885 67774 7999999999876421111000000         0000111


Q ss_pred             ceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC------------------
Q 021160          143 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP------------------  204 (316)
Q Consensus       143 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p------------------  204 (316)
                      ....+|...  +.++.|+++++..+++++.|+.+++||+..++....+..|...+..+.+.|                  
T Consensus       248 ~~~~~~~~~--v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          248 CHSSGIASS--LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ----CCSSS--CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeccccccc--ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence            123455544  899999779999999999999999999998877766666555444443333                  


Q ss_pred             --CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          205 --HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       205 --~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                        ++.++++|+.|+.|++||+..+. ...+..|...|..++ |+++++++++++.+| +.+|++.
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva-fspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC-WHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE-ECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE-EcCCCCEEEEEeCCC-eEEEEEe
Confidence              23357788899999999998876 445556777777666 899999999998666 5666654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.1e-28  Score=211.01  Aligned_cols=243  Identities=12%  Similarity=0.064  Sum_probs=188.6

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCeEEEe-cCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~  113 (316)
                      ....++++|+...++++++.||.|++|++......     .      .......+|...|.+++|+| ++++|+++ .|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----D------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----C------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----C------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence            45568899977445556889999999999654311     0      11122378999999999999 88888885 799


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCeeEEEe--
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM--  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~~~--  190 (316)
                      .|++||+..+....         ........+.+|...  |.+++| +|++ .+|++++.|+.|++||+.+++.+..+  
T Consensus       105 ~v~vw~~~~~~~~~---------~~~~~~~~~~~h~~~--v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A          105 TVMVWEIPDGGLVL---------PLREPVITLEGHTKR--VGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             EEEEEECCTTCCSS---------CBCSCSEEEECCSSC--EEEEEE-CSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             eEEEEEccCCCCcc---------ccCCceEEecCCCCe--EEEEEE-CcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            99999998762100         000246778889866  999999 8887 69999999999999999999999999  


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCceeEEe---cCCCeEEEEEe
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHSRITL---TPDVIMHVLRL  265 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~---~~d~~~~~w~~  265 (316)
                      ..|...|.+++|+|++++|++++.|+.|++||++.++ +..+ ..|.........+.+++.+++++   +.|+.+++||+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            7899999999999999999999999999999999876 4455 55665533334477889999998   89999999999


Q ss_pred             cccCcce------------eEEeeccccccc-ccCCCCeEEEEeccCCC
Q 021160          266 QRRQTLA------------YRERRYNAADFE-SDEEEGETYLLGFSDSD  301 (316)
Q Consensus       266 ~~~~~~~------------~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  301 (316)
                      .....+.            ...+.|+...+. ++..++.|.+|++..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            8754311            115677777775 55678899999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=8.8e-29  Score=222.47  Aligned_cols=266  Identities=12%  Similarity=0.080  Sum_probs=192.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCcc---ceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSI---RLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~---~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      +|.|++||+.+.+....+.           +|..   .|.+++|+|+ + ++|++++.|+.|++||+++++.        
T Consensus       182 d~~v~vwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~--------  241 (615)
T 1pgu_A          182 DGSVVFYQGPPFKFSASDR-----------THHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEF--------  241 (615)
T ss_dssp             TTEEEEEETTTBEEEEEEC-----------SSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCE--------
T ss_pred             CCcEEEEeCCCcceeeeec-----------ccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCE--------
Confidence            5889999987765543332           3677   8999999999 7 8999999999999999998762        


Q ss_pred             CceecccccccC---CCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCC--------------------------
Q 021160           78 PVDTFCPRHLIG---KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPS--------------------------  127 (316)
Q Consensus        78 ~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~--------------------------  127 (316)
                            ...+..   .|...|.+++|+ ++++|+++ .|+.|++||++++....                          
T Consensus       242 ------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  314 (615)
T 1pgu_A          242 ------LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS  314 (615)
T ss_dssp             ------EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred             ------eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence                  222213   788899999999 88877774 79999999998653100                          


Q ss_pred             ---CccCCccccccCCCcceeeCCcCC-----------------------------------------------------
Q 021160          128 ---PLSLSPEDLQKREEPQVYSGHRNS-----------------------------------------------------  151 (316)
Q Consensus       128 ---~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------  151 (316)
                         ...+..+++.+.+....+.+|...                                                     
T Consensus       315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~  394 (615)
T 1pgu_A          315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT  394 (615)
T ss_dssp             EETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred             EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCC
Confidence               011111112111222222222111                                                     


Q ss_pred             ----------------------------------------------------ceeeeEEEecCCCcEEEEecc-CCeEEE
Q 021160          152 ----------------------------------------------------QTVKGVNFFGPNDEYVMSGSD-CGHLFI  178 (316)
Q Consensus       152 ----------------------------------------------------~~i~~~~~~~~~~~~l~~~~~-dg~v~~  178 (316)
                                                                          ..+.+++| +  ++++++++. ++.|++
T Consensus       395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~d~~i~~  471 (615)
T 1pgu_A          395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL-S--QNYVAVGLEEGNTIQV  471 (615)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE-C--SSEEEEEETTTSCEEE
T ss_pred             EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE-c--CCEEEEeecCCCeEEE
Confidence                                                                11333333 2  556666766 777777


Q ss_pred             EeccCCeeE-EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-CcccceeeeecCC---------
Q 021160          179 WKKKGGKLV-RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGR---------  246 (316)
Q Consensus       179 wd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~---------  246 (316)
                      ||+.+++.. ..+..|...|.+++|+|++++|++++.|+.|++||+.+++ +..+.+ |...+..+. +++         
T Consensus       472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~-~sp~~~~~~~~~  550 (615)
T 1pgu_A          472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS-WKPAEKGANEEE  550 (615)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE-ECCCC------C
T ss_pred             EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEE-EcCccccccccc
Confidence            777766554 5566788999999999999999999999999999998877 566666 877776666 777         


Q ss_pred             -CCceeEEecCCCeEEEEEecccCcc----------ee-EEeecccccccccCCCCeEEEEeccC
Q 021160          247 -EDHSRITLTPDVIMHVLRLQRRQTL----------AY-RERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       247 -~~~~~~s~~~d~~~~~w~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                       ++.++++++.|+.|++|++.+....          +. ..+.|++. +.+...+|.|.+|++..
T Consensus       551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          551 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             cCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence             8999999999999999999875211          11 26888888 99999999999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=6.7e-29  Score=201.55  Aligned_cols=211  Identities=14%  Similarity=0.061  Sum_probs=147.3

Q ss_pred             CccceEEEEECCC----CCcEEEEEecCCcEEEEeCcCCcccCCC--CCCCCceeccc------ccccCCCcccEEEEEE
Q 021160           33 NSIRLNAIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPI--SSDTPVDTFCP------RHLIGKNNIHITGLAY  100 (316)
Q Consensus        33 h~~~v~~~~~~~~----~~~~l~~g~~dg~v~~wd~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~i~~~~~  100 (316)
                      |...|++++|+|+    + +++++++.+  +++|++.++++....  .....++.+..      ......|...+..++|
T Consensus       110 ~~~~v~sla~spd~~~~~-~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEK-QVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CC-EEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccc-cEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe
Confidence            4567899999999    7 777777642  555555554433221  01222221111      0111356677778888


Q ss_pred             cc---CCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC-CceeeeEEEecCCCcEE--------
Q 021160          101 SN---TSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYV--------  167 (316)
Q Consensus       101 ~~---~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l--------  167 (316)
                      ++   ++.+|++ +.|++|+|||+.++                +.++.+.+|.. ...+.+++| +|++.++        
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TG----------------k~l~tL~g~~~~v~~v~~vaf-SpdG~~lvs~s~~~~  249 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTG----------------QLLKKMHIDDSYQASVCHKAY-SEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTC----------------CEEEEEECCC---CCCEEEEE-EETTEEEEEEC----
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCC----------------cEEEEEcCCCcceeeeEEEEE-CCCCCEEEEeccCCC
Confidence            88   5578888 47999999999998                78888876542 123777888 8999886        


Q ss_pred             ----EEeccCCeEEEEeccCCeeEEEe-----ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160          168 ----MSGSDCGHLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  237 (316)
Q Consensus       168 ----~~~~~dg~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  237 (316)
                          ++|+.|+++++||..+++.+..+     .+|...+.+..++  +..+|+++.|++|+|||+.+++ +.++.+|...
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~  327 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ  327 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence                56788999999999999988765     3666555544444  7889999999999999999998 7778888887


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      +.....|++++.++++++.|++|++||+
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            7765569999999999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=6.4e-29  Score=207.50  Aligned_cols=232  Identities=8%  Similarity=-0.048  Sum_probs=187.1

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  110 (316)
                      +|...|++++|+|++ .+|++++.|+.|++|++.+++..           ...... ..|...|.+++|+|+++ +|+++
T Consensus         9 ~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~-----------~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A            9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKN-----------VDLLQS-LRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTE-----------EEEEEE-EECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCcc-----------ccceee-eecCCceEEEEECCCCCcEEEEE
Confidence            589999999999998 89999999999999999876410           011222 47889999999999999 88875


Q ss_pred             -cCCcEEEEEc-CCCCCCCCccCCccccccCCCcceeeC--CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC---
Q 021160          111 -NDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---  183 (316)
Q Consensus       111 -~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---  183 (316)
                       .|+.|++||+ ..+                 ....+.+  |...  |.+++| +| +.++++++.|+.|++||+++   
T Consensus        76 ~~dg~i~~wd~~~~~-----------------~~~~~~~~~~~~~--v~~l~~-~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           76 TVQGEILKVDLIGSP-----------------SFQALTNNEANLG--ICRICK-YG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             ETTSCEEEECSSSSS-----------------SEEECBSCCCCSC--EEEEEE-ET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             cCCCeEEEEEeccCC-----------------ceEeccccCCCCc--eEEEEe-CC-CCEEEEEcCCCeEEEEccccccc
Confidence             7999999999 775                 3466777  7766  999999 78 99999999999999999987   


Q ss_pred             ------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC-CCCC---CCCCCcccceeeeecCC-CCceeE
Q 021160          184 ------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDFP---PLPDNAEKIMKANKQGR-EDHSRI  252 (316)
Q Consensus       184 ------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~~-~~~~~~  252 (316)
                            ++++..+. |...|.+++|+|++  +++++.|+.|++||++. ....   ....+...+..+. +.+ ++.+++
T Consensus       135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~-~~~~~~~~l~  210 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLPKEQEGYA  210 (342)
T ss_dssp             BCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECSGGGCEEE
T ss_pred             ccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE-ECCCCCCEEE
Confidence                  66666666 88899999999987  89999999999999988 4421   2233555555555 777 889999


Q ss_pred             EecCCCeEEEEEeccc------Cc------------------ceeE-EeecccccccccCCCCeEEEEeccCCC
Q 021160          253 TLTPDVIMHVLRLQRR------QT------------------LAYR-ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       253 s~~~d~~~~~w~~~~~------~~------------------~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +++.|+.+++|++...      ..                  .+.. .+.|++..+.++..+|.|++|+...+.
T Consensus       211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            9999999999998765      11                  1222 677788888888899999999987664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=206.94  Aligned_cols=235  Identities=10%  Similarity=0.058  Sum_probs=168.7

Q ss_pred             ceeeEEEEeeCCC-cc-eEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDS-AT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~-~~-~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||+.+.. .. ..+.           +|...|++++|+|++ .+|++++.||.|++||+++++.          
T Consensus        63 dg~i~iw~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~----------  120 (368)
T 3mmy_A           63 ANDVRCWEVQDSGQTIPKAQQ-----------MHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQA----------  120 (368)
T ss_dssp             TSEEEEEEECTTSCEEEEEEE-----------ECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----------
T ss_pred             CCcEEEEEcCCCCceeEEEec-----------cccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCc----------
Confidence            6899999998733 22 2222           378899999999998 8999999999999999998762          


Q ss_pred             eecccccccCCCcccEEEEEE--ccCCCeEEE-ecCCcEEEEEcCCCCCCCCcc-----------------------CCc
Q 021160           80 DTFCPRHLIGKNNIHITGLAY--SNTSELLIS-YNDELVYLFEKNMGLGPSPLS-----------------------LSP  133 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~-----------------------~~~  133 (316)
                          .. . ..|...|.+++|  +|++.+|++ +.|+.|++||++++.......                       +..
T Consensus       121 ----~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  194 (368)
T 3mmy_A          121 ----IQ-I-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV  194 (368)
T ss_dssp             ----EE-E-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred             ----ee-e-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence                11 1 468899999999  888887777 479999999998763110000                       000


Q ss_pred             cccccCCCcceeeCCcCCceeeeEEEecCCCcE----EEEeccCCeEEEEeccCC---eeEEEeecCcc-----------
Q 021160          134 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY----VMSGSDCGHLFIWKKKGG---KLVRLMVGDRH-----------  195 (316)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----l~~~~~dg~v~~wd~~~~---~~~~~~~~~~~-----------  195 (316)
                      +++.................+.++++ .++...    +++++.||.|++|++...   +.+..+..|..           
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (368)
T 3mmy_A          195 YQLENQPSEFRRIESPLKHQHRCVAI-FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI  273 (368)
T ss_dssp             EECSSSCEEEEECCCSCSSCEEEEEE-EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred             EEeccccchhhhccccccCCCceEEE-cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence            00110000000000000011444444 333333    999999999999999887   55777777776           


Q ss_pred             -ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          196 -VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       196 -~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                       .|.+++|+|++++|++++.||.|++||+.+++ +..+..|...+..+. +++++.++++++.|+..+.|++.
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC-FNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE-ECTTSSCEEEEECCCSTTCGGGC
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE-ECCCCCeEEEEeccccccccccc
Confidence             79999999999999999999999999999876 667777888876666 88999999999998755555443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.7e-28  Score=212.00  Aligned_cols=215  Identities=11%  Similarity=0.243  Sum_probs=174.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+.           +|...|.+++|++   .++++|+.||.|++||+.+++..           
T Consensus       192 dg~i~vwd~~~~~~~~~~~-----------~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~-----------  246 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNTLI-----------HHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI-----------  246 (435)
T ss_dssp             TSCEEEEESSSCCEEEEEC-----------CCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC-----------
T ss_pred             CCeEEEEECCCCcEEEEEc-----------CCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc-----------
Confidence            6899999998876644432           3788999999974   58999999999999999877521           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .......+|...|.+++|  +++++++ +.|+.|++||++++                +.+..+.+|...  +.++++ 
T Consensus       247 -~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-  304 (435)
T 1p22_A          247 -TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC----------------EFVRTLNGHKRG--IACLQY-  304 (435)
T ss_dssp             -EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC----------------cEEEEEcCCCCc--EEEEEe-
Confidence             111333788999999999  6677777 57999999999988                678888888866  999988 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----------CCC
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPP  230 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----------~~~  230 (316)
                        ++.++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|+.||.|++||+....          +..
T Consensus       305 --~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  380 (435)
T 1p22_A          305 --RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT  380 (435)
T ss_dssp             --ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheee
Confidence              3689999999999999999999999999999999999999  67899999999999999986543          334


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +.+|...+..+.+   ++..+++++.|+.|++|++.+...
T Consensus       381 ~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          381 LVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             ECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC------
T ss_pred             ccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEECCCCCC
Confidence            5677777766664   678999999999999999987644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.7e-28  Score=197.99  Aligned_cols=230  Identities=17%  Similarity=0.194  Sum_probs=183.6

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .+|.+.|++++| |++ .+|++|+.||.|++||+.+++              ....+ ..|...|.+++|+|++++++++
T Consensus        15 ~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~--------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~   77 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQW--------------LGTVV-YTGQGFLNSVCYDSEKELLLFG   77 (313)
T ss_dssp             CCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSE--------------EEEEE-EECSSCEEEEEEETTTTEEEEE
T ss_pred             hCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCE--------------EEEEe-ecCCccEEEEEECCCCCEEEEe
Confidence            368999999999 888 899999999999999998765              22222 5678999999999999988874


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .|+.|++|++....             ..+....+.+|...  +.+++|   ++.++++++.|+.|++||  .++.+..
T Consensus        78 ~~dg~i~~~~~~~~~-------------~~~~~~~~~~~~~~--i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~  137 (313)
T 3odt_A           78 GKDTMINGVPLFATS-------------GEDPLYTLIGHQGN--VCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYN  137 (313)
T ss_dssp             ETTSCEEEEETTCCT-------------TSCC-CEECCCSSC--EEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred             cCCCeEEEEEeeecC-------------CCCcccchhhcccC--EEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence             79999999987641             11456677788866  999998   477999999999999999  6888888


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCCCCCCCC-CcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          190 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +..|...+.+++|+| +++.+++++.|+.|++||.... ...+.. +...+..+. +++++. +++++.|+.+++|++.+
T Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~-~~~~~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLA-VVDDGH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEE-EEETTE-EEEEETTSEEEEEETTT
T ss_pred             cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEE-EcCCCe-EEEccCCCeEEEEECCc
Confidence            999999999999988 8899999999999999994332 333333 555555554 677766 99999999999999986


Q ss_pred             cCccee----------EEeecccccccccCCCCeEEEEeccCCC
Q 021160          268 RQTLAY----------RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       268 ~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ++....          ..+.|++ .+.+...+|.|.+|++..+.
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence            543321          1466666 57788889999999987764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.3e-28  Score=205.55  Aligned_cols=242  Identities=9%  Similarity=0.048  Sum_probs=166.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-E-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-S-  109 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s-  109 (316)
                      +|...|++++|+|++ .+|++|+.++ +++|++.+.+.              ...   .+...+..+++.++++.++ + 
T Consensus        17 ~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAH--------------IMS---QEMRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             --CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEE--------------EEE---EECSCCCEEEECTTSSEEEEEC
T ss_pred             cCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcce--------------eee---eecCCeEEEEEcCCCCEEEEEE
Confidence            478999999999999 8999888765 78999886652              111   1112467788888887553 3 


Q ss_pred             ecCCcEEEEEcCCCCCCC----------------------CccCCccccccC-CCcceeeCCcCCceeeeEEEecCCCcE
Q 021160          110 YNDELVYLFEKNMGLGPS----------------------PLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEY  166 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~----------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~  166 (316)
                      +.|++|++||+.++....                      ...+.++++.+. +.+..+..   .  ...+++ ++  .+
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~--~~~~~~-s~--~~  149 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---F--GGVCEF-SN--GL  149 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---E--EEEEEE-ET--TE
T ss_pred             CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---C--CceEEE-Ec--cE
Confidence            468899999998762100                      000011111111 11111111   0  122233 33  44


Q ss_pred             EEE--eccCCeEEEEeccCCe----------------eEEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEecCCCCC
Q 021160          167 VMS--GSDCGHLFIWKKKGGK----------------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD  227 (316)
Q Consensus       167 l~~--~~~dg~v~~wd~~~~~----------------~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~-i~iwd~~~~~  227 (316)
                      +++  |+.+|.|++||+.+++                .+..+.+|...|.+++|+|++++|++++.|++ |++||+++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            554  6889999999998765                26788899999999999999999999999998 9999999887


Q ss_pred             -CCCCC-C-CcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc---------------------------------
Q 021160          228 -FPPLP-D-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------------------------------  271 (316)
Q Consensus       228 -~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~---------------------------------  271 (316)
                       +..+. + |...+..++ +++++.++++++.|+.+++|++......                                 
T Consensus       230 ~~~~~~~g~h~~~v~~~~-~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (355)
T 3vu4_A          230 LVREFRRGLDRADVVDMK-WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRG  308 (355)
T ss_dssp             EEEEEECTTCCSCEEEEE-ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCC
T ss_pred             EEEEEEcCCCCCcEEEEE-ECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCc
Confidence             55665 4 777776666 8899999999999999999999754211                                 


Q ss_pred             eeEEeecccccccccCCCCeEEEEeccCCC
Q 021160          272 AYRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ....+.+++..+.....+|++++|++..++
T Consensus       309 ~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          309 CKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             eEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            112466666677777778888888876544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.7e-27  Score=204.84  Aligned_cols=223  Identities=16%  Similarity=0.251  Sum_probs=180.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+.           +|...+.++++++   .++++|+.|+.+++||.....             
T Consensus       168 Dg~v~iWd~~~~~~~~~~~-----------~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~-------------  220 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMT-----------SHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAE-------------  220 (420)
T ss_dssp             TSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS-------------
T ss_pred             CCeEEEEEcCCCcEEEEEe-----------CCCCceEEEeeCC---CEEEEEeCCCceeEeeecccc-------------
Confidence            6899999998876544332           4788999998864   689999999999999998654             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .......+|...+..+.|+|+++++++ +.|+.+++|+...+..            ....+.....|...  |.+++| 
T Consensus       221 -~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~------------~~~~~~~~~~~~~~--V~~~~~-  284 (420)
T 4gga_A          221 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------------GWVPLQTFTQHQGA--VKAVAW-  284 (420)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS------------CSCCSEEECCCSSC--EEEEEE-
T ss_pred             -eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc------------cceeeeeecccCCc--eeeeee-
Confidence             222223788999999999999998888 4799999999987621            01234556677765  999999 


Q ss_pred             cCC-CcEEEE--eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEecCCCCC-CCCCCCC
Q 021160          161 GPN-DEYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       161 ~~~-~~~l~~--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                      +|. ..++++  |+.|+.|++||+.+++++..+..| ..+.++.|+|+++.+++++  .|+.|+|||+.+++ +..+.+|
T Consensus       285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             CTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             CCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence            564 455554  467999999999999999888765 5788999999999987765  79999999999887 7788899


Q ss_pred             cccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ...|..++ +++++.++++++.|++|++|++.+..
T Consensus       364 ~~~V~~l~-~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          364 TSRVLSLT-MSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             SSCEEEEE-ECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             CCCEEEEE-EcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99987777 88999999999999999999987653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=222.66  Aligned_cols=261  Identities=11%  Similarity=0.098  Sum_probs=181.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+++.+....+.            |...|++++|+|++ +++++|+.||.|++||++++++...     .+..
T Consensus        78 D~~v~lWd~~~~~~~~~~~------------~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~-----~i~~  139 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLTTVF------------VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSF-----KLDN  139 (902)
T ss_dssp             TCEEEEEETTTCSEEEEEE------------CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEE-----EECC
T ss_pred             cCeEEEEECCCCcEEEEEc------------CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccc-----eecc
Confidence            6889999998876544442            45689999999999 8999999999999999998763100     0000


Q ss_pred             cccc-cccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC----------
Q 021160           82 FCPR-HLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----------  148 (316)
Q Consensus        82 ~~~~-~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  148 (316)
                      +... ....+|...|.+++|+|++ ..+++ +.|+.| +||++++                +..+.+..|          
T Consensus       140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~----------------~~~~~~~~~~~~g~~~~~~  202 (902)
T 2oaj_A          140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN----------------EIKQSFIYELPPFAPGGDF  202 (902)
T ss_dssp             HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT----------------EEEEEECCCBCTTCCCSTT
T ss_pred             ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC----------------ceEEEEecccCCcCCCccc
Confidence            0000 1236789999999999975 45666 479999 9999887                444445443          


Q ss_pred             --------cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE--ee---c-------------CccceEEEEE
Q 021160          149 --------RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL--MV---G-------------DRHVVNQLEP  202 (316)
Q Consensus       149 --------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~--~~---~-------------~~~~v~~~~~  202 (316)
                              ...  |.+++| +|++.+|++|+.||.|++||+++++++..  +.   .             |...|.+++|
T Consensus       203 ~~~~~~~h~~~--V~~v~f-spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w  279 (902)
T 2oaj_A          203 SEKTNEKRTPK--VIQSLY-HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW  279 (902)
T ss_dssp             CCCTTSCBCCC--EEEEEE-CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred             ccccccccCCC--eEEEEE-cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence                    333  999999 99999999999999999999999887653  21   1             3447889999


Q ss_pred             c----CCC-CeEEEEeCC--------------------------------------------------------------
Q 021160          203 H----PHI-PMFATCGIE--------------------------------------------------------------  215 (316)
Q Consensus       203 ~----p~~-~~l~s~~~d--------------------------------------------------------------  215 (316)
                      +    |++ .++++|+.|                                                              
T Consensus       280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~  359 (902)
T 2oaj_A          280 MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFA  359 (902)
T ss_dssp             EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred             EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcC
Confidence            5    433 335555433                                                              


Q ss_pred             --------------CcEEEecCCCCC-CCC-------CCCCccccee---------------------------------
Q 021160          216 --------------KTVKLWAPMPTD-FPP-------LPDNAEKIMK---------------------------------  240 (316)
Q Consensus       216 --------------~~i~iwd~~~~~-~~~-------~~~~~~~~~~---------------------------------  240 (316)
                                    +.|++|++.++. ...       +..|...+..                                 
T Consensus       360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~  439 (902)
T 2oaj_A          360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR  439 (902)
T ss_dssp             HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred             CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence                          334444443321 000       1111111111                                 


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecccCc--------------------ceeE-EeecccccccccCCCCeEEEEeccC
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRRQT--------------------LAYR-ERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      ...++++++++++++.|++|++||+..+..                    .+.. .++|++..++++..+|+|.+|++..
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~  519 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV  519 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence            112456788999999999999999876532                    1222 7899999999999999999999987


Q ss_pred             C
Q 021160          300 S  300 (316)
Q Consensus       300 ~  300 (316)
                      +
T Consensus       520 ~  520 (902)
T 2oaj_A          520 N  520 (902)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.5e-28  Score=209.21  Aligned_cols=243  Identities=9%  Similarity=0.039  Sum_probs=181.3

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCc---ccCCCCCCCC--------------------------------
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH---WYSPISSDTP--------------------------------   78 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~---~~~~~~~~~~--------------------------------   78 (316)
                      ..++.+++|+|+| ++|+++ .++.|++||+.+++   ..........                                
T Consensus         4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            3478999999999 655555 57899999999887   3322111000                                


Q ss_pred             --c-----eecccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEEEEEcC--CCCCCCCccCCccccccCCCcceeeC
Q 021160           79 --V-----DTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKN--MGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        79 --~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                        +     ...........|...|.+++|+|++++| +++ .|+.|++||+.  ++                .....+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------~~~~~~~~  145 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------NVLKLRKR  145 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------SCEEEEEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------ceeeeeec
Confidence              0     0000000112456689999999999975 665 69999999998  66                56666663


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE----EeecCccceEEEEEcCC---CCeEEEEeCCCcEEE
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----LMVGDRHVVNQLEPHPH---IPMFATCGIEKTVKL  220 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~----~~~~~~~~v~~~~~~p~---~~~l~s~~~d~~i~i  220 (316)
                      +.....+.+++| +|++.+|++++.+|.+++|++.+++...    .+.+|...|.+++|+|+   +++|++++.|+.|++
T Consensus       146 ~~~~~~v~~~~~-sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v  224 (450)
T 2vdu_B          146 FCFSKRPNAISI-AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI  224 (450)
T ss_dssp             EECSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred             ccCCCCceEEEE-cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence            332234999999 9999999999999999999998877544    77789999999999999   999999999999999


Q ss_pred             ecCCCCC-CCC-CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE------------------------
Q 021160          221 WAPMPTD-FPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR------------------------  274 (316)
Q Consensus       221 wd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~------------------------  274 (316)
                      ||++.+. +.. +.+|...+..+. ++ ++.++++++.|+.|++||+.+++.....                        
T Consensus       225 wd~~~~~~~~~~~~~h~~~v~~~~-~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (450)
T 2vdu_B          225 SHYPQCFIVDKWLFGHKHFVSSIC-CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNEN  302 (450)
T ss_dssp             EEESCTTCEEEECCCCSSCEEEEE-EC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--------
T ss_pred             EECCCCceeeeeecCCCCceEEEE-EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccc
Confidence            9998876 333 557888887776 56 9999999999999999999876533222                        


Q ss_pred             -----------EeecccccccccC-CCCeEEEEec
Q 021160          275 -----------ERRYNAADFESDE-EEGETYLLGF  297 (316)
Q Consensus       275 -----------~~~~~~~~~~~~~-~~~~v~~~~~  297 (316)
                                 .+.|+...+.... .++.|++|++
T Consensus       303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                       2334455565554 7888999999

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-29  Score=216.10  Aligned_cols=220  Identities=9%  Similarity=-0.001  Sum_probs=164.9

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcc-----cEEEEEEccCCCe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-----HITGLAYSNTSEL  106 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~  106 (316)
                      +|...|.+++|+|+| .+||+++.||.|++||...                +...+ . |..     .+.+++|+|+|++
T Consensus        83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----------------~l~~l-~-~~~~~~~~sv~svafSPDG~~  143 (588)
T 2j04_A           83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----------------MLTNL-D-SKGNLSSRTYHCFEWNPIESS  143 (588)
T ss_dssp             SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----------------EEEEC-C-CSSCSTTTCEEEEEECSSSSC
T ss_pred             CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----------------eeeec-c-CCCccccccEEEEEEcCCCCE
Confidence            467789999999999 8999999999999999542                11112 3 333     5999999999998


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee----eCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEec
Q 021160          107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  181 (316)
Q Consensus       107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~  181 (316)
                      |+++ .||+|++||+..+.-..         ++.-.+..+    .+|...  |.+++| +|+|  +++++.|+.|++|++
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~---------~~~i~l~ti~~~~~gh~~~--V~sVaw-SPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENT---------PEFYFESSIRLSDAGSKDW--VTHIVW-YEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTC---------CCCEEEEEEECSCTTCCCC--EEEEEE-ETTE--EEEEETTCCEEEECC
T ss_pred             EEEEcCCCEEEEEECCCCcccc---------ccceeeeeeeccccccccc--EEEEEE-cCCc--EEEEeCCCeEEEEEC
Confidence            8885 79999999998761000         000013555    556655  999999 8998  788888999999999


Q ss_pred             cCCee---EEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC-CCCCCCcccceeeeec--CCCCceeEEe
Q 021160          182 KGGKL---VRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ--GREDHSRITL  254 (316)
Q Consensus       182 ~~~~~---~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~s~  254 (316)
                      ..++.   ...+ .+|...|.+++|+  +..||+++ +++|++||+.+++. ....+|...+..+. +  ++++..++++
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va-~~~s~d~~~La~a  285 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIP-LNHEKESTILLMS  285 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEE-ETTCSSCEEEEEC
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEE-eeeCCCCCEEEEE
Confidence            87773   3566 4788899999999  68899887 79999999998875 33337888887766 6  7788889999


Q ss_pred             cCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEec
Q 021160          255 TPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       255 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      ..+|. ++|.+..      ..++|+...+++.  ++++++|+.
T Consensus       286 ~edG~-klw~~d~------~~~spd~~l~a~~--d~~v~lW~~  319 (588)
T 2j04_A          286 NKTSY-KVLLEDE------LHVTADNIIAPYL--EKKFKKWST  319 (588)
T ss_dssp             SSCEE-EEEESSS------EEEECCCSSHHHH--HHHHHHTTT
T ss_pred             cCCCC-EEEeecc------EEECCCceEEEEc--CCEEEEEEC
Confidence            99999 9999761      1255555555543  444555544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=205.97  Aligned_cols=227  Identities=10%  Similarity=0.060  Sum_probs=165.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc-----------eecc------cccccCCCcccEE
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV-----------DTFC------PRHLIGKNNIHIT   96 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~-----------~~~~------~~~~~~~~~~~i~   96 (316)
                      ...|.+++|+|+| +++|+++.|++|+  |...++....  ++..+           ..+.      ...+...|...|.
T Consensus        15 ~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~l~g--h~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~   89 (588)
T 2j04_A           15 EDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKDINC--NSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR   89 (588)
T ss_dssp             SSSSCCEEECTTS-CEEEECSSSEEEE--EECCCSCCSS--BGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred             hccEEEEEECCCC-CEEEEEcCCceee--cccccceecC--CCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence            5689999999999 8999999999998  6555543210  00000           0000      0111124578899


Q ss_pred             EEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC---CceeeeEEEecCCCcEEEEecc
Q 021160           97 GLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMSGSD  172 (316)
Q Consensus        97 ~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~  172 (316)
                      +++|+|+|..|++ +.||.|++||.+.                  .+..+. |..   ...+.+++| +|+|++|++|+.
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~------------------~l~~l~-~~~~~~~~sv~svaf-SPDG~~LAsgs~  149 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK------------------MLTNLD-SKGNLSSRTYHCFEW-NPIESSIVVGNE  149 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE------------------EEEECC-CSSCSTTTCEEEEEE-CSSSSCEEEEET
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc------------------eeeecc-CCCccccccEEEEEE-cCCCCEEEEEcC
Confidence            9999999998888 5899999999532                  333344 332   123999999 999999999999


Q ss_pred             CCeEEEEeccCCee-------EEEe----ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC----C-CCCcc
Q 021160          173 CGHLFIWKKKGGKL-------VRLM----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----L-PDNAE  236 (316)
Q Consensus       173 dg~v~~wd~~~~~~-------~~~~----~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~----~-~~~~~  236 (316)
                      ||+|++||+.+++.       +..+    .+|...|.+++|+|++  +++++.|++|++|++.++...+    + .+|..
T Consensus       150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~  227 (588)
T 2j04_A          150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR  227 (588)
T ss_dssp             TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred             CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence            99999999998753       5666    5677899999999999  8888899999999998877543    5 35667


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE----------Ee--ecccccccccCCCCe
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------ER--RYNAADFESDEEEGE  291 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~  291 (316)
                      .+..+++ +  +..+++++ ++.|++|++..++...+.          .+  +|++..++...++|.
T Consensus       228 ~V~svaF-s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          228 KITDLKI-V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             CCCCEEE-E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             cEEEEEE-E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            7777774 4  46788776 699999998876553332          33  555555555555555

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-28  Score=228.11  Aligned_cols=198  Identities=10%  Similarity=0.095  Sum_probs=162.6

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      ||...|++++|+|++ .+||+|+.||.|++|+....+.              ...  ..|...|.+++|+| +++|++ +
T Consensus        15 gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~--------------~~~--~~~~~~V~~l~fsp-g~~L~S~s   76 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEV--------------VIK--LEDRSAIKEMRFVK-GIYLVVIN   76 (902)
T ss_dssp             ECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEE--------------EEE--CSSCCCEEEEEEET-TTEEEEEE
T ss_pred             CCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEE--------------EEE--cCCCCCEEEEEEcC-CCEEEEEE
Confidence            588999999999999 8999999999999999876641              111  34678999999999 887777 5


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE---
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---  187 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~---  187 (316)
                      .|++|++||+.++                +.+..+. +...  |++++| +|+++++++|+.||.|++||++++++.   
T Consensus        77 ~D~~v~lWd~~~~----------------~~~~~~~-~~~~--V~~v~~-sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~  136 (902)
T 2oaj_A           77 AKDTVYVLSLYSQ----------------KVLTTVF-VPGK--ITSIDT-DASLDWMLIGLQNGSMIVYDIDRDQLSSFK  136 (902)
T ss_dssp             TTCEEEEEETTTC----------------SEEEEEE-CSSC--EEEEEC-CTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CcCeEEEEECCCC----------------cEEEEEc-CCCC--EEEEEE-CCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence            7999999999887                5666665 4444  999999 999999999999999999999988764   


Q ss_pred             --------EEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC-CCCCCC------------------Ccccce
Q 021160          188 --------RLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-FPPLPD------------------NAEKIM  239 (316)
Q Consensus       188 --------~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~-~~~~~~------------------~~~~~~  239 (316)
                              ..+.+|.+.|.+++|+|++ ..+++++.|+.| +||++.++ ...+..                  |...+.
T Consensus       137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred             eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence                    2235688999999999964 679999999999 99998875 322322                  234555


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .+. |++++.++++++.|+.|++||+.+++
T Consensus       216 ~v~-fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          216 QSL-YHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEE-ECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEE-EcCCCCEEEEEECCCeEEEEECCCCc
Confidence            555 88999999999999999999997654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=200.77  Aligned_cols=207  Identities=13%  Similarity=0.153  Sum_probs=161.2

Q ss_pred             CCCccceEEEEECCCC--CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           31 PMNSIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~--~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      .+|...|++++|+|++  +.+|++|+.||.|++||+.+...             .......+|...|.+++|+|++++|+
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------TIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------EEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------eeEEEeccccCCEEEEEECcCCCEEE
Confidence            4799999999999983  38999999999999999987320             22223367899999999999999888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe-cCCCcEEEEeccCCeEEEEeccCCee
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      ++ .|+.|++||+.++                ... .+..|...  |.+++|. ++++.+|++++.||.|++||+++++.
T Consensus       103 s~~~dg~v~iwd~~~~----------------~~~-~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSN----------------QAI-QIAQHDAP--VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EEETTSEEEEEETTTT----------------EEE-EEEECSSC--EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             EEcCCCcEEEEEcCCC----------------Cce-eeccccCc--eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            85 7999999999887                333 35667765  9999973 67889999999999999999998877


Q ss_pred             EEEeecCc-----------------------------------------cceEEEEEcCCCCe----EEEEeCCCcEEEe
Q 021160          187 VRLMVGDR-----------------------------------------HVVNQLEPHPHIPM----FATCGIEKTVKLW  221 (316)
Q Consensus       187 ~~~~~~~~-----------------------------------------~~v~~~~~~p~~~~----l~s~~~d~~i~iw  221 (316)
                      +..+..+.                                         ..+.++++.++...    +++++.|+.|++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          164 MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            66665432                                         22344444444433    9999999999999


Q ss_pred             cCCCCC----CCCCCCCcc------------cceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          222 APMPTD----FPPLPDNAE------------KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       222 d~~~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +++...    ...+..|..            .+..+. +++++.++++++.|+.|++||+.+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIA-FHPVHGTLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             ecCCCCccccceeeeeeecccccccccccccceEEEE-EecCCCEEEEEccCCeEEEEECCCCcE
Confidence            998763    444445554            454554 888999999999999999999987643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=3.8e-28  Score=206.97  Aligned_cols=228  Identities=9%  Similarity=0.044  Sum_probs=155.7

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc--------CCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--------TSE  105 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~  105 (316)
                      ...+....+.+++ .++++|+.|++|+|||+++++..          .........+|...|.+++|+|        +++
T Consensus        89 ~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~----------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~  157 (393)
T 4gq1_A           89 DGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETII----------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ  157 (393)
T ss_dssp             --------CCEEE-EEEEEEETTSCEEEEEEETTEEE----------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE
T ss_pred             CCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccc----------eeeeecccCCCCCceEEEEEccccccccCCCCC
Confidence            3333334444444 78999999999999999987521          1112233489999999999998        778


Q ss_pred             eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccC
Q 021160          106 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       106 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~  183 (316)
                      +|+++ .|++|+|||+.++                .....+.+|...  +.+++| +|++ .+|++++.|+.|++||+.+
T Consensus       158 ~las~s~D~tv~~Wd~~~~----------------~~~~~~~~~~~~--v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          158 VIASVGDDCTLIIWRLTDE----------------GPILAGYPLSSP--GISVQF-RPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEETTSEEEEEEEETT----------------EEEEEEEECSSC--EEEEEE-ETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EEEEEECCCeEEEEECCCC----------------ceeeeecCCCCC--cEEEEE-CCCCCceEEecCCCCEEEEEECCC
Confidence            99985 7999999999876                466667777766  999999 7876 5899999999999999987


Q ss_pred             CeeEEE-------------------------eecCccceEEEEEc-CCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          184 GKLVRL-------------------------MVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       184 ~~~~~~-------------------------~~~~~~~v~~~~~~-p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      ++....                         ..+|...+.+++|+ |+++.|++++.|+.+++||+.... ...+..+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~  298 (393)
T 4gq1_A          219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM  298 (393)
T ss_dssp             CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred             CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence            764332                         23566788899986 799999999999999999998665 333332222


Q ss_pred             cc------------------eeeeecCC-CCceeEEecCCCeEEEEEecccCcce---------eE-EeecccccccccC
Q 021160          237 KI------------------MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLA---------YR-ERRYNAADFESDE  287 (316)
Q Consensus       237 ~~------------------~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~~---------~~-~~~~~~~~~~~~~  287 (316)
                      .+                  ....++++ ++.++++++.|+.|++||+.+++...         .. .+.|++..++...
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            11                  11222223 45567889999999999998764332         22 6888888888877


Q ss_pred             CCCe
Q 021160          288 EEGE  291 (316)
Q Consensus       288 ~~~~  291 (316)
                      ++|.
T Consensus       379 ~~Gv  382 (393)
T 4gq1_A          379 EGSV  382 (393)
T ss_dssp             SSEE
T ss_pred             CCCe
Confidence            6664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.1e-26  Score=197.72  Aligned_cols=250  Identities=7%  Similarity=0.010  Sum_probs=188.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+..            ...+.+++|+|++..++++++.|+.|++||+.+++.            
T Consensus        11 d~~v~v~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------------   66 (391)
T 1l0q_A           11 SDNISVIDVTSNKVTATIPV------------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------------   66 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------------
T ss_pred             CCEEEEEECCCCeEEEEeec------------CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------------
Confidence            58999999988765544432            235899999999943457778999999999998873            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ...+ .. ...+.+++|+|++++++ ++ .++.|++||+.++                +....+..+. .  +.+++|
T Consensus        67 --~~~~-~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~----------------~~~~~~~~~~-~--~~~~~~  123 (391)
T 1l0q_A           67 --IATV-PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----------------TVAGTVKTGK-S--PLGLAL  123 (391)
T ss_dssp             --EEEE-EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECSS-S--EEEEEE
T ss_pred             --EEEE-EC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC----------------eEEEEEeCCC-C--cceEEE
Confidence              2222 22 23899999999999664 45 5799999999887                5556665443 3  899999


Q ss_pred             ecCCCcEE-EEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCCCCCCccc
Q 021160          160 FGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEK  237 (316)
Q Consensus       160 ~~~~~~~l-~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~  237 (316)
                       +|+++++ ++++.++.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.|+.|++||+++++......+...
T Consensus       124 -s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  201 (391)
T 1l0q_A          124 -SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA  201 (391)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE
T ss_pred             -CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCC
Confidence             9999977 788889999999999999988887664 56899999999886 6778899999999988763322223444


Q ss_pred             ceeeeecCCCCceeEEec---CCCeEEEEEecccCcce---------eEEeecccccc-cccCCCCeEEEEeccCCC
Q 021160          238 IMKANKQGREDHSRITLT---PDVIMHVLRLQRRQTLA---------YRERRYNAADF-ESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~---~d~~~~~w~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  301 (316)
                      +..+. +++++.++++++   .++.+++||+.+++...         ...+.|++..+ .+...++++.+||...+.
T Consensus       202 ~~~~~-~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          202 PSGIA-VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEEE-ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccceE-ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            44444 778888777776   78999999987653221         12567777666 566778899999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-27  Score=198.41  Aligned_cols=196  Identities=8%  Similarity=0.016  Sum_probs=148.4

Q ss_pred             CCccceEEEEECC--CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           32 MNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        32 gh~~~v~~~~~~~--~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      +|..+|.+++|+|  ++ .++++|+.||.|++||+++++              +.......|...+.+++|+|++.+|++
T Consensus       123 ~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~--------------~~~~~~~~~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDS--------------QYIVHSAKSDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSC--------------EEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred             CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCc--------------EEEEEecCCCCceEEEEECCCCCEEEE
Confidence            3678999999999  88 899999999999999999876              222222345667999999999999998


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCCCc-ceeeC-CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      + .|+.|++||++++                +.. ..+.. |...  |.+++| +|++.+|+++++ +.|++||+++++.
T Consensus       188 g~~dg~i~iwd~~~~----------------~~~~~~~~~~h~~~--v~~l~f-s~~g~~l~s~~~-~~v~iwd~~~~~~  247 (343)
T 3lrv_A          188 YSPDGILDVYNLSSP----------------DQASSRFPVDEEAK--IKEVKF-ADNGYWMVVECD-QTVVCFDLRKDVG  247 (343)
T ss_dssp             ECTTSCEEEEESSCT----------------TSCCEECCCCTTSC--EEEEEE-CTTSSEEEEEES-SBEEEEETTSSTT
T ss_pred             EcCCCEEEEEECCCC----------------CCCccEEeccCCCC--EEEEEE-eCCCCEEEEEeC-CeEEEEEcCCCCc
Confidence            5 7999999999987                454 66777 7766  999999 999999999995 5999999998876


Q ss_pred             EEEeec---CccceE--EEEEcCCCCeEEEEeC-CCcEEEecCCCCCCCCCCCCcccceeeeecCC---CCceeEEecCC
Q 021160          187 VRLMVG---DRHVVN--QLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR---EDHSRITLTPD  257 (316)
Q Consensus       187 ~~~~~~---~~~~v~--~~~~~p~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d  257 (316)
                      +..+..   |...+.  +++|+|++++|++++. |+.|++|++...... ..  ..++ ....+.+   +...+++++.|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~~~l~~~~~d  323 (343)
T 3lrv_A          248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN-WT--KDEE-SALCLQSDTADFTDMDVVCGD  323 (343)
T ss_dssp             CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS-EE--EEEE-EECCC----CCCCEEEEEEET
T ss_pred             ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc-eE--ecCc-eeEecCccccccceeEEEecC
Confidence            555443   333343  6999999999999988 999999998654311 00  0222 2233554   67788899999


Q ss_pred             CeEEEEEec
Q 021160          258 VIMHVLRLQ  266 (316)
Q Consensus       258 ~~~~~w~~~  266 (316)
                      +.+.++-..
T Consensus       324 ~~~~~~~~~  332 (343)
T 3lrv_A          324 GGIAAILKT  332 (343)
T ss_dssp             TEEEEEEEC
T ss_pred             CceEEEEec
Confidence            998887533

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.2e-26  Score=191.69  Aligned_cols=232  Identities=15%  Similarity=0.123  Sum_probs=163.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .++|||+.+.+.  .....           ...+..+++.+.+..++++|+.|+.|++||+.+++...            
T Consensus        41 ~~~iw~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~------------   95 (355)
T 3vu4_A           41 SFEIYNVHPVAH--IMSQE-----------MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS------------   95 (355)
T ss_dssp             EEEEEEETTEEE--EEEEE-----------CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE------------
T ss_pred             EEEEEecCCcce--eeeee-----------cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE------------
Confidence            478999875433  22211           22477888888873444678889999999999887332            


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCC-C-----------------------CCCCccCCccccccC
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG-L-----------------------GPSPLSLSPEDLQKR  139 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~-----------------------~~~~~~~~~~~~~~~  139 (316)
                        .+  .+...|.+++++++.  ++.+.|+.|++||+.+. .                       +.....+.++++.+.
T Consensus        96 --~~--~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           96 --RI--KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             --EE--ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             --EE--ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence              11  134467777776542  33334566666666554 1                       122223333444332


Q ss_pred             C---------------C-cceeeCCcCCceeeeEEEecCCCcEEEEeccCCe-EEEEeccCCeeEEEee-c-CccceEEE
Q 021160          140 E---------------E-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMV-G-DRHVVNQL  200 (316)
Q Consensus       140 ~---------------~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~~wd~~~~~~~~~~~-~-~~~~v~~~  200 (316)
                      .               + ...+.+|...  |.+++| +|++.+|++|+.|++ |++||+++++++..+. + |...|.++
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~--v~~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~  246 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNP--IKMVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM  246 (355)
T ss_dssp             -----------------CCEEECCCSSC--EEEEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred             CccccccccccccccCcccEEEEccCCc--eEEEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence            2               2 6778899876  999999 999999999999998 9999999999999998 5 99999999


Q ss_pred             EEcCCCCeEEEEeCCCcEEEecCCCCCCC---CCCC--------------------CcccceeeeecCCCCceeEEecCC
Q 021160          201 EPHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPD--------------------NAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       201 ~~~p~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~--------------------~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      +|+|++++|++++.|++|++||++.....   .+..                    ..........|++++..+++++.|
T Consensus       247 ~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d  326 (355)
T 3vu4_A          247 KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT  326 (355)
T ss_dssp             EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred             EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence            99999999999999999999999765311   1111                    000001334488899999999999


Q ss_pred             CeEEEEEecccC
Q 021160          258 VIMHVLRLQRRQ  269 (316)
Q Consensus       258 ~~~~~w~~~~~~  269 (316)
                      |.+++|++..++
T Consensus       327 g~~~~~~~~~~~  338 (355)
T 3vu4_A          327 RMIETFKVVFDD  338 (355)
T ss_dssp             TEEEEEEEEEET
T ss_pred             CeEEEEEEEcCC
Confidence            999999987653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.9e-27  Score=193.05  Aligned_cols=175  Identities=7%  Similarity=-0.011  Sum_probs=131.4

Q ss_pred             ceeeEEEEeeC-CCcceEEEeccccccccCCCCccceEEEEECC---CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160            2 VLFNMLFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~   77 (316)
                      ++.|++|++.. .+....+..           |...++.++|+|   ++ .+|++|+.|++|+|||+++++         
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~-----------~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk---------  214 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFL-----------MPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ---------  214 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEE-----------CCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC---------
T ss_pred             CCcEEEEEECCCCceeeeecc-----------CCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc---------
Confidence            56788888854 333333332           677788888888   55 899999999999999999998         


Q ss_pred             CceecccccccCC--CcccEEEEEEccCCCeE------------EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCc
Q 021160           78 PVDTFCPRHLIGK--NNIHITGLAYSNTSELL------------ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP  142 (316)
Q Consensus        78 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l------------~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  142 (316)
                           +...+..+  +...+.+++|+|+|.++            +++ .|++|++||..++                +.+
T Consensus       215 -----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg----------------k~l  273 (356)
T 2w18_A          215 -----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT----------------LSV  273 (356)
T ss_dssp             -----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT----------------EEE
T ss_pred             -----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC----------------EEE
Confidence                 34444222  23468888999999865            343 5899999999887                444


Q ss_pred             cee-----eCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCC
Q 021160          143 QVY-----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEK  216 (316)
Q Consensus       143 ~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~s~~~d~  216 (316)
                      ..+     .+|...  +.+..+   ++.++++++.|++|+|||+.+++++.++.+|...+. .++|+|++++|++|+.|+
T Consensus       274 ~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          274 GVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             EEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred             EEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC
Confidence            433     245433  444444   388999999999999999999999999999987655 589999999999999999


Q ss_pred             cEEEecC
Q 021160          217 TVKLWAP  223 (316)
Q Consensus       217 ~i~iwd~  223 (316)
                      +|+|||+
T Consensus       349 TIklWd~  355 (356)
T 2w18_A          349 NIFVYHY  355 (356)
T ss_dssp             CEEEEEE
T ss_pred             cEEEecC
Confidence            9999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=1.8e-25  Score=184.65  Aligned_cols=222  Identities=16%  Similarity=0.244  Sum_probs=174.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+++.+....+.           +|...+.++.+.+   .++++|+.++.+++|+.....             
T Consensus        88 Dg~v~iw~~~~~~~~~~~~-----------~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~-------------  140 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMT-----------SHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAE-------------  140 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEE-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS-------------
T ss_pred             CCcEEEeecCCceeEEEec-----------CccceEEEeecCC---CEEEEEecCCceEeeecCCCc-------------
Confidence            6899999999877655544           3677787776654   689999999999999988765             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .......+|...+..+.+.+++++++++ .|+.|++||++++..            ..........+...  +.++++ 
T Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~--v~~~~~-  204 (318)
T 4ggc_A          141 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------------GWVPLQTFTQHQGA--VKAVAW-  204 (318)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT------------BSCCSEEECCCCSC--EEEEEE-
T ss_pred             -eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc------------cccceeeecccCCc--eEEEEe-
Confidence             2222336889999999999999988885 799999999987621            00123334455544  899998 


Q ss_pred             cCCCc-EE--EEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEecCCCCC-CCCCCCC
Q 021160          161 GPNDE-YV--MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       161 ~~~~~-~l--~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                      .+.+. .+  ++++.++.|++||........... +...+..++|+|+++.+++++  .|+.|++||+++++ +.++.+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH  283 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  283 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             cCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence            66554 33  467789999999999887765554 567899999999999877654  79999999999887 7788899


Q ss_pred             cccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ...|..++ +++++.++++++.|++|++||+.+.
T Consensus       284 ~~~V~~l~-~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          284 TSRVLSLT-MSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             SSCEEEEE-ECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CCCEEEEE-EcCCCCEEEEEecCCeEEEEECCCC
Confidence            99887776 8899999999999999999998654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=6.1e-26  Score=195.68  Aligned_cols=253  Identities=9%  Similarity=0.015  Sum_probs=187.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+....      ..+|...|.+++|+|++ .++++++.|+.|++||+++++             
T Consensus       143 ~~~i~~~d~~~g~~~~~~~~~~------~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~-------------  202 (433)
T 3bws_A          143 DEGMDVLDINSGQTVRLSPPEK------YKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLA-------------  202 (433)
T ss_dssp             SSSEEEEETTTCCEEEECCCHH------HHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCC-------------
T ss_pred             CCeEEEEECCCCeEeeecCccc------ccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCce-------------
Confidence            4679999998776543322211      12588899999999988 899999999999999998876             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       ....+ ..|...+.+++|+|+++.+ +++ .|+.|++||++++                +....+..+.   .+.+++|
T Consensus       203 -~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~----------------~~~~~~~~~~---~~~~~~~  261 (433)
T 3bws_A          203 -YKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK----------------LEIRKTDKIG---LPRGLLL  261 (433)
T ss_dssp             -EEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT----------------EEEEECCCCS---EEEEEEE
T ss_pred             -EEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC----------------cEEEEecCCC---CceEEEE
Confidence             22222 4677889999999999866 455 6999999999877                4555555432   3899999


Q ss_pred             ecCCCcEEEEec--------cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCCCCC
Q 021160          160 FGPNDEYVMSGS--------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       160 ~~~~~~~l~~~~--------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~~~~  230 (316)
                       +|+++++++++        .|+.|++||+.+++.+..+ .|...+.+++|+|+++. +++++.|+.|++||+.+++...
T Consensus       262 -~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          262 -SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             -CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence             99999999888        4889999999999887766 35568899999999976 5677899999999999776322


Q ss_pred             CCCCcccceeeeecCCCCceeEEecC---------------CCeEEEEEecccCccee---------EEeeccccccccc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTP---------------DVIMHVLRLQRRQTLAY---------RERRYNAADFESD  286 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~---------------d~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~  286 (316)
                      ...+...+..++ +++++.++++++.               ||.+++||+.+++....         ..+.|++..+...
T Consensus       340 ~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          340 SIPVFDKPNTIA-LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             EEECSSSEEEEE-ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred             EecCCCCCCeEE-EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEE
Confidence            222444454444 7788877776665               57999999876543221         2566677666544


Q ss_pred             -CCCCeEEEEecc
Q 021160          287 -EEEGETYLLGFS  298 (316)
Q Consensus       287 -~~~~~v~~~~~~  298 (316)
                       ..++.+.+|+++
T Consensus       419 ~~~d~~i~v~~~~  431 (433)
T 3bws_A          419 DFLDHQIRVYRRD  431 (433)
T ss_dssp             ETTTTEEEEEEET
T ss_pred             ECCCCeEEEEEec
Confidence             457788888775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.1e-24  Score=185.29  Aligned_cols=217  Identities=11%  Similarity=0.087  Sum_probs=165.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+....+..            ...+.+++|+|++..++++++.++.|++||+.+++.            
T Consensus        53 d~~i~v~d~~~~~~~~~~~~------------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~------------  108 (391)
T 1l0q_A           53 SNDVSIIDTATNNVIATVPA------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV------------  108 (391)
T ss_dssp             GTEEEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE------------
T ss_pred             CCeEEEEECCCCeEEEEEEC------------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE------------
Confidence            57899999988766544433            237999999999943445666789999999998862            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ...+ . +...+.+++|+|+++.+ +++ .++.|++||+.++                +....+..+..   +.+++|
T Consensus       109 --~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----------------~~~~~~~~~~~---~~~~~~  165 (391)
T 1l0q_A          109 --AGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----------------AVINTVSVGRS---PKGIAV  165 (391)
T ss_dssp             --EEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECCSS---EEEEEE
T ss_pred             --EEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----------------cEEEEEecCCC---cceEEE
Confidence              2222 2 23468999999999855 555 5999999999887                56666665432   789998


Q ss_pred             ecCCCcEE-EEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC-CCCCCCC
Q 021160          160 FGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       160 ~~~~~~~l-~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                       +|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|+|+++++++++   .++.|++||+.+++ +..+..+
T Consensus       166 -~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  243 (391)
T 1l0q_A          166 -TPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG  243 (391)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred             -CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence             8999877 677889999999999999887776 456789999999999988877   68999999998876 3344333


Q ss_pred             cccceeeeecCCCCcee-EEecCCCeEEEEEecccC
Q 021160          235 AEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~-~s~~~d~~~~~w~~~~~~  269 (316)
                      . .+..+. ++++++.+ ++++.|+.+++||+.+++
T Consensus       244 ~-~~~~~~-~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          244 P-DPAGIA-VTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             S-SEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             C-CccEEE-EccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            3 233444 77877766 788899999999988653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=2.1e-24  Score=185.99  Aligned_cols=235  Identities=10%  Similarity=-0.000  Sum_probs=176.5

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  113 (316)
                      ..+.+++|+|++ .++++++.++.|++||+.+++...         ...... ..+|...+.+++|++++++++++ .|+
T Consensus       123 ~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~---------~~~~~~-~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          123 FQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVR---------LSPPEK-YKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             SCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEE---------ECCCHH-HHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             CCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEee---------ecCccc-ccccCCceeEEEEcCCCEEEEEECCCC
Confidence            356689999955 788888899999999999876321         111112 25788899999999999988886 699


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCCeeEEEeec
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      .|++||++++                +....+..|...  +.+++| +|++++++ +++.++.|++||+.+++.+..+..
T Consensus       192 ~v~~~d~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  252 (433)
T 3bws_A          192 AVHVFDLKTL----------------AYKATVDLTGKW--SKILLY-DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK  252 (433)
T ss_dssp             EEEEEETTTC----------------CEEEEEECSSSS--EEEEEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred             EEEEEECCCc----------------eEEEEEcCCCCC--eeEEEE-cCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence            9999999887                567777777755  999999 89998874 555899999999999998888876


Q ss_pred             CccceEEEEEcCCCCeEEEEe--------CCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCc-eeEEecCCCeEEEE
Q 021160          193 DRHVVNQLEPHPHIPMFATCG--------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVL  263 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w  263 (316)
                      + ..+.+++|+|+++.+++++        .|+.|++||+.+++......+...+..+. ++++++ ++++++.++.+++|
T Consensus       253 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          253 I-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIV-SGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             C-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEE-ECSSTTEEEEEETTTTEEEEE
T ss_pred             C-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEE-ECCCCCEEEEEecCCCEEEEE
Confidence            5 4589999999999988887        48899999998876433333444454454 677765 56777999999999


Q ss_pred             EecccCccee---------EEeecccccccccCC---------------CCeEEEEeccCCC
Q 021160          264 RLQRRQTLAY---------RERRYNAADFESDEE---------------EGETYLLGFSDSD  301 (316)
Q Consensus       264 ~~~~~~~~~~---------~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~  301 (316)
                      ++.+++....         ..+.|++..+.....               +|.|++|+...+.
T Consensus       331 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          331 DLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             ECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            9886533221         145566554443322               5689999886654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-24  Score=185.99  Aligned_cols=264  Identities=11%  Similarity=0.007  Sum_probs=185.3

Q ss_pred             eeEEEEe--eCCCcceEEEeccccccccCCCCccceEEEEECC--------------CCCcEEEEEecC------CcEEE
Q 021160            4 FNMLFDL--RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--------------RNPNYFAVGGSD------EYARV   61 (316)
Q Consensus         4 ~v~vwd~--~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--------------~~~~~l~~g~~d------g~v~~   61 (316)
                      .|+|||+  .+.+........         +|...+..+++++              .+ ..++.++.+      +.|++
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~~s~~~~~~~~~~i~i  163 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYK---------VNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAYVVQTNGGQFPYELRV  163 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE---------ECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEEeCCCCCCCEEeeeEEE---------cChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEEEEecCCCCccceEEE
Confidence            8999999  776643211111         2566677666664              14 455555543      79999


Q ss_pred             EeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC---CcEEEEEcCCCCCCCCccCCccccc
Q 021160           62 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND---ELVYLFEKNMGLGPSPLSLSPEDLQ  137 (316)
Q Consensus        62 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~  137 (316)
                      ||+....               ...+ ..|...+.+++|+|+|+.|+++ .+   ..|++||+.++              
T Consensus       164 ~d~~g~~---------------~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--------------  213 (415)
T 2hqs_A          164 SDYDGYN---------------QFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------------  213 (415)
T ss_dssp             EETTSCS---------------CEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------------
T ss_pred             EcCCCCC---------------CEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------------
Confidence            9997542               2222 5677899999999999988774 45   38999999887              


Q ss_pred             cCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021160          138 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI  214 (316)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~  214 (316)
                        +. ..+..+...  +.+++| +|+|++|+ +++.++  .|++||+.+++. ..+..|...+.+++|+|+++.|+.++.
T Consensus       214 --~~-~~l~~~~~~--~~~~~~-spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~  286 (415)
T 2hqs_A          214 --AV-RQVASFPRH--NGAPAF-SPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD  286 (415)
T ss_dssp             --CE-EEEECCSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             --cE-EEeecCCCc--ccCEEE-cCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC
Confidence              33 456666654  999999 99999887 666555  499999998875 567778889999999999999888775


Q ss_pred             -CC--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC---CeEEEEEecccCcce--------eEEeeccc
Q 021160          215 -EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTLA--------YRERRYNA  280 (316)
Q Consensus       215 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d---~~~~~w~~~~~~~~~--------~~~~~~~~  280 (316)
                       ++  .|++||+.+++...+..+...+.... |++++++++.++.+   ..+.+|++.+++...        ...+.|++
T Consensus       287 ~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg  365 (415)
T 2hqs_A          287 QAGRPQVYKVNINGGAPQRITWEGSQNQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNG  365 (415)
T ss_dssp             TTSSCEEEEEETTSSCCEECCCSSSEEEEEE-ECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTS
T ss_pred             CCCCcEEEEEECCCCCEEEEecCCCcccCeE-ECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCC
Confidence             44  67778998877655555555554444 88999888877754   689999987653221        12677888


Q ss_pred             ccccccCCCC---eEEEEeccCCCCCCCCC--Ccceeeec
Q 021160          281 ADFESDEEEG---ETYLLGFSDSDASSEGG--GNQRECII  315 (316)
Q Consensus       281 ~~~~~~~~~~---~v~~~~~~~~~~~~~~~--~~~~~~~~  315 (316)
                      ..+.....++   .+++++...+......+  +..+.+-|
T Consensus       366 ~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~  405 (415)
T 2hqs_A          366 TMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW  405 (415)
T ss_dssp             SEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEE
T ss_pred             CEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcc
Confidence            7776655444   79999987554333333  45555544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=5.5e-23  Score=176.19  Aligned_cols=214  Identities=9%  Similarity=0.055  Sum_probs=163.6

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC---cEEEEeCcCCcccCCCCCCCCc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE---YARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg---~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +.|++||+.... ...+..           |...|.+++|+|++ ++|++++.++   .|++||+.+++.          
T Consensus       159 ~~i~i~d~~g~~-~~~l~~-----------~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~----------  215 (415)
T 2hqs_A          159 YELRVSDYDGYN-QFVVHR-----------SPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAV----------  215 (415)
T ss_dssp             EEEEEEETTSCS-CEEEEE-----------ESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE----------
T ss_pred             ceEEEEcCCCCC-CEEEeC-----------CCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcE----------
Confidence            789999997543 333333           56789999999999 8999988775   999999998762          


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEE-Ee-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                          . .+ ..|...+.+++|+|+|+.|+ ++ .++  .|++||+.++                 ....+..+...  +.
T Consensus       216 ----~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~  270 (415)
T 2hqs_A          216 ----R-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-----------------QIRQVTDGRSN--NT  270 (415)
T ss_dssp             ----E-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----------------CEEECCCCSSC--EE
T ss_pred             ----E-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-----------------CEEeCcCCCCc--cc
Confidence                1 12 45667899999999999666 44 344  4999999876                 33556666654  89


Q ss_pred             eEEEecCCCcEEEEecc-CC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCC
Q 021160          156 GVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFP  229 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~  229 (316)
                      +++| +|+|++|++++. ++  .|++||+.+++. ..+..+...+.+++|+|++++|++++.+   ..|++||+.+++..
T Consensus       271 ~~~~-spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          271 EPTW-FPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             EEEE-CTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             ceEE-CCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            9999 999999988876 44  788889988764 4555677788999999999998888754   58999999988765


Q ss_pred             CCCCCcccceeeeecCCCCceeEEecCCC---eEEEEEeccc
Q 021160          230 PLPDNAEKIMKANKQGREDHSRITLTPDV---IMHVLRLQRR  268 (316)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~---~~~~w~~~~~  268 (316)
                      .+..+. .+... .|+++++.++.++.++   .+.+|++..+
T Consensus       349 ~l~~~~-~~~~~-~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          349 VLSSTF-LDETP-SLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             ECCCSS-SCEEE-EECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             EecCCC-CcCCe-EEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            565554 44444 4889999888887776   7899997644

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.3e-21  Score=159.49  Aligned_cols=220  Identities=9%  Similarity=0.049  Sum_probs=157.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC-CcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~-~~~~~~~~~~~~~~   80 (316)
                      ++.|++||+.+.+..... .           |...|.+++|+|++ ++|++++ ++.|++||+.+ ++.           
T Consensus        21 ~~~i~~~d~~~~~~~~~~-~-----------~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~-----------   75 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVW-Q-----------TPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSP-----------   75 (297)
T ss_dssp             CEEEEEEETTTTEEEEEE-E-----------ESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSC-----------
T ss_pred             ceeEEEEeCCCCceeeec-c-----------CCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCc-----------
Confidence            578999999876654322 2           46789999999999 7888876 78999999998 652           


Q ss_pred             ecccccccCCC-cccEEEEEEccCCCeEEEec---CCcEEEEEc--CCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160           81 TFCPRHLIGKN-NIHITGLAYSNTSELLISYN---DELVYLFEK--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus        81 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~---d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                         . .+...+ ...+.+++|+|++++|+++.   ++...+|.+  .++                 ....+..+. .  +
T Consensus        76 ---~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~-~--~  131 (297)
T 2ojh_A           76 ---E-KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----------------TPRLMTKNL-P--S  131 (297)
T ss_dssp             ---E-ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----------------CCEECCSSS-S--E
T ss_pred             ---e-EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----------------ceEEeecCC-C--c
Confidence               1 111233 46788999999999777743   345555554  443                 233333332 2  7


Q ss_pred             eeEEEecCCCcEEE-EeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEecCC--CCCCC
Q 021160          155 KGVNFFGPNDEYVM-SGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM--PTDFP  229 (316)
Q Consensus       155 ~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~--~~~~~  229 (316)
                      ..++| +|++++|+ ++..++.+++|++.. +.....+..+...+.+++|+|+++.|+.++ .++.+++|++.  .....
T Consensus       132 ~~~~~-spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          132 YWHGW-SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEEEE-CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             cceEE-CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence            88898 99999887 778899999998642 333456667788899999999999877665 58999999875  34455


Q ss_pred             CCCCCcccceeeeecCCCCceeEEecCC-----------CeEEEEEecccCcce
Q 021160          230 PLPDNAEKIMKANKQGREDHSRITLTPD-----------VIMHVLRLQRRQTLA  272 (316)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----------~~~~~w~~~~~~~~~  272 (316)
                      .+..+...+.... +++++++++.++.+           ..+.+|++.+++...
T Consensus       211 ~~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  263 (297)
T 2ojh_A          211 RITDSAYGDWFPH-PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET  263 (297)
T ss_dssp             ECCCCSEEEEEEE-ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred             EEecCCcccCCeE-ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence            5655655554444 78888888877765           679999998775543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=3.4e-22  Score=171.95  Aligned_cols=223  Identities=12%  Similarity=0.073  Sum_probs=150.2

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC-CCCCCceecccccccCCCcccEEEEEEccCCCeEE----
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI-SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI----  108 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----  108 (316)
                      ...++.+++++++ .++++++.++ +++|+.......... .....+..+..... ..+...|.+++|+|++++|+    
T Consensus        36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEe
Confidence            3468899999988 7899998887 899886532100000 00011111111111 23466899999999999888    


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCee
Q 021160          109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      ++ .|+.|++||+.+........     .........+.+|...  |.+++| +|+ +.+|++++.||.|++||+++++.
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~h~~~--V~~v~~-~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQ-----KRPFAYHKLLKDAGGM--VIDMKW-NPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSS-----CCCSEEEECCCSGGGS--EEEEEE-CSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             ccCCCceEEEEEccccccCCcCC-----cceeeeeeccCCCCCc--eEEEEE-CCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            64 59999999987531000000     0000113445567765  999999 787 88999999999999999999887


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC-------CCcccceeeeecCCCCceeEE-ecCCC
Q 021160          187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-------DNAEKIMKANKQGREDHSRIT-LTPDV  258 (316)
Q Consensus       187 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s-~~~d~  258 (316)
                      +....+|...|.+++|+|++++|++|+.||.|++||++......+.       .|...+..+. |.++..++++ ...+|
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVL-WIGTYVFAIVYAAADG  263 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEE-EEETTEEEEEEEETTC
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEE-EecCceEEEEEccCCC
Confidence            7777788999999999999999999999999999999832222111       1233566666 4555656544 33332


Q ss_pred             ------eEEEEEeccc
Q 021160          259 ------IMHVLRLQRR  268 (316)
Q Consensus       259 ------~~~~w~~~~~  268 (316)
                            .+++|++.+.
T Consensus       264 ~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          264 TLETSPDVVMALLPKK  279 (434)
T ss_dssp             CSSSCCEEEEEECCCT
T ss_pred             ccCCCCceEEEEeccC
Confidence                  4899999865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=2.4e-20  Score=156.11  Aligned_cols=259  Identities=7%  Similarity=0.018  Sum_probs=174.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|.+||+.+.+....+..            ...+..++|+|++..++++...++.|.+||..+++....+......  
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--  133 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHN------------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK--  133 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEE------------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC--
T ss_pred             CccEEEEcCCCCeEEEEEec------------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc--
Confidence            46899999988776555543            2246789999999445566667899999999988732211000000  


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                          .........+.+++|+|+++.++. .  .++.|.+||..++                +....+..+...  +.+++
T Consensus       134 ----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~~--~~~~~  191 (353)
T 3vgz_A          134 ----RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----------------KLKTAIQNTGKM--STGLA  191 (353)
T ss_dssp             ----CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----------------EEEEEECCCCTT--CCCCE
T ss_pred             ----cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----------------ceEEEecCCCCc--cceEE
Confidence                000001123688999999985544 3  3788999999887                555556534433  78889


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeec----CccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC-CCCCC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLP  232 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~  232 (316)
                      | +|+++++++++.++.+.+||+.+++.+..+..    +...+..++|+|+++.++.++ .++.|.+||+.+++ ...+.
T Consensus       192 ~-s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          192 L-DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             E-ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             E-CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            8 99999999999999999999999998887764    455678899999999766555 45899999998876 22222


Q ss_pred             CCcccceeeeecCCCCc-eeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCC
Q 021160          233 DNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS  300 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  300 (316)
                      .. .. ... .++++++ ++++...++.+.+||+.+++.............++...+...+|+......
T Consensus       271 ~~-~~-~~~-~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~  336 (353)
T 3vgz_A          271 AP-ES-LAV-LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKS  336 (353)
T ss_dssp             CS-SC-CCE-EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECCC
T ss_pred             cC-CC-ceE-EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcccc
Confidence            11 11 233 3667776 556666799999999987755443333223344444555555777665433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=8.8e-21  Score=157.52  Aligned_cols=252  Identities=6%  Similarity=-0.050  Sum_probs=168.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.|.+||+.+.+....+...           ...+ .++|+|++..+++++..++.|.+||+.+++..           
T Consensus        19 ~~~v~~~d~~~~~~~~~~~~~-----------~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----------   75 (331)
T 3u4y_A           19 LRRISFFSTDTLEILNQITLG-----------YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-----------   75 (331)
T ss_dssp             GTEEEEEETTTCCEEEEEECC-----------CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-----------
T ss_pred             CCeEEEEeCcccceeeeEEcc-----------CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-----------
Confidence            578999999887765555432           3345 99999999334444455899999999987620           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEec-C-C--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYN-D-E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                        ...+ ..+..+..+++|+|+|++++++. + +  .|.+||+.++                +....+..+. .  ..++
T Consensus        76 --~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~----------------~~~~~~~~~~-~--~~~~  133 (331)
T 3u4y_A           76 --VVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN----------------KFISTIPIPY-D--AVGI  133 (331)
T ss_dssp             --EEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT----------------EEEEEEECCT-T--EEEE
T ss_pred             --EEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC----------------CeEEEEECCC-C--ccce
Confidence              1111 33344455599999999777644 3 3  8999999887                4555555433 2  6899


Q ss_pred             EEecCCCcEEEEe-ccCCe-EEEEeccCCeeE----EEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCC--
Q 021160          158 NFFGPNDEYVMSG-SDCGH-LFIWKKKGGKLV----RLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF--  228 (316)
Q Consensus       158 ~~~~~~~~~l~~~-~~dg~-v~~wd~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~--  228 (316)
                      +| +|+|++++++ ..++. +.+|++.....+    .........+..++|+|+++++ +++..++.|++||+.+++.  
T Consensus       134 ~~-spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          134 AI-SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             EE-CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             EE-CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            99 9999866554 55577 999998754332    1111234567899999999965 5555789999999987664  


Q ss_pred             -C-CCCCCcccceeeeecCCCCceeE-EecCCCeEEEEEecccCcce---------------e----EEeeccccccc-c
Q 021160          229 -P-PLPDNAEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRRQTLA---------------Y----RERRYNAADFE-S  285 (316)
Q Consensus       229 -~-~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~w~~~~~~~~~---------------~----~~~~~~~~~~~-~  285 (316)
                       . .+. ....+..+. +++++++++ +...++.+.+|++.+++...               +    ..+.|++..+. +
T Consensus       213 ~~~~~~-~~~~~~~~~-~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          213 LLNAVG-TNNLPGTIV-VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS  290 (331)
T ss_dssp             EEEEEE-CSSCCCCEE-ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred             eeeecc-CCCCCceEE-ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence             2 222 222333333 788888554 55567889999988764410               0    14566666553 4


Q ss_pred             cCCCCeEEEEeccCCC
Q 021160          286 DEEEGETYLLGFSDSD  301 (316)
Q Consensus       286 ~~~~~~v~~~~~~~~~  301 (316)
                      ..+++.|.+|+++...
T Consensus       291 ~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          291 ANISRELKVFTISGKV  306 (331)
T ss_dssp             ETTTTEEEEEETTSCE
T ss_pred             cCCCCcEEEEEecCCc
Confidence            5667789999987654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=2e-20  Score=165.20  Aligned_cols=252  Identities=10%  Similarity=0.056  Sum_probs=177.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeC--cCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI--RKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~--~~~~~~~~~~~~~~~   79 (316)
                      +|.|.+||..+.+....+...          |.  +..++|+|++ +++++++.|+.|++||+  .+++           
T Consensus       158 d~~V~v~D~~t~~~~~~i~~g----------~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~-----------  213 (543)
T 1nir_A          158 AGQIALVDGDSKKIVKVIDTG----------YA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPT-----------  213 (543)
T ss_dssp             GTEEEEEETTTCCEEEEEECS----------TT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCE-----------
T ss_pred             CCeEEEEECCCceEEEEEecC----------cc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCc-----------
Confidence            578999999888776655432          32  8899999999 89999999999999999  6665           


Q ss_pred             eecccccccCCCcccEEEEEEcc----CCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc----
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSN----TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----  149 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (316)
                         +...+ . +......++|+|    +|++++++  .+++|.+||..+.                ++++.+..+.    
T Consensus       214 ---~~~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~----------------~~~~~i~~~g~~~~  272 (543)
T 1nir_A          214 ---KVAEI-K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL----------------EPKQIVSTRGMTVD  272 (543)
T ss_dssp             ---EEEEE-E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC----------------CEEEEEECCEECSS
T ss_pred             ---EEEEE-e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc----------------ccceeecccCcccC
Confidence               22222 2 234578999999    99977764  4899999999877                5666665421    


Q ss_pred             -----CCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEE-EeCCCcEEE
Q 021160          150 -----NSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFAT-CGIEKTVKL  220 (316)
Q Consensus       150 -----~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~i  220 (316)
                           ....+..+.+ +|++ .++++...++.|.+||+.+.+.+.  .+. +...+..++|+|++++|++ +..+++|.+
T Consensus       273 ~~~~~~~~~v~~i~~-s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v  350 (543)
T 1nir_A          273 TQTYHPEPRVAAIIA-SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV  350 (543)
T ss_dssp             SCCEESCCCEEEEEE-CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred             ccccccCCceEEEEE-CCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence                 0113788988 7755 456777889999999998766544  333 5567888999999998654 456899999


Q ss_pred             ecCCCCC-CCCCCC----CcccceeeeecCCC-CceeEEec-CCCeEEEEEecc-------cCc----------ceeEEe
Q 021160          221 WAPMPTD-FPPLPD----NAEKIMKANKQGRE-DHSRITLT-PDVIMHVLRLQR-------RQT----------LAYRER  276 (316)
Q Consensus       221 wd~~~~~-~~~~~~----~~~~~~~~~~~~~~-~~~~~s~~-~d~~~~~w~~~~-------~~~----------~~~~~~  276 (316)
                      ||+.+++ ...+..    |......  +..++ +..+++.. .|++|.+|++.+       .+.          .....+
T Consensus       351 ~D~~tg~l~~~i~~g~~ph~g~g~~--~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~  428 (543)
T 1nir_A          351 IDSKDRRLSALVDVGKTPHPGRGAN--FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT  428 (543)
T ss_dssp             EETTTTEEEEEEECSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             EECCCCeEEEeeccCCCCCCCCCcc--cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence            9999886 222321    3322222  23454 66677765 689999999976       211          122356


Q ss_pred             ecccccccccC-------CCCeEEEEeccCCCC
Q 021160          277 RYNAADFESDE-------EEGETYLLGFSDSDA  302 (316)
Q Consensus       277 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~  302 (316)
                      .|++..+..+.       .++.|.+||..+.+.
T Consensus       429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             CCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            67777766654       156799999887664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4e-20  Score=159.10  Aligned_cols=169  Identities=9%  Similarity=0.064  Sum_probs=126.5

Q ss_pred             CccceEEEEECCCCCcEEE----EEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC-CCeE
Q 021160           33 NSIRLNAIVIDPRNPNYFA----VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL  107 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~----~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  107 (316)
                      |...|++++|+|++ ++|+    +|+.|+.|++||+.+.... ......++   .......+|...|.+++|+|+ +.+|
T Consensus        91 ~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~-~~~~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           91 MKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNE-AKQQKRPF---AYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             CSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCT-TCSSCCCS---EEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccC-CcCCccee---eeeeccCCCCCceEEEEECCCCCCEE
Confidence            56689999999999 7888    7889999999999754100 00000111   112233678999999999998 6778


Q ss_pred             EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160          108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      ++ +.|++|++||++++                .......+|...  +.+++| +|+|++|++|+.||.|++||++ ++.
T Consensus       166 as~s~Dg~v~iwD~~~~----------------~~~~~~~~~~~~--v~~v~w-spdg~~lasgs~dg~v~iwd~~-~~~  225 (434)
T 2oit_A          166 AVCLADGSIAVLQVTET----------------VKVCATLPSTVA--VTSVCW-SPKGKQLAVGKQNGTVVQYLPT-LQE  225 (434)
T ss_dssp             EEEETTSCEEEEEESSS----------------EEEEEEECGGGC--EEEEEE-CTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred             EEEECCCeEEEEEcCCC----------------cceeeccCCCCc--eeEEEE-cCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence            87 57999999999876                344455667655  999999 9999999999999999999998 665


Q ss_pred             EEEeecC-------ccceEEEEEcCCCCeEEE-EeCCCc------EEEecCCCC
Q 021160          187 VRLMVGD-------RHVVNQLEPHPHIPMFAT-CGIEKT------VKLWAPMPT  226 (316)
Q Consensus       187 ~~~~~~~-------~~~v~~~~~~p~~~~l~s-~~~d~~------i~iwd~~~~  226 (316)
                      ...+..|       ...|.+++|++++.++++ .+.||.      +++|+++..
T Consensus       226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            6655443       238999999998877644 444533      899998765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=1.1e-19  Score=151.30  Aligned_cols=254  Identities=11%  Similarity=0.119  Sum_probs=162.2

Q ss_pred             ceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC-CcEEEEeCc--CCcccCCCCCCC
Q 021160            2 VLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-EYARVYDIR--KCHWYSPISSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d-g~v~~wd~~--~~~~~~~~~~~~   77 (316)
                      +|.|++||+..... .......          |...+.+++|+|++ +++++++.+ +.|.+|++.  +++..       
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~-------   75 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVVD----------VPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALT-------   75 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEE----------CSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE-------
T ss_pred             CCeEEEEEECCCCcEEEeeeEe----------cCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCcee-------
Confidence            57899999964322 2222222          45678899999999 777777765 999999997  44311       


Q ss_pred             CceecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160           78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK  155 (316)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (316)
                           ....+ ..+ ..+..++|+|++++++. + .++.|.+||+..+.             .......+..+.   .+.
T Consensus        76 -----~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------------~~~~~~~~~~~~---~~~  132 (343)
T 1ri6_A           76 -----FAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------------PVGVVDVVEGLD---GCH  132 (343)
T ss_dssp             -----EEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------------EEEEEEEECCCT---TBC
T ss_pred             -----ecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-------------cccccccccCCC---Cce
Confidence                 11111 112 26789999999996544 4 48899999994220             002333333332   278


Q ss_pred             eEEEecCCCcEEEEec-cCCeEEEEeccC-CeeEE----Eeec-CccceEEEEEcCCCCeEEE-EeCCCcEEEecCCC--
Q 021160          156 GVNFFGPNDEYVMSGS-DCGHLFIWKKKG-GKLVR----LMVG-DRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMP--  225 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~-~dg~v~~wd~~~-~~~~~----~~~~-~~~~v~~~~~~p~~~~l~s-~~~d~~i~iwd~~~--  225 (316)
                      +++| +|+++++++++ .++.|++||+.+ ++...    .+.. ....+..++|+|++++++. +..++.|.+|++..  
T Consensus       133 ~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~  211 (343)
T 1ri6_A          133 SANI-SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH  211 (343)
T ss_dssp             CCEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred             EEEE-CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            8998 99999888777 899999999987 65432    2232 2347888999999997654 44889999999954  


Q ss_pred             CCCC------CCCCC---cccceeeeecCCCCceeE-EecCCCeEEEEEecc--cCcce-----------eEEeeccccc
Q 021160          226 TDFP------PLPDN---AEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQR--RQTLA-----------YRERRYNAAD  282 (316)
Q Consensus       226 ~~~~------~~~~~---~~~~~~~~~~~~~~~~~~-s~~~d~~~~~w~~~~--~~~~~-----------~~~~~~~~~~  282 (316)
                      +...      .++..   ...+.. ..+++++++++ +...++.+.+|++..  +....           ...+.|++..
T Consensus       212 g~~~~~~~~~~~~~~~~~~~~~~~-i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  290 (343)
T 1ri6_A          212 GNIECVQTLDMMPENFSDTRWAAD-IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY  290 (343)
T ss_dssp             SCCEEEEEEECSCTTCCSCCCEEE-EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred             CcEEEEeeccccCccccccCCccc-eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCE
Confidence            3221      11111   112222 34778776655 666899999999972  21111           1245566654


Q ss_pred             cccc-CCCCeEEEEecc
Q 021160          283 FESD-EEEGETYLLGFS  298 (316)
Q Consensus       283 ~~~~-~~~~~v~~~~~~  298 (316)
                      +... ..++.+.+|++.
T Consensus       291 l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          291 LIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEECTTTCEEEEEEEE
T ss_pred             EEEecCCCCeEEEEEEc
Confidence            4444 356778888554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=7.1e-20  Score=152.14  Aligned_cols=224  Identities=8%  Similarity=0.007  Sum_probs=155.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCcc-ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSI-RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +|.|.+||+.+.+....+...          +.. .+..++|+|++..+++++..++.|.+||+.+++....        
T Consensus        10 ~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~--------   71 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVITIA----------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR--------   71 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECT----------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE--------
T ss_pred             CCeEEEEECCCCcEEEEEEcC----------CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee--------
Confidence            578999999887665544432          111 3678999999944556667789999999988763211        


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-------------cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                       +.... ...|...+..++|+|+|+.++.+             .++.|.+||+.++                +....+..
T Consensus        72 -~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------------~~~~~~~~  133 (337)
T 1pby_B           72 -IDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------------SRRKAFEA  133 (337)
T ss_dssp             -EECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------------EEEEEEEC
T ss_pred             -EEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----------------cEEEEEeC
Confidence             11000 00122356689999999866664             4799999999876                45555543


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc---------------------------------
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR---------------------------------  194 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---------------------------------  194 (316)
                       ...  +.+++| +|++++++++  ++.|++||+.+++....+..+.                                 
T Consensus       134 -~~~--~~~~~~-s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  207 (337)
T 1pby_B          134 -PRQ--ITMLAW-ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             -CSS--CCCEEE-CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             -CCC--cceeEE-CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence             222  778888 9999988887  5789999998887665443221                                 


Q ss_pred             ---------------------------------cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC-CCCCCCccccee
Q 021160          195 ---------------------------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK  240 (316)
Q Consensus       195 ---------------------------------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~  240 (316)
                                                       ..+..++|+|++++++++  ++.|++||+.+++. ..+. ....+..
T Consensus       208 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~  284 (337)
T 1pby_B          208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYS  284 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred             ccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCceee
Confidence                                             234468999999998877  68999999987762 2222 1223334


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      +. ++++++++++++.++.+.+|++.+++..
T Consensus       285 ~~-~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          285 VN-VSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EE-ECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             EE-ECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            44 7788888888888999999999887554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=1.4e-20  Score=172.57  Aligned_cols=224  Identities=12%  Similarity=0.039  Sum_probs=154.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC---------CcEEEEeCcCCcccCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSP   72 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d---------g~v~~wd~~~~~~~~~   72 (316)
                      +|.|++||+.+.+....+..+..        +...|.+++|+|+| ++|++++.+         +.+.+||+.+++..  
T Consensus        36 dg~i~~~d~~~g~~~~~~~~~~~--------~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--  104 (723)
T 1xfd_A           36 KGTVRLWNVETNTSTVLIEGKKI--------ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--  104 (723)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTT--------TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--
T ss_pred             CCCEEEEECCCCcEEEEeccccc--------cccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceE--
Confidence            57899999998876544432211        11248999999999 888888764         77889999987621  


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC-
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-  151 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (316)
                                .. .....|...+..++|+|+|+.|+.+.++.|++||+.++                +..+....+... 
T Consensus       105 ----------~l-~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g----------------~~~~~~~~~~~~~  157 (723)
T 1xfd_A          105 ----------SL-DPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK----------------QAIRVVSTGKEGV  157 (723)
T ss_dssp             ----------EC-CCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS----------------CCEEEECCCBTTT
T ss_pred             ----------ec-cCCccccccccccEECCCCCEEEEEECCeEEEEECCCC----------------ceEEEecCCCCCc
Confidence                      01 11134455588899999999998877799999999887                343333332221 


Q ss_pred             ---------------ceeeeEEEecCCCcEEEEeccCC----------------------------------eEEEEecc
Q 021160          152 ---------------QTVKGVNFFGPNDEYVMSGSDCG----------------------------------HLFIWKKK  182 (316)
Q Consensus       152 ---------------~~i~~~~~~~~~~~~l~~~~~dg----------------------------------~v~~wd~~  182 (316)
                                     ..+.+++| +|+|++|++++.++                                  .|++||+.
T Consensus       158 ~~~g~~~~v~~ee~~~~~~~~~~-SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~  236 (723)
T 1xfd_A          158 IYNGLSDWLYEEEILKTHIAHWW-SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (723)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEE-CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eECcccceeEEEEeccCcceEEE-CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence                           01368998 99999999987553                                  79999999


Q ss_pred             CCeeEEEeecC------ccceEEEEEcCCCCeEEEEeC----CCcEEEecCCCCCCCCCC-CC-cccce---eeeecCCC
Q 021160          183 GGKLVRLMVGD------RHVVNQLEPHPHIPMFATCGI----EKTVKLWAPMPTDFPPLP-DN-AEKIM---KANKQGRE  247 (316)
Q Consensus       183 ~~~~~~~~~~~------~~~v~~~~~~p~~~~l~s~~~----d~~i~iwd~~~~~~~~~~-~~-~~~~~---~~~~~~~~  247 (316)
                      +++....+..+      ...+..++|+|+++++++.+.    +..|++||+.+++...+. .+ ...+.   ....|+++
T Consensus       237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence            88865666554      567899999999998876643    357999999887633221 11 11111   13347888


Q ss_pred             CceeEE--ecCCC------eEEEEE
Q 021160          248 DHSRIT--LTPDV------IMHVLR  264 (316)
Q Consensus       248 ~~~~~s--~~~d~------~~~~w~  264 (316)
                      ++.++.  ...++      .+.+|+
T Consensus       317 g~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          317 GRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CCeEEEEEecccCCCcceeEEEEEe
Confidence            886664  45666      456666

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=3.5e-19  Score=157.31  Aligned_cols=260  Identities=10%  Similarity=0.069  Sum_probs=176.8

Q ss_pred             ceeeEEEEe--eCCCcceEEEeccccccccCCCCccceEEEEECC----CCCcEEEEEe-cCCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDL--RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP----RNPNYFAVGG-SDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~--~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~----~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~   74 (316)
                      +|.|++||+  .+.+....+.            +...+..++|+|    ++ +++++++ .+++|.+||..++++...+.
T Consensus       199 d~~V~v~D~~~~t~~~~~~i~------------~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~  265 (543)
T 1nir_A          199 DARIDMIDLWAKEPTKVAEIK------------IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVS  265 (543)
T ss_dssp             TSEEEEEETTSSSCEEEEEEE------------CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEECcCCCCcEEEEEe------------cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeec
Confidence            478999999  5554433332            233578999999    99 7887777 58999999998887432211


Q ss_pred             CCCCceecccccccCCCc-ccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcc--eeeCCc
Q 021160           75 SDTPVDTFCPRHLIGKNN-IHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--VYSGHR  149 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  149 (316)
                      ....    ..... ..|. ..+..+.++|++. ++++. .+++|.+||+.+.                +.+.  .+. +.
T Consensus       266 ~~g~----~~~~~-~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~----------------~~l~~~~i~-~~  323 (543)
T 1nir_A          266 TRGM----TVDTQ-TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI----------------DNLTVTSIG-AA  323 (543)
T ss_dssp             CCEE----CSSSC-CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS----------------SSCEEEEEE-CC
T ss_pred             ccCc----ccCcc-ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC----------------CcceeEEec-cC
Confidence            0000    00000 0122 3688999999887 45554 6899999999876                3332  332 33


Q ss_pred             CCceeeeEEEecCCCcEEEEe-ccCCeEEEEeccCCeeEEEeec----CccceEEEEEcCC-CCeEEEEe-CCCcEEEec
Q 021160          150 NSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPH-IPMFATCG-IEKTVKLWA  222 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~----~~~~v~~~~~~p~-~~~l~s~~-~d~~i~iwd  222 (316)
                        ..+.++.| +|++++++++ ..+++|.+||+.+++++..+..    |.+....+ ++|+ ++.+++++ .|++|.+||
T Consensus       324 --~~~~~~~~-spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          324 --PFLHDGGW-DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             --SSCCCEEE-CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             --cCccCceE-CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence              23788999 9999977655 5689999999999999988874    55444443 5787 66677775 689999999


Q ss_pred             CCC-------CC-CCCCCCCcccceeeeecCCCCceeEEecC-------CCeEEEEEecccCcc----------------
Q 021160          223 PMP-------TD-FPPLPDNAEKIMKANKQGREDHSRITLTP-------DVIMHVLRLQRRQTL----------------  271 (316)
Q Consensus       223 ~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-------d~~~~~w~~~~~~~~----------------  271 (316)
                      +.+       .+ +.++..+......+. ++++++.+.+.+.       +..|.+||+.+.+..                
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~-~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~  478 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIK-THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA  478 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEE-CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEE-cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence            987       33 455555655554444 7889989888762       679999999865433                


Q ss_pred             ---eeEEeeccccccccc-----CCCCeEEEEeccCCC
Q 021160          272 ---AYRERRYNAADFESD-----EEEGETYLLGFSDSD  301 (316)
Q Consensus       272 ---~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~  301 (316)
                         ...++.+++..+...     ++++.|.+||...++
T Consensus       479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence               122677777776632     356778888876653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=7.5e-20  Score=168.12  Aligned_cols=212  Identities=12%  Similarity=0.097  Sum_probs=148.4

Q ss_pred             ccceEEEEECCCCCcEEEEEec-CC-----cEEEEeCcCCcccCCCCCCCCc------e----ecccccccCCCcccEEE
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGS-DE-----YARVYDIRKCHWYSPISSDTPV------D----TFCPRHLIGKNNIHITG   97 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~-dg-----~v~~wd~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~i~~   97 (316)
                      ...+.+++|+|+| ++|++++. |+     .|++||+.+++...........      .    ....... ......+.+
T Consensus        36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQR-IAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred             CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhh-hccccCcce
Confidence            4568999999999 88998887 88     8999999988632111000000      0    0000000 000034788


Q ss_pred             EEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCC--CcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe
Q 021160           98 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  175 (316)
Q Consensus        98 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  175 (316)
                      ++|+|+|++|+++.++.|++||+.++                .  ....+..+...  +..++| +|+|++|+.++ ++.
T Consensus       114 ~~~SpDg~~l~~~~~~~i~~~d~~~~----------------~~~~~~~l~~~~~~--~~~~~~-SPDG~~la~~~-~~~  173 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLGGELYLYDLKQE----------------GKAAVRQLTHGEGF--ATDAKL-SPKGGFVSFIR-GRN  173 (741)
T ss_dssp             CEECTTSSEEEEEETTEEEEEESSSC----------------STTSCCBCCCSSSC--EEEEEE-CTTSSEEEEEE-TTE
T ss_pred             eEECCCCCEEEEEeCCcEEEEECCCC----------------CcceEEEcccCCcc--cccccC-CCCCCEEEEEe-CCc
Confidence            99999999888876799999999875                2  34445556544  899999 99999999987 469


Q ss_pred             EEEEeccCCeeEEEeecCccc----------------eEEEEEcCCCCeEEEEeCCC-----------------------
Q 021160          176 LFIWKKKGGKLVRLMVGDRHV----------------VNQLEPHPHIPMFATCGIEK-----------------------  216 (316)
Q Consensus       176 v~~wd~~~~~~~~~~~~~~~~----------------v~~~~~~p~~~~l~s~~~d~-----------------------  216 (316)
                      |++||+.+++.......+...                +..++|+|++++|++++.|+                       
T Consensus       174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            999999988876554444332                47799999999999987765                       


Q ss_pred             ----------cEEEecCCC-CCCCCCC---CCcccceeeeecCCCCceeEEec-----CCCeEEEEEecccC
Q 021160          217 ----------TVKLWAPMP-TDFPPLP---DNAEKIMKANKQGREDHSRITLT-----PDVIMHVLRLQRRQ  269 (316)
Q Consensus       217 ----------~i~iwd~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~-----~d~~~~~w~~~~~~  269 (316)
                                .|++||+.+ ++...+.   .+...+.... | ++++.++..+     .+..|.+||+.+++
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVN-W-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEE-E-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEE-e-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence                      789999988 7643322   3555565665 6 8888877554     35789999987764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=1.8e-19  Score=150.41  Aligned_cols=222  Identities=9%  Similarity=0.035  Sum_probs=151.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.|++||+.+.+....+...          ....+..++|+|++..+++++..++.|.+||+.+++..           
T Consensus        20 ~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~-----------   78 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCVMP----------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-----------   78 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEECS----------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------
T ss_pred             CCeEEEEECCCCcEEEEEecC----------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE-----------
Confidence            578999999887665555432          11246789999999334556667899999999987632           


Q ss_pred             cccccccCCC-----cccEEEEEEccCCCeEEEe-c------------CCcEEEEEcCCCCCCCCccCCccccccCCCcc
Q 021160           82 FCPRHLIGKN-----NIHITGLAYSNTSELLISY-N------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ  143 (316)
Q Consensus        82 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  143 (316)
                         ..+...+     ...+..++|+|+|++++++ .            ++.|.+||+.++.             ..+...
T Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~  142 (349)
T 1jmx_B           79 ---FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-------------EAKPVR  142 (349)
T ss_dssp             ---EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-------------GBCCSE
T ss_pred             ---EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-------------ccceee
Confidence               1111111     2346789999999977764 3            4899999998741             002223


Q ss_pred             eeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc-----------------------------
Q 021160          144 VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-----------------------------  194 (316)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-----------------------------  194 (316)
                      .+..+. .  +.+++| +|+++ +++++.  .|++||+.+++.+..+..+.                             
T Consensus       143 ~~~~~~-~--~~~~~~-s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (349)
T 1jmx_B          143 TFPMPR-Q--VYLMRA-ADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT  215 (349)
T ss_dssp             EEECCS-S--CCCEEE-CTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             eccCCC-c--ccceeE-CCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence            333322 2  888998 99999 555543  49999999888776664321                             


Q ss_pred             ---------------------------------------cceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCCC-CCCCC
Q 021160          195 ---------------------------------------HVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPD  233 (316)
Q Consensus       195 ---------------------------------------~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~  233 (316)
                                                             ..+..++|+| ++++++++  ++.|.+||+.+++. ..+. 
T Consensus       216 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-  292 (349)
T 1jmx_B          216 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-  292 (349)
T ss_dssp             EEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-
T ss_pred             eeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-
Confidence                                                   1345677889 99998877  88999999988763 2322 


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ....+..+. +++++..+++++.++.+.+||+.+.+..
T Consensus       293 ~~~~~~~~~-~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          293 LDHTYYCVA-FDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             CSSCCCEEE-ECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCCCccceE-ECCCCCEEEEecCCCeEEEEecccccee
Confidence            122233444 7788887777888899999998876543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=1.4e-19  Score=166.30  Aligned_cols=226  Identities=8%  Similarity=0.035  Sum_probs=157.7

Q ss_pred             eeEEEEeeCCCcceEEEeccccc--------------cccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCC--
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSE--------------NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC--   67 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~--   67 (316)
                      .|++||+.+.+...++.......              ..+. .....|.+++|+|+| ++|++++. +.|++||+.++  
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~  141 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGK  141 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEECTTS-SEEEEEET-TEEEEEESSSCST
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcceeEECCCC-CEEEEEeC-CcEEEEECCCCCc
Confidence            89999998877655544321100              0000 000348899999999 78888876 99999999877  


Q ss_pred             -cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee
Q 021160           68 -HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS  146 (316)
Q Consensus        68 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (316)
                       +.               ..+ ..|...+..++|+|+|+.|+.+.++.|++||+.++                +..+...
T Consensus       142 ~~~---------------~~l-~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g----------------~~~~~~~  189 (741)
T 2ecf_A          142 AAV---------------RQL-THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG----------------RQMQLTA  189 (741)
T ss_dssp             TSC---------------CBC-CCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT----------------EEEECCC
T ss_pred             ceE---------------EEc-ccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC----------------CEEEecc
Confidence             41               111 45567899999999999998887889999999876                2222222


Q ss_pred             CCcCC--------------ceeeeEEEecCCCcEEEEeccCC---------------------------------eEEEE
Q 021160          147 GHRNS--------------QTVKGVNFFGPNDEYVMSGSDCG---------------------------------HLFIW  179 (316)
Q Consensus       147 ~~~~~--------------~~i~~~~~~~~~~~~l~~~~~dg---------------------------------~v~~w  179 (316)
                      .+...              ..+.+++| +|+|++|++++.|+                                 .|++|
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~-SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWW-APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEE-CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEE-CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            22110              01477898 99999999987765                                 88999


Q ss_pred             eccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeC-----CCcEEEecCCCCCCCCCC-CCccc---ceeeeecCCC
Q 021160          180 KKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGI-----EKTVKLWAPMPTDFPPLP-DNAEK---IMKANKQGRE  247 (316)
Q Consensus       180 d~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~-~~~~~---~~~~~~~~~~  247 (316)
                      |+.+ ++......  .|...+..++| |+++.|+.++.     +..|++||+.+++...+. .+...   ......|+++
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            9998 87655443  37778999999 99999886653     567999999987733322 22211   1123347888


Q ss_pred             CceeEEecCCCeEEEEEec
Q 021160          248 DHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       248 ~~~~~s~~~d~~~~~w~~~  266 (316)
                      ++++++++.++..++|.+.
T Consensus       348 g~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             SCEEEEECTTSSCEEEEEC
T ss_pred             CeEEEEecCCCccEEEEEc
Confidence            8888888999988888775

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=1.8e-19  Score=164.68  Aligned_cols=264  Identities=10%  Similarity=0.051  Sum_probs=167.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC-----CcccCCCCCCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-----CHWYSPISSDT   77 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~-----~~~~~~~~~~~   77 (316)
                      +.|++||+.+.+...+. .           |...+.+++|+|+| ++|+.+ .++.|++|++.+     ++.........
T Consensus       101 ~~i~~~d~~~~~~~~l~-~-----------~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~  166 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLF-D-----------TNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT  166 (706)
T ss_dssp             TEEEEEETTTTEEEEEE-C-----------CTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred             CEEEEEECCCCceEEcc-C-----------CcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence            68999999776543222 1           34568889999999 788874 689999999988     65321110000


Q ss_pred             -CceecccccccCCCcccEEEEEEccCCCeEEEec----------------------------------CCcEEEEEcCC
Q 021160           78 -PVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----------------------------------DELVYLFEKNM  122 (316)
Q Consensus        78 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------------------------------d~~i~iwd~~~  122 (316)
                       .+..-..  ....+...+.+++|+|+|++|+++.                                  +..|++||+.+
T Consensus       167 ~~~~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          167 ETLVYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             TTEEESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CCeEcccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence             0000000  0011122357899999999777742                                  35799999987


Q ss_pred             CCCCCCccCCccccccCCCcceee--CCcCCceeeeEEEecCCCcEEEEeccCC-----eEEEEeccCCeeEEEee-c-C
Q 021160          123 GLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCG-----HLFIWKKKGGKLVRLMV-G-D  193 (316)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~~-~-~  193 (316)
                      +                +......  .+.  ..+.+++| +|+|++|++++.++     .|++||+.+++....+. . +
T Consensus       245 ~----------------~~~~~~~~~~~~--~~~~~~~~-spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~  305 (706)
T 2z3z_A          245 G----------------KTVYLQTGEPKE--KFLTNLSW-SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD  305 (706)
T ss_dssp             T----------------EEEECCCCSCTT--CEEEEEEE-CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred             C----------------ceEeeccCCCCc--eeEeeEEE-ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence            6                3222222  233  34899999 99999999987775     89999999983333332 2 2


Q ss_pred             cc---ceEEEEEcC--CCCeEEEEeCCCcEEEecCC--CCCCCCCCCCcccceeeeecCCCCceeE-EecCCC----eEE
Q 021160          194 RH---VVNQLEPHP--HIPMFATCGIEKTVKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHSRI-TLTPDV----IMH  261 (316)
Q Consensus       194 ~~---~v~~~~~~p--~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~----~~~  261 (316)
                      ..   .+..++|+|  +++++++++.|+.++||.+.  .+....+..+...+.....++++++.++ ++..++    .+.
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY  385 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence            22   246789999  99999999999999999765  3335556656555555445888877665 444444    566


Q ss_pred             EEEecccCcc-------ee-EEeeccccccccc----CCCCeEEEEeccCCC
Q 021160          262 VLRLQRRQTL-------AY-RERRYNAADFESD----EEEGETYLLGFSDSD  301 (316)
Q Consensus       262 ~w~~~~~~~~-------~~-~~~~~~~~~~~~~----~~~~~v~~~~~~~~~  301 (316)
                      .|++.++...       .. ..++|++..+...    ...+.+++++...+.
T Consensus       386 ~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          386 CIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            6665544211       11 2567777666533    223568888876553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=2.4e-19  Score=145.88  Aligned_cols=209  Identities=13%  Similarity=0.142  Sum_probs=145.1

Q ss_pred             ceeeEEEEeeC-CCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe--cCCcEEEEeCc--CCcccCCCCCC
Q 021160            2 VLFNMLFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIR--KCHWYSPISSD   76 (316)
Q Consensus         2 ~g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~--~~~~~~~~~~~   76 (316)
                      .+.|++||+.+ .+...+....          +...+.+++|+|++ ++|++++  .++...||.++  +++        
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~--------  121 (297)
T 2ojh_A           61 EGLLYRLSLAGDPSPEKVDTGF----------ATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT--------  121 (297)
T ss_dssp             TTEEEEEESSSCCSCEECCCTT----------CCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCC--------
T ss_pred             CCeEEEEeCCCCCCceEecccc----------ccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCc--------
Confidence            46799999987 6553332111          24678899999999 7888887  44556666554  332        


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCCeEE-E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                             ...+ .. ...+..++|+|+++.++ + ..++.+.+|+++...               .....+..+...  +
T Consensus       122 -------~~~~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~--~  175 (297)
T 2ojh_A          122 -------PRLM-TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---------------GVETRLTHGEGR--N  175 (297)
T ss_dssp             -------CEEC-CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---------------CCEEECCCSSSC--E
T ss_pred             -------eEEe-ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCC---------------CcceEcccCCCc--c
Confidence                   1111 22 22488899999999665 4 468999999865321               233445555544  8


Q ss_pred             eeEEEecCCCcEEEEec-cCCeEEEEecc-CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-----------CcEEEe
Q 021160          155 KGVNFFGPNDEYVMSGS-DCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-----------KTVKLW  221 (316)
Q Consensus       155 ~~~~~~~~~~~~l~~~~-~dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----------~~i~iw  221 (316)
                      .+++| +|++++++.++ .++.+++|++. .+..+..+..|...+..++|+|++++|++++.+           +.|++|
T Consensus       176 ~~~~~-s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          176 DGPDY-SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             EEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             ccceE-CCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            99999 99999887765 58899999986 566677787788889999999999998888765           569999


Q ss_pred             cCCCCCCCCCC---CCcccceeeeecCCCCceeEEecCC
Q 021160          222 APMPTDFPPLP---DNAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       222 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      |+.+++...+.   +|...+.... |++++..+++++.+
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~  292 (297)
T 2ojh_A          255 DMDGGNVETLFDLFGGQGTMNSPN-WSPDGDEFAYVRYF  292 (297)
T ss_dssp             ETTSCSCEEEEEEEESTTTSCSCC-BCTTSSEEEEEEEC
T ss_pred             ecCCCCceeeeccCCCCcccccce-ECCCCCEEEEEEec
Confidence            99887643322   4444554444 77888877766654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=3.5e-19  Score=162.83  Aligned_cols=259  Identities=11%  Similarity=0.054  Sum_probs=165.3

Q ss_pred             eEEEEeeCCCc--ceEEEecccc------ccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCC
Q 021160            5 NMLFDLRSDSA--TRLFYCSSFS------ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         5 v~vwd~~~~~~--~~~~~~~~~~------~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~   76 (316)
                      | +||+.+.+.  ..++......      +.. ...+...|.+++|+|++ .++++  .++.|++||+.+++..      
T Consensus        46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~spd~-~~~~~--~~~~i~~~d~~~~~~~------  114 (706)
T 2z3z_A           46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKF-QTTDAFPSFRTLDAGRG-LVVLF--TQGGLVGFDMLARKVT------  114 (706)
T ss_dssp             E-EEEC-------CEEEEHHHHHTTC------------CCCEEEEETTTT-EEEEE--ETTEEEEEETTTTEEE------
T ss_pred             E-EEECCCCcEeeEEeechhHhhhhccchhcc-ccccccCceeEEECCCC-eEEEE--ECCEEEEEECCCCceE------
Confidence            7 999998876  4444322110      000 00012469999999984 55544  3599999999887521      


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCC-----CCCCCCccCCccccccCCCcceeeCCcCC
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM-----GLGPSPLSLSPEDLQKREEPQVYSGHRNS  151 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (316)
                               .+ ..+...+.+++|+|+|+.|+.+.++.|++||+.+     +                +..+....+...
T Consensus       115 ---------~l-~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g----------------~~~~~~~~~~~~  168 (706)
T 2z3z_A          115 ---------YL-FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMS----------------RAIAVTIDGTET  168 (706)
T ss_dssp             ---------EE-ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCC----------------CCEESCSCCBTT
T ss_pred             ---------Ec-cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCC----------------CcEEeccCCCCC
Confidence                     11 2334567789999999988888899999999987     5                222222222111


Q ss_pred             ------------ceeeeEEEecCCCcEEEEec---------------------------------cCCeEEEEeccCCee
Q 021160          152 ------------QTVKGVNFFGPNDEYVMSGS---------------------------------DCGHLFIWKKKGGKL  186 (316)
Q Consensus       152 ------------~~i~~~~~~~~~~~~l~~~~---------------------------------~dg~v~~wd~~~~~~  186 (316)
                                  ..+.++.| +|+|++|++++                                 .+..|++||+.+++.
T Consensus       169 ~~~g~~~~~ee~~~~~~~~~-SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          169 LVYGQAVHQREFGIEKGTFW-SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             EEESSCCGGGCTTCCCSEEE-CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             eEcccchhhhhcCCCceEEE-CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence                        11478898 99999999987                                 446799999998886


Q ss_pred             EEEee--cCccceEEEEEcCCCCeEEEEeCCC-----cEEEecCCCC-CCCCCCCC--ccc--ceeeeecCC--CCceeE
Q 021160          187 VRLMV--GDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPT-DFPPLPDN--AEK--IMKANKQGR--EDHSRI  252 (316)
Q Consensus       187 ~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~-----~i~iwd~~~~-~~~~~~~~--~~~--~~~~~~~~~--~~~~~~  252 (316)
                      .....  .|...+.+++|+|+++.|++++.++     .|++||+.++ ....+...  ...  ......+++  ++.+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~  327 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW  327 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence            54442  4667899999999999998887775     8999999887 33322211  111  112234777  888999


Q ss_pred             EecCCCeEEEEEec-ccCcc---------ee--EEeecccccccc-cCCCC----eEEEEeccCCC
Q 021160          253 TLTPDVIMHVLRLQ-RRQTL---------AY--RERRYNAADFES-DEEEG----ETYLLGFSDSD  301 (316)
Q Consensus       253 s~~~d~~~~~w~~~-~~~~~---------~~--~~~~~~~~~~~~-~~~~~----~v~~~~~~~~~  301 (316)
                      ++..++.+++|.+. .+...         ..  ..++|++..+.. ..+++    .|+.++...+.
T Consensus       328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99999999999876 22111         11  245666655532 23333    67888776553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=3.6e-18  Score=156.50  Aligned_cols=223  Identities=5%  Similarity=-0.056  Sum_probs=149.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.|.+||+.+.+.. .+...        .+|...+..++|+|+| +.|+.++. +.|++||+.+++....         
T Consensus        90 ~~~i~~~d~~~~~~~-~l~~~--------~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~---------  149 (723)
T 1xfd_A           90 TGYYVLSKIPHGDPQ-SLDPP--------EVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRV---------  149 (723)
T ss_dssp             CSEEEEEESSSCCCE-ECCCT--------TCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEE---------
T ss_pred             eeeEEEEECCCCceE-eccCC--------ccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEE---------
Confidence            378899999887652 22111        1355568899999999 78888776 7999999988762211         


Q ss_pred             cccccccCCCcc------------------cEEEEEEccCCCeEEEe-cC-C----------------------------
Q 021160           82 FCPRHLIGKNNI------------------HITGLAYSNTSELLISY-ND-E----------------------------  113 (316)
Q Consensus        82 ~~~~~~~~~~~~------------------~i~~~~~~~~~~~l~s~-~d-~----------------------------  113 (316)
                           . ..+..                  .+.+++|+|+|+.|+.+ .| .                            
T Consensus       150 -----~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  223 (723)
T 1xfd_A          150 -----V-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS  223 (723)
T ss_dssp             -----E-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred             -----e-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence                 1 11111                  23789999999977774 33 2                            


Q ss_pred             -----cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc----CCceeeeEEEecCCCcEEEEecc----CCeEEEEe
Q 021160          114 -----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWK  180 (316)
Q Consensus       114 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~----dg~v~~wd  180 (316)
                           .|++||+.++                +....+..+.    ....+.+++| +|+|+++++.+.    +..|++||
T Consensus       224 ~~~~~~l~~~d~~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          224 ENPSISLHVIGLNGP----------------THDLEMMPPDDPRMREYYITMVKW-ATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             CCCEEEEEEEESSSS----------------CCCEECCCCCCGGGSSEEEEEEEE-SSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CCCeeEEEEEECCCC----------------ceeEEeeCCccCCCccceeEEEEE-eCCCeEEEEEEcCCCCeEEEEEEe
Confidence                 5777777665                3334444331    1134889999 999998877653    35799999


Q ss_pred             ccCCeeEEEeec-Cccce----EEEEEcCCCCeEEE--EeCCC------cEEEec-CCCCC---CCCCCCCcccceeeee
Q 021160          181 KKGGKLVRLMVG-DRHVV----NQLEPHPHIPMFAT--CGIEK------TVKLWA-PMPTD---FPPLPDNAEKIMKANK  243 (316)
Q Consensus       181 ~~~~~~~~~~~~-~~~~v----~~~~~~p~~~~l~s--~~~d~------~i~iwd-~~~~~---~~~~~~~~~~~~~~~~  243 (316)
                      +.+++....+.. +...+    ..++|+|+|+.|+.  +..++      .|.+|| ..++.   ...+......+.....
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            999987766643 33333    37899999998664  44666      577788 45555   5555543344444445


Q ss_pred             cCCCCceeEEecCC---CeEEEEEecc
Q 021160          244 QGREDHSRITLTPD---VIMHVLRLQR  267 (316)
Q Consensus       244 ~~~~~~~~~s~~~d---~~~~~w~~~~  267 (316)
                      |+++++.++..+.+   +.+++|++..
T Consensus       367 ~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          367 YDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             EETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             EcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence            88988887655444   7899999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=4.8e-19  Score=162.28  Aligned_cols=234  Identities=11%  Similarity=0.104  Sum_probs=149.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec---------CCcEEEEeCcCCcccCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSP   72 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~---------dg~v~~wd~~~~~~~~~   72 (316)
                      +|.|++||+.+.+...++..+...        ...+.+++|+|+| ++|+.++.         ++.|++||+.+++... 
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-  104 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMK--------SVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR-  104 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHH--------TTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-
T ss_pred             CCCEEEEEcCCCcEEEEEcccccc--------ccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCcccc-
Confidence            578999999988765544322110        0138899999999 78888765         7899999999887310 


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC-
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-  151 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (316)
                                 ...+    ...+..++|+|+|+.|+.+.++.|++|++.++...   .+.    ........+.++... 
T Consensus       105 -----------~~~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~---~l~----~~~~~~~v~~g~~~~v  162 (719)
T 1z68_A          105 -----------GNEL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF---QIT----FNGRENKIFNGIPDWV  162 (719)
T ss_dssp             -----------SSCC----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE---ECC----CCCBTTTEEESSCCHH
T ss_pred             -----------ceec----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE---EEe----cCCCcCCeEcccccce
Confidence                       0111    13577899999999999888999999999876200   000    000001112222211 


Q ss_pred             ------ceeeeEEEecCCCcEEEEeccCC----------------------------------eEEEEeccCCeeE---E
Q 021160          152 ------QTVKGVNFFGPNDEYVMSGSDCG----------------------------------HLFIWKKKGGKLV---R  188 (316)
Q Consensus       152 ------~~i~~~~~~~~~~~~l~~~~~dg----------------------------------~v~~wd~~~~~~~---~  188 (316)
                            ....+++| +|||++|++++.|.                                  .|++||+.+++..   .
T Consensus       163 ~~ee~~~~~~~~~w-SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~  241 (719)
T 1z68_A          163 YEEEMLATKYALWW-SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE  241 (719)
T ss_dssp             HHHHTTCSSCCEEE-CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred             eeeecccCcccEEE-CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence                  00257898 99999999987652                                  7889999887642   1


Q ss_pred             -----EeecCccceEEEEEcCCCCeEEEEeCC----CcEEEec----CCCCCCCCCC-----CCcccce----eeeecCC
Q 021160          189 -----LMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWA----PMPTDFPPLP-----DNAEKIM----KANKQGR  246 (316)
Q Consensus       189 -----~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~-----~~~~~~~----~~~~~~~  246 (316)
                           .+.+|...+..++|+|+++++++....    ..|.+||    +.+++...+.     .+...+.    ....|++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  321 (719)
T 1z68_A          242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY  321 (719)
T ss_dssp             CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred             ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence                 123577889999999998777664422    2488899    7776644333     3333332    1334788


Q ss_pred             CCceeE--EecCCCe--EEEEEeccc
Q 021160          247 EDHSRI--TLTPDVI--MHVLRLQRR  268 (316)
Q Consensus       247 ~~~~~~--s~~~d~~--~~~w~~~~~  268 (316)
                      +++.++  +...++.  +.+|++..+
T Consensus       322 dg~~l~~~~~~~~g~~~l~~~~~~~~  347 (719)
T 1z68_A          322 DAISYYKIFSDKDGYKHIHYIKDTVE  347 (719)
T ss_dssp             TSSCEEEEEECTTSCEEEEEESSCST
T ss_pred             CCCeEEEEEEccCCceEEEEEECCCC
Confidence            887544  3445554  555555443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=2.4e-17  Score=137.82  Aligned_cols=233  Identities=9%  Similarity=0.024  Sum_probs=162.6

Q ss_pred             ccceEEEEECCCCCcEEEEEec-------CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGS-------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-  105 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~-------dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  105 (316)
                      ...+..++|+|++ +++++++.       ++.|.+||..+++..              ..+ . ....+..++|+|+|+ 
T Consensus        40 ~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~--------------~~~-~-~~~~~~~~~~s~dg~~  102 (353)
T 3vgz_A           40 GKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVT--------------QAI-H-NDLKPFGATINNTTQT  102 (353)
T ss_dssp             ESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEE--------------EEE-E-ESSCCCSEEEETTTTE
T ss_pred             ccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEE--------------EEE-e-cCCCcceEEECCCCCE
Confidence            4468899999998 66666653       578999999988632              111 1 123366789999998 


Q ss_pred             eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC-------ceeeeEEEecCCCcEEEEec--cCCe
Q 021160          106 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDEYVMSGS--DCGH  175 (316)
Q Consensus       106 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~--~dg~  175 (316)
                      ++++. .++.|.+||..++                +....+..+...       ..+.+++| +|+++++++++  .++.
T Consensus       103 l~v~~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTG----------------EVKGRLVLDDRKRTEEVRPLQPRELVA-DDATNTVYISGIGKESV  165 (353)
T ss_dssp             EEEEETTTTEEEEEETTTC----------------CEEEEEESCCCCCCSSCCCCEEEEEEE-ETTTTEEEEEEESSSCE
T ss_pred             EEEEecCCCEEEEEeCCCC----------------eeEEEEecCCCccccccCCCCCceEEE-CCCCCEEEEEecCCCce
Confidence            44554 5799999999887                455555543321       12678998 99999877766  4889


Q ss_pred             EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC-CCCCC----CcccceeeeecCCCCce
Q 021160          176 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD----NAEKIMKANKQGREDHS  250 (316)
Q Consensus       176 v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~  250 (316)
                      |.+||+.+++.+..+..+...+..++|+|+++.+++++.++.|.+||+.+++. ..+..    +...+..+. ++++++.
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~~  244 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINIS-LDTARQR  244 (353)
T ss_dssp             EEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE-EETTTTE
T ss_pred             EEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEE-ECCCCCE
Confidence            99999999999888875666688999999999999999999999999988762 22211    222222333 6777765


Q ss_pred             e-EEecCCCeEEEEEecccCcceeE--------Eeecccccc-cccCCCCeEEEEeccCCC
Q 021160          251 R-ITLTPDVIMHVLRLQRRQTLAYR--------ERRYNAADF-ESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       251 ~-~s~~~d~~~~~w~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~v~~~~~~~~~  301 (316)
                      + ++...++.+.+||+.+++.....        .+.+++..+ .+...++.|.++|...+.
T Consensus       245 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          245 AFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            4 45555699999999776443222        455555533 344467778888876554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.80  E-value=1.3e-18  Score=165.52  Aligned_cols=193  Identities=8%  Similarity=0.002  Sum_probs=152.8

Q ss_pred             CccceEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcc-cEEEEEEccCCCeEEE-
Q 021160           33 NSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELLIS-  109 (316)
Q Consensus        33 h~~~v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s-  109 (316)
                      |...+.+++|+ |++ +++++++ ++.+.+|++..++.               ..+ ..|.. .+..++|+ +|+.++. 
T Consensus       294 ~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYV---------------LKV-PEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             ECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBE---------------EEC-SCCSCEEEEEECSS-SEEEEEEE
T ss_pred             cccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCce---------------EEc-cCCCcceEEeeeEc-CCCeEEEE
Confidence            45578999999 999 7888777 78999999987642               112 44555 88999999 9987766 


Q ss_pred             ecCCcEE-EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          110 YNDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       110 ~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                      +.+..+. +|++..+                . ...+.++...  +..++| +|+|++|++++.++.|++||+.+++...
T Consensus       355 s~~~~l~~~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~  414 (1045)
T 1k32_A          355 TREGDFLGIYDYRTG----------------K-AEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTV  414 (1045)
T ss_dssp             ETTEEEEEEEETTTC----------------C-EEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCCceEEEEECCCC----------------C-ceEecCCccc--eeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEE
Confidence            4566788 8898765                2 2334455544  899999 9999999999999999999999999888


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCC----------cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          189 LMVGDRHVVNQLEPHPHIPMFATCGIEK----------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      .+.+|...+.+++|+|++++|++++.++          .|++||+.+++...+..+...+.... |+++++.++..+.++
T Consensus       415 ~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~-~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          415 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA-FDADSKNLYYLSYRS  493 (1045)
T ss_dssp             EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEE-ECTTSCEEEEEESCC
T ss_pred             eccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCce-EcCCCCEEEEEeccc
Confidence            7778988999999999999998887654          89999999887666666666655544 889999988888877


Q ss_pred             eEEEEEe
Q 021160          259 IMHVLRL  265 (316)
Q Consensus       259 ~~~~w~~  265 (316)
                      ...+|+.
T Consensus       494 ~~~~~~~  500 (1045)
T 1k32_A          494 LDPSPDR  500 (1045)
T ss_dssp             CCCEECS
T ss_pred             CCcCcch
Confidence            6666653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=1.7e-17  Score=138.08  Aligned_cols=221  Identities=11%  Similarity=0.066  Sum_probs=141.3

Q ss_pred             eeeEEEEee--CCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            3 LFNMLFDLR--SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         3 g~v~vwd~~--~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      |.|++|++.  +.+........          ....+..++|+|++ +++++++ .++.|.+||+..+...      .  
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~------~--  120 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESA----------LPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPV------G--  120 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEE----------CSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEE------E--
T ss_pred             CeEEEEEecCCCCceeeccccc----------cCCCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCccc------c--
Confidence            789999997  33332222221          12267899999999 6665554 5889999999532200      0  


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCC-CCCCCCccCCccccccCCCcc----eeeCCcCCc
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQ----VYSGHRNSQ  152 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  152 (316)
                         ....+ .. ...+.+++|+|+++++++ + .++.|.+||+.. +                +...    .+..+.. .
T Consensus       121 ---~~~~~-~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~----------------~~~~~~~~~~~~~~~-~  178 (343)
T 1ri6_A          121 ---VVDVV-EG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG----------------HLVAQDPAEVTTVEG-A  178 (343)
T ss_dssp             ---EEEEE-CC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS----------------CEEEEEEEEEECSTT-C
T ss_pred             ---ccccc-cC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC----------------ceeeecccccccCCC-C
Confidence               11111 22 235788999999985555 4 699999999976 4                2211    2222221 2


Q ss_pred             eeeeEEEecCCCcEEEEe-ccCCeEEEEeccC--Cee--EEEee---c-C--ccceEEEEEcCCCCeEE-EEeCCCcEEE
Q 021160          153 TVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKG--GKL--VRLMV---G-D--RHVVNQLEPHPHIPMFA-TCGIEKTVKL  220 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~-~~dg~v~~wd~~~--~~~--~~~~~---~-~--~~~v~~~~~~p~~~~l~-s~~~d~~i~i  220 (316)
                      .+..++| +|++++++++ ..++.+.+|++..  ++.  ...+.   . +  ...+..++|+|++++|+ ++..++.|++
T Consensus       179 ~~~~~~~-~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          179 GPRHMVF-HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             CEEEEEE-CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CcceEEE-CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence            3788999 9999977554 5799999999953  433  22222   1 1  23566899999998866 5557899999


Q ss_pred             ecCC--CCC---CCCCCCCcccceeeeecCCCCceeEEec-CCCeEEEEEecc
Q 021160          221 WAPM--PTD---FPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMHVLRLQR  267 (316)
Q Consensus       221 wd~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~w~~~~  267 (316)
                      |++.  ++.   +..+..+.. +..+. +++++++++.++ .++.+.+|++..
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~-~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQ-PRGFN-VDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSS-CCCEE-ECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEcCCCCceEEeeeecCCCc-cceEE-ECCCCCEEEEecCCCCeEEEEEEcC
Confidence            9998  332   222222222 33344 778888776666 689999997763

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=2e-17  Score=157.44  Aligned_cols=247  Identities=7%  Similarity=0.028  Sum_probs=175.6

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCcc-ceEEEEECCCCCcEEEEEecCCcEE-EEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSI-RLNAIVIDPRNPNYFAVGGSDEYAR-VYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~~g~~dg~v~-~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|.+|++.......   .         ..|.. .+..++|+ ++ ..|+.++.+..+. +|++.+++            
T Consensus       317 ~~i~~~~~~~~~~~~---~---------~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~------------  370 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLK---V---------PEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGK------------  370 (1045)
T ss_dssp             TEEEEECTTSSBEEE---C---------SCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCC------------
T ss_pred             CEEEEEcCCCCceEE---c---------cCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCC------------
Confidence            567777776543211   1         12555 79999999 88 7888888888888 88988664            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         ...+ ..|...+..++|+|+|+.|++ +.++.|++||+.++                +....+.+|...  +.+++|
T Consensus       371 ---~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg----------------~~~~~~~~~~~~--v~~~~~  428 (1045)
T 1k32_A          371 ---AEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----------------KPTVIERSREAM--ITDFTI  428 (1045)
T ss_dssp             ---EEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----------------CEEEEEECSSSC--CCCEEE
T ss_pred             ---ceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC----------------ceEEeccCCCCC--ccceEE
Confidence               2223 266778999999999998877 47899999999887                555555577755  899999


Q ss_pred             ecCCCcEEEEeccCC----------eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC-
Q 021160          160 FGPNDEYVMSGSDCG----------HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-  228 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg----------~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~-  228 (316)
                       +|+|++|++++.++          .|++||+.+++ ...+..|...+..++|+|++++|+.++.++..++|+...... 
T Consensus       429 -SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~  506 (1045)
T 1k32_A          429 -SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  506 (1045)
T ss_dssp             -CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             -CCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccc
Confidence             99999998887654          89999999888 667777888899999999999999998877777776432110 


Q ss_pred             -------------------------------------------CCCCCCcccceeeeecCCCCceeEE------------
Q 021160          229 -------------------------------------------PPLPDNAEKIMKANKQGREDHSRIT------------  253 (316)
Q Consensus       229 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~s------------  253 (316)
                                                                 ..+..+...+.. ..+++++..+++            
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~-~~~s~dg~~~~~~~~~g~~~~~~~  585 (1045)
T 1k32_A          507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM-IIPLESSILIYSVPVHGEFAAYYQ  585 (1045)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE-EEECSSEEEEEECCCCCSHHHHHH
T ss_pred             cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhh-eEEcCCCeEEEEecccCccccccc
Confidence                                                       111112222222 235667766664            


Q ss_pred             -ecCCCeEEEEEecccCccee------EEeecccccccccCCCCeEEEEeccCCC
Q 021160          254 -LTPDVIMHVLRLQRRQTLAY------RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       254 -~~~d~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                       ......+.+||+.+++....      ..++|++..+....++ .+.+|+...+.
T Consensus       586 ~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          586 GAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             ccCCCceEEEEECCCCcEEEeecCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence             22345777888777654322      2678888887766544 69999997765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=9e-17  Score=133.27  Aligned_cols=226  Identities=6%  Similarity=0.013  Sum_probs=152.4

Q ss_pred             EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEE
Q 021160           40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYL  117 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~i  117 (316)
                      ..|.+++...+++++.++.|.+||+.+++.              ...+ ..+.... .++|+|+|++++ ++ .++.|.+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~--------------~~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~   66 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI--------------LNQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQ   66 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE--------------EEEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce--------------eeeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence            456666646788888999999999998873              2222 2234445 999999998444 44 4889999


Q ss_pred             EEcCCCCCCCCccCCccccccCCC-cceeeCCcCCceeeeEEEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecC
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~  193 (316)
                      ||+.++                +. ...+..+...  ..+++| +|++++++++..++   .|++||+.+++.+..+..+
T Consensus        67 ~d~~~~----------------~~~~~~~~~~~~~--~~~~~~-s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  127 (331)
T 3u4y_A           67 IETQLE----------------PPKVVAIQEGQSS--MADVDI-TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP  127 (331)
T ss_dssp             EECSSS----------------SCEEEEEEECSSC--CCCEEE-CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred             EECCCC----------------ceeEEecccCCCC--ccceEE-CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC
Confidence            999887                44 5555555443  444898 99999999665553   8999999999988887654


Q ss_pred             ccceEEEEEcCCCCeEE-EEeCCCc-EEEecCCCCCCC-----CCCCCcccceeeeecCCCCc-eeEEecCCCeEEEEEe
Q 021160          194 RHVVNQLEPHPHIPMFA-TCGIEKT-VKLWAPMPTDFP-----PLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRL  265 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~-s~~~d~~-i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~  265 (316)
                       ..+..++|+|++++++ +...++. |.+|++......     ...........+ .++++++ ++++...++.+.+|++
T Consensus       128 -~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          128 -YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI-TFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             -TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE-EECTTSSEEEEEETTTTEEEEEEC
T ss_pred             -CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce-EECCCCCEEEEEeCCCCeEEEEEC
Confidence             4568999999998654 5456688 999998753311     111112223333 4778887 5566677899999999


Q ss_pred             cccCc---cee---------EEeeccccccc-ccCCCCeEEEEeccCCCC
Q 021160          266 QRRQT---LAY---------RERRYNAADFE-SDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       266 ~~~~~---~~~---------~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~  302 (316)
                      .+++.   ...         ..+.|++..+. ....++.|++++...+..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          206 QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            87655   221         14566666443 344566688888766543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=1.2e-16  Score=133.59  Aligned_cols=230  Identities=10%  Similarity=0.074  Sum_probs=145.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcC-CcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~-~~~~~~~~~~~~~   79 (316)
                      .+.|++||+.+.+...+....         .|...+..++|+|++ ++|++++ .++.|.+|++.. +...       .+
T Consensus        62 ~~~v~~~~~~~g~~~~~~~~~---------~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~-------~~  124 (347)
T 3hfq_A           62 EGGIAAWQIDGQTAHKLNTVV---------APGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALT-------LT  124 (347)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE---------EESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEE-------EE
T ss_pred             CceEEEEEecCCcEEEeeeee---------cCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCee-------ec
Confidence            478999999765543322211         134567899999999 7777766 789999999963 2210       01


Q ss_pred             eecccccc---cCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcC-CCCCCCCccCCccccccCCCc--ceeeCCcCCc
Q 021160           80 DTFCPRHL---IGKNNIHITGLAYSNTSELLISY-NDELVYLFEKN-MGLGPSPLSLSPEDLQKREEP--QVYSGHRNSQ  152 (316)
Q Consensus        80 ~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  152 (316)
                      ..+.....   ...+...+.+++|+|+|+++++. .++.|.+|++. .+                ...  ..+..... .
T Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g----------------~~~~~~~~~~~~g-~  187 (347)
T 3hfq_A          125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG----------------QLSEQSVLTMEAG-F  187 (347)
T ss_dssp             EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS----------------CEEEEEEEECCTT-C
T ss_pred             ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC----------------cEEEeeeEEcCCC-C
Confidence            10000000   01123458899999999966665 58899999997 33                111  11222221 2


Q ss_pred             eeeeEEEecCCCcEEEE-eccCCeEEEEeccC--Cee--EEEeecCc------cceEEEEEcCCCCeE-EEEeCCCcEEE
Q 021160          153 TVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKG--GKL--VRLMVGDR------HVVNQLEPHPHIPMF-ATCGIEKTVKL  220 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~-~~~dg~v~~wd~~~--~~~--~~~~~~~~------~~v~~~~~~p~~~~l-~s~~~d~~i~i  220 (316)
                      .+..++| +|+|+++++ ...++.+.+|++..  ++.  +..+....      ..+..++|+|++++| ++...++.|.+
T Consensus       188 ~p~~~~~-spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          188 GPRHLVF-SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             CEEEEEE-CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CCceEEE-CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence            3778999 999996655 56789999999874  553  22333222      358889999999986 56667899999


Q ss_pred             ecCCCC-C---CCCCCCCcccceeeeecCCCCceeEEec-CCCeEEEEEecc
Q 021160          221 WAPMPT-D---FPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMHVLRLQR  267 (316)
Q Consensus       221 wd~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~w~~~~  267 (316)
                      |++... .   +..+..+...+..++ +++++++++.+. .++.+.+|++..
T Consensus       267 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          267 FAVTADGHLTLIQQISTEGDFPRDFD-LDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEECGGGCEEEEEEEECSSSCCCEEE-ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEECCCCcEEEeEEEecCCCCcCeEE-ECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            998632 2   222222333344444 788888766655 459999997653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=5.9e-18  Score=151.36  Aligned_cols=211  Identities=9%  Similarity=-0.012  Sum_probs=148.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCc-cceEEEEECCCCCcEEEEEec---CCcEEEEeCcC--CcccCCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNS-IRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISS   75 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~--~~~~~~~~~   75 (316)
                      +|.++||++...+..++.            .|. ..+.+++|+|+  +++++++.   +...++|.+..  ..       
T Consensus        43 ~g~~~lw~~~~g~~~~lt------------~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g-------  101 (582)
T 3o4h_A           43 EGSVNAYLYDGGETVKLN------------REPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPG-------  101 (582)
T ss_dssp             TTEEEEEEEETTEEEECC------------SSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTT-------
T ss_pred             CCceeEEEEcCCCcEeee------------cccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCC-------
Confidence            578999998654432221            133 57899999997  57776664   55667776654  21       


Q ss_pred             CCCceecccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           76 DTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                             ....+...  ......+|+|+|+  .++++.++.+.+||+.++                +..+ +..+.    
T Consensus       102 -------~~~~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g----------------~~~~-l~~~~----  151 (582)
T 3o4h_A          102 -------EEQRLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGG----------------GLRE-LARLP----  151 (582)
T ss_dssp             -------CCEECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT----------------EEEE-EEEES----
T ss_pred             -------ccccccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCC----------------cEEE-eecCC----
Confidence                   00111111  1233568888885  455566666679999876                3333 33222    


Q ss_pred             eeeEEEecCCCcEEEEeccC----CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC--cEEEecCCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDC----GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TVKLWAPMPTD  227 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~d----g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~--~i~iwd~~~~~  227 (316)
                      ..+++| +|+|++|++++.+    +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++  .|++||+.+++
T Consensus       152 ~~~~~~-spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          152 GFGFVS-DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             SCEEEE-EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             CceEEE-CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence            167888 9999999988877    78999999988854 6677888899999999999999888888  89999999887


Q ss_pred             CCCCCCCcccceeee-------ecCCCCceeEEecCCCeEEEEEe
Q 021160          228 FPPLPDNAEKIMKAN-------KQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       228 ~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ...+..+...+....       .|++++.++++.+.++.+++|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          230 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            445555554443322       17888888899999999999998

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=1.4e-17  Score=148.84  Aligned_cols=222  Identities=10%  Similarity=0.002  Sum_probs=153.2

Q ss_pred             ccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec-
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  111 (316)
                      ..+|.+++|+|+| +.||.++. ||+++||++.+++               ...+...+...+..++|+|+ ++++++. 
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~---------------~~~lt~~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGE---------------TVKLNREPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTE---------------EEECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCC---------------cEeeecccccccccccCCCC-eEEEEecc
Confidence            4579999999999 78888776 9999999987664               22232333367899999999 7666542 


Q ss_pred             ---CCcEEEEEcCC--CCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc--EEEEeccCCeEEEEeccCC
Q 021160          112 ---DELVYLFEKNM--GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       112 ---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~dg~v~~wd~~~~  184 (316)
                         +....+|.+..  ..               .. ..+.... .  +...+| +|+++  .+++++.++ +.+||+.++
T Consensus        84 ~~g~~~~~l~~~~~~~~g---------------~~-~~l~~~~-~--~~~~~~-s~dg~~~~~~s~~~~~-~~l~d~~~g  142 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPG---------------EE-QRLEAVK-P--MRILSG-VDTGEAVVFTGATEDR-VALYALDGG  142 (582)
T ss_dssp             STTSCCEEEEEEETTSTT---------------CC-EECTTSC-S--BEEEEE-EECSSCEEEEEECSSC-EEEEEEETT
T ss_pred             CCCCcceEEEEEeccCCC---------------cc-ccccCCC-C--ceeeee-CCCCCeEEEEecCCCC-ceEEEccCC
Confidence               45566665543  20               11 1222222 1  334566 66665  444455444 559999998


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCC----CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCC--
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV--  258 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--  258 (316)
                      +.......+.   .+++|+|+|+.|++++.+    +.|++||+.+++...+..+...+.... |++|++.+++...++  
T Consensus       143 ~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~-~SpDG~~l~~~~~~~~~  218 (582)
T 3o4h_A          143 GLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSAS-ISPGMKVTAGLETAREA  218 (582)
T ss_dssp             EEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEE-ECTTSCEEEEEECSSCE
T ss_pred             cEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccce-ECCCCCEEEEccCCCee
Confidence            8665554332   789999999999988777    789999999988777777776665555 899999999888888  


Q ss_pred             eEEEEEecccCcceeE---------E--------eecccccccccCCCCeEEEEec
Q 021160          259 IMHVLRLQRRQTLAYR---------E--------RRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       259 ~~~~w~~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      .|++||+.+++.....         .        ++|++..+.+...++++.+|.+
T Consensus       219 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          219 RLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            8999998776443111         2        6666655555666677777776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=1.6e-16  Score=132.80  Aligned_cols=235  Identities=7%  Similarity=0.042  Sum_probs=145.8

Q ss_pred             ccceEEEEECCCCCcEEEEEec--CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~--dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      ...+..++|+|++ ++++++..  ++.|.+|++.+++..            ....+ ..+...+..++|+|+|++|++ +
T Consensus        39 ~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~------------~~~~~-~~~~~~p~~~a~spdg~~l~~~~  104 (347)
T 3hfq_A           39 TQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAH------------KLNTV-VAPGTPPAYVAVDEARQLVYSAN  104 (347)
T ss_dssp             CSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEE------------EEEEE-EEESCCCSEEEEETTTTEEEEEE
T ss_pred             cCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEE------------Eeeee-ecCCCCCEEEEECCCCCEEEEEe
Confidence            3467789999999 64444432  689999999766521            11111 234556788999999996665 4


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-------CCceeeeEEEecCCCcEEEEeccCCeEEEEecc
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  182 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~  182 (316)
                       .++.|.+|++.....             ...+..+....       ....+.+++| +|+++++++...++.|++|++.
T Consensus       105 ~~~~~v~v~~~~~~g~-------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~-spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          105 YHKGTAEVMKIAADGA-------------LTLTDTVQHSGHGPRPEQDGSHIHYTDL-TPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             TTTTEEEEEEECTTSC-------------EEEEEEEECCCCCSSTTCSSCCEEEEEE-CTTSCEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEEeCCCCC-------------eeecceeecCCCCCCccccCCCceEEEE-CCCCcEEEEeCCCCEEEEEEEC
Confidence             589999999963200             01112221110       1123778999 9999977777778999999998


Q ss_pred             -CCeeEE--EeecC-ccceEEEEEcCCCCeEEE-EeCCCcEEEecCCC--CCCC------CCCCC---cccceeeeecCC
Q 021160          183 -GGKLVR--LMVGD-RHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMP--TDFP------PLPDN---AEKIMKANKQGR  246 (316)
Q Consensus       183 -~~~~~~--~~~~~-~~~v~~~~~~p~~~~l~s-~~~d~~i~iwd~~~--~~~~------~~~~~---~~~~~~~~~~~~  246 (316)
                       +++...  .+..+ ...+..++|+|++++++. ...++.|.+|++..  +++.      .....   ...+.. ..+++
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-i~~sp  249 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA-IRLSH  249 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE-EEECT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee-EEECC
Confidence             555332  22222 236788999999996554 56788999999874  3211      11110   012323 34788


Q ss_pred             CCcee-EEecCCCeEEEEEecccCc-------------ceeEEeeccccccccc-CCCCeEEEEec
Q 021160          247 EDHSR-ITLTPDVIMHVLRLQRRQT-------------LAYRERRYNAADFESD-EEEGETYLLGF  297 (316)
Q Consensus       247 ~~~~~-~s~~~d~~~~~w~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~v~~~~~  297 (316)
                      +++++ ++...++.+.+|++.....             +....++|++..+... .+++.+.+|+.
T Consensus       250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            88866 6677789999999863211             1112455666555443 34466777754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=4.4e-17  Score=135.93  Aligned_cols=225  Identities=8%  Similarity=0.036  Sum_probs=149.9

Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEE
Q 021160           39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVY  116 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~  116 (316)
                      .+++++++ .++++++.++.|.+||+.+++..              ..+..+....+..++|+|+++.+ ++. .++.|.
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~   68 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVY--------------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   68 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTTTEEE--------------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCCCcEE--------------EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence            45677877 89999999999999999988632              12211111246789999999844 454 589999


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcC----CceeeeEEEecCCCcEEEEeccC------------CeEEEEe
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPNDEYVMSGSDC------------GHLFIWK  180 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~d------------g~v~~wd  180 (316)
                      +||+.++                +....+.....    ...+..++| +|+|+++++++.+            +.|.+||
T Consensus        69 ~~d~~t~----------------~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d  131 (349)
T 1jmx_B           69 GIDLDTC----------------KNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS  131 (349)
T ss_dssp             EEETTTT----------------EEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             EEeCCCC----------------cEEEEEEcccccccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEE
Confidence            9999877                44444442211    122678898 9999999998865            8999999


Q ss_pred             ccCCee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCc---------------------
Q 021160          181 KKGGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA---------------------  235 (316)
Q Consensus       181 ~~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~---------------------  235 (316)
                      +.+++.   +..+.. ...+.+++|+|+++ ++.++  +.|++||+.+++ ...+....                     
T Consensus       132 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (349)
T 1jmx_B          132 TADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR  207 (349)
T ss_dssp             GGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred             CCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcc
Confidence            988543   334443 34688899999999 55554  349999998765 22221110                     


Q ss_pred             c---c-------------------------------------------ceeeeecCC-CCceeEEecCCCeEEEEEeccc
Q 021160          236 E---K-------------------------------------------IMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       236 ~---~-------------------------------------------~~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .   .                                           ......+++ ++++++.+  ++.+.+||+.++
T Consensus       208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred             eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence            0   0                                           001112346 77777666  889999998765


Q ss_pred             Cccee---------EEeecccccccccCCCCeEEEEeccCCC
Q 021160          269 QTLAY---------RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       269 ~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +....         ..+.+++..+.....++.|.+||...++
T Consensus       286 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          286 KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             eEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            43221         2466666666666667889999987654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=5.9e-17  Score=148.81  Aligned_cols=236  Identities=8%  Similarity=0.057  Sum_probs=149.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC---------CcEEEEeCcCCcccCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSP   72 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d---------g~v~~wd~~~~~~~~~   72 (316)
                      +|.|++||+.+.+...++..+...      .+......++|+|+| ++|+.++.+         +.+.+||+.++++.  
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--  105 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFD------EFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--  105 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTT------TCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--
T ss_pred             CCcEEEEECCCCceEEEEechhhh------hhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcEE--
Confidence            478999999988876555443222      122234568999999 788888765         56779999988632  


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC-
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-  151 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (316)
                                   .+ ..|...+..++|||||+.|+...++.|++|++.++...   .+..    .......+.++... 
T Consensus       106 -------------~l-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~---~lt~----~g~~~~~~~g~~~~v  164 (740)
T 4a5s_A          106 -------------TE-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY---RITW----TGKEDIIYNGITDWV  164 (740)
T ss_dssp             -------------CS-SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE---ECCS----CCBTTTEEESBCCHH
T ss_pred             -------------Ec-ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE---EEcC----CCCccceecCccccc
Confidence                         12 44567899999999999998888999999999876200   0000    00001112222210 


Q ss_pred             ------ceeeeEEEecCCCcEEEEeccCC------------------------------------eEEEEeccC---Ce-
Q 021160          152 ------QTVKGVNFFGPNDEYVMSGSDCG------------------------------------HLFIWKKKG---GK-  185 (316)
Q Consensus       152 ------~~i~~~~~~~~~~~~l~~~~~dg------------------------------------~v~~wd~~~---~~-  185 (316)
                            .....+.| +|||++|+..+.|.                                    .|++||+.+   ++ 
T Consensus       165 ~~ee~~~~~~~~~w-SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          165 YEEEVFSAYSALWW-SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHTSSSSBCEEE-CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             ccchhcCCCcceEE-CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                  01235788 99999999875321                                    588899988   73 


Q ss_pred             -eEEEee------cCccceEEEEEcCCCCeEEEEe----CCCcEEEecCCCCC-------CCCC--CCCcccce----ee
Q 021160          186 -LVRLMV------GDRHVVNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-------FPPL--PDNAEKIM----KA  241 (316)
Q Consensus       186 -~~~~~~------~~~~~v~~~~~~p~~~~l~s~~----~d~~i~iwd~~~~~-------~~~~--~~~~~~~~----~~  241 (316)
                       ....+.      +|...+..++|+|+++.++...    .+..|++||+.+++       ...+  ..+...+-    ..
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~  323 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence             223333      3777899999999999765543    23379999998775       2222  22332221    12


Q ss_pred             eecCCCCceeE-Eec-CC--CeEEEEEeccc
Q 021160          242 NKQGREDHSRI-TLT-PD--VIMHVLRLQRR  268 (316)
Q Consensus       242 ~~~~~~~~~~~-s~~-~d--~~~~~w~~~~~  268 (316)
                      ..|+++++.++ ..+ .+  ..|.+|++..+
T Consensus       324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             ceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            33788888765 554 34  45666666544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=1.9e-16  Score=131.32  Aligned_cols=218  Identities=6%  Similarity=0.015  Sum_probs=148.2

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcc-cEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELL-ISY-NDELVYLFEKNMGL  124 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~  124 (316)
                      .++++++.++.|.+||+.+++..              ..+..++.. .+..++|+|+++.+ +++ .++.|.+||+.++ 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-   66 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE--------------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC-
Confidence            57899999999999999988632              222122221 36789999999744 454 5789999999877 


Q ss_pred             CCCCccCCccccccCCCcceeeCCc-C--CceeeeEEEecCCCcEEEEec------------cCCeEEEEeccCCeeEEE
Q 021160          125 GPSPLSLSPEDLQKREEPQVYSGHR-N--SQTVKGVNFFGPNDEYVMSGS------------DCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~~l~~~~------------~dg~v~~wd~~~~~~~~~  189 (316)
                                     +....+.... .  ...+.+++| +|+++++++++            .++.|.+||+.+++.+..
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  130 (337)
T 1pby_B           67 ---------------ETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             ---------------CEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ---------------CeEeeEEcCCcccccccccceEE-CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence                           4544444221 0  012678898 99999998886            579999999999998877


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC-CCCCCc--cc-----------------------------
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNA--EK-----------------------------  237 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~--~~-----------------------------  237 (316)
                      +.. ...+..++|+|++++|+++  ++.|++||+.+++.. .+..+.  ..                             
T Consensus       131 ~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  207 (337)
T 1pby_B          131 FEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             EEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             EeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence            764 3467889999999988777  689999998865411 110000  00                             


Q ss_pred             ---------------c-------------------eeeeecCCCCceeEEecCCCeEEEEEecccCccee---------E
Q 021160          238 ---------------I-------------------MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------R  274 (316)
Q Consensus       238 ---------------~-------------------~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~---------~  274 (316)
                                     +                   .....+++++++++.+  ++.+.+||+.+++....         .
T Consensus       208 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~  285 (337)
T 1pby_B          208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSV  285 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred             ccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeE
Confidence                           0                   0012356667666666  68899999876533221         2


Q ss_pred             EeecccccccccCCCCeEEEEeccCCC
Q 021160          275 ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       275 ~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .+.|++..+.....++.|.+|+...++
T Consensus       286 ~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          286 NVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            456666656555667788888887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=6.2e-15  Score=123.80  Aligned_cols=254  Identities=7%  Similarity=-0.010  Sum_probs=152.1

Q ss_pred             eeeEEEEeeCC--CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC----CcEEEEeCcC--CcccCCCC
Q 021160            3 LFNMLFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD----EYARVYDIRK--CHWYSPIS   74 (316)
Q Consensus         3 g~v~vwd~~~~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d----g~v~~wd~~~--~~~~~~~~   74 (316)
                      +.|.+|++...  +.......           |...+..++|+|++ ++|++++.+    +.|.+|++..  +++.    
T Consensus        27 ~~i~~~~~d~~~g~~~~~~~~-----------~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~----   90 (361)
T 3scy_A           27 KGIYTFRFNEETGESLPLSDA-----------EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLH----   90 (361)
T ss_dssp             CEEEEEEEETTTCCEEEEEEE-----------ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEE----
T ss_pred             CCEEEEEEeCCCCCEEEeecc-----------cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEE----
Confidence            46888888643  33222222           13456789999999 788887765    8999999875  3311    


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee--eCC--
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGH--  148 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--  148 (316)
                              ..... ..+......+++  ++++|++ . .++.|.+|++.......            .....+  .+.  
T Consensus        91 --------~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~------------~~~~~~~~~g~~~  147 (361)
T 3scy_A           91 --------LLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALL------------PASDVIEFKGSGP  147 (361)
T ss_dssp             --------EEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC------------SCSEEEECCCCCS
T ss_pred             --------EeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc------------ccceeEEccCCCC
Confidence                    11111 223445667777  7775555 4 58999999997541000            000000  110  


Q ss_pred             ----cCCceeeeEEEecCCCcEEEEec-cCCeEEEEeccCCe-------eE-----EE-eecCccceEEEEEcCCCCeEE
Q 021160          149 ----RNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK-------LV-----RL-MVGDRHVVNQLEPHPHIPMFA  210 (316)
Q Consensus       149 ----~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~-------~~-----~~-~~~~~~~v~~~~~~p~~~~l~  210 (316)
                          .....+.+++| +|+++++++++ .++.|++|++....       +.     .. ...+...+..++|+|++++++
T Consensus       148 ~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  226 (361)
T 3scy_A          148 DKERQTMPHLHCVRI-TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY  226 (361)
T ss_dssp             CTTTCSSCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CccccCCCcceEEEE-CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence                00112578998 99999665554 58899999887533       21     11 122345678999999999876


Q ss_pred             EEe-CCCcEEEecCCCCCC------CCCCCCcccceeeeecCCCCceeEEec-C-CCeEEEEEec--ccCc---------
Q 021160          211 TCG-IEKTVKLWAPMPTDF------PPLPDNAEKIMKANKQGREDHSRITLT-P-DVIMHVLRLQ--RRQT---------  270 (316)
Q Consensus       211 s~~-~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~-~-d~~~~~w~~~--~~~~---------  270 (316)
                      .++ .++.|.+|++.++.+      .....+......+ .+++++++++... . ++.+.+|++.  ++..         
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i-~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g  305 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI-HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG  305 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE-EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE-EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC
Confidence            666 689999999986542      1122222223333 4888888775544 4 5899999996  2221         


Q ss_pred             --ceeEEeeccccccccc-CCCCeEEEEec
Q 021160          271 --LAYRERRYNAADFESD-EEEGETYLLGF  297 (316)
Q Consensus       271 --~~~~~~~~~~~~~~~~-~~~~~v~~~~~  297 (316)
                        +....++|++..+... ..++.+.+|.+
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          306 IHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             SCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence              1112466666655544 35566777544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=1.2e-16  Score=146.49  Aligned_cols=225  Identities=5%  Similarity=-0.049  Sum_probs=142.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ++.|++||+.+.+.......            ...+..++|+|+| +.|+.+. ++.|++|++.+++.........    
T Consensus        89 ~~~i~~~d~~~g~~~~~~~l------------~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~----  150 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRGNEL------------PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGR----  150 (719)
T ss_dssp             EEEEEEEETTTTEECCSSCC------------CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCB----
T ss_pred             ceEEEEEECCCCccccceec------------CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCC----
Confidence            47899999987654110111            2357889999999 7888775 7899999998876321100000    


Q ss_pred             cccccccCCCccc---------EEEEEEccCCCeEEEe-cC-C---------------------------------cEEE
Q 021160           82 FCPRHLIGKNNIH---------ITGLAYSNTSELLISY-ND-E---------------------------------LVYL  117 (316)
Q Consensus        82 ~~~~~~~~~~~~~---------i~~~~~~~~~~~l~s~-~d-~---------------------------------~i~i  117 (316)
                        ...+..++...         ..+++|+|||+.|+++ .| +                                 .|++
T Consensus       151 --~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          151 --ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             --TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             --cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence              00011122221         2489999999988774 33 2                                 6778


Q ss_pred             EEcCCCCCCCCccCCccccccCCCc--------ceeeCCcCCceeeeEEEecCCCcEEEEeccC----CeEEEEe----c
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEP--------QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIWK----K  181 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~~wd----~  181 (316)
                      ||+.++                +..        ..+.++...  +.+++| +|+++++++....    ..|++||    +
T Consensus       229 ~d~~~~----------------~~~~~~~~~~~~~~~~~~~~--~~~~~~-SpD~~~~~~~~~~~~~~~~l~~~d~~~~~  289 (719)
T 1z68_A          229 IDTTYP----------------AYVGPQEVPVPAMIASSDYY--FSWLTW-VTDERVCLQWLKRVQNVSVLSICDFREDW  289 (719)
T ss_dssp             EESSCH----------------HHHCCEECCCCHHHHTSCEE--EEEEEE-SSSSEEEEEEEESSTTEEEEEEEEECSSS
T ss_pred             EECCCC----------------CccceeEccCCccCCCCcce--EEEeEE-eCCCeEEEEEeccccCeEEEEEEcccCCC
Confidence            888765                221        223345533  899999 9998877774432    3488999    8


Q ss_pred             cCCeeEEEe----ecCccceE-----EEEEcCCCCeEEE--EeCCC--cEEEecCCCCCCCCCCCCcccceeeeecCCCC
Q 021160          182 KGGKLVRLM----VGDRHVVN-----QLEPHPHIPMFAT--CGIEK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGRED  248 (316)
Q Consensus       182 ~~~~~~~~~----~~~~~~v~-----~~~~~p~~~~l~s--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (316)
                      .++++...+    ..|...+.     .++|+|+++.|+.  ...++  .|.+|++.+++...+..+...+.....+  ++
T Consensus       290 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~--d~  367 (719)
T 1z68_A          290 QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV--TQ  367 (719)
T ss_dssp             SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE--CS
T ss_pred             CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE--eC
Confidence            777765555    36666666     7899999996543  44555  5777888777655565554445555545  55


Q ss_pred             ceeE-EecC----CCeEEEEEecc
Q 021160          249 HSRI-TLTP----DVIMHVLRLQR  267 (316)
Q Consensus       249 ~~~~-s~~~----d~~~~~w~~~~  267 (316)
                      ..++ +...    ++..++|.+..
T Consensus       368 ~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          368 DSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CEEEEEEecCCCCCceEEEEEEeC
Confidence            5444 4444    47888998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=3.8e-16  Score=143.44  Aligned_cols=195  Identities=8%  Similarity=0.079  Sum_probs=134.5

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc-----ccEEEEEEccCCCeEEE
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-----IHITGLAYSNTSELLIS  109 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s  109 (316)
                      ....+++|+|++ .+++++  |+.|++||+.+++..              . +..+|.     .....++|||||+.|+.
T Consensus        17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~Spdg~~l~~   78 (740)
T 4a5s_A           17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSS--------------V-FLENSTFDEFGHSINDYSISPDGQFILL   78 (740)
T ss_dssp             CCCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEE--------------E-EECTTTTTTCCSCCCEEEECTTSSEEEE
T ss_pred             ccccccEECCCC-cEEEEc--CCcEEEEECCCCceE--------------E-EEechhhhhhcccccceEECCCCCEEEE
Confidence            346689999999 788886  899999999988721              1 112222     22345899999998777


Q ss_pred             ec-C---------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEE
Q 021160          110 YN-D---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  179 (316)
Q Consensus       110 ~~-d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~w  179 (316)
                      +. +         +.+.+||+.++                +. ..+..+...  +...+| +|+|+.|+.+. ++.|++|
T Consensus        79 ~~~~~~~~r~~~~~~~~~~d~~~~----------------~~-~~l~~~~~~--~~~~~~-SPdG~~la~~~-~~~i~~~  137 (740)
T 4a5s_A           79 EYNYVKQWRHSYTASYDIYDLNKR----------------QL-ITEERIPNN--TQWVTW-SPVGHKLAYVW-NNDIYVK  137 (740)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTT----------------EE-CCSSCCCTT--EEEEEE-CSSTTCEEEEE-TTEEEEE
T ss_pred             EECCeeeEEEccceEEEEEECCCC----------------cE-EEcccCCCc--ceeeEE-CCCCCEEEEEE-CCeEEEE
Confidence            53 3         66789999987                33 335555544  899999 99999999885 6899999


Q ss_pred             eccCCeeEEEe-ecCccce-----------------EEEEEcCCCCeEEEEeCCC-------------------------
Q 021160          180 KKKGGKLVRLM-VGDRHVV-----------------NQLEPHPHIPMFATCGIEK-------------------------  216 (316)
Q Consensus       180 d~~~~~~~~~~-~~~~~~v-----------------~~~~~~p~~~~l~s~~~d~-------------------------  216 (316)
                      ++.+++..+.. .++...+                 ..+.|||||+.||.++.|.                         
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            99888754422 2222222                 3488999999998875332                         


Q ss_pred             -----------cEEEecCCC---C---CCCCCCC------CcccceeeeecCCCCceeEEecC----CCeEEEEEecccC
Q 021160          217 -----------TVKLWAPMP---T---DFPPLPD------NAEKIMKANKQGREDHSRITLTP----DVIMHVLRLQRRQ  269 (316)
Q Consensus       217 -----------~i~iwd~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~----d~~~~~w~~~~~~  269 (316)
                                 .|++||+.+   +   +...+..      +...+.... |+++++.++....    +..|++||+.+++
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT-WATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEE-EEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEE-EeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                       478888887   6   3223322      444444444 7888886665432    3579999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=1e-14  Score=122.51  Aligned_cols=238  Identities=8%  Similarity=0.048  Sum_probs=140.6

Q ss_pred             eeeEEEEeeCC--CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            3 LFNMLFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         3 g~v~vwd~~~~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      |.|.+|++...  +...+....         .+......+++  ++ +++++++ .++.|.+|++..........   ..
T Consensus        75 ~~v~~~~~~~~~g~~~~~~~~~---------~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~---~~  139 (361)
T 3scy_A           75 AAVSAFAFDKEKGTLHLLNTQK---------TMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPAS---DV  139 (361)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEE---------CSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCS---EE
T ss_pred             CcEEEEEEeCCCCcEEEeeEec---------cCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccc---ee
Confidence            68999999864  222222221         12345677777  66 5555554 68899999997543211100   00


Q ss_pred             eeccc--ccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCc---ceee-CCcCC
Q 021160           80 DTFCP--RHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS-GHRNS  151 (316)
Q Consensus        80 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~  151 (316)
                      .....  ......+...+.+++|+|+|++++ +. .++.|.+|++..........       .....   .... ...  
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~--  210 (361)
T 3scy_A          140 IEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE-------KFLTKGTPEAFKVAPG--  210 (361)
T ss_dssp             EECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC-------CCEEEEEEEEEECCTT--
T ss_pred             EEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc-------ceeecccccceecCCC--
Confidence            00000  000012234578899999998554 44 48899999987651000000       00000   1111 222  


Q ss_pred             ceeeeEEEecCCCcEEEEec-cCCeEEEEeccCCee--EEEee---cCccceEEEEEcCCCCeEEEEeC--CCcEEEecC
Q 021160          152 QTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKL--VRLMV---GDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAP  223 (316)
Q Consensus       152 ~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~~--~~~~~---~~~~~v~~~~~~p~~~~l~s~~~--d~~i~iwd~  223 (316)
                      ..+..++| +|+|+++++++ .++.|.+|++.+++.  +..+.   .+...+..++|+|++++|++++.  ++.|.+|++
T Consensus       211 ~~~~~~~~-spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          211 SGPRHLIF-NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             CCEEEEEE-CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CCCeEEEE-cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            23788999 99999887776 689999999998765  23332   23345689999999998866554  489999998


Q ss_pred             C--CCCCC---CCCCCcccceeeeecCCCCceeEEec-CCCeEEEEEecc
Q 021160          224 M--PTDFP---PLPDNAEKIMKANKQGREDHSRITLT-PDVIMHVLRLQR  267 (316)
Q Consensus       224 ~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~w~~~~  267 (316)
                      .  ++.+.   .+.. ...+..++ +++++++++.+. .++.+.+|++..
T Consensus       290 ~~~~g~~~~~~~~~~-g~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          290 DETNGTLTKVGYQLT-GIHPRNFI-ITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             CTTTCCEEEEEEEEC-SSCCCEEE-ECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             cCCCCcEEEeeEecC-CCCCceEE-ECCCCCEEEEEECCCCCEEEEEEEC
Confidence            6  33321   1211 22333344 788888776665 679999987653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=1.8e-15  Score=128.21  Aligned_cols=226  Identities=12%  Similarity=0.073  Sum_probs=149.2

Q ss_pred             EEECCCCCcEEEEEec-CCc--EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcE
Q 021160           40 IVIDPRNPNYFAVGGS-DEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV  115 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~-dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i  115 (316)
                      .+|+|+| ++|+.++. ++.  |.+||+.+++.               ..+..++...+..+.|+|+|+.|+.. .++.|
T Consensus        41 ~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~---------------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           41 KCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVA---------------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL  104 (388)
T ss_dssp             CCBCTTS-CEEEEEECTTSSCEEEEEETTTCEE---------------EECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred             ccCCCCC-CEEEEEEcCCCCceEEEEeCCCCce---------------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence            7899999 77777766 663  88889887762               12224444444467899999977774 67899


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE-ecCCCcEEEEe----------------------cc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSG----------------------SD  172 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~----------------------~~  172 (316)
                      ++||+.++                +....+..+...  +....| .++++.+++..                      ..
T Consensus       105 ~~~d~~~g----------------~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A          105 MRVDLATL----------------EENVVYQVPAEW--VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             EEEETTTC----------------CEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             EEEECCCC----------------cceeeeechhhc--ccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence            99999887                444444444432  332222 27899888742                      23


Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcC-CCCeEEEEeCC------CcEEEecCCCCCCCCCCCCcc--cceeeee
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIE------KTVKLWAPMPTDFPPLPDNAE--KIMKANK  243 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~  243 (316)
                      +..|++||+.+++.. .+..+...+..++|+| +++.|+..+.+      ..|.++++.++....+..+..  .+. ...
T Consensus       167 ~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~  244 (388)
T 3pe7_A          167 CCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT-HEF  244 (388)
T ss_dssp             CEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE-EEE
T ss_pred             cceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc-cce
Confidence            478999999988754 4444566789999999 99988877653      378888888776555554442  333 334


Q ss_pred             cCCCCceeEEecC--C---CeEEEEEecccCcceeE---------------Eeeccccccccc---------CCCCeEEE
Q 021160          244 QGREDHSRITLTP--D---VIMHVLRLQRRQTLAYR---------------ERRYNAADFESD---------EEEGETYL  294 (316)
Q Consensus       244 ~~~~~~~~~s~~~--d---~~~~~w~~~~~~~~~~~---------------~~~~~~~~~~~~---------~~~~~v~~  294 (316)
                      |+++++.++..+.  +   ..+.+|++.+++.....               .++|++..++..         .....|++
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            8898887654332  2   24999998876532221               256666666532         44557999


Q ss_pred             EeccCCC
Q 021160          295 LGFSDSD  301 (316)
Q Consensus       295 ~~~~~~~  301 (316)
                      ++...+.
T Consensus       325 ~d~~~~~  331 (388)
T 3pe7_A          325 FNMKNGT  331 (388)
T ss_dssp             EETTTTE
T ss_pred             EeccCCc
Confidence            9987653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=8.5e-15  Score=123.25  Aligned_cols=233  Identities=9%  Similarity=0.054  Sum_probs=145.5

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCc-CCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe--EEEe-
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL--LISY-  110 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s~-  110 (316)
                      ..+..++|+|++ ++|++++.+ .|.+|++. ++++..            .... ..+ .....++|+|+|++  ++++ 
T Consensus        40 ~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~------------~~~~-~~~-g~~~~~~~spdg~~l~~~~~~  103 (365)
T 1jof_A           40 EPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVH------------EASH-PIG-GHPRANDADTNTRAIFLLAAK  103 (365)
T ss_dssp             CCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEE------------EEEE-ECC-SSGGGGCTTSCCEEEEEEECS
T ss_pred             CCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEE------------eeEe-ecC-CCCccEEECCCCCEEEEEEec
Confidence            357889999999 788888887 99999997 665210            0000 000 12335789999983  4343 


Q ss_pred             -------------cCCcEEEEEcCC-CCCCCCccCCccccccCCCcceeeC--CcCCceeeeEEEecCCCcEEEEec-cC
Q 021160          111 -------------NDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGS-DC  173 (316)
Q Consensus       111 -------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~-~d  173 (316)
                                   .++.+.+|++.. +                .....+..  +.....+.+++| +|+|++++++. .+
T Consensus       104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~  166 (365)
T 1jof_A          104 QPPYAVYANPFYKFAGYGNVFSVSETG----------------KLEKNVQNYEYQENTGIHGMVF-DPTETYLYSADLTA  166 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTC----------------CEEEEEEEEECCTTCCEEEEEE-CTTSSEEEEEETTT
T ss_pred             CCcceeccceeecCCceEEEEccCCCC----------------cCcceEeeEEeCCCCcceEEEE-CCCCCEEEEEcCCC
Confidence                         588999999973 3                22222221  111133889999 99999888765 46


Q ss_pred             CeEEEEecc-CCeeE--EEee--cCccceEEEEEcCCCCeEEEEeC-CCcEEEecCC--CCCC-------CCCCCC----
Q 021160          174 GHLFIWKKK-GGKLV--RLMV--GDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPM--PTDF-------PPLPDN----  234 (316)
Q Consensus       174 g~v~~wd~~-~~~~~--~~~~--~~~~~v~~~~~~p~~~~l~s~~~-d~~i~iwd~~--~~~~-------~~~~~~----  234 (316)
                      +.|++|++. +++..  ..+.  .|...+..++|+|+++++++++. ++.|.+|++.  ++++       ..++..    
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            899999998 77653  2333  23567899999999999877764 6899999764  3332       123221    


Q ss_pred             cc------cceeeeecCCCCceeEEecCC-C-----eEEEEEec-ccCcce---eE----------Eeec---ccccccc
Q 021160          235 AE------KIMKANKQGREDHSRITLTPD-V-----IMHVLRLQ-RRQTLA---YR----------ERRY---NAADFES  285 (316)
Q Consensus       235 ~~------~~~~~~~~~~~~~~~~s~~~d-~-----~~~~w~~~-~~~~~~---~~----------~~~~---~~~~~~~  285 (316)
                      ..      .+..+..++++++++++...+ .     .+.+|++. +++...   ..          .++|   ++..+..
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v  326 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred             ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEE
Confidence            11      232333278888877655432 3     89999996 343221   11          1245   4555554


Q ss_pred             cC-CCCeEEEEeccCC
Q 021160          286 DE-EEGETYLLGFSDS  300 (316)
Q Consensus       286 ~~-~~~~v~~~~~~~~  300 (316)
                      .. +++.|.+|+...+
T Consensus       327 ~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          327 TDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSSCEEEEEEEETT
T ss_pred             EEcCCCeEEEEEEchh
Confidence            43 4577877776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=1.5e-14  Score=117.46  Aligned_cols=223  Identities=11%  Similarity=0.145  Sum_probs=147.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEE-CCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI-DPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~-~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|++||.. .+....+....     ...+|...+.++++ .+++ +++++... ++.|.+||. +++.           
T Consensus        51 ~~i~~~d~~-g~~~~~~~~~~-----~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~-~g~~-----------  111 (286)
T 1q7f_A           51 HRIQIFDKE-GRFKFQFGECG-----KRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQ-YGQF-----------  111 (286)
T ss_dssp             TEEEEECTT-SCEEEEECCBS-----SSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECT-TSCE-----------
T ss_pred             CEEEEECCC-CcEEEEecccC-----CCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEECC-CCcE-----------
Confidence            568888865 22222221100     01234567899999 5666 66666643 889999994 4441           


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                         ...+...+...+..+++.++|+++++. .++.|.+||....                 ....+........+..+++
T Consensus       112 ---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----------------~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          112 ---VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-----------------VLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             ---EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----------------EEEEEECTTTCSSEEEEEE
T ss_pred             ---EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-----------------EEEEeCCCCccCCcEEEEE
Confidence               111212334567899999999988775 5889999996542                 3444432111123889998


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCC-cEEEecCCCCCCCCCCCCcc
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDFPPLPDNAE  236 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~  236 (316)
                       ++++.++++...++.|++|+.. ++.+..+..+  ...+..++++|+++++++...++ .|.+|+.....+..+..+..
T Consensus       172 -~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~  249 (286)
T 1q7f_A          172 -NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK  249 (286)
T ss_dssp             -CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC
T ss_pred             -CCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCC
Confidence             8999988888889999999985 6666666433  35788999999999888887776 99999976544433332221


Q ss_pred             --cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          237 --KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       237 --~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                        .+..++ +.++++++++ +.++.|++|++...
T Consensus       250 ~~~~~~i~-~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          250 HAQCFDVA-LMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CSCEEEEE-EETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCcceeEE-ECCCCcEEEE-CCCCeEEEEEcccc
Confidence              122333 5677877777 56899999987543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=2.6e-15  Score=126.38  Aligned_cols=223  Identities=10%  Similarity=0.042  Sum_probs=139.6

Q ss_pred             eeEEEEee-CCCcceEEEeccccccccCCCCccceEEEEECCCCCc--EEEEEe-------------cCCcEEEEeCcC-
Q 021160            4 FNMLFDLR-SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN--YFAVGG-------------SDEYARVYDIRK-   66 (316)
Q Consensus         4 ~v~vwd~~-~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~--~l~~g~-------------~dg~v~~wd~~~-   66 (316)
                      .|.+||+. +.+........ .         .+.+.+++|+|++ +  +++++.             .++.+.+|++.. 
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~-~---------~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~  129 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHP-I---------GGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET  129 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEE-C---------CSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred             eEEEEEECCCCCEEEeeEee-c---------CCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence            68899997 54432222211 0         0124568999999 6  345553             689999999973 


Q ss_pred             CcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcC-CCCCCCCccCCccccccCCC--
Q 021160           67 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKN-MGLGPSPLSLSPEDLQKREE--  141 (316)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~--  141 (316)
                      +++..         .  .......+...+.+++|+|+|++++++  .++.|++|++. ++                +.  
T Consensus       130 g~~~~---------~--~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g----------------~~~~  182 (365)
T 1jof_A          130 GKLEK---------N--VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG----------------EVEL  182 (365)
T ss_dssp             CCEEE---------E--EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS----------------CEEE
T ss_pred             CcCcc---------e--EeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC----------------CEEE
Confidence            43210         0  000001234678899999999966654  47899999997 55                22  


Q ss_pred             cceeeC--CcCCceeeeEEEecCCCcEEEEecc-CCeEEEEecc--CCeeE---EEee---c----Ccc------ceEEE
Q 021160          142 PQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKK--GGKLV---RLMV---G----DRH------VVNQL  200 (316)
Q Consensus       142 ~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~--~~~~~---~~~~---~----~~~------~v~~~  200 (316)
                      ...+..  +..  .+..++| +|+|+++++++. ++.|.+|++.  +++..   ..+.   .    |..      .+..+
T Consensus       183 ~~~~~~~~~g~--~p~~~~~-spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          183 VGSVDAPDPGD--HPRWVAM-HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEECSSTTC--CEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             eeeEecCCCCC--CCCEeEE-CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence            122321  233  3889999 999999887764 7899999865  56543   1222   1    122      47899


Q ss_pred             E-EcCCCCeEEEEeCC-C-----cEEEecCC-CCCCCC----CCCCcccceeeeecCC---CCceeEEecC-CCeEEEEE
Q 021160          201 E-PHPHIPMFATCGIE-K-----TVKLWAPM-PTDFPP----LPDNAEKIMKANKQGR---EDHSRITLTP-DVIMHVLR  264 (316)
Q Consensus       201 ~-~~p~~~~l~s~~~d-~-----~i~iwd~~-~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~s~~~-d~~~~~w~  264 (316)
                      + |+|++++|++++.+ .     .|.+|++. ++++..    ...+......++ +++   ++++++.+.. ++.+++|+
T Consensus       260 ~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a-~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce-ecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            9 99999987766533 2     89999986 444321    111222222233 455   6888887776 49999999


Q ss_pred             eccc
Q 021160          265 LQRR  268 (316)
Q Consensus       265 ~~~~  268 (316)
                      +...
T Consensus       339 ~~~~  342 (365)
T 1jof_A          339 WKDE  342 (365)
T ss_dssp             EETT
T ss_pred             Echh
Confidence            8765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=2.3e-14  Score=118.82  Aligned_cols=203  Identities=11%  Similarity=0.103  Sum_probs=139.3

Q ss_pred             ccceEEEEECCCCCcEEEEEecC------------------------CcEEEEeCcCCcccCCCCCCCCceecccccccC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSD------------------------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG   89 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~d------------------------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (316)
                      -+.+.+++++|+| +++++...+                        +.|.+||..++++.              .....
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~   87 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--------------QSSGK   87 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------EEECT
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------eccCC
Confidence            3579999999999 788887766                        47999999877632              12212


Q ss_pred             CCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee---------CCcCCceeeeEEE
Q 021160           90 KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---------GHRNSQTVKGVNF  159 (316)
Q Consensus        90 ~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~  159 (316)
                      ++-.....++++++|+++++. .++.|++||.....               ..+..+.         ++..  ....+++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~---------------~~~~~~~~~~~~g~~~~~~~--~P~~ia~  150 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE---------------GPLLILGRSMQPGSDQNHFC--QPTDVAV  150 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS---------------CCSEEESBTTBCCCSTTCCS--SEEEEEE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe---------------EEEEEecccCCCCCCccccC--CCcEEEE
Confidence            344568899999999988875 68999999986531               1233331         2222  3789999


Q ss_pred             ecC-CCcEEEEec-cCCeEEEEeccCCeeEEEeecC----------ccceEEEEEcCC-CCeEEEEeCCCcEEEecCCCC
Q 021160          160 FGP-NDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD----------RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       160 ~~~-~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~----------~~~v~~~~~~p~-~~~l~s~~~d~~i~iwd~~~~  226 (316)
                       +| ++.++++.+ .++.|++|+ .+++.+..+...          -..+..++++|+ +.++++...++.|++|+..++
T Consensus       151 -~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          151 -EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             -CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             -eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence             88 788888886 699999999 457777666422          234889999998 777888888999999999855


Q ss_pred             C-CCCC--CCCcccceeeeecCC------CCceeEEecCCCeEEEEEecccCcc
Q 021160          227 D-FPPL--PDNAEKIMKANKQGR------EDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       227 ~-~~~~--~~~~~~~~~~~~~~~------~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      + +..+  ..+...+..+. +.+      ++...++...+..+++|++.+++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~-~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFAIS-YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             CEEEEECCTTTTTCEEEEE-EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred             cEEEEEeccccCCCcceee-ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence            5 3322  22333343333 333      3444444455668999997766443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=1.3e-14  Score=131.64  Aligned_cols=191  Identities=10%  Similarity=0.029  Sum_probs=127.3

Q ss_pred             EEEEC--CCCCcE-EEEEe-cCCcEEEEeCc--C-CcccCCCCCCCCceecccccccC----CCcccEEEEEEccCCCeE
Q 021160           39 AIVID--PRNPNY-FAVGG-SDEYARVYDIR--K-CHWYSPISSDTPVDTFCPRHLIG----KNNIHITGLAYSNTSELL  107 (316)
Q Consensus        39 ~~~~~--~~~~~~-l~~g~-~dg~v~~wd~~--~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l  107 (316)
                      ...|+  |++ +. |+.++ .+..|.++++.  . ++               ...+..    .|...+..++|+|+|+.|
T Consensus        81 ~~~~~~SPDg-~~~la~~~~~~~~l~~~~~~~~g~~~---------------~~~l~~~~~~~~~~~~~~~~~spDg~~l  144 (662)
T 3azo_A           81 PWAGVPRPAG-GPLLVFTHFGDQRLYAFEPDAPGGAV---------------PRPLTPVSAVGGGLRWADPVLLPERGEV  144 (662)
T ss_dssp             CEEEECCSSS-SCEEEEEBTTTCCEEEECTTSTTCCC---------------CEECSCCCCSTTCEEEEEEEEETTTTEE
T ss_pred             cceeeeecCC-CeEEEEEECCCCeEEEEcCCCCCCCC---------------CEeccCCccCCCCccccCcEECCCCCEE
Confidence            45555  999 55 55443 35667777765  2 32               111111    156778899999999977


Q ss_pred             EEe-cC----------CcEEEEEcCC------CCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEE
Q 021160          108 ISY-ND----------ELVYLFEKNM------GLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus       108 ~s~-~d----------~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      +.+ .+          ..|++||+.+      +                .. ..+. .+..  .+..++| +|||++|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~-~~l~~~~~~--~~~~~~~-SpDG~~la~  204 (662)
T 3azo_A          145 WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS----------------AV-RELSDDAHR--FVTGPRL-SPDGRQAVW  204 (662)
T ss_dssp             EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG----------------GS-EESSCSCSS--EECCCEE-CTTSSEEEE
T ss_pred             EEEEecccCCCCCCceeEEEEEECCCCccccCC----------------ce-eEEEecCCC--cccCceE-CCCCCEEEE
Confidence            764 44          4799999987      4                22 3333 3333  3788898 999999998


Q ss_pred             eccC--------CeEEEEecc-CC---eeEEEeecCccceEEEEEcCCCCeEEEEeCCC--cEEEecCCCCCCCCCCCCc
Q 021160          170 GSDC--------GHLFIWKKK-GG---KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TVKLWAPMPTDFPPLPDNA  235 (316)
Q Consensus       170 ~~~d--------g~v~~wd~~-~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~  235 (316)
                      ++.+        ..|++||+. ++   +.......|...+..++|+|+++++++++.++  .|.+||+.+++...+..+.
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence            7754        379999998 57   44444455678899999999999888888888  6667777666533333222


Q ss_pred             ccce--------eeeecCCCCceeEEecCCCeEEEEEec
Q 021160          236 EKIM--------KANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       236 ~~~~--------~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ..+.        ....+++++.++++.+. +..++|.+.
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            2221        12224567888888888 999999554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.2e-14  Score=120.61  Aligned_cols=228  Identities=10%  Similarity=0.004  Sum_probs=152.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      |.|.+||..+.+....+..          ++-.....++++|++ +++++...++.|++|+......        .+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~----------~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~--------~~~~~  129 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGK----------NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG--------PLLIL  129 (329)
T ss_dssp             CCEEEECTTTCCEEEEECT----------TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC--------CSEEE
T ss_pred             CcEEEEECCCCeEEeccCC----------CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE--------EEEEe
Confidence            5688898876654322211          234568899999999 7888888899999999864310        01111


Q ss_pred             cc---ccccCCCcccEEEEEEcc-CCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC------
Q 021160           83 CP---RHLIGKNNIHITGLAYSN-TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN------  150 (316)
Q Consensus        83 ~~---~~~~~~~~~~i~~~~~~~-~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  150 (316)
                      ..   ......+......++++| ++.++++.  .++.|++|+....                 ....+.....      
T Consensus       130 ~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-----------------~~~~~~~~g~~~~~~~  192 (329)
T 3fvz_A          130 GRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-----------------FVTQWGEESSGSSPRP  192 (329)
T ss_dssp             SBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-----------------EEEEECEECCSSSCCT
T ss_pred             cccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-----------------EEEEeccCCCCCCCCC
Confidence            00   000023345688999999 78888884  4899999995432                 3333321110      


Q ss_pred             --CceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEee--cCccceEEEEEcC------CCCeEEEEeCCCcEE
Q 021160          151 --SQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHP------HIPMFATCGIEKTVK  219 (316)
Q Consensus       151 --~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~p------~~~~l~s~~~d~~i~  219 (316)
                        ......+++ +|+ +.++++...++.|++|+..+++.+..+.  .+...+..++|+|      +++.+++...+..|+
T Consensus       193 ~~~~~p~gia~-d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~  271 (329)
T 3fvz_A          193 GQFSVPHSLAL-VPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF  271 (329)
T ss_dssp             TEESCEEEEEE-ETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred             cccCCCcEEEE-ECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence              012788998 888 7888888889999999999899888874  3556788999999      333333333445899


Q ss_pred             EecCCCCC-CCCC---CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          220 LWAPMPTD-FPPL---PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       220 iwd~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      +|++.+++ +..+   ..+......++ +++++.++++...++.|++|++...
T Consensus       272 ~~~~~~g~~~~~~~~~~~~~~~p~~ia-~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          272 VMNFSSGEIIDVFKPVRKHFDMPHDIV-ASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEETTTCCEEEEECCSSSCCSSEEEEE-ECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEEcCCCeEEEEEcCCCCccCCeeEEE-ECCCCCEEEEECCCCEEEEEeCCcc
Confidence            99988876 3222   23444444555 6778888889888999999987643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=2.2e-15  Score=127.67  Aligned_cols=219  Identities=11%  Similarity=0.040  Sum_probs=137.6

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .|.+||+.+.+..++..           +|...+..++|+|++ +.|+.++.++.|++||+.+++..             
T Consensus        61 ~l~~~d~~~g~~~~lt~-----------~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~-------------  115 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTE-----------GRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEEN-------------  115 (388)
T ss_dssp             EEEEEETTTCEEEECCC-----------SSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCEE-------------
T ss_pred             eEEEEeCCCCceEEeee-----------CCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcce-------------
Confidence            46777776654433221           134445567899999 88999998899999999987621             


Q ss_pred             cccccCCCcccEEEE--EEccCCCeEEEe-----------------------cCCcEEEEEcCCCCCCCCccCCcccccc
Q 021160           84 PRHLIGKNNIHITGL--AYSNTSELLISY-----------------------NDELVYLFEKNMGLGPSPLSLSPEDLQK  138 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~--~~~~~~~~l~s~-----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~  138 (316)
                        .+...+...+...  .++|++++++..                       .+..|++||+.++               
T Consensus       116 --~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g---------------  178 (388)
T 3pe7_A          116 --VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG---------------  178 (388)
T ss_dssp             --EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC---------------
T ss_pred             --eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC---------------
Confidence              1112223333333  348999877641                       2467999999876               


Q ss_pred             CCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccC------CeEEEEeccCCeeEEEeecCc--cceEEEEEcCCCCeE
Q 021160          139 REEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDC------GHLFIWKKKGGKLVRLMVGDR--HVVNQLEPHPHIPMF  209 (316)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l  209 (316)
                       + ...+..+...  +..+.| +| +|+.|+.....      ..|+++|...++. ..+..+.  ..+..++|+|+++.|
T Consensus       179 -~-~~~l~~~~~~--~~~~~~-sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          179 -E-STVILQENQW--LGHPIY-RPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             -C-EEEEEEESSC--EEEEEE-ETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCE
T ss_pred             -c-eEEeecCCcc--ccccEE-CCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEE
Confidence             3 3344444433  888998 99 99988877653      3788888875553 4444443  357789999999987


Q ss_pred             EEEeC-CC----cEEEecCCCCCCCCC---CCCcccc--eeeeecCCCCceeEEe---------cCCCeEEEEEecccCc
Q 021160          210 ATCGI-EK----TVKLWAPMPTDFPPL---PDNAEKI--MKANKQGREDHSRITL---------TPDVIMHVLRLQRRQT  270 (316)
Q Consensus       210 ~s~~~-d~----~i~iwd~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~s~---------~~d~~~~~w~~~~~~~  270 (316)
                      +..+. ++    .|++||+.+++...+   .++....  .....+++++..++..         ..+..|.+|++.+++.
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            65443 22    399999998763322   2210000  0111367777766643         4567899999887643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=1.2e-13  Score=112.03  Aligned_cols=204  Identities=8%  Similarity=0.135  Sum_probs=142.8

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEE-ccCCCeEEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s  109 (316)
                      .+|...+.+++++|++ +++++...++.|.+||.. ++..         ..+.......++...+..+++ .++++++++
T Consensus        26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~---------~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~   94 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFK---------FQFGECGKRDSQLLYPNRVAVVRNSGDIIVT   94 (286)
T ss_dssp             TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEE---------EEECCBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred             CCccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEE---------EEecccCCCcccccCceEEEEEcCCCeEEEE
Confidence            3566789999999998 788888889999999987 3311         111111111234557889999 577887777


Q ss_pred             e-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          110 Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       110 ~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      . . ++.|.+||.. +                +....+.... ...+.++++ +++++++++...++.|++|+.. ++.+
T Consensus        95 ~~~~~~~i~~~d~~-g----------------~~~~~~~~~~-~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~  154 (286)
T 1q7f_A           95 ERSPTHQIQIYNQY-G----------------QFVRKFGATI-LQHPRGVTV-DNKGRIIVVECKVMRVIIFDQN-GNVL  154 (286)
T ss_dssp             ECGGGCEEEEECTT-S----------------CEEEEECTTT-CSCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cCCCCCEEEEECCC-C----------------cEEEEecCcc-CCCceEEEE-eCCCCEEEEECCCCEEEEEcCC-CCEE
Confidence            5 3 8999999943 3                3444443221 123889998 8999988888888999999965 6666


Q ss_pred             EEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCC--cccceeeeecCCCCceeEEecCCC-eEEE
Q 021160          188 RLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--AEKIMKANKQGREDHSRITLTPDV-IMHV  262 (316)
Q Consensus       188 ~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~-~~~~  262 (316)
                      ..+.  .+...+..++++|+++++++...++.|++|+.....+..+...  ...+..++ ..++++++++...++ .|.+
T Consensus       155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNNFNLTI  233 (286)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEE
T ss_pred             EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEE-ECCCCCEEEEeCCCCEEEEE
Confidence            6654  3445689999999999888888899999999865543333222  23333444 667888888888776 9999


Q ss_pred             EEec
Q 021160          263 LRLQ  266 (316)
Q Consensus       263 w~~~  266 (316)
                      |+..
T Consensus       234 ~~~~  237 (286)
T 1q7f_A          234 FTQD  237 (286)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.60  E-value=4e-14  Score=128.46  Aligned_cols=200  Identities=12%  Similarity=0.136  Sum_probs=131.7

Q ss_pred             CccceEEEEECCCCCcEEEEEecC----------CcEEEEeCcC------CcccCCCCCCCCceecccccccC-CCcccE
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSD----------EYARVYDIRK------CHWYSPISSDTPVDTFCPRHLIG-KNNIHI   95 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~d----------g~v~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i   95 (316)
                      |...+.+++|+|+| +.|+.++.+          ..|++||+.+      ++               ...+ . .+...+
T Consensus       128 ~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~l-~~~~~~~~  190 (662)
T 3azo_A          128 GGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---------------VREL-SDDAHRFV  190 (662)
T ss_dssp             TCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---------------SEES-SCSCSSEE
T ss_pred             CCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---------------eeEE-EecCCCcc
Confidence            56678999999999 788887766          5899999987      43               1222 2 344577


Q ss_pred             EEEEEccCCCeEEE-ecC--------CcEEEEEcC-CCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160           96 TGLAYSNTSELLIS-YND--------ELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  165 (316)
Q Consensus        96 ~~~~~~~~~~~l~s-~~d--------~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  165 (316)
                      ..++|+|||+.|+. +.+        ..|++||+. ++.             .........++...  +..++| +|+|+
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-------------~~~~~~l~~~~~~~--~~~~~~-spdg~  254 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-------------FADTRTLLGGPEEA--IAQAEW-APDGS  254 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-------------EEEEEEEEEETTBC--EEEEEE-CTTSC
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-------------ccccEEeCCCCCce--EcceEE-CCCCe
Confidence            88999999997775 433        379999997 330             00122223333433  889999 99999


Q ss_pred             EEEEeccCC--eEEEEeccCCeeEEEeecCccc--------eEEEEEcCCCCeEEEEeCCCcEEEe--cCCCCCCCCCCC
Q 021160          166 YVMSGSDCG--HLFIWKKKGGKLVRLMVGDRHV--------VNQLEPHPHIPMFATCGIEKTVKLW--APMPTDFPPLPD  233 (316)
Q Consensus       166 ~l~~~~~dg--~v~~wd~~~~~~~~~~~~~~~~--------v~~~~~~p~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~  233 (316)
                      +++++..++  .|++||+.+++.......+...        +..++|+|+++++++++. +.++||  |+.+++...+..
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~  333 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAG  333 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCS
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecC
Confidence            888888888  6777777777755444433222        567889999999999988 999999  666666666665


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +...+........+.-.+++.+.+....+|.+.
T Consensus       334 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          334 PWTEWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence            554443331122222344455666555555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=2.6e-13  Score=113.10  Aligned_cols=202  Identities=10%  Similarity=0.094  Sum_probs=128.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC---C--cEEEEeCcCCcccCCCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---E--YARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d---g--~v~~wd~~~~~~~~~~~~~   76 (316)
                      .+.|.+||+.+.+...+                ..+..++|+|+| ++|+..+.+   +  .|.+|++.+++.       
T Consensus        42 ~~~l~~~d~~~~~~~~l----------------~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~-------   97 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----------------ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSS-------   97 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----------------ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEE-------
T ss_pred             cceEEEEeCCCCceEEc----------------ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCce-------
Confidence            35677888876554322                147889999999 777776543   3  377788877652       


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCCeEEEe-cC---------------------------CcEEEEEcCCCCCCCC
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND---------------------------ELVYLFEKNMGLGPSP  128 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d---------------------------~~i~iwd~~~~~~~~~  128 (316)
                              ..+.. +.. +..++|+|+|+.|+.. .+                           ..|++||+.++     
T Consensus        98 --------~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----  162 (347)
T 2gop_A           98 --------KKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----  162 (347)
T ss_dssp             --------EEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-----
T ss_pred             --------EEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-----
Confidence                    11111 123 8899999999966663 22                           46889998776     


Q ss_pred             ccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC-------eEEEEeccCCeeEEEeecCccceEEEE
Q 021160          129 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-------HLFIWKKKGGKLVRLMVGDRHVVNQLE  201 (316)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~v~~wd~~~~~~~~~~~~~~~~v~~~~  201 (316)
                                 +....+.. . .  +..++| +|+| +++++..++       ...+|.+.+++.. .+..+ ..+..+ 
T Consensus       163 -----------~~~~~l~~-~-~--~~~~~~-spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~-  222 (347)
T 2gop_A          163 -----------EVIEEFEK-P-R--FSSGIW-HRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV-  222 (347)
T ss_dssp             -----------EEEEEEEE-E-T--TCEEEE-ETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE-
T ss_pred             -----------eEEeeecC-C-C--cccccC-CCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE-
Confidence                       33244443 2 3  788898 8999 777775542       3344444456543 44334 455444 


Q ss_pred             EcCCCCeEEEEeCC--------CcEEEecCCCCCCCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          202 PHPHIPMFATCGIE--------KTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       202 ~~p~~~~l~s~~~d--------~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                       +|+|+.|+.++.+        ..|.+||  +++...+ ..+...+.....|+ ++ ++++++.++..++| +.++
T Consensus       223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             -CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence             9999998877644        3688888  4443323 33344444424466 77 88888999999999 8743

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=1.7e-14  Score=122.40  Aligned_cols=230  Identities=10%  Similarity=0.027  Sum_probs=142.8

Q ss_pred             ceEEEEECCCCCcEEEEEec-C--CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160           36 RLNAIVIDPRNPNYFAVGGS-D--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~-d--g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  111 (316)
                      .+..++|+|+| ++|+.... +  ..|.+||+.+++..               .+...+......+.|+|+|+.|+. +.
T Consensus        37 ~~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~---------------~l~~~~~~~~~~~~~spdg~~l~~~~~  100 (396)
T 3c5m_A           37 YFYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAV---------------QLTEGKGDNTFGGFISTDERAFFYVKN  100 (396)
T ss_dssp             CTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEE---------------ECCCSSCBCTTTCEECTTSSEEEEEET
T ss_pred             eeecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEE---------------EeecCCCCccccceECCCCCEEEEEEc
Confidence            36788999999 66665543 2  46888898877521               111222222233689999997766 56


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee-------------------EEEecCCCcEEEEe--
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG-------------------VNFFGPNDEYVMSG--  170 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l~~~--  170 (316)
                      ++.|++||+.++                +.......+...  ...                   +.| +|+++.++..  
T Consensus       101 ~~~l~~~d~~~~----------------~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~  161 (396)
T 3c5m_A          101 ELNLMKVDLETL----------------EEQVIYTVDEEW--KGYGTWVANSDCTKLVGIEILKRDW-QPLTSWEKFAEF  161 (396)
T ss_dssp             TTEEEEEETTTC----------------CEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGC-CCCCSHHHHHHH
T ss_pred             CCcEEEEECCCC----------------CcEEEEeccccc--CCCCCEEEeccCCcccccccccccc-CCCCcceeeeee
Confidence            778999999876                333333322211  111                   244 7777776654  


Q ss_pred             ---ccCCeEEEEeccCCeeEEEeecCccceEEEEEcC-CCCeEEEEeCC------CcEEEecCCCCCCCCCCCCc-ccce
Q 021160          171 ---SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIE------KTVKLWAPMPTDFPPLPDNA-EKIM  239 (316)
Q Consensus       171 ---~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~-~~~~  239 (316)
                         ..+..|++||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+|++.++....+..+. ....
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC  240 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred             ccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence               35678999999988765444 4566789999999 78776665543      46889998776644444332 2223


Q ss_pred             eeeecCCCCceeEEecCC-----CeEEEEEecccCccee-------EEeec-cccccccc----------------CCCC
Q 021160          240 KANKQGREDHSRITLTPD-----VIMHVLRLQRRQTLAY-------RERRY-NAADFESD----------------EEEG  290 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d-----~~~~~w~~~~~~~~~~-------~~~~~-~~~~~~~~----------------~~~~  290 (316)
                      ....|+++++.++..+.+     +.+.+|++.+++....       ..+.+ ++..+...                ....
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            334488888877665443     5599999876643222       13455 55555432                1335


Q ss_pred             eEEEEeccCCC
Q 021160          291 ETYLLGFSDSD  301 (316)
Q Consensus       291 ~v~~~~~~~~~  301 (316)
                      .+++++...+.
T Consensus       321 ~i~~~d~~~~~  331 (396)
T 3c5m_A          321 FLYVLNTKAKS  331 (396)
T ss_dssp             EEEEEETTTTB
T ss_pred             cEEEEecccCc
Confidence            68888876553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=4.8e-13  Score=109.09  Aligned_cols=207  Identities=11%  Similarity=0.059  Sum_probs=134.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      |.|..||..+.  ...+..           +...+.+++++|++ +++++...++.|.+||..+++...          +
T Consensus        50 ~~i~~~~~~~~--~~~~~~-----------~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~----------~  105 (296)
T 3e5z_A           50 NRTWAWSDDGQ--LSPEMH-----------PSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWES----------I  105 (296)
T ss_dssp             TEEEEEETTSC--EEEEES-----------SCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEE----------E
T ss_pred             CEEEEEECCCC--eEEEEC-----------CCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEE----------E
Confidence            56777887654  233322           34568999999998 777777667899999997776211          0


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEe----c--------------CCcEEEEEcCCCCCCCCccCCccccccCCCcce
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISY----N--------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV  144 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  144 (316)
                      .. .........+..++++|+|+++++.    .              .+.|..++.. +                 ....
T Consensus       106 ~~-~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----------------~~~~  166 (296)
T 3e5z_A          106 AD-SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----------------TLSA  166 (296)
T ss_dssp             EC-EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----------------CEEE
T ss_pred             ee-ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-----------------CEEE
Confidence            00 0001112345679999999988862    1              2355555544 3                 2233


Q ss_pred             eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021160          145 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  220 (316)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i  220 (316)
                      +..+...  ...++| +|+++.+++.+.++.|++|++. +++.   ...+..+...+..++++++|+++++.  ++.|.+
T Consensus       167 ~~~~~~~--~~gi~~-s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~  241 (296)
T 3e5z_A          167 PIRDRVK--PNGLAF-LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHV  241 (296)
T ss_dssp             EECCCSS--EEEEEE-CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred             eecCCCC--CccEEE-CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence            4444433  788998 9999988888888999999986 5554   23333345567789999999876666  789999


Q ss_pred             ecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160          221 WAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       221 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      |+.....+..+..+.. +..++.-.+++..+..++.++
T Consensus       242 ~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          242 LTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             ECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             ECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            9997544444443333 444442256766666666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=6.8e-13  Score=106.56  Aligned_cols=198  Identities=9%  Similarity=0.013  Sum_probs=136.8

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  113 (316)
                      ..+.++++++++ +++++.. ++.|.+||......               ..........+..+++.++|+++++. .++
T Consensus        67 ~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~---------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  129 (270)
T 1rwi_B           67 YQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQ---------------TVLPFDGLNYPEGLAVDTQGAVYVADRGNN  129 (270)
T ss_dssp             CSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCC---------------EECCCCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred             CCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceE---------------eeeecCCcCCCcceEECCCCCEEEEECCCC
Confidence            467889999988 6666555 88999999875531               11111223467899999999977774 678


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                      .|.+|+..+.                ..........  ..+.++++ +++++++++...++.|.+|+............+
T Consensus       130 ~i~~~~~~~~----------------~~~~~~~~~~--~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  190 (270)
T 1rwi_B          130 RVVKLAAGSK----------------TQTVLPFTGL--NDPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD  190 (270)
T ss_dssp             EEEEECTTCC----------------SCEECCCCSC--CSCCCEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS
T ss_pred             EEEEEECCCc----------------eeEeeccccC--CCceeEEE-eCCCCEEEEECCCCEEEEEecCCCceEeecccC
Confidence            8999975443                1111111111  22788998 889988887777899999998876644333333


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC-CCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ...+..+++++++.++++...++.|.+|+..+....... .+...+..++ +.++++++++...++.|+++++...+
T Consensus       191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEE-ECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEE-ECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            367889999999987777777889999998776532222 1223333444 56778888898899999999877654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=2.2e-12  Score=106.82  Aligned_cols=222  Identities=4%  Similarity=-0.102  Sum_probs=150.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|.+||..+.+....+..            ......+++++++ .++++...++.|.+||..++++...+        
T Consensus        63 ~~~v~viD~~t~~~~~~i~~------------~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i--------  121 (328)
T 3dsm_A           63 SHVIFAIDINTFKEVGRITG------------FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYI--------  121 (328)
T ss_dssp             GTEEEEEETTTCCEEEEEEC------------CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEE--------
T ss_pred             CCEEEEEECcccEEEEEcCC------------CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEE--------
Confidence            46899999988776555531            2357899999888 66666658899999999988743211        


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                       .... ..+.......+++ .+++++++.  .++.|.++|+.++                +....+.....   ...+++
T Consensus       122 -~~g~-~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~----------------~~~~~i~~g~~---p~~i~~  179 (328)
T 3dsm_A          122 -ECPD-MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD----------------KVVDELTIGIQ---PTSLVM  179 (328)
T ss_dssp             -ECTT-CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT----------------EEEEEEECSSC---BCCCEE
T ss_pred             -EcCC-ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC----------------eEEEEEEcCCC---ccceEE
Confidence             0000 0011113345666 455566664  3889999999887                45555554322   567888


Q ss_pred             ecCCCcEEEEeccC----------CeEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 021160          160 FGPNDEYVMSGSDC----------GHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  228 (316)
Q Consensus       160 ~~~~~~~l~~~~~d----------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~  228 (316)
                       +++|++++++..+          +.|.++|..+++....+... ...+..++|+|+++.|..+..  .|.+||+.++++
T Consensus       180 -~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          180 -DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             -CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             -cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence             8999987777654          79999999999988776532 236789999999998877654  899999988774


Q ss_pred             CCC---CCCcccceeeeecCC-CCceeEEe----cCCCeEEEEEecccCcc
Q 021160          229 PPL---PDNAEKIMKANKQGR-EDHSRITL----TPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       229 ~~~---~~~~~~~~~~~~~~~-~~~~~~s~----~~d~~~~~w~~~~~~~~  271 (316)
                      ...   .........++ ..+ ++.+.++.    ..++.|.+|+.. ++..
T Consensus       257 ~~~~~~~~~~~~p~gi~-vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          257 PVRPFLEFRDTKYYGLT-VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             CSSCSBCCCSSCEEEEE-ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             eeeeeecCCCCceEEEE-EcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            321   11122333444 555 67778887    678999999977 5433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=1.2e-13  Score=115.98  Aligned_cols=224  Identities=8%  Similarity=-0.011  Sum_probs=129.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCcccC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYS   71 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~~   71 (316)
                      ++.|.+||..+.+....+..           +..+  .++|+|++ ++++++.          .++.|.+||..+.+...
T Consensus        30 d~~v~v~D~~t~~~~~~i~~-----------g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~   95 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPT-----------AFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK   95 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEEC-----------CEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE
T ss_pred             cCeEEEEECCCCeEEEEecC-----------CCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEE
Confidence            56899999887765444332           2334  89999999 6777765          36779999998776322


Q ss_pred             CCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--c-CCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeC
Q 021160           72 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSG  147 (316)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  147 (316)
                      .+         ....-...+......++++|+|++|+.+  . ++.|.+||+.++.                .+.. +..
T Consensus        96 ~i---------~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~----------------~~~~~i~~  150 (361)
T 2oiz_A           96 EI---------SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD----------------YVEDVTAA  150 (361)
T ss_dssp             EE---------EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE----------------EEEEEGGG
T ss_pred             EE---------EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc----------------EEEEEecC
Confidence            11         1000000012345578999999977664  3 6889999998762                2222 110


Q ss_pred             CcC------------------CceeeeEEE---------------ec-----------CCCcEEEEeccCCeEEEEeccC
Q 021160          148 HRN------------------SQTVKGVNF---------------FG-----------PNDEYVMSGSDCGHLFIWKKKG  183 (316)
Q Consensus       148 ~~~------------------~~~i~~~~~---------------~~-----------~~~~~l~~~~~dg~v~~wd~~~  183 (316)
                      ...                  ...+..+.+               +.           +++..++..+.++.+.++|+..
T Consensus       151 ~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          151 AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred             CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence            000                  000111111               00           1122334444556666777654


Q ss_pred             Cee--EEEeecC----------ccceEEEEEcCCCCeEEEEeC-----------CCcEEEecCCCCC-CCCCCCCcccce
Q 021160          184 GKL--VRLMVGD----------RHVVNQLEPHPHIPMFATCGI-----------EKTVKLWAPMPTD-FPPLPDNAEKIM  239 (316)
Q Consensus       184 ~~~--~~~~~~~----------~~~v~~~~~~p~~~~l~s~~~-----------d~~i~iwd~~~~~-~~~~~~~~~~~~  239 (316)
                      .+.  ...+...          ......++|+|+++.+..+..           .+.|.+||+.+.+ +.++..+.  ..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~  308 (361)
T 2oiz_A          231 DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--AL  308 (361)
T ss_dssp             SSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CC
T ss_pred             CCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--ee
Confidence            321  1111100          011123789999887655432           3479999999887 55555444  44


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++ ++++++++++... +.|.+||..++
T Consensus       309 ~ia-~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          309 SMT-IDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEE-EETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEE-ECCCCCEEEEeCC-CeEEEEECCCC
Confidence            554 7888888887776 99999998887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=3.1e-14  Score=120.73  Aligned_cols=192  Identities=8%  Similarity=-0.028  Sum_probs=123.2

Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEE-------------------EE
Q 021160           39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG-------------------LA   99 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~   99 (316)
                      .+.|+|++ ++|+.++.++.|.+||+.+++.....               ..+......                   +.
T Consensus        85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~---------------~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  148 (396)
T 3c5m_A           85 GGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIY---------------TVDEEWKGYGTWVANSDCTKLVGIEILKRD  148 (396)
T ss_dssp             TCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE---------------ECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             cceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEE---------------ecccccCCCCCEEEeccCCccccccccccc
Confidence            47899999 88988888889999999877522110               111111111                   35


Q ss_pred             EccCCCeEEE------ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEecc
Q 021160          100 YSNTSELLIS------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSD  172 (316)
Q Consensus       100 ~~~~~~~l~s------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~  172 (316)
                      |+|+++.++.      ..+..|++||+.++                +.. .+..+...  +..+.| +| ++..|+..+.
T Consensus       149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g----------------~~~-~~~~~~~~--~~~~~~-sp~dg~~l~~~~~  208 (396)
T 3c5m_A          149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETG----------------ELE-VIHQDTAW--LGHPIY-RPFDDSTVGFCHE  208 (396)
T ss_dssp             CCCCCSHHHHHHHHHTCCCEEEEEEETTTC----------------CEE-EEEEESSC--EEEEEE-ETTEEEEEEEEEC
T ss_pred             cCCCCcceeeeeeccCCCcceEEEEECCCC----------------cEE-eeccCCcc--cccceE-CCCCCCEEEEEec
Confidence            6788875443      24567999999876                333 33333433  888998 88 7887776654


Q ss_pred             C------CeEEEEeccCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCCCCCCCCCcccce
Q 021160          173 C------GHLFIWKKKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPPLPDNAEKIM  239 (316)
Q Consensus       173 d------g~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~  239 (316)
                      +      ..|++|++..++.. .+..+  ...+..++|+|+++.|+.++.+     +.|++||+.+++...+.....  .
T Consensus       209 ~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~  285 (396)
T 3c5m_A          209 GPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--C  285 (396)
T ss_dssp             SCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--E
T ss_pred             CCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--C
Confidence            3      46888998766533 33333  2357889999999987776544     449999998876332221111  1


Q ss_pred             eeeecCC-CCceeEEec----------------CCCeEEEEEecccCc
Q 021160          240 KANKQGR-EDHSRITLT----------------PDVIMHVLRLQRRQT  270 (316)
Q Consensus       240 ~~~~~~~-~~~~~~s~~----------------~d~~~~~w~~~~~~~  270 (316)
                      . ..+++ ++++++..+                .+..+.+|++.+++.
T Consensus       286 ~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          286 S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            2 34666 888777643                347899999876543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=5.4e-12  Score=104.57  Aligned_cols=198  Identities=9%  Similarity=0.109  Sum_probs=132.7

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      +...+.+++|+|++ ++++++..++.|.+||..+++..               .+...+...+.+++++++|+++++. .
T Consensus        43 ~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~i~~~~dg~l~v~~~~  106 (333)
T 2dg1_A           43 KGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK---------------RPFVSHKANPAAIKIHKDGRLFVCYLG  106 (333)
T ss_dssp             SCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE---------------EEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred             cCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEE---------------EEeeCCCCCcceEEECCCCcEEEEeCC
Confidence            34567899999998 77788888999999999877521               1111234679999999999987775 3


Q ss_pred             C----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc------CCeEEEEec
Q 021160          112 D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKK  181 (316)
Q Consensus       112 d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~~wd~  181 (316)
                      +    +.|.+||..++                .....+........+.++++ +|++.++++...      .+.|+.++.
T Consensus       107 ~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~l~~~~~  169 (333)
T 2dg1_A          107 DFKSTGGIFAATENGD----------------NLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSP  169 (333)
T ss_dssp             TSSSCCEEEEECTTSC----------------SCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred             CCCCCceEEEEeCCCC----------------EEEEEEccCccCCcccceEE-CCCCCEEEEeccccccCCCceEEEEeC
Confidence            4    58999998776                22222221111133889998 899988777654      356777777


Q ss_pred             cCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCC-CC-CCC--------CCCCcccceeeeecCCCCce
Q 021160          182 KGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMP-TD-FPP--------LPDNAEKIMKANKQGREDHS  250 (316)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~-~~-~~~--------~~~~~~~~~~~~~~~~~~~~  250 (316)
                      .+++... +..+...+..++|+|+++.+ ++.+.++.|.+|++.. +. ...        +.++ ..+ ....+.+++++
T Consensus       170 ~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~-~~i~~d~~G~l  246 (333)
T 2dg1_A          170 DFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGP-DSCCIDSDDNL  246 (333)
T ss_dssp             TSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEE-EEEEEBTTCCE
T ss_pred             CCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCC-CceEECCCCCE
Confidence            6555433 32233457889999999865 4555678999999864 22 111        1111 122 22335667888


Q ss_pred             eEEecCCCeEEEEEec
Q 021160          251 RITLTPDVIMHVLRLQ  266 (316)
Q Consensus       251 ~~s~~~d~~~~~w~~~  266 (316)
                      .++...++.|.+|+..
T Consensus       247 ~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          247 YVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEETTTEEEEECTT
T ss_pred             EEEEcCCCEEEEECCC
Confidence            8888788899999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=1.7e-12  Score=104.24  Aligned_cols=197  Identities=8%  Similarity=-0.031  Sum_probs=132.7

Q ss_pred             ceEEEEECCCCCcEEE-EEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160           36 RLNAIVIDPRNPNYFA-VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  114 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~-~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  114 (316)
                      ...++++++++ ++++ +...++.|.+|+..+....               .....+...+.++++.++|+++++..++.
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~   88 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT---------------VLPFNGLYQPQGLAVDGAGTVYVTDFNNR   88 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----E---------------ECCCCSCCSCCCEEECTTCCEEEEETTTE
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccc---------------eEeeCCcCCcceeEECCCCCEEEEcCCCE
Confidence            67899999998 6776 5477899999997654310               01012234567899999999777755889


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  194 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~  194 (316)
                      |.+||....                 ....+.... ...+..+++ ++++.++++...++.|.+|+..+...........
T Consensus        89 i~~~d~~~~-----------------~~~~~~~~~-~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B           89 VVTLAAGSN-----------------NQTVLPFDG-LNYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             EEEECTTCS-----------------CCEECCCCS-CSSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             EEEEeCCCc-----------------eEeeeecCC-cCCCcceEE-CCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence            999998764                 222222111 123789998 8899988887788999999866554333222333


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ..+..++++|+++++++...++.|.+|+......... ......+..++ ..+++.+.++...++.|.+|+....
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCC
Confidence            4678899999999877777788999999887652221 12223333444 5667788888888899999987654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=2.4e-12  Score=117.68  Aligned_cols=235  Identities=10%  Similarity=0.084  Sum_probs=146.3

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCC-----cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      +|...+..++|+|+| ++||.+..++     .|++||+.+++..              .....  ...+..++|+|||+.
T Consensus       122 ~~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------~~~~~--~~~~~~~~wspDg~~  184 (710)
T 2xdw_A          122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKEL--------------PDVLE--RVKFSCMAWTHDGKG  184 (710)
T ss_dssp             TSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEE--------------EEEEE--EECSCCEEECTTSSE
T ss_pred             CCCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCC--------------ccccc--CcccceEEEEeCCCE
Confidence            355578899999999 7777665433     8999999988731              11101  122567999999986


Q ss_pred             EEE-ecCCc----------------EEEEEcCCCCCCCCccCCccccccCCC--cceeeCCcCCceeeeEEEecCCCcEE
Q 021160          107 LIS-YNDEL----------------VYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYV  167 (316)
Q Consensus       107 l~s-~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l  167 (316)
                      |+. ..++.                |++|++.++                ..  ...+........+..+.| +|+|++|
T Consensus       185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~----------------~~~~~~v~~~~~~~~~~~~~~~-SpDg~~l  247 (710)
T 2xdw_A          185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD----------------QSEDILCAEFPDEPKWMGGAEL-SDDGRYV  247 (710)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC----------------GGGCEEEECCTTCTTCEEEEEE-CTTSCEE
T ss_pred             EEEEEECCccccccccccccCCCCEEEEEECCCC----------------cccceEEeccCCCCeEEEEEEE-cCCCCEE
Confidence            655 45544                999999776                21  122233222223778888 9999999


Q ss_pred             EEecc-----CCeEEEEeccC------Ce-eEEEeecCccceEEEEEcCCCCeEEEEeCC----CcEEEecCCCCC---C
Q 021160          168 MSGSD-----CGHLFIWKKKG------GK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTD---F  228 (316)
Q Consensus       168 ~~~~~-----dg~v~~wd~~~------~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~iwd~~~~~---~  228 (316)
                      +..+.     +..|++||+.+      ++ ....+..+...+.. .|+|++..|+..+.+    +.|.+|++.+..   .
T Consensus       248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             EEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            88765     67899999986      53 35566666665554 488999887655543    369999988763   2


Q ss_pred             CCCCCCcc-cceeeeecCCCCceeEEecCCCeEEE--EEecccCcceeE----------Eeeccccccc----ccCCCCe
Q 021160          229 PPLPDNAE-KIMKANKQGREDHSRITLTPDVIMHV--LRLQRRQTLAYR----------ERRYNAADFE----SDEEEGE  291 (316)
Q Consensus       229 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~d~~~~~--w~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~  291 (316)
                      ..+..+.. ..+....+.+++.++++...++..++  |++.+++.....          ..+++...+.    +....++
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  406 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI  406 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence            33433433 23333334556778888888876554  554343321111          2233333332    3345667


Q ss_pred             EEEEeccCCC
Q 021160          292 TYLLGFSDSD  301 (316)
Q Consensus       292 v~~~~~~~~~  301 (316)
                      +|.+|+..++
T Consensus       407 i~~~d~~tg~  416 (710)
T 2xdw_A          407 IYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTSSS
T ss_pred             EEEEECCCCc
Confidence            8888886654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=2.1e-12  Score=117.74  Aligned_cols=200  Identities=9%  Similarity=0.077  Sum_probs=127.7

Q ss_pred             CCccceEEEEECCCCCcEEEE-----EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~-----g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      +|...+.+++|+|+| ++||.     |+.+..|++||+.+++...            ...+ ...  ....++|+|+|+.
T Consensus       118 ~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------~~~~-~~~--~~~~~~wspDg~~  181 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK------------VDVI-EGG--KYATPKWTPDSKG  181 (695)
T ss_dssp             SSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS------------SCCB-SCC--TTCCCEECTTSSE
T ss_pred             CCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC------------Cccc-Ccc--cccceEEecCCCE
Confidence            466679999999999 77773     3445689999999887310            0011 111  1157899999996


Q ss_pred             EEE-ecCCc-------------EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc
Q 021160          107 LIS-YNDEL-------------VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  172 (316)
Q Consensus       107 l~s-~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  172 (316)
                      |+. ..|..             |++|++.++..              .....+........+.++.| +|+|++|+..+.
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~--------------~~~lv~~~~~~~~~~~~~~~-SpDG~~l~~~~~  246 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS--------------KDTVVHERTGDPTTFLQSDL-SRDGKYLFVYIL  246 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG--------------GCEEEECCCCCTTCEEEEEE-CTTSCCEEEEEE
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCCCch--------------hceEEEecCCCCEEEEEEEE-CCCCCEEEEEEe
Confidence            666 45554             99999987610              01122232222123788998 999999988876


Q ss_pred             CC----eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCCC---CCCCCCc-cc-cee
Q 021160          173 CG----HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF---PPLPDNA-EK-IMK  240 (316)
Q Consensus       173 dg----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~~---~~~~~~~-~~-~~~  240 (316)
                      ++    .|++++..+++ ...+..+...+....+ |++.+++...   .++.|.+||+.++..   ..+..+. .. +..
T Consensus       247 ~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          247 RGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS  324 (695)
T ss_dssp             ETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred             CCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence            66    77788766555 3445455556666667 4555544444   257899999977642   3333232 22 322


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEec
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      .. +. ++.++++...|+..++|.+.
T Consensus       325 ~~-~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          325 VS-IV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EE-EE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EE-EE-CCEEEEEEEECCEEEEEEEe
Confidence            33 33 66788889999998988765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=2.6e-12  Score=103.52  Aligned_cols=185  Identities=8%  Similarity=0.009  Sum_probs=134.0

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc-ccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLISYNDELVYLFEKNMGLGP  126 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~  126 (316)
                      ++|++++.++.|.+||.++++..              ..+ ..+. ..+.++.+.|+|++++ +.++.|+.||. ++   
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~--------------w~~-~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G---   65 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIV--------------WEY-PLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DG---   65 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEE--------------EEE-ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TS---
T ss_pred             cEEEeeCCCCEEEEEECCCCeEE--------------EEe-CCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CC---
Confidence            68999999999999999888732              222 1222 3577889999999888 45778999998 56   


Q ss_pred             CCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEEeec------CccceEE
Q 021160          127 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG------DRHVVNQ  199 (316)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~------~~~~v~~  199 (316)
                                   +.+..+..+.. ..+.++.+ .++|+++++.+. ++.+..++. +|+.+..+..      +......
T Consensus        66 -------------~~~W~~~~~~~-~~~~~~~~-~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           66 -------------RELWNIAAPAG-CEMQTARI-LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             -------------CEEEEEECCTT-CEEEEEEE-CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             -------------CEEEEEcCCCC-ccccccEE-CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence                         56677765421 23788888 899999999887 888888886 6887766642      2224556


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          200 LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       200 ~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      +++.++++++++...++.|..||.....+.++... ....... ..++++.+++...++.+..+|..+++.
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~-~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS-GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS-SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             ceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC-CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            77899999999999999999999983333333322 2222333 456788888888888888888776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=9.3e-13  Score=110.13  Aligned_cols=183  Identities=8%  Similarity=0.015  Sum_probs=125.9

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  115 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  115 (316)
                      .++.+++++.. .++++|+.++ +++|++....-... .....   +..... ..+.. |+.++|  ++.+|+.+.++.|
T Consensus        39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~-~~~~~---~~~~~~-~~lp~-V~~l~f--d~~~L~v~~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHIT-SDSTP---LTFKWE-KEIPD-VIFVCF--HGDQVLVSTRNAL  108 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHH-SSSCC---CCCSEE-EECTT-EEEEEE--ETTEEEEEESSEE
T ss_pred             cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhc-ccccc---ccceEE-eeCCC-eeEEEE--CCCEEEEEcCCcE
Confidence            68999999988 7888888874 66699764330000 00000   111111 22455 999999  8888888789999


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  195 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~  195 (316)
                      ++||+.+.                ........+...  +.++.+..|   .+++++.||.+.+||+.+++...    +..
T Consensus       109 ~v~dv~sl----------------~~~~~~~~~~~~--v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~  163 (388)
T 1xip_A          109 YSLDLEEL----------------SEFRTVTSFEKP--VFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQ  163 (388)
T ss_dssp             EEEESSST----------------TCEEEEEECSSC--EEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEE
T ss_pred             EEEEchhh----------------hccCccceeecc--eeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccC
Confidence            99999876                333444555544  778777433   28888999999999999887653    346


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCCCC---------CCcccceeeeecCCCCceeEEecC
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLP---------DNAEKIMKANKQGREDHSRITLTP  256 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~  256 (316)
                      .|++++|||+|  ++.|..||++++|++....   ..+++         +|...+..+. |..+..++++...
T Consensus       164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~-wl~~~~flv~y~~  233 (388)
T 1xip_A          164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT-ILSPQDFLAVFGN  233 (388)
T ss_dssp             SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE-ESSSSEEEEEEEC
T ss_pred             CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE-EecCCeEEEEEcC
Confidence            89999999999  6778889999999887765   22231         2455666666 5556677776443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.50  E-value=1.8e-11  Score=101.35  Aligned_cols=178  Identities=8%  Similarity=0.040  Sum_probs=117.2

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC----CcEEEEeCcCCcccCCCCCCCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD----EYARVYDIRKCHWYSPISSDTP   78 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d----g~v~~wd~~~~~~~~~~~~~~~   78 (316)
                      +.|.+||..+.+.......           +...+.+++++|++ +++++...+    +.|.+||..+++...       
T Consensus        66 ~~i~~~d~~~~~~~~~~~~-----------~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~-------  126 (333)
T 2dg1_A           66 GNIFKINPETKEIKRPFVS-----------HKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQD-------  126 (333)
T ss_dssp             CEEEEECTTTCCEEEEEEC-----------SSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEE-------
T ss_pred             CEEEEEeCCCCcEEEEeeC-----------CCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEE-------
Confidence            5677887766554332211           34579999999998 777776665    689999988765210       


Q ss_pred             ceecccccccCCCcccEEEEEEccCCCeEEEecC-------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC
Q 021160           79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYND-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  151 (316)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (316)
                         +.  . ...+...+..++++|+|+++++...       +.|..+|..++                 ....+......
T Consensus       127 ---~~--~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~  183 (333)
T 2dg1_A          127 ---II--E-DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-----------------TVTPIIQNISV  183 (333)
T ss_dssp             ---EE--C-SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-----------------CEEEEEEEESS
T ss_pred             ---EE--c-cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-----------------EEEEeecCCCc
Confidence               00  0 0123456889999999998877542       45666665443                 22223222222


Q ss_pred             ceeeeEEEecCCCcEE-EEeccCCeEEEEeccC-CeeEEE--------eecCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          152 QTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKG-GKLVRL--------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       152 ~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~~~-~~~~~~--------~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                        +..++| +|+++.+ ++.+.++.|++|++.+ ++.+..        +.++ ..+..++++++++++++...++.|.+|
T Consensus       184 --~~~i~~-~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          184 --ANGIAL-STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             --EEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             --ccceEE-CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEE
Confidence              778998 9999855 4556688999999863 332221        1122 367889999999988887778899999


Q ss_pred             cCCCC
Q 021160          222 APMPT  226 (316)
Q Consensus       222 d~~~~  226 (316)
                      |....
T Consensus       260 d~~g~  264 (333)
T 2dg1_A          260 NKRGY  264 (333)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence            98544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=8e-12  Score=100.65  Aligned_cols=178  Identities=6%  Similarity=-0.003  Sum_probs=127.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.|.+||..+.+....+....          ...+.++.+.|+| ++++  +.++.|..||. +++.+           
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~----------~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~-----------   68 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEK----------GWECNSVAATKAG-EILF--SYSKGAKMITR-DGREL-----------   68 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCT----------TCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEE-----------
T ss_pred             CCEEEEEECCCCeEEEEeCCCc----------cCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEE-----------
Confidence            4789999987777655554421          1357899999999 7777  35678999998 67632           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC----Cceee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVK  155 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~  155 (316)
                         ..+.......+.++.+.++|+++++. . ++.|..+|.+ +                +.+..+.....    .....
T Consensus        69 ---W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G----------------k~l~~~~~~~~~~~~~~~~~  128 (276)
T 3no2_A           69 ---WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G----------------EVLSKTEFETGIERPHAQFR  128 (276)
T ss_dssp             ---EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S----------------CEEEEEEECCSCSSGGGSCS
T ss_pred             ---EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C----------------CEEEEEeccCCCCccccccc
Confidence               12211223467889999999988874 4 6777777753 3                33333331110    01144


Q ss_pred             eEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          156 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .++. .++|+++++...++.|..||.+ |+.+..+... ..+.++...++++.+++++.++.|..+|..+++
T Consensus       129 ~v~~-~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          129 QINK-NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             CCEE-CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             CceE-CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            5566 8899999999999999999998 9999888764 355678888999999988888899999999766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.49  E-value=1e-11  Score=113.55  Aligned_cols=222  Identities=5%  Similarity=-0.022  Sum_probs=142.8

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCc----------------EEEEeCcCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY----------------ARVYDIRKC   67 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~----------------v~~wd~~~~   67 (316)
                      .|++||+.+.+..+....            ...+..++|+|++ +.|+.++.++.                |++|++.++
T Consensus       152 ~i~v~d~~tg~~~~~~~~------------~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~  218 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLE------------RVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD  218 (710)
T ss_dssp             EEEEEETTTTEEEEEEEE------------EECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred             EEEEEECCCCCCCccccc------------CcccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence            799999988765443221            1236689999999 78888777665                999999876


Q ss_pred             cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec-----CCcEEEEEcCC------CCCCCCccCCccc
Q 021160           68 HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-----DELVYLFEKNM------GLGPSPLSLSPED  135 (316)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-----d~~i~iwd~~~------~~~~~~~~~~~~~  135 (316)
                      +..       ..   .... ...|...+..+.|+|+|++|+. +.     +..|++||+.+      +.           
T Consensus       219 ~~~-------~~---~v~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----------  276 (710)
T 2xdw_A          219 QSE-------DI---LCAE-FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-----------  276 (710)
T ss_dssp             GGG-------CE---EEEC-CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-----------
T ss_pred             ccc-------ce---EEec-cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc-----------
Confidence            511       00   0001 1234556789999999996665 33     56899999976      31           


Q ss_pred             cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----CCeEEEEeccCCe--eEEEeecCcc--ceEEEEEcCCCC
Q 021160          136 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGK--LVRLMVGDRH--VVNQLEPHPHIP  207 (316)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~~wd~~~~~--~~~~~~~~~~--~v~~~~~~p~~~  207 (316)
                          .....+..+...  +.. .| +++|..|+..+.    .+.|.+||+.+++  ....+..|..  .+..++|++++.
T Consensus       277 ----~~~~~l~~~~~~--~~~-~~-s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  348 (710)
T 2xdw_A          277 ----LKWVKLIDNFEG--EYD-YV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (710)
T ss_dssp             ----CCCEEEECSSSS--CEE-EE-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             ----cceEEeeCCCCc--EEE-EE-eccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence                134555555543  443 35 678887776654    3469999998764  2344544543  678899998777


Q ss_pred             eEEEEeCCCc--EEEecCCCCC-CCCCCCCcccceeeeecCCCCc-eeEEec---CCCeEEEEEecccC
Q 021160          208 MFATCGIEKT--VKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLT---PDVIMHVLRLQRRQ  269 (316)
Q Consensus       208 ~l~s~~~d~~--i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~s~~---~d~~~~~w~~~~~~  269 (316)
                      ++++...|+.  |.+|++.+++ ...+..+...+.... +++++. ++++.+   ..+.+..||+.+++
T Consensus       349 lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYS-GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEE-CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEe-cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888888885  5667775554 444444444444443 455554 444433   34789999988765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=2.4e-10  Score=92.86  Aligned_cols=196  Identities=10%  Similarity=0.096  Sum_probs=134.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+.++++++++ +++++...++.|.+||.. ++..          .+   .. ..+...+..+++.++|.++++. .+
T Consensus        14 ~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~----------~~---~~-~~~~~~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A           14 DTGPYGITVSDKG-KVWITQHKANMISCINLD-GKIT----------EY---PL-PTPDAKVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             SCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEE----------EE---EC-SSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeE----------Ee---cC-CcccCceeeEEECCCCCEEEeCCCC
Confidence            3468899999998 677766667899999987 5421          11   11 1234578899999999988775 47


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-ee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~  191 (316)
                      +.|..||....                  ...+........+.++++ .+++.++++...++.|..||. +++.... ..
T Consensus        78 ~~i~~~~~~g~------------------~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~  137 (299)
T 2z2n_A           78 NKIGRITKKGI------------------IKEYTLPNPDSAPYGITE-GPNGDIWFTEMNGNRIGRITD-DGKIREYELP  137 (299)
T ss_dssp             TEEEEECTTSC------------------EEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             CeEEEECCCCc------------------EEEEeCCCcCCCceeeEE-CCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence            88999997522                  122221111123888998 889988888877899999998 5654432 23


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .....+..+++.|++.++++...++.|..||. +++...  +......+..+. ..+++.+.++...++.+..|+. ++
T Consensus       138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~-~g  213 (299)
T 2z2n_A          138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGIT-KGNDDALWFVEIIGNKIGRITT-SG  213 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEE-ECCCCCEEEEccCCceEEEECC-CC
Confidence            34457899999999988877777789999998 554322  222222333333 5567777777777888888887 44

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.45  E-value=2.6e-10  Score=92.64  Aligned_cols=194  Identities=7%  Similarity=0.041  Sum_probs=133.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+.++++++++ .++++...++.|..|+.. ++.          ..+.   . ......+..+++.++|+++++. .+
T Consensus        56 ~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~----------~~~~---~-~~~~~~~~~i~~~~~g~l~v~~~~~  119 (299)
T 2z2n_A           56 DAKVMCLTISSDG-EVWFTENAANKIGRITKK-GII----------KEYT---L-PNPDSAPYGITEGPNGDIWFTEMNG  119 (299)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE----------EEEE---C-SSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             cCceeeEEECCCC-CEEEeCCCCCeEEEECCC-CcE----------EEEe---C-CCcCCCceeeEECCCCCEEEEecCC
Confidence            3568899999988 777776667889999976 321          1111   1 1234568899999999987775 57


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-ee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~  191 (316)
                      +.|.+||. ++                .. ..+........+..+++ .+++.++++...++.|..||. +++.... +.
T Consensus       120 ~~i~~~d~-~g----------------~~-~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  179 (299)
T 2z2n_A          120 NRIGRITD-DG----------------KI-REYELPNKGSYPSFITL-GSDNALWFTENQNNAIGRITE-SGDITEFKIP  179 (299)
T ss_dssp             TEEEEECT-TC----------------CE-EEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             ceEEEECC-CC----------------CE-EEecCCCCCCCCceEEE-cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC
Confidence            88999998 43                11 22221111123888998 889988887777889999999 6765443 33


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .....+..+++++++.++++...++.|.+|+. ++....  +......+..+. ..+++++.++...++.|..|+.
T Consensus       180 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          180 TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT-AGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-ECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE-ECCCCCEEEeccCCceEEEECC
Confidence            34456889999999988777767889999999 554222  222223344444 5667777777777888899986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.45  E-value=1.3e-11  Score=100.65  Aligned_cols=194  Identities=12%  Similarity=0.036  Sum_probs=130.3

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      .....+++|+|++..+++++..++.|..|+..++ .          ..+      ..+...+.+++++++|+++++. .+
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------~~~------~~~~~~~~~l~~~~dg~l~v~~~~~   89 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------SPE------MHPSHHQNGHCLNKQGHLIACSHGL   89 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------EEE------ESSCSSEEEEEECTTCCEEEEETTT
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------EEE------ECCCCCcceeeECCCCcEEEEecCC
Confidence            3457799999999338888889999999998865 2          111      2234568899999999988876 46


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC--CceeeeEEEecCCCcEEEE----ec-------------cC
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMS----GS-------------DC  173 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~----~~-------------~d  173 (316)
                      +.|.+||..++                +..........  ...+..+++ +|+|+++++    |+             ..
T Consensus        90 ~~i~~~d~~~g----------------~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           90 RRLERQREPGG----------------EWESIADSFEGKKLNSPNDVCL-APDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             TEEEEECSTTC----------------CEEEEECEETTEECCCCCCEEE-CTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             CeEEEEcCCCC----------------cEEEEeeccCCCCCCCCCCEEE-CCCCCEEEECCccccccccccccccccCCC
Confidence            89999998766                22221111110  112678998 899998887    43             13


Q ss_pred             CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-CCCC----CCCCCCcccceeeeecCCCC
Q 021160          174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTDF----PPLPDNAEKIMKANKQGRED  248 (316)
Q Consensus       174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-~~~~----~~~~~~~~~~~~~~~~~~~~  248 (316)
                      +.|..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+|++. .+.+    ..+..+...+..+ .+.+++
T Consensus       153 ~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i-~~d~~G  229 (296)
T 3e5z_A          153 RWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL-RVDAGG  229 (296)
T ss_dssp             CEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE-EEBTTS
T ss_pred             cEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE-EECCCC
Confidence            467777665 543 3444555677899999999988777788999999986 3322    1111111222223 356777


Q ss_pred             ceeEEecCCCeEEEEEec
Q 021160          249 HSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       249 ~~~~s~~~d~~~~~w~~~  266 (316)
                      ++.++.  ++.|.+|+..
T Consensus       230 ~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          230 LIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CEEEEE--TTEEEEECTT
T ss_pred             CEEEEc--CCeEEEECCC
Confidence            777766  7889999865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.44  E-value=2.4e-10  Score=100.98  Aligned_cols=217  Identities=9%  Similarity=0.022  Sum_probs=143.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCc--CCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~--~~~~~~~~~~~~~~   79 (316)
                      +|.|.++|+.+.+....+...            ..+..+.|+|++ +++++++.|+.|.+||+.  +.+.          
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g------------~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~----------  232 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG------------YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTT----------  232 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS------------SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCE----------
T ss_pred             CCeEEEEECCCCeEEEEEeCC------------CCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcE----------
Confidence            478999999887765555432            246689999999 888888999999999995  5542          


Q ss_pred             eecccccccCCCcccEEEEEEc----cCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC---
Q 021160           80 DTFCPRHLIGKNNIHITGLAYS----NTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---  150 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  150 (316)
                          ...+..  ......++|+    |+|++++.+  .+++|.++|..+.                +.++.+.....   
T Consensus       233 ----v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~----------------~~~~~i~~~~~~~~  290 (567)
T 1qks_A          233 ----VAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL----------------EPKKIQSTRGMTYD  290 (567)
T ss_dssp             ----EEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC----------------CEEEEEECCEECTT
T ss_pred             ----eEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC----------------cEEEEEeccccccc
Confidence                122212  1235689999    699866653  5899999998776                45555442110   


Q ss_pred             ------CceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEE-eCCCcEEE
Q 021160          151 ------SQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKL  220 (316)
Q Consensus       151 ------~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~i  220 (316)
                            ...+..+.. ++++ .+++...+.|.|.++|....+.+.  .+. .......+.|+|++++++++ ..++.|.+
T Consensus       291 ~~~~~p~~rva~i~~-s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~V  368 (567)
T 1qks_A          291 EQEYHPEPRVAAILA-SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVV  368 (567)
T ss_dssp             TCCEESCCCEEEEEE-CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             cccccCCCceEEEEE-cCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEE
Confidence                  112667776 6654 456666778999999987654322  222 23456788999999996554 46789999


Q ss_pred             ecCCCCCCC-CCC-----CCcccceeeeecCCC-CceeEEec-CCCeEEEEEecc
Q 021160          221 WAPMPTDFP-PLP-----DNAEKIMKANKQGRE-DHSRITLT-PDVIMHVLRLQR  267 (316)
Q Consensus       221 wd~~~~~~~-~~~-----~~~~~~~~~~~~~~~-~~~~~s~~-~d~~~~~w~~~~  267 (316)
                      +|+.++++. .+.     .|...  ..++..++ +...++.. .++.|.+++...
T Consensus       369 iD~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          369 IDTKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EETTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EECCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            999987622 111     12211  12234554 44445443 568999999876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.43  E-value=3.4e-11  Score=100.98  Aligned_cols=198  Identities=6%  Similarity=-0.030  Sum_probs=116.4

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec--CCcEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~--dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|.+||+.+.+....+.......     .+......++|+|++ ++|+++..  ++.|.+||+.+++....        
T Consensus        81 ~~v~v~d~~t~~~~~~i~~~~~~~-----~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~--------  146 (361)
T 2oiz_A           81 DVVEVWDADKLTFEKEISLPPKRV-----QGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVED--------  146 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEECTTBC-----CBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEE--------
T ss_pred             CEEEEEECcCCcEEEEEEcCcccc-----ccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEE--------
Confidence            569999998777665555431110     012345689999999 77777753  68999999998873211        


Q ss_pred             ecccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCC-C----ccCCccc-------cccC-------
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPS-P----LSLSPED-------LQKR-------  139 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~-~----~~~~~~~-------~~~~-------  139 (316)
                       +    +..   .....+.+.|++ ..+++ +.||.+.+|++....... .    ..+....       .+..       
T Consensus       147 -~----i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  218 (361)
T 2oiz_A          147 -V----TAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS  218 (361)
T ss_dssp             -E----GGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB
T ss_pred             -E----ecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe
Confidence             0    100   111224455554 23333 456666666654310000 0    0000000       0000       


Q ss_pred             --CCcceeeCCcC---------------------CceeeeEEEecCCCcEEEEecc-----------CCeEEEEeccCCe
Q 021160          140 --EEPQVYSGHRN---------------------SQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKGGK  185 (316)
Q Consensus       140 --~~~~~~~~~~~---------------------~~~i~~~~~~~~~~~~l~~~~~-----------dg~v~~wd~~~~~  185 (316)
                        ..+..+.....                     +.....++| +|++..++++..           .+.|.+||+.+++
T Consensus       219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~-~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~  297 (361)
T 2oiz_A          219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL-HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ  297 (361)
T ss_dssp             TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE-ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE
T ss_pred             CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE-ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc
Confidence              00000000000                     000112677 888887776643           3589999999999


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      .+..+..+.  +..++|+|++++|++++. +.|.+||.+++
T Consensus       298 ~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          298 RVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            999998876  899999999999888886 99999999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.42  E-value=5.2e-12  Score=105.21  Aligned_cols=200  Identities=11%  Similarity=0.114  Sum_probs=124.3

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec---------------------------C
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---------------------------D   56 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~---------------------------d   56 (316)
                      .|.+||+.+.+..++...            .. +..++|+|++ +.|+.++.                           .
T Consensus        86 ~l~~~~~~~g~~~~l~~~------------~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  151 (347)
T 2gop_A           86 EIWVADLETLSSKKILEA------------KN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK  151 (347)
T ss_dssp             EEEEEETTTTEEEEEEEE------------SE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CE
T ss_pred             eEEEEECCCCceEEEEcC------------CC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence            466777766554433332            23 8899999999 67776653                           2


Q ss_pred             CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC------C-cEEEEEcCCCCCCCC
Q 021160           57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND------E-LVYLFEKNMGLGPSP  128 (316)
Q Consensus        57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d------~-~i~iwd~~~~~~~~~  128 (316)
                      ..|.+||+.+++.              ...+ .. . .+..++|+|+| +++++ .+      . ...+|.++++     
T Consensus       152 ~~l~~~d~~~~~~--------------~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-----  208 (347)
T 2gop_A          152 TTFWIFDTESEEV--------------IEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-----  208 (347)
T ss_dssp             EEEEEEETTTTEE--------------EEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-----
T ss_pred             ceEEEEECCCCeE--------------Eeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-----
Confidence            5688899987752              0111 11 2 56788999999 76665 22      2 3445544333     


Q ss_pred             ccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC--------CeEEEEeccCCeeEEEeecCccceEE-
Q 021160          129 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKLVRLMVGDRHVVNQ-  199 (316)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~~wd~~~~~~~~~~~~~~~~v~~-  199 (316)
                                  ....+..+ ..  +..  + +|+|++|+.++.+        ..|++||  +++.......+...+.. 
T Consensus       209 ------------~~~~l~~~-~~--~~~--~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~  268 (347)
T 2gop_A          209 ------------KEEKMFEK-VS--FYA--V-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQA  268 (347)
T ss_dssp             ------------EEEEEEEE-ES--EEE--E-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEE
T ss_pred             ------------ceEEeccC-cc--eee--E-CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCc
Confidence                        22333333 22  433  4 7899988877643        4788888  56655444556677886 


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeE-EEEEec
Q 021160          200 LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM-HVLRLQ  266 (316)
Q Consensus       200 ~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~-~~w~~~  266 (316)
                      +.|+ ++ ++++++.++.+++| +..++...+..+...+.... +++  .++++.+.++.. .+|.+.
T Consensus       269 ~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~-~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          269 KIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFD-VDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEE-ESS--SEEEEEECSSSCCEEEEES
T ss_pred             cEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeee-eeC--cEEEEEcCCCChHHheEeC
Confidence            8999 88 88899999999999 87444333333334444444 444  566666655543 777765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=2.3e-11  Score=100.65  Aligned_cols=250  Identities=7%  Similarity=-0.037  Sum_probs=152.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .+.|.+||..+.+....+......     .........+++.. + .++++...++.|.+||..+++..           
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~-----~~lg~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~-----------   77 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANG-----FKLGDVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEV-----------   77 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHS-----SCCBSCEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEE-----------
T ss_pred             CceEEEEECCCCEEhhhhHhhhcC-----cccCccceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEE-----------
Confidence            468899998776543222110000     01123457788754 3 56677777899999999988732           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC---CceeeeE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGV  157 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~  157 (316)
                         ..+ . .......++++++++++++. .++.|.+||..++                +....+.....   ......+
T Consensus        78 ---~~i-~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~----------------~~~~~i~~g~~~~~~~~p~~i  136 (328)
T 3dsm_A           78 ---GRI-T-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY----------------EITGYIECPDMDMESGSTEQM  136 (328)
T ss_dssp             ---EEE-E-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT----------------EEEEEEECTTCCTTTCBCCCE
T ss_pred             ---EEc-C-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC----------------eEEEEEEcCCccccCCCcceE
Confidence               222 1 13457889999998777775 6999999999877                44444443220   0025667


Q ss_pred             EEecCCCcEEEEec-cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC----------CcEEEecCCCC
Q 021160          158 NFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----------KTVKLWAPMPT  226 (316)
Q Consensus       158 ~~~~~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----------~~i~iwd~~~~  226 (316)
                      ++ . ++.++++.. .++.|.++|+.+++.+..+... .....++++|++++++++..+          +.|.++|..+.
T Consensus       137 ~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          137 VQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             EE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred             EE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence            76 2 344444443 4889999999999988887653 345679999999987776654          78999999877


Q ss_pred             CCC-CCCCC-cccceeeeecCCCCceeEEecCCCeEEEEEecccCcce--eEEe-ecccccccccCCCCeEEEEe
Q 021160          227 DFP-PLPDN-AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA--YRER-RYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       227 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~  296 (316)
                      ++. .+... ......++ +++++..+.....  .+.+||..+++...  +... ......++.+.+++.+|+.+
T Consensus       214 ~v~~~~~~~~g~~p~~la-~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          214 TVEKQFKFKLGDWPSEVQ-LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEEEEECCTTCCCEEEE-ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             eEEEEEecCCCCCceeEE-EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            622 22111 12233444 6666666655544  78899987765321  1110 11122233444556677666

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=3e-10  Score=93.07  Aligned_cols=224  Identities=11%  Similarity=0.049  Sum_probs=138.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      |.|.+||..+.+... +.....      .++...+.+++++++ + +++++.. ...|.+||.. ++....         
T Consensus        46 ~~i~~~d~~~g~~~~-~~~~~~------~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~---------  106 (314)
T 1pjx_A           46 GEILRIDLKTGKKTV-ICKPEV------NGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEI---------  106 (314)
T ss_dssp             CEEEEECTTTCCEEE-EECCEE------TTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEEC---------
T ss_pred             CEEEEEeCCCCcEEE-EEeccc------CCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEE---------
Confidence            567888876554322 211000      123456899999998 6 5555444 4478899988 652110         


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cC---------------CcEEEEEcCCCCCCCCccCCccccccCCCccee
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-ND---------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY  145 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (316)
                       ............+.++++.++|+++++. .+               +.|..|+.. +                +. ..+
T Consensus       107 -~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----------------~~-~~~  167 (314)
T 1pjx_A          107 -AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----------------QM-IQV  167 (314)
T ss_dssp             -CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S----------------CE-EEE
T ss_pred             -EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C----------------CE-EEe
Confidence             0000001122457899999999977775 33               467777654 3                22 222


Q ss_pred             eCCcCCceeeeEEEec----CCCcEEE-EeccCCeEEEEecc-CCee-----EEEeecCc-cceEEEEEcCCCCeEEEEe
Q 021160          146 SGHRNSQTVKGVNFFG----PNDEYVM-SGSDCGHLFIWKKK-GGKL-----VRLMVGDR-HVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       146 ~~~~~~~~i~~~~~~~----~~~~~l~-~~~~dg~v~~wd~~-~~~~-----~~~~~~~~-~~v~~~~~~p~~~~l~s~~  213 (316)
                      ..+...  ...+++ +    ++++.++ +...++.|.+|++. +++.     ...+..+. ..+..++++++++++++..
T Consensus       168 ~~~~~~--~~~i~~-~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          168 DTAFQF--PNGIAV-RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEESS--EEEEEE-EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             ccCCCC--cceEEE-ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            222222  677888 8    8886554 44568999999986 4542     23333343 5678899999999888877


Q ss_pred             CCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCc-eeEEecCCCeEEEEEeccc
Q 021160          214 IEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       214 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++.|.+||..+++ ...+..+...+..+. +.++++ +.++...++.|..+++...
T Consensus       245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~-~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLH-FKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEE-ECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCEEEEEcCCCCcEeEEEeCCCCCceeEE-ECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            78899999998554 333333334444455 467777 5666667788888887654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=3.7e-11  Score=110.34  Aligned_cols=199  Identities=12%  Similarity=0.119  Sum_probs=123.5

Q ss_pred             CccceEEEEECCCCCcEEEEEecC-----CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  107 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  107 (316)
                      |...+..++|+|+| ++||.++.+     ..|++||+.+++..              ...  .+...+..++|+|+ +.|
T Consensus       161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~--------------~~~--~~~~~~~~~~wspD-~~l  222 (741)
T 1yr2_A          161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPL--------------ADE--LKWVKFSGLAWLGN-DAL  222 (741)
T ss_dssp             --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEE--------------EEE--EEEEESCCCEESTT-SEE
T ss_pred             CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCC--------------Ccc--CCCceeccEEEECC-CEE
Confidence            44578899999999 777766543     35999999988631              100  01112357899999 855


Q ss_pred             EE-ecCC--------------cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc
Q 021160          108 IS-YNDE--------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  172 (316)
Q Consensus       108 ~s-~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  172 (316)
                      +. ..++              .|++|++.++..              .....+........+.++.| +|+|++|+..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--------------~~~lv~~~~~~~~~~~~~~~-SpDG~~l~~~~~  287 (741)
T 1yr2_A          223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS--------------ADQPVFATPELPKRGHGASV-SSDGRWVVITSS  287 (741)
T ss_dssp             EEEECCCC--------CCCCCEEEEEETTSCGG--------------GCEEEECCTTCTTCEEEEEE-CTTSCEEEEEEE
T ss_pred             EEEEecCcccccccccCCCCCEEEEEECCCCch--------------hCEEEeccCCCCeEEEEEEE-CCCCCEEEEEEE
Confidence            55 4433              388999876510              01122332222123788888 999999888775


Q ss_pred             CC-----eEEEEeccCC--eeEEEeecCccceEEEEEcCCCCeEEEEeCC----CcEEEecCCCC--CCCCCCCCcccce
Q 021160          173 CG-----HLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPT--DFPPLPDNAEKIM  239 (316)
Q Consensus       173 dg-----~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~iwd~~~~--~~~~~~~~~~~~~  239 (316)
                      ++     .|++||+.++  +....+..+...+.... +|+++.|+..+.+    +.|.+|++.+.  ....+..+....+
T Consensus       288 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l  366 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL  366 (741)
T ss_dssp             CTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE
T ss_pred             ccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE
Confidence            44     8999999887  31455555555555553 4888887776653    45999998774  2222222222222


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEec
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ....+. ++.++++...++..++|.+.
T Consensus       367 ~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          367 ESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            222222 56678888889988888765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=2.9e-11  Score=110.26  Aligned_cols=223  Identities=7%  Similarity=-0.081  Sum_probs=134.3

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCc-------------EEEEeCcCCcc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY-------------ARVYDIRKCHW   69 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~-------------v~~wd~~~~~~   69 (316)
                      ..|++||+.+.+.......   .        ......++|+|+| +.|+.++.|..             |++|++.+++.
T Consensus       147 ~~i~v~dl~tg~~~~~~~~---~--------~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~  214 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSKVDVI---E--------GGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS  214 (695)
T ss_dssp             CEEEEEETTTCCBCSSCCB---S--------CCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred             EEEEEEECCCCCCcCCccc---C--------cccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence            4789999987764310001   0        1112679999999 78888887765             99999987751


Q ss_pred             cCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCC----cEEEEEcCCCCCCCCccCCccccccCCCcce
Q 021160           70 YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQV  144 (316)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  144 (316)
                      .       ..   .... ...|...+..+.|+|+|++|+. +.++    .|++|+..++                 ....
T Consensus       215 ~-------~~---lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----------------~~~~  266 (695)
T 2bkl_A          215 K-------DT---VVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----------------DFRL  266 (695)
T ss_dssp             G-------CE---EEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----------------SCEE
T ss_pred             h-------ce---EEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----------------ceEE
Confidence            1       00   0111 1334567889999999996665 4444    5666655443                 3344


Q ss_pred             eeCCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEeccCCee---EEEeecC-ccceEEEEEcCCCCeEEEEeCCCc
Q 021160          145 YSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKL---VRLMVGD-RHVVNQLEPHPHIPMFATCGIEKT  217 (316)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~~~~~---~~~~~~~-~~~v~~~~~~p~~~~l~s~~~d~~  217 (316)
                      +..+...  +....+ + ++.+++...   .++.|++||+.+++.   ...+..+ ...+..++|+ ++.++++...|+.
T Consensus       267 l~~~~~~--~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          267 LVKGVGA--KYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             EEECSSC--CEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             eecCCCc--eEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            5544433  555555 4 555444443   268899999987653   3333333 4467888888 6677888889998


Q ss_pred             EEEecCC--CCCCCCCCCC-cccceeeeecCCCCceeE-E---ecCCCeEEEEEecccCcc
Q 021160          218 VKLWAPM--PTDFPPLPDN-AEKIMKANKQGREDHSRI-T---LTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       218 i~iwd~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-s---~~~d~~~~~w~~~~~~~~  271 (316)
                      .+||.+.  .+....+..+ ...+.... +++++..++ +   ....+.+.+||+.+++..
T Consensus       342 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTVQLPGVGAASNLM-GLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEEEETTCCEEEECCCSSSSEECCCB-SCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEEEeCCCCeeEEecCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            8887544  3333334323 23333333 455655444 3   333478999998876543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.36  E-value=2.9e-10  Score=96.86  Aligned_cols=197  Identities=11%  Similarity=0.013  Sum_probs=126.9

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  113 (316)
                      .....++|++++ +++++...++.|++||..++++.               .+......+ . ++|+++++.|+.+ .++
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~---------------~~~~~~~~~-~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVT---------------TVHPGFKGG-K-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEE---------------EEEETCCBC-B-CEECTTSSEEEEEBSST
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEE---------------EeeccCCCC-c-eeEecCCCcEEEEecCC
Confidence            457899999998 77777777899999999877631               111111222 3 8999999866654 434


Q ss_pred             --cEEEEEcCCCCCCCCccCCccccccCCCccee---eC-CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          114 --LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       114 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                        .|.+++....                .....+   .. ..  ..+.++++ +|++..|+.+..++.|+.||..++...
T Consensus       193 ~~~I~~~d~~~~----------------~~~~~~g~~~~~~~--~~p~~iav-~p~~g~lyv~d~~~~I~~~d~~~~~~~  253 (409)
T 3hrp_A          193 THTVYVYMKASG----------------WAPTRIGQLGSTFS--GKIGAVAL-DETEEWLYFVDSNKNFGRFNVKTQEVT  253 (409)
T ss_dssp             TCEEEEEEGGGT----------------TCEEEEEECCTTSC--SCCCBCEE-CTTSSEEEEECTTCEEEEEETTTCCEE
T ss_pred             CceEEEEEcCCC----------------ceeEEeeeccchhc--CCcEEEEE-eCCCCeEEEEECCCcEEEEECCCCCEE
Confidence              7899988765                222222   11 22  23788998 885555555777889999999877643


Q ss_pred             EE----eecCccce-E-EEEEcCC-CCeEEEEeCCCcEEEecCCCCCCCCCCCC---------------cccceeeeecC
Q 021160          188 RL----MVGDRHVV-N-QLEPHPH-IPMFATCGIEKTVKLWAPMPTDFPPLPDN---------------AEKIMKANKQG  245 (316)
Q Consensus       188 ~~----~~~~~~~v-~-~~~~~p~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~  245 (316)
                      ..    ..++...- . .++|+|+ +.++++-...+.|+.|+..... ..+.++               ......++ +.
T Consensus       254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia-~d  331 (409)
T 3hrp_A          254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMT-VD  331 (409)
T ss_dssp             EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEE-EC
T ss_pred             EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEE-Ee
Confidence            22    22222222 3 8999995 5556676778899999976532 111111               01122333 66


Q ss_pred             CCCceeEEec-CCCeEEEEEecccCc
Q 021160          246 REDHSRITLT-PDVIMHVLRLQRRQT  270 (316)
Q Consensus       246 ~~~~~~~s~~-~d~~~~~w~~~~~~~  270 (316)
                      ++++++++-+ .+..|+.|++..+..
T Consensus       332 ~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          332 EDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            7788888888 899999999766543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=2.3e-11  Score=101.73  Aligned_cols=133  Identities=8%  Similarity=-0.012  Sum_probs=99.5

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecC
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  112 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  112 (316)
                      +.. |+.++|  ++ ++|+++ .++.|++||+.+...              .... ..|...+.++.+.+.. +++...|
T Consensus        87 lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~~--------------~~~~-~~~~~~v~~i~~~~p~-~av~~~d  145 (388)
T 1xip_A           87 IPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELSE--------------FRTV-TSFEKPVFQLKNVNNT-LVILNSV  145 (388)
T ss_dssp             CTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTTC--------------EEEE-EECSSCEEEEEECSSE-EEEEETT
T ss_pred             CCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhhc--------------cCcc-ceeecceeeEEecCCC-EEEEECC
Confidence            456 999999  67 788888 889999999986541              1111 3345567787776653 5555789


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee--EEEe
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM  190 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~--~~~~  190 (316)
                      |.|.+||+..+                ....    +...  |.+++| +|+|  ++.|..||.+++|+...++.  ...+
T Consensus       146 G~L~v~dl~~~----------------~~~~----~~~~--Vs~v~W-SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          146 NDLSALDLRTK----------------STKQ----LAQN--VTSFDV-TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             SEEEEEETTTC----------------CEEE----EEES--EEEEEE-CSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEccCC----------------cccc----ccCC--ceEEEE-cCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence            99999999876                2221    2333  999999 9999  67888999999999987775  5556


Q ss_pred             ------e---cCccceEEEEEcCCCCeEEE
Q 021160          191 ------V---GDRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       191 ------~---~~~~~v~~~~~~p~~~~l~s  211 (316)
                            .   +|...|.+++|.+++.++++
T Consensus       201 ~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          201 SLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence                  2   36788999999999888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=4.2e-09  Score=85.45  Aligned_cols=194  Identities=6%  Similarity=0.071  Sum_probs=130.4

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+.++++++++ +++++...++.|..||.. ++..          .+   .. ......+..+++.++|+++++. .+
T Consensus        61 ~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~----------~~---~~-~~~~~~~~~i~~~~~g~l~v~~~~~  124 (300)
T 2qc5_A           61 DAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFT----------EY---PL-PQPDSGPYGITEGLNGDIWFTQLNG  124 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----------EE---EC-SSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeE----------Ee---cC-CCCCCCCccceECCCCCEEEEccCC
Confidence            3568899999988 677776667889999987 5421          11   11 1223568899999999987775 47


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-ee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~  191 (316)
                      +.|..+|.. +                +.. .+........+..+++ .+++++.++...++.|..++. +++.... +.
T Consensus       125 ~~i~~~~~~-g----------------~~~-~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  184 (300)
T 2qc5_A          125 DRIGKLTAD-G----------------TIY-EYDLPNKGSYPAFITL-GSDNALWFTENQNNSIGRITN-TGKLEEYPLP  184 (300)
T ss_dssp             TEEEEECTT-S----------------CEE-EEECSSTTCCEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             CeEEEECCC-C----------------CEE-EccCCCCCCCceeEEE-CCCCCEEEEecCCCeEEEECC-CCcEEEeeCC
Confidence            889999986 4                222 2221111123788998 899997777777889999998 5654432 22


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC--CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .+...+..+++++++.++++....+.|.+|+. .+...  .+......+..+. ..+++++.++...++.|..++.
T Consensus       185 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          185 TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAIT-AGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-ECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEE-ECCCCCEEEeccCCCeEEEECC
Confidence            33456889999999987777666778999998 33321  1222223333444 5667777777777788888886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.31  E-value=8.7e-10  Score=90.29  Aligned_cols=201  Identities=10%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             ceEEEEECCCCCcEEEE-------EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC-CCeE
Q 021160           36 RLNAIVIDPRNPNYFAV-------GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL  107 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~-------g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  107 (316)
                      ...+++|++++ .++++       +..++.|.+||..+++..          .+..... .++...+..++++++ ++++
T Consensus        19 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~----------~~~~~~~-~~~~~~~~~i~~~~~~g~l~   86 (314)
T 1pjx_A           19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------VICKPEV-NGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEE----------EEECCEE-TTEECCEEEEEECSSSSEEE
T ss_pred             CccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEE----------EEEeccc-CCCCCCCceEEEecCCCcEE
Confidence            56799999988 77777       577899999998877521          1111000 124467889999999 8877


Q ss_pred             EEecCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCC--cCCceeeeEEEecCCCcEEEEeccC-----------
Q 021160          108 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGH--RNSQTVKGVNFFGPNDEYVMSGSDC-----------  173 (316)
Q Consensus       108 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d-----------  173 (316)
                      ++.....|.+||.. +                +.... ....  .....+.++++ +++|.++++...+           
T Consensus        87 v~~~~~~l~~~d~~-g----------------~~~~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           87 VADMRLGLLVVQTD-G----------------TFEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEETTTEEEEEETT-S----------------CEEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             EEECCCCEEEEeCC-C----------------CEEEEEeccCCCccccCCcCEEE-CCCCCEEEEecCcccccccccccc
Confidence            77655589999987 5                22111 1110  11123788998 8999888777655           


Q ss_pred             ----CeEEEEeccCCeeEEEeecCccceEEEEEc----CCCCeE-EEEeCCCcEEEecCC-CCC------CCCCCCCc-c
Q 021160          174 ----GHLFIWKKKGGKLVRLMVGDRHVVNQLEPH----PHIPMF-ATCGIEKTVKLWAPM-PTD------FPPLPDNA-E  236 (316)
Q Consensus       174 ----g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~----p~~~~l-~s~~~d~~i~iwd~~-~~~------~~~~~~~~-~  236 (316)
                          +.|..++.. ++..... .+......++|+    |+++.+ ++...++.|.+|++. .+.      ...+..+. .
T Consensus       149 ~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             cCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence                578888876 5543332 333456889999    999764 454567899999976 332      11222222 2


Q ss_pred             cceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ....+ .+.+++++.++...++.|.+|+..+++
T Consensus       227 ~p~~i-~~d~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          227 GADGM-DFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEEE-EEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             CCCce-EECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence            23233 356778888888788899999977443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=8.4e-09  Score=83.66  Aligned_cols=194  Identities=9%  Similarity=0.062  Sum_probs=132.3

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+.++++++++ +++++...++.|.+||.. ++..          .+   .+ ......+..+++.++++++++. .+
T Consensus        19 ~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~----------~~---~~-~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           19 DSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIK----------EF---EV-PTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----------EE---EC-SSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceE----------EE---EC-CCCCCcceeEEECCCCCEEEEecCC
Confidence            3467899999998 777777678999999987 5421          11   11 2233568899999999977775 47


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-ee
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  191 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~  191 (316)
                      +.|..||.. +                +. ..+........+.++++ .+++.++++...++.|..++.. ++.... +.
T Consensus        83 ~~v~~~d~~-g----------------~~-~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  142 (300)
T 2qc5_A           83 NKIGKLSKK-G----------------GF-TEYPLPQPDSGPYGITE-GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP  142 (300)
T ss_dssp             TEEEEECTT-S----------------CE-EEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             CeEEEECCC-C----------------Ce-EEecCCCCCCCCccceE-CCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence            889999987 4                22 22222111133889998 8899888887778899999987 665422 33


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .....+..+++.++++++++...++.|..++. .++...  +......+..+. ..+++.+.++....+.+.+++.
T Consensus       143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGIT-SGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEE-ECCCCCEEEEccCCCEEEEEcC
Confidence            33457889999999997777666788999998 444211  222222333333 5567777777777788888876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.27  E-value=3.8e-09  Score=85.98  Aligned_cols=176  Identities=7%  Similarity=0.062  Sum_probs=109.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+.+++++|++ +++++ . +..|.+||..+++...          +... ........+..+++.|+|+++++. ..
T Consensus        53 ~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~----------~~~~-~~~~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           53 DAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVV----------LATV-DNDKKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             SSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEE----------EEEC-CTTCSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             CCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEE----------EEec-CCCCCCCCCCCEEECCCCCEEEecCCc
Confidence            4578999999999 65544 3 5689999998775311          1000 001123457899999999977764 21


Q ss_pred             ---------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE-EEeccCCeEEEEec-
Q 021160          113 ---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK-  181 (316)
Q Consensus       113 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~-  181 (316)
                               ..-.+|.+...                .....+......  ...++| +|+++.+ ++.+.++.|..|++ 
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~----------------g~~~~~~~~~~~--pngi~~-spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPD----------------HHVKKYFDQVDI--SNGLDW-SLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTT----------------SCEEEEEEEESB--EEEEEE-CTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             ccccccccCCCcEEEEEECC----------------CCEEEEeecccc--ccceEE-cCCCCEEEEecCCCCcEEEEecc
Confidence                     23345554422                112222222222  678998 9999866 55566889999987 


Q ss_pred             -cCCeeE-----EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeee
Q 021160          182 -KGGKLV-----RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN  242 (316)
Q Consensus       182 -~~~~~~-----~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  242 (316)
                       .++...     ..+..+...+..+++.++|++.++....+.|..||..+++ +..+..+...+..++
T Consensus       180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             TTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred             CCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEE
Confidence             455432     2233344567899999999888877778889999998665 333332323343443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.26  E-value=2.9e-09  Score=86.73  Aligned_cols=226  Identities=9%  Similarity=0.008  Sum_probs=139.8

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  115 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  115 (316)
                      -.-+..|+|++..++++...++.|..||..+++..          .       ......+.+++++++|+++++. +..|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------~-------~~~~~~~~~i~~~~dG~l~v~~-~~~l   75 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----------R-------VTMDAPVSSVALRQSGGYVATI-GTKF   75 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----------E-------EECSSCEEEEEEBTTSSEEEEE-TTEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----------E-------EeCCCceEEEEECCCCCEEEEE-CCeE
Confidence            34588999976477788888899999999876521          0       1123568899999999966665 6789


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCC---cCCceeeeEEEecCCCcEEEEecc-----------CCeEEEEec
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKK  181 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~-----------dg~v~~wd~  181 (316)
                      .+||..++                +. ..+...   .....+.++++ +++|+++++...           .+.|+.++.
T Consensus        76 ~~~d~~~g----------------~~-~~~~~~~~~~~~~~~~di~~-d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           76 CALNWKEQ----------------SA-VVLATVDNDKKNNRFNDGKV-DPAGRYFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EEEETTTT----------------EE-EEEEECCTTCSSEEEEEEEE-CTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             EEEECCCC----------------cE-EEEEecCCCCCCCCCCCEEE-CCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence            99998765                22 222211   11123788998 899997765432           234555554


Q ss_pred             cCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCC--CCCC------CCCCCCcccceeeeecCCCCceeE
Q 021160          182 KGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPM--PTDF------PPLPDNAEKIMKANKQGREDHSRI  252 (316)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  252 (316)
                      . ++... +..+....+.++|+|+++.| ++.+.++.|.+|++.  ++.+      ..+.........+ ...+++++.+
T Consensus       138 ~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~-~~d~~G~lwv  214 (297)
T 3g4e_A          138 D-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM-CIDAEGKLWV  214 (297)
T ss_dssp             T-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE-EEBTTSCEEE
T ss_pred             C-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee-EECCCCCEEE
Confidence            3 44332 33333456889999999875 555667899999863  4332      1122111222223 3567788888


Q ss_pred             EecCCCeEEEEEecccCcceeEEee-ccccccccc-CCCCeEEEEeccCC
Q 021160          253 TLTPDVIMHVLRLQRRQTLAYRERR-YNAADFESD-EEEGETYLLGFSDS  300 (316)
Q Consensus       253 s~~~d~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~  300 (316)
                      +....+.|..|+..+++........ .....++.+ .+..++|+.....+
T Consensus       215 a~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG  264 (297)
T ss_dssp             EEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred             EEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence            8888888999988766544333221 223334433 44456777766544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.26  E-value=1.1e-09  Score=93.23  Aligned_cols=181  Identities=10%  Similarity=0.012  Sum_probs=112.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      +.|++||+.+.........            ..... ++|+|++ ..++++..++  .|.+++...+...         .
T Consensus       152 ~~I~~id~~~g~~~~~~~~------------~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~---------~  208 (409)
T 3hrp_A          152 PRVRLISVDDNKVTTVHPG------------FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAP---------T  208 (409)
T ss_dssp             TEEEEEETTTTEEEEEEET------------CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCE---------E
T ss_pred             CcEEEEECCCCEEEEeecc------------CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCcee---------E
Confidence            4677888765544323221            11223 8999998 6777777655  7888887654310         0


Q ss_pred             ecccccccCCCcccEEEEEEcc-CCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCccee-----eCCcCCcee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTV  154 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i  154 (316)
                      .  ...........+.+++++| ++.++++..++.|+.||..++                . ...+     .+.....+.
T Consensus       209 ~--~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~----------------~-~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          209 R--IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ----------------E-VTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             E--EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC----------------C-EEEEEECCCCSCCCCSSC
T ss_pred             E--eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC----------------C-EEEEecccccCCCCCCcc
Confidence            0  0000011234567899999 556666556889999998765                2 2222     111111001


Q ss_pred             eeEEEecC-CCcEEEEeccCCeEEEEeccCCeeEEEeecCc---------------cceEEEEEcCCCCeEEEEe-CCCc
Q 021160          155 KGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR---------------HVVNQLEPHPHIPMFATCG-IEKT  217 (316)
Q Consensus       155 ~~~~~~~~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---------------~~v~~~~~~p~~~~l~s~~-~d~~  217 (316)
                      ..++| +| ++.++++-..++.|+.|+....  +..+.++.               .....++++|+++++++-. .++.
T Consensus       270 ~~ia~-~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~  346 (409)
T 3hrp_A          270 PYLIY-YFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC  346 (409)
T ss_dssp             CEEEE-ETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred             ccEEE-eCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence            28998 78 5666777777899999997643  33333322               3478899999999888877 7899


Q ss_pred             EEEecCCCCCC
Q 021160          218 VKLWAPMPTDF  228 (316)
Q Consensus       218 i~iwd~~~~~~  228 (316)
                      |+.|++..+.+
T Consensus       347 I~~~~~~~G~v  357 (409)
T 3hrp_A          347 LRKLDILDGYV  357 (409)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCEE
Confidence            99999766553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.25  E-value=2.3e-09  Score=94.73  Aligned_cols=190  Identities=9%  Similarity=-0.009  Sum_probs=130.3

Q ss_pred             CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcC
Q 021160           43 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKN  121 (316)
Q Consensus        43 ~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~  121 (316)
                      +|.+ .++++...++.|.++|..++++.              ..+..  ...+..+.|+|+|+++.. +.|+.|.+||+.
T Consensus       164 d~~~-~~~V~~~~~~~V~viD~~t~~v~--------------~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          164 DLEN-LFSVTLRDAGQIALIDGSTYEIK--------------TVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             CGGG-EEEEEETTTTEEEEEETTTCCEE--------------EEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCCc-eEEEEeCCCCeEEEEECCCCeEE--------------EEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            3444 56777778999999999988732              22211  224568999999996665 578999999995


Q ss_pred             --CCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec----CCCcEEEEecc-CCeEEEEeccCCeeEEEeecC-
Q 021160          122 --MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG----PNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGD-  193 (316)
Q Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~-  193 (316)
                        +.                +.+..+....   ....++| +    |+|+++++++. ++.+.++|..+.+.+..+... 
T Consensus       227 ~~t~----------------~~v~~i~~G~---~P~~ia~-s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          227 MKEP----------------TTVAEIKIGS---EARSIET-SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             SSSC----------------CEEEEEECCS---EEEEEEE-CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             CCCC----------------cEeEEEecCC---CCceeEE-ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence              44                4455555422   2678998 7    69998888775 589999999999988876532 


Q ss_pred             ---------c-cceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCCCCceeE-EecCCC
Q 021160          194 ---------R-HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRI-TLTPDV  258 (316)
Q Consensus       194 ---------~-~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~  258 (316)
                               . ..+..+..+++++. ++....+|.|.++|.....   ...+. ..... ....+.+++++++ +...++
T Consensus       287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~-~d~~~~pdgr~~~va~~~sn  364 (567)
T 1qks_A          287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFL-HDGGLDGSHRYFITAANARN  364 (567)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSE-EEEEECTTSCEEEEEEGGGT
T ss_pred             cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccc-cCceECCCCCEEEEEeCCCC
Confidence                     1 25778888888776 5555677999999987643   11110 11111 2223677777765 455679


Q ss_pred             eEEEEEecccCcc
Q 021160          259 IMHVLRLQRRQTL  271 (316)
Q Consensus       259 ~~~~w~~~~~~~~  271 (316)
                      .|.++|+.+++..
T Consensus       365 ~V~ViD~~t~kl~  377 (567)
T 1qks_A          365 KLVVIDTKEGKLV  377 (567)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             eEEEEECCCCcEE
Confidence            9999999877543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.23  E-value=6.2e-09  Score=85.91  Aligned_cols=223  Identities=9%  Similarity=-0.010  Sum_probs=135.0

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEE
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY  116 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~  116 (316)
                      ..+..|+|++..++++...++.|..||..+++..          .     .  .....+.+++++++|+++++..+ .|.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------~-----~--~~~~~v~~i~~~~dg~l~v~~~~-gl~  112 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----------V-----H--ALPFMGSALAKISDSKQLIASDD-GLF  112 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----------E-----E--ECSSCEEEEEEEETTEEEEEETT-EEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----------E-----E--ECCCcceEEEEeCCCeEEEEECC-CEE
Confidence            4678999986577788878899999999876521          0     1  11346889999999998877644 499


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCc---CCceeeeEEEecCCCcEEEEecc------CCeEEEEeccCCeeE
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLV  187 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~------dg~v~~wd~~~~~~~  187 (316)
                      +||..++                +. ..+....   ....+.++++ +++|+++++...      .+.|+.++  +++..
T Consensus       113 ~~d~~~g----------------~~-~~~~~~~~~~~~~~~~~i~~-d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~  172 (326)
T 2ghs_A          113 LRDTATG----------------VL-TLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVA--KGKVT  172 (326)
T ss_dssp             EEETTTC----------------CE-EEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE
T ss_pred             EEECCCC----------------cE-EEEeeCCCCCCCCCCCCEEE-CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE
Confidence            9998776                22 2222111   1123788998 899987765442      24566666  56543


Q ss_pred             EEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCC--CC-CCC------CCCCCcccceeeeecCCCCceeEEecCC
Q 021160          188 RLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPM--PT-DFP------PLPDNAEKIMKANKQGREDHSRITLTPD  257 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~--~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~d  257 (316)
                      . +..+......++|+|+++.++ +.+.++.|.+|++.  ++ .+.      .+....... .......++.+.++...+
T Consensus       173 ~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p-~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          173 K-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             E-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETT
T ss_pred             E-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC-CeeEECCCCCEEEEEeCC
Confidence            3 323334567899999998754 44567899999985  44 321      111111112 223356677777777667


Q ss_pred             CeEEEEEecccCcceeEEe-eccccccccc-CCCCeEEEEeccCC
Q 021160          258 VIMHVLRLQRRQTLAYRER-RYNAADFESD-EEEGETYLLGFSDS  300 (316)
Q Consensus       258 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~v~~~~~~~~  300 (316)
                      +.|..|+.. ++....... ......++.+ .+.+.+|+.....+
T Consensus       251 ~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          251 GAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             TEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             CEEEEECCC-CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            888888863 332222211 1112333333 44456776655544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.21  E-value=1.4e-09  Score=100.02  Aligned_cols=221  Identities=6%  Similarity=-0.071  Sum_probs=131.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--------------cEEEEeCcCCc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--------------YARVYDIRKCH   68 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--------------~v~~wd~~~~~   68 (316)
                      ..|++||+.+.+.... ...           ...+..++|+|+  +.|+.++.++              .|++|++.++.
T Consensus       189 ~~i~v~dl~tg~~~~~-~~~-----------~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  254 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD-ELK-----------WVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ  254 (741)
T ss_dssp             EEEEEEETTTCCEEEE-EEE-----------EEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCG
T ss_pred             EEEEEEECCCCCCCCc-cCC-----------CceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCc
Confidence            4699999988765432 111           122357899998  3555555444              38889987664


Q ss_pred             ccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC-----CcEEEEEcCCCCCCCCccCCccccccCCC-
Q 021160           69 WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND-----ELVYLFEKNMGLGPSPLSLSPEDLQKREE-  141 (316)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  141 (316)
                      ..       ..   ..... ..+...+..+.|+|+|++|+. +.+     ..|++||+.++.               .. 
T Consensus       255 ~~-------~~---lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~---------------~~~  308 (741)
T 1yr2_A          255 SA-------DQ---PVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK---------------IGP  308 (741)
T ss_dssp             GG-------CE---EEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE---------------ECC
T ss_pred             hh-------CE---EEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC---------------Ccc
Confidence            10       00   00011 223345889999999996665 333     379999987641               12 


Q ss_pred             cceeeCCcCCceeeeEEEecCCCcEEEEecc----CCeEEEEeccCC--eeEEEeecCccceEEEEEcCCCCeEEEEeCC
Q 021160          142 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE  215 (316)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d  215 (316)
                      ...+..+...  .... + .++++.|+..+.    ++.|++||+.++  +....+..+...+..++|+ ++.++++...|
T Consensus       309 ~~~l~~~~~~--~~~~-~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          309 VTALIPDLKA--QWDF-V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD  383 (741)
T ss_dssp             CEEEECSSSS--CEEE-E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred             cEEecCCCCc--eEEE-E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence            4455555433  4433 3 477888877765    456999999874  4444445555567778887 55668888889


Q ss_pred             CcEEEecC--CCCCCCCCCCC-cccceeeeecCCCCceeE-E---ecCCCeEEEEEecccC
Q 021160          216 KTVKLWAP--MPTDFPPLPDN-AEKIMKANKQGREDHSRI-T---LTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       216 ~~i~iwd~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-s---~~~d~~~~~w~~~~~~  269 (316)
                      +..+||.+  .++....+..+ ...+.... +++++..++ +   ....+.+..||+.+++
T Consensus       384 g~~~l~~~~~~g~~~~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          384 AKSQVLAFDLDGKPAGAVSLPGIGSASGLS-GRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TEEEEEEEETTSCEEEECBCSSSCEEEEEE-CCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CEEEEEEEeCCCCceeeccCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88777754  33333333322 23333333 555555443 3   3334889999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=1.1e-08  Score=84.37  Aligned_cols=154  Identities=9%  Similarity=-0.028  Sum_probs=99.7

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccC-CCcccEEEEEEccCCCeEEEec--
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYN--  111 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~--  111 (316)
                      ..+.+++|+|++ +++++. . ..|.+||..+++..          .+.  .... .....+..++++|+|+++++..  
T Consensus        90 ~~v~~i~~~~dg-~l~v~~-~-~gl~~~d~~~g~~~----------~~~--~~~~~~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           90 FMGSALAKISDS-KQLIAS-D-DGLFLRDTATGVLT----------LHA--ELESDLPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             SCEEEEEEEETT-EEEEEE-T-TEEEEEETTTCCEE----------EEE--CSSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcceEEEEeCCC-eEEEEE-C-CCEEEEECCCCcEE----------EEe--eCCCCCCCCCCCCEEECCCCCEEEEeCCC
Confidence            468999999998 666544 4 44999998877521          000  0001 1134688999999999777643  


Q ss_pred             -----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE-eccCCeEEEEecc--C
Q 021160          112 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKK--G  183 (316)
Q Consensus       112 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~~wd~~--~  183 (316)
                           .+.|+.++  .+                + ...+......  ...++| +++++.++. .+.++.|.+|++.  +
T Consensus       155 ~~~~~~~~l~~~~--~g----------------~-~~~~~~~~~~--~~~i~~-s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          155 KAETGAGSIYHVA--KG----------------K-VTKLFADISI--PNSICF-SPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             TCCTTCEEEEEEE--TT----------------E-EEEEEEEESS--EEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             cCCCCceEEEEEe--CC----------------c-EEEeeCCCcc--cCCeEE-cCCCCEEEEEECCCCEEEEEEccccc
Confidence                 24455555  33                2 2222222222  678898 999986654 4567899999986  5


Q ss_pred             C-ee-----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          184 G-KL-----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       184 ~-~~-----~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      + +.     ...+......+..+++.+++.+.++...++.|.+|+...
T Consensus       213 Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence            6 32     222323345678899999998877766678899999854

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.14  E-value=9.6e-08  Score=80.21  Aligned_cols=252  Identities=10%  Similarity=-0.050  Sum_probs=143.8

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCcccCCC
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~~~~   73 (316)
                      .|.++|+.+.+....+...           ..+  .++++|++ +.++++.          .++.|.+||..+.+....+
T Consensus        48 ~v~v~D~~t~~~~~~i~~g-----------~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i  113 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG-----------FLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI  113 (373)
T ss_pred             EEEEEECCCCeEEEEecCC-----------CCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEE
Confidence            6889998876654333221           123  89999999 6666664          3678999999877643221


Q ss_pred             CCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--c-CCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCc
Q 021160           74 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHR  149 (316)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (316)
                      ....      .... . +......++|+|+|++|+.+  . ++.|.++| .++                +.+.. +....
T Consensus       114 ~~~~------~~~~-~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~----------------~~~~~~i~~~~  168 (373)
T 2mad_H          114 ELPD------APRF-D-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG----------------SSDDQLLSSPT  168 (373)
T ss_pred             ECCC------cccc-c-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC----------------CEEeEEcCCCc
Confidence            1100      0000 0 01223478999999966653  2 57899999 877                44444 33211


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-----cCccc-eEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-----GDRHV-VNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-----~~~~~-v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                            ++.+.+.....+++.+.||.+.+++. +++......     ....+ .....+.+++..++..+..+.+.+.|+
T Consensus       169 ------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~  241 (373)
T 2mad_H          169 ------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             ------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEec
Confidence                  13332333455667778999999999 887663322     11112 123456666655444456788999998


Q ss_pred             CCCCC---CCCCCC----------cccceeeeecCCCCceeEE-ec---------CCCeEEEEEecccCcceeE------
Q 021160          224 MPTDF---PPLPDN----------AEKIMKANKQGREDHSRIT-LT---------PDVIMHVLRLQRRQTLAYR------  274 (316)
Q Consensus       224 ~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~~~s-~~---------~d~~~~~w~~~~~~~~~~~------  274 (316)
                      .....   ..+.-.          .... .....++++..+.. ..         ..+.|.++|+.+.+.....      
T Consensus       242 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~-~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p  320 (373)
T 2mad_H          242 SAAGATNKAPIDALSGGRKADTWRPGGW-QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             cCCcceEeeeeeecCCcccccceecCce-EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCc
Confidence            75431   111100          0111 11224555444443 32         2357899998876443222      


Q ss_pred             ---Eeecccc-cccccC-CCCeEEEEeccCCCC
Q 021160          275 ---ERRYNAA-DFESDE-EEGETYLLGFSDSDA  302 (316)
Q Consensus       275 ---~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~  302 (316)
                         .+++++. .+.... .++.|.++|...++.
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence               4666665 444443 577899999887764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.14  E-value=2.5e-08  Score=83.18  Aligned_cols=219  Identities=9%  Similarity=-0.053  Sum_probs=130.8

Q ss_pred             EEECCCCCcEEEEEec-----CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e---
Q 021160           40 IVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y---  110 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~-----dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~---  110 (316)
                      ....|++ ..+++...     ++.|.++|..+++..              ..+..+ ..+ . ++++|+|+.+.. .   
T Consensus        38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~v~--------------~~I~vG-~~P-~-va~spDG~~lyVan~~~   99 (386)
T 3sjl_D           38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVI--------------GMIDGG-FLP-N-PVVADDGSFIAHASTVF   99 (386)
T ss_dssp             CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEE--------------EEEEEC-SSC-E-EEECTTSSCEEEEEEEE
T ss_pred             eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCeEE--------------EEEECC-CCC-c-EEECCCCCEEEEEcccc
Confidence            4557888 55555543     689999999988732              222122 223 3 999999985544 3   


Q ss_pred             -------cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-----CCceeeeEEEecCCCcEEEEecc--CCeE
Q 021160          111 -------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-----NSQTVKGVNFFGPNDEYVMSGSD--CGHL  176 (316)
Q Consensus       111 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~--dg~v  176 (316)
                             .++.|.+||..+.                +.+..+....     .......+.+ +|+|++++++..  ++.|
T Consensus       100 ~r~~~G~~~~~VsviD~~t~----------------~v~~~I~v~~g~r~~~g~~P~~~a~-spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D          100 SRIARGERTDYVEVFDPVTL----------------LPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EETTEEEEEEEEEEECTTTC----------------CEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSSSCEE
T ss_pred             cccccCCCCCEEEEEECCCC----------------eEEEEEECCCccccccCCCCceEEE-cCCCCEEEEEEcCCCCeE
Confidence                   2577999999887                5555554221     0112567888 999999988864  6899


Q ss_pred             EEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC-CCC-----CCCCCCccccee-eeecCCCCc
Q 021160          177 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDF-----PPLPDNAEKIMK-ANKQGREDH  249 (316)
Q Consensus       177 ~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~-~~~-----~~~~~~~~~~~~-~~~~~~~~~  249 (316)
                      .++|+.+++.+.++.....   ...+....+.+++.+.||++.+.++.. +++     ..+......+.. ..+..++++
T Consensus       163 sVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~  239 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  239 (386)
T ss_dssp             EEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence            9999999999988864321   122322334566777788877777765 332     111111122211 121234565


Q ss_pred             eeEEecCCCeEEEEEecccCcceeEE------------eeccc-ccccccCCCCeEEEEec
Q 021160          250 SRITLTPDVIMHVLRLQRRQTLAYRE------------RRYNA-ADFESDEEEGETYLLGF  297 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~v~~~~~  297 (316)
                      +++ .+.++.+.+.|+..........            +.|.+ ..++.+.+.+++|+..-
T Consensus       240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence            444 5558999999987653221111            12222 33444566777777654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=1.7e-08  Score=84.18  Aligned_cols=255  Identities=10%  Similarity=-0.008  Sum_probs=147.6

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCccc
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWY   70 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~   70 (316)
                      |.+.|.+.|..+.+....+...           ..+ . ++++|++ ++++++.          .++.|.+||..+.+..
T Consensus        57 ~~~~V~ViD~~t~~v~~~I~vG-----------~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~  122 (386)
T 3sjl_D           57 AVTQQFVIDGEAGRVIGMIDGG-----------FLP-N-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPT  122 (386)
T ss_dssp             SSEEEEEEETTTTEEEEEEEEC-----------SSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CCCEEEEEECCCCeEEEEEECC-----------CCC-c-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence            3678999999888776666543           223 4 9999999 5555543          3678999999988743


Q ss_pred             CCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160           71 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                      ..+..+..      ..  .........++++|+|+++.. . . ++.|.++|+.++                +.+..+..
T Consensus       123 ~~I~v~~g------~r--~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~----------------~vv~tI~v  178 (386)
T 3sjl_D          123 ADIELPDA------PR--FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----------------AFKRMLDV  178 (386)
T ss_dssp             EEEEETTC------CC--CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----------------EEEEEEEC
T ss_pred             EEEECCCc------cc--cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC----------------cEEEEEEC
Confidence            22110000      00  000113346899999996554 3 2 689999999987                56666643


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecC----ccce-EEEEEc-CCCCeEEEEeCCCcEEE
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGD----RHVV-NQLEPH-PHIPMFATCGIEKTVKL  220 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~----~~~v-~~~~~~-p~~~~l~s~~~d~~i~i  220 (316)
                      ..    . ...+ +...+.+++.+.||.+.+.++.+ ++.......+    ...+ ...+|. ++++++. .+.+|.|.+
T Consensus       179 ~g----~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v  251 (386)
T 3sjl_D          179 PD----C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQ  251 (386)
T ss_dssp             CS----E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEE
T ss_pred             CC----c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEE
Confidence            21    1 1223 55566777888899998999876 5653322111    1122 124564 6775544 556899999


Q ss_pred             ecCCCCCCCCCCCC-------------cccceeeeecCCC-CceeEEec---------CCCeEEEEEecccCcceeE---
Q 021160          221 WAPMPTDFPPLPDN-------------AEKIMKANKQGRE-DHSRITLT---------PDVIMHVLRLQRRQTLAYR---  274 (316)
Q Consensus       221 wd~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~---------~d~~~~~w~~~~~~~~~~~---  274 (316)
                      .|+.+.........             ........ ..++ ++++++..         ....|.+.|+.+++...+.   
T Consensus       252 ~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a-~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg  330 (386)
T 3sjl_D          252 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA-YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG  330 (386)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE-EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcceeecceeccccccccccccCCCcceee-ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC
Confidence            99976642111100             11111122 2344 33444432         2367888898887665543   


Q ss_pred             ------Eeecccc-cc-cccCCCCeEEEEeccCCC
Q 021160          275 ------ERRYNAA-DF-ESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       275 ------~~~~~~~-~~-~~~~~~~~v~~~~~~~~~  301 (316)
                            ..++++. .+ .+...++.|.++|...++
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence                  3444543 22 334556668888877665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.12  E-value=9.2e-09  Score=93.73  Aligned_cols=221  Identities=9%  Similarity=0.001  Sum_probs=130.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC-------------cEEEEeCcCCcc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-------------YARVYDIRKCHW   69 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg-------------~v~~wd~~~~~~   69 (316)
                      ..|++||+.+.+..... ..           ......++|+ ++ +.|+.++.+.             .|++|++.+...
T Consensus       155 ~~i~v~dl~tg~~~~~~-~~-----------~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~  220 (693)
T 3iuj_A          155 REIHLMDVESKQPLETP-LK-----------DVKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE  220 (693)
T ss_dssp             EEEEEEETTTCSEEEEE-EE-----------EEESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGG
T ss_pred             EEEEEEECCCCCCCccc-cC-----------CceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcc
Confidence            46899999887654331 11           1113578999 88 7777776663             399999887641


Q ss_pred             cCCCCCCCCceecccccccCC-CcccEEEEEEccCCCeEEE-e-c---CCcEEEEEcCCCCCCCCccCCccccccCCCcc
Q 021160           70 YSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLIS-Y-N---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ  143 (316)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s-~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  143 (316)
                      .       ..   ..... .. |...+..+.|+|+|++|+. . .   ...|+++|+.++.               ....
T Consensus       221 ~-------~~---~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~~~  274 (693)
T 3iuj_A          221 D-------DR---LVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---------------APLL  274 (693)
T ss_dssp             G-------CE---EEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT---------------CCCE
T ss_pred             c-------ce---EEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC---------------CceE
Confidence            0       00   11111 22 3445788999999996543 2 2   3589999987651               1345


Q ss_pred             eeeCCcCCceeeeEEEecCCCcEEE-Eecc---CCeEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeC-CC
Q 021160          144 VYSGHRNSQTVKGVNFFGPNDEYVM-SGSD---CGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGI-EK  216 (316)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~---dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~  216 (316)
                      .+..+...  .... + ++++..|+ ....   .+.|..+++.++..  ...+..|...+.  .|+|+++.|+.... ++
T Consensus       275 ~l~~~~~~--~~~~-~-~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g  348 (693)
T 3iuj_A          275 TVQGDLDA--DVSL-V-DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA  348 (693)
T ss_dssp             EEECSSSS--CEEE-E-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred             EEeCCCCc--eEEE-E-eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence            55555543  4443 3 44555544 4433   36899999987654  345555665555  88999988766654 44


Q ss_pred             --cEEEecCCCCCCCCCCC-CcccceeeeecCCCCc-eeEEecC---CCeEEEEEecccCc
Q 021160          217 --TVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDH-SRITLTP---DVIMHVLRLQRRQT  270 (316)
Q Consensus       217 --~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~s~~~---d~~~~~w~~~~~~~  270 (316)
                        .|++|++.++....+.- ....+.... .++++. ++++.+.   -+.+..+++.+++.
T Consensus       349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~-~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          349 TARVEQFDYEGKRVREVALPGLGSVSGFN-GKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEEEECTTSCEEEEECCSSSSEEEECC-CCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eeEEEEEECCCCeeEEeecCCCceEEeee-cCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence              68999988665333321 222232333 344444 4444333   27788888766543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=2e-09  Score=98.07  Aligned_cols=199  Identities=9%  Similarity=0.116  Sum_probs=120.3

Q ss_pred             CCccceEEEEECCCCCcEEEEE-----ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVG-----GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g-----~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      +|...+..++|+|+| +++|.+     +....|++||+.+++..             ...+ .  ......++|+ ||+.
T Consensus       126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~-------------~~~~-~--~~k~~~~~Ws-Dg~~  187 (693)
T 3iuj_A          126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPL-------------ETPL-K--DVKFSGISWL-GNEG  187 (693)
T ss_dssp             TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEE-------------EEEE-E--EEESCCCEEE-TTTE
T ss_pred             CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCC-------------cccc-C--CceeccEEEe-CCCE
Confidence            466678999999999 677643     23357999999988621             0011 1  1112467899 9985


Q ss_pred             EEE-ecCC-------------cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-CCceeeeEEEecCCCcEEEEec
Q 021160          107 LIS-YNDE-------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus       107 l~s-~~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      |+. ..+.             .|++|++.+...              .....+.... ......++.| +|+|++|+...
T Consensus       188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--------------~~~~v~~~~~~~~~~~~~~~~-SpDg~~l~~~~  252 (693)
T 3iuj_A          188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE--------------DDRLVFGAIPAQHHRYVGATV-TEDDRFLLISA  252 (693)
T ss_dssp             EEEEESSCCC-------CCCCEEEEEETTSCGG--------------GCEEEESCSGGGCCSEEEEEE-CTTSCEEEEEE
T ss_pred             EEEEEecCcccccccccCCCcEEEEEECCCCcc--------------cceEEEecCCCCCeEEEEEEE-cCCCCEEEEEE
Confidence            554 4443             399999876510              1122232222 1122678888 99999886543


Q ss_pred             c----CCeEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEE-EEeCC---CcEEEecCCCCCC---CCCCCCcccce
Q 021160          172 D----CGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFA-TCGIE---KTVKLWAPMPTDF---PPLPDNAEKIM  239 (316)
Q Consensus       172 ~----dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d---~~i~iwd~~~~~~---~~~~~~~~~~~  239 (316)
                      .    ...++++|+.++. ....+..+....... |++++..|+ ....+   +.|..+++.+...   ..+..+...++
T Consensus       253 ~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  331 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL  331 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             ccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence            3    3589999998763 345555566555555 666666644 44433   5788999887653   34444544444


Q ss_pred             eeeecCCCCceeEE-ecCCC--eEEEEEecc
Q 021160          240 KANKQGREDHSRIT-LTPDV--IMHVLRLQR  267 (316)
Q Consensus       240 ~~~~~~~~~~~~~s-~~~d~--~~~~w~~~~  267 (316)
                         .+++++..++. ...++  .|++|++..
T Consensus       332 ---~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          332 ---TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             ---EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             ---EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence               45665555554 44454  577777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=3.8e-11  Score=100.96  Aligned_cols=181  Identities=10%  Similarity=0.037  Sum_probs=92.3

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP  126 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~  126 (316)
                      ..+++++.|+.|+.||..+++....              . ..  ..+.+..+..++.++++ +.|+.|+.||..++   
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~--------------~-~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG---   69 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWT--------------L-KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN---   69 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEE--------------E-EC--CCSCCCC-----CCEEECTTTCCEEEC--------
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEE--------------e-cC--CCceecceEcCCCEEEEeCCCCEEEEEECCCC---
Confidence            6889999999999999999974321              1 11  22333334456766666 57999999999877   


Q ss_pred             CCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160          127 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  206 (316)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~  206 (316)
                                   +.+..+..+... .+.+.-. -..+..+++++.++.++.||..+|+.+..+..+.    ...++|++
T Consensus        70 -------------~~~w~~~~~~~~-~~~~sp~-~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~  130 (369)
T 2hz6_A           70 -------------EGLTKLPFTIPE-LVQASPC-RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST  130 (369)
T ss_dssp             -------------CCSEECSCCHHH-HHTTCSC-C-----CCCCEEEEEEEEECCC------------------------
T ss_pred             -------------ceeeeeeccCcc-ccccCce-EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC
Confidence                         344333322110 0111000 1135577888889999999999999887776543    23456788


Q ss_pred             CeEEEEeCCCcEEEecCCCCCC-CCCCCCcccceeeeecCCC---CceeEEecCCCeEEEEEecccCc
Q 021160          207 PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRE---DHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       207 ~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ..+++++.|+.|+.||.++++. ..+....   ........+   ...++.++.++.+..||..+++.
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             CEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            8888899999999999988873 2222111   011111111   14567788899999999887754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=1.5e-08  Score=84.25  Aligned_cols=234  Identities=9%  Similarity=-0.020  Sum_probs=138.4

Q ss_pred             ceEEEEECCCCCcEEEEEe--cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c-
Q 021160           36 RLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-  111 (316)
                      .+..++++|++ +++++..  .++.++||.+.++++.....       .  ......+...+..+++.++++++++. . 
T Consensus        18 ~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~~~p~-------~--~~~~~~~~~~p~gv~~d~~g~L~v~D~g~   87 (343)
T 2qe8_A           18 APGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLIPFPP-------Q--SGNAIITFDTVLGIKSDGNGIVWMLDNGN   87 (343)
T ss_dssp             CEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEEESCC-------C--CSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred             CcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCeecCCC-------c--ccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence            57899999998 7888753  23435566655444221000       0  00112455689999999999877763 3 


Q ss_pred             ----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc----CCceeeeEEEecCCC-cEEEEec---cCCeEEEE
Q 021160          112 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPND-EYVMSGS---DCGHLFIW  179 (316)
Q Consensus       112 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~~l~~~~---~dg~v~~w  179 (316)
                          +..|.+||+.++                +..+.+....    ....+..+++ ++++ ..+++..   .++.|.+|
T Consensus        88 ~~~~~~~i~~~d~~tg----------------~~~~~~~~~~~~~~~~~~~~~v~v-d~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           88 QSKSVPKLVAWDTLNN----------------QLSRVIYLPPPITLSNSFVNDLAV-DLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             HHTSCCEEEEEETTTT----------------EEEEEEECCTTTSCTTCCCCEEEE-ETTTTEEEEEECCSGGGCEEEEE
T ss_pred             CcCCCCeEEEEECCCC----------------eEEEEEECChhhcccccccceEEE-ecCCCEEEEEcCccCCCCeEEEE
Confidence                588999999876                3444443211    1122688888 7654 4445554   67899999


Q ss_pred             eccCCeeEEEeecCc-----------------------------cceEEEEEcCCCCeEEEEeCCC-cEEEecCC---CC
Q 021160          180 KKKGGKLVRLMVGDR-----------------------------HVVNQLEPHPHIPMFATCGIEK-TVKLWAPM---PT  226 (316)
Q Consensus       180 d~~~~~~~~~~~~~~-----------------------------~~v~~~~~~p~~~~l~s~~~d~-~i~iwd~~---~~  226 (316)
                      |+.+++....+.+|.                             ..+..++|+|+++.|..+..++ .+..++..   ..
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            999888766554321                             1357899999999887776665 44444321   11


Q ss_pred             CC------CCCC--CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeec---ccccccccCCCCeEEEE
Q 021160          227 DF------PPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY---NAADFESDEEEGETYLL  295 (316)
Q Consensus       227 ~~------~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~  295 (316)
                      .+      ..+.  ++......+ ...+++.++++...++.|.+|+..+++...... .+   ....++.+ .+|.+|+.
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgi-a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~-~~g~l~v~  307 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGI-SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFG-SDGYLYFD  307 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCE-EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEEC-TTSCEEEE
T ss_pred             CCChhhhhcceEecccCCCCceE-EECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEEC-CCCcEEEE
Confidence            10      0111  111111122 356678899999999999999974443222221 11   12233333 34778888


Q ss_pred             eccC
Q 021160          296 GFSD  299 (316)
Q Consensus       296 ~~~~  299 (316)
                      +...
T Consensus       308 ~~~~  311 (343)
T 2qe8_A          308 CNQL  311 (343)
T ss_dssp             ECCG
T ss_pred             eCcc
Confidence            7543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.04  E-value=3.4e-08  Score=80.66  Aligned_cols=189  Identities=9%  Similarity=0.052  Sum_probs=112.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE----
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS----  109 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s----  109 (316)
                      ...+..++++++| +++++...++.|.+|+.. ++..          .+.. .........+..+++.++|+++++    
T Consensus        85 ~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~----------~~~~-~~~~~~~~~~~~i~~d~dG~l~~td~~~  151 (305)
T 3dr2_A           85 TAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAH----------LLVG-RYAGKRLNSPNDLIVARDGAIWFTDPPF  151 (305)
T ss_dssp             CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----------EEEC-EETTEECSCCCCEEECTTSCEEEECCSG
T ss_pred             CCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEE----------EEEe-ccCCCccCCCCCEEECCCCCEEEeCcCC
Confidence            4568899999998 666665566889999976 4321          1100 000111234667999999998885    


Q ss_pred             ec--------------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC--
Q 021160          110 YN--------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC--  173 (316)
Q Consensus       110 ~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--  173 (316)
                      +.              .+.|+.+|..++                +. ..+. ....  ...++| +|+++.|+.+...  
T Consensus       152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g----------------~~-~~~~-~~~~--p~gl~~-spdg~~lyv~~~~~~  210 (305)
T 3dr2_A          152 GLRKPSQGCPADPELAHHSVYRLPPDGS----------------PL-QRMA-DLDH--PNGLAF-SPDEQTLYVSQTPEQ  210 (305)
T ss_dssp             GGSCGGGSCCCCCSSSCEEEEEECSSSC----------------CC-EEEE-EESS--EEEEEE-CTTSSEEEEEECCC-
T ss_pred             CccccccccccccccCCCeEEEEcCCCC----------------cE-EEEe-cCCC--CcceEE-cCCCCEEEEEecCCc
Confidence            21              245777776555                22 2222 2222  678998 9999987776654  


Q ss_pred             ----CeEEEEeccCCeeE--EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCC
Q 021160          174 ----GHLFIWKKKGGKLV--RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       174 ----g~v~~wd~~~~~~~--~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  246 (316)
                          +.|+.|++..+...  ..+ .........+++.++|++.++. .+ .|.+|+.....+..+.... .+..++ +.+
T Consensus       211 ~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~~~~~~~-~~~~~~-f~~  286 (305)
T 3dr2_A          211 GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLGHIPTPG-TASNCT-FDQ  286 (305)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEEEEECSS-CCCEEE-ECT
T ss_pred             CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEEEEECCC-ceeEEE-EeC
Confidence                78999998765421  111 1123445678999999965544 44 4999998655433332222 233444 446


Q ss_pred             CCceeEEecCCCeE
Q 021160          247 EDHSRITLTPDVIM  260 (316)
Q Consensus       247 ~~~~~~s~~~d~~~  260 (316)
                      ++..+...+.++..
T Consensus       287 d~~~L~it~~~~l~  300 (305)
T 3dr2_A          287 AQQRLFITGGPCLW  300 (305)
T ss_dssp             TSCEEEEEETTEEE
T ss_pred             CCCEEEEEcCCeEE
Confidence            65555555555443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.03  E-value=3.3e-08  Score=80.71  Aligned_cols=154  Identities=10%  Similarity=0.030  Sum_probs=104.6

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  113 (316)
                      .......|+|++..+++++..++.|..|+.. ++.          ..+      ..+...+..+++.++|+++++. .++
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----------~~~------~~~~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----------DVL------LDATAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----------EEE------EESCSCEEEEEECTTSCEEEEETTTT
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----------EEE------eCCCCccceeeECCCCCEEEEECCCC
Confidence            3467899999984477888888999999873 431          111      1234567899999999987775 467


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC---CceeeeEEEecCCCcEEEE----ecc-------------C
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMS----GSD-------------C  173 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~----~~~-------------d  173 (316)
                      .|.+|+.. +                . ...+.....   ...+.++++ .++|.++++    |..             .
T Consensus       108 ~v~~~~~~-g----------------~-~~~~~~~~~~~~~~~~~~i~~-d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A          108 AITRSDAD-G----------------Q-AHLLVGRYAGKRLNSPNDLIV-ARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             EEEEECTT-S----------------C-EEEEECEETTEECSCCCCEEE-CTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             EEEEECCC-C----------------C-EEEEEeccCCCccCCCCCEEE-CCCCCEEEeCcCCCccccccccccccccCC
Confidence            89999975 3                1 122211111   012678888 899998886    432             3


Q ss_pred             CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEecCCCC
Q 021160          174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPT  226 (316)
Q Consensus       174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d------~~i~iwd~~~~  226 (316)
                      +.|+.+|..+++.....  .......++|+|+++.|+.+...      +.|.+|++...
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            56888888777654433  33466889999999977666554      68999998653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.97  E-value=6.7e-07  Score=75.06  Aligned_cols=187  Identities=9%  Similarity=-0.056  Sum_probs=112.3

Q ss_pred             EECCCCCcEEEEEec--CC---cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec----
Q 021160           41 VIDPRNPNYFAVGGS--DE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----  111 (316)
Q Consensus        41 ~~~~~~~~~l~~g~~--dg---~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----  111 (316)
                      ...|++ .++++...  ..   .|.++|..+++..              ..+..+ ..+  .++++|+|+++..++    
T Consensus        27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~--------------~~i~~g-~~p--~i~~spDg~~lyv~n~~~~   88 (373)
T 2mad_H           27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSIL--------------GHVNGG-FLP--NPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEE--------------EEecCC-CCC--CeEECCCCCEEEEEecccc
Confidence            344666 55555542  33   7899999988732              222122 223  899999999666542    


Q ss_pred             -------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cC----CceeeeEEEecCCCcEEEEecc--CCeEE
Q 021160          112 -------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RN----SQTVKGVNFFGPNDEYVMSGSD--CGHLF  177 (316)
Q Consensus       112 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~l~~~~~--dg~v~  177 (316)
                             ++.|.+||..+.                +.+..+... ..    ......+.+ +|+|++|++++.  ++.|.
T Consensus        89 ~~~rg~~~~~v~viD~~t~----------------~~~~~i~~~~~~~~~~g~~p~~~~~-spDG~~l~v~n~~~~~~v~  151 (373)
T 2mad_H           89 RIAKGKRTDYVEVFDPVTF----------------LPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFAAGPAVG  151 (373)
T ss_pred             ccccCCCCCeEEEEECCCC----------------cEEEEEECCCccccccCCCccceEE-CCCCCEEEEEecCCCCeEE
Confidence                   577999999776                344444321 00    011457888 999999998874  57899


Q ss_pred             EEeccCCeeEEE-eecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCCCC-CCC-----CCcccceeeeecCCCCc
Q 021160          178 IWKKKGGKLVRL-MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFP-PLP-----DNAEKIMKANKQGREDH  249 (316)
Q Consensus       178 ~wd~~~~~~~~~-~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~  249 (316)
                      ++| .+++.+.. +....    ++.+.|+++ .+++.+.||.+.+++. .++.. ...     ....++.....+.+++.
T Consensus       152 viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          152 LVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             EEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence            999 99998877 65322    244556654 4667778999999999 65422 110     11112111111223333


Q ss_pred             eeEEecCCCeEEEEEeccc
Q 021160          250 SRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++..+..+.+.+.|+...
T Consensus       226 ~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAA  244 (373)
T ss_pred             EEEEEcCCceEEEEeccCC
Confidence            3333346778888887644

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.93  E-value=9.1e-08  Score=81.15  Aligned_cols=255  Identities=9%  Similarity=-0.005  Sum_probs=148.0

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCcccCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSP   72 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~~~   72 (316)
                      +.|.++|+.+.+....+...           ..+  .++++|++ ++++++.          .++.|.++|..+.+....
T Consensus        99 ~~VsVID~~t~~vv~~I~vG-----------~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~  164 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGG-----------FLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD  164 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEEC-----------SSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             CeEEEEECCCCEEEEEEECC-----------CCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence            78999999888776666653           224  79999999 5555554          467899999998874322


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                      +..+.+      ...  ........+.++|+|+++..+  . ++.|.+.|+.+.                +.+..+....
T Consensus       165 I~v~g~------~r~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----------------kvv~~I~v~g  220 (426)
T 3c75_H          165 IELPDA------PRF--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----------------TFDRMLDVPD  220 (426)
T ss_dssp             EEETTC------CCC--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----------------EEEEEEECCS
T ss_pred             EECCCc------ccc--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----------------eEEEEEEcCC
Confidence            110000      000  001123467899999866553  2 678999999887                5555555321


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE----eecCccce-EEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL----MVGDRHVV-NQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~----~~~~~~~v-~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                          . ...+ +.....+++.+.||.+.+.+..+++....    +.....++ ..+.+.+++..++..+..+.+.+.|..
T Consensus       221 ----~-~~~~-p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~  294 (426)
T 3c75_H          221 ----C-YHIF-PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT  294 (426)
T ss_dssp             ----E-EEEE-EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred             ----c-eeec-cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence                1 1111 22235556666788887778766655432    11111111 235678888887777778899999986


Q ss_pred             CCCC---CCCC---CC-------cccceeeeecCCCCc-eeEEec---------CCCeEEEEEecccCcceeE-------
Q 021160          225 PTDF---PPLP---DN-------AEKIMKANKQGREDH-SRITLT---------PDVIMHVLRLQRRQTLAYR-------  274 (316)
Q Consensus       225 ~~~~---~~~~---~~-------~~~~~~~~~~~~~~~-~~~s~~---------~d~~~~~w~~~~~~~~~~~-------  274 (316)
                      ....   ..+.   ..       ....... .+++++. ++++..         .++.|.++|+.+.+.....       
T Consensus       295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v-a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~  373 (426)
T 3c75_H          295 AEGATFRAPIEALTEAERADDWRPGGWQQT-AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEID  373 (426)
T ss_dssp             SSCEEECCCEESSCTTTGGGTEEECSSSCE-EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEEC
T ss_pred             CCceEEeeeeeeccccccccccccCCceee-EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcC
Confidence            5431   1110   00       0000012 2455544 444432         2467999999887655443       


Q ss_pred             --Eeecccc-ccccc-CCCCeEEEEeccCCCC
Q 021160          275 --ERRYNAA-DFESD-EEEGETYLLGFSDSDA  302 (316)
Q Consensus       275 --~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~  302 (316)
                        .+.+++. .+... ..++.|.++|......
T Consensus       374 gia~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          374 SINVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             eEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence              3455554 33333 3567788888877653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=5.8e-08  Score=80.70  Aligned_cols=185  Identities=12%  Similarity=0.098  Sum_probs=106.0

Q ss_pred             CCccceEEEEECCCCCcEEEEEec-----CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-C
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-E  105 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~-----dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  105 (316)
                      +|...+..+++++++ +++++-..     +..|.+||+.++++...+.         .......+...+..+++.+++ .
T Consensus        64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~---------~~~~~~~~~~~~~~v~vd~~~g~  133 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY---------LPPPITLSNSFVNDLAVDLIHNF  133 (343)
T ss_dssp             CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEE---------CCTTTSCTTCCCCEEEEETTTTE
T ss_pred             cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE---------CChhhcccccccceEEEecCCCE
Confidence            466789999999998 66665543     5789999999887432211         100001223456789999865 4


Q ss_pred             eEEE-e---cCCcEEEEEcCCCCCCCCc----cCCccc---cccCCCcceeeCCc----CCceeeeEEEecCCCcEEEEe
Q 021160          106 LLIS-Y---NDELVYLFEKNMGLGPSPL----SLSPED---LQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSG  170 (316)
Q Consensus       106 ~l~s-~---~d~~i~iwd~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~  170 (316)
                      .+++ .   .++.|.+||+.++......    ......   ..............    -...+..+++ +|+++.|+.+
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~-s~dg~~ly~~  212 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL-DAENEWLYLS  212 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE-CTTSCEEEEE
T ss_pred             EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe-ccCCCEEEEE
Confidence            5555 3   5788999998765210000    000000   00000000000000    0012678998 9999988887


Q ss_pred             ccCC-eEEEEecc---CCe-----eEE--EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          171 SDCG-HLFIWKKK---GGK-----LVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       171 ~~dg-~v~~wd~~---~~~-----~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ...+ .++.++..   .+.     ...  ...++......+++++++.++++...++.|.+||...++
T Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            6655 55555532   111     000  111333456679999999999998889999999984443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.89  E-value=4.4e-06  Score=66.58  Aligned_cols=198  Identities=8%  Similarity=-0.024  Sum_probs=119.0

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  113 (316)
                      .+..++|++++..++++-..++.|..+++.....               ..+..........+++.+++. ++++. ..+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~  101 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------EEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------EEEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence            4679999997645666666788999999875531               111111124568899999765 55553 578


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CCeEEEEeccCCeeEEEe
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~~wd~~~~~~~~~~  190 (316)
                      .|.+++++..                 ....+.... ......+++ +|++..|+.+..   .+.|..+++.. +....+
T Consensus       102 ~I~~~~~~g~-----------------~~~~~~~~~-~~~P~~i~v-d~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~  161 (267)
T 1npe_A          102 RIEVAKMDGT-----------------QRRVLFDTG-LVNPRGIVT-DPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL  161 (267)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSS-CSSEEEEEE-ETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE
T ss_pred             EEEEEEcCCC-----------------CEEEEEECC-CCCccEEEE-eeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE
Confidence            8999998754                 222222111 122688898 886555554443   46888888763 333333


Q ss_pred             e-cCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          191 V-GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       191 ~-~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      . ..-.....++++|++..| ++....+.|.++++.+.....+.........++ . .++.++++....+.|..++..++
T Consensus       162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~-~-d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT-S-YGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE-E-ETTEEEEEETTTTEEEEEETTTT
T ss_pred             EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE-E-eCCEEEEEECCCCeEEEEeCCCC
Confidence            2 223457889999987664 555567889999987643211111111112222 1 14556666667788888887665


Q ss_pred             Cc
Q 021160          269 QT  270 (316)
Q Consensus       269 ~~  270 (316)
                      +.
T Consensus       240 ~~  241 (267)
T 1npe_A          240 KE  241 (267)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.87  E-value=3.1e-10  Score=95.34  Aligned_cols=174  Identities=11%  Similarity=0.015  Sum_probs=89.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+.||..+.+....+..             +.+.+..+..++ ..+++++.|+.|+.||..+++.......      
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-------------~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~------   77 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-------------DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF------   77 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-------------CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC------
T ss_pred             CCEEEEEECCCCCEEEEecC-------------CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec------
Confidence            57899999988876555443             123334445556 6788888999999999988863211100      


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                       ......  ...+    .+..++.+++++.++.|+.||..++                +....+..+.      ...+ +
T Consensus        78 -~~~~~~--~~sp----~~~~~~~v~~g~~dg~v~a~D~~tG----------------~~~w~~~~~~------~~~~-~  127 (369)
T 2hz6_A           78 -TIPELV--QASP----CRSSDGILYMGKKQDIWYVIDLLTG----------------EKQQTLSSAF------ADSL-S  127 (369)
T ss_dssp             -CHHHHH--TTCS----CC-----CCCCEEEEEEEEECCC----------------------------------------
T ss_pred             -cCcccc--ccCc----eEecCCEEEEEeCCCEEEEEECCCC----------------cEEEEecCCC------cccc-c
Confidence             000000  0011    1112344444467899999999988                5555554332      1233 5


Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC---CeEEEEeCCCcEEEecCCCCC
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      |++..+++++.++.|+.||..+|+.+..+..+.  ....++.++.   ..++.++.|+.|+.||.++++
T Consensus       128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          128 PSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             -----EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             ccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            688899999999999999999998776654221  2233444432   456778889999999998876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=3.2e-07  Score=77.86  Aligned_cols=174  Identities=7%  Similarity=-0.068  Sum_probs=107.2

Q ss_pred             CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-----------cCCcEEEEEcCCCCC
Q 021160           57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-----------NDELVYLFEKNMGLG  125 (316)
Q Consensus        57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-----------~d~~i~iwd~~~~~~  125 (316)
                      +.|.++|..+.+..              ..+..+ ..+  .++++|+|+.+..+           .++.|.++|..+.  
T Consensus        99 ~~VsVID~~t~~vv--------------~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--  159 (426)
T 3c75_H           99 TQQFVIDGSTGRIL--------------GMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--  159 (426)
T ss_dssp             EEEEEEETTTTEEE--------------EEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--
T ss_pred             CeEEEEECCCCEEE--------------EEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--
Confidence            69999999998743              222122 234  79999999844443           2678999999887  


Q ss_pred             CCCccCCccccccCCCcceeeCC--cC---CceeeeEEEecCCCcEEEEecc--CCeEEEEeccCCeeEEEeecCccceE
Q 021160          126 PSPLSLSPEDLQKREEPQVYSGH--RN---SQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLMVGDRHVVN  198 (316)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~~~~~~~~~~l~~~~~--dg~v~~wd~~~~~~~~~~~~~~~~v~  198 (316)
                                    +.+..+.-.  ..   ......+.+ +|+|++++++..  ++.|.+.|+.+++.+..+.....   
T Consensus       160 --------------~vv~~I~v~g~~r~~~g~~P~~~~~-spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---  221 (426)
T 3c75_H          160 --------------LPIADIELPDAPRFLVGTYQWMNAL-TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---  221 (426)
T ss_dssp             --------------CEEEEEEETTCCCCCBSCCGGGSEE-CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---
T ss_pred             --------------cEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---
Confidence                          555555421  00   012467788 999999998864  67899999999999888864221   


Q ss_pred             EEEEcCCC-CeEEEEeCCCcEEEecCCCCCCC-----CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          199 QLEPHPHI-PMFATCGIEKTVKLWAPMPTDFP-----PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       199 ~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                       ....|++ +.+++.+.||.+.+.+...++..     .+.....++.....+.+++..++..+..+.+.+.|+...
T Consensus       222 -~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          222 -YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             -EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             -eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence             2233333 33555566676666666443321     121112222222223555555555566788999998654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.86  E-value=6.1e-07  Score=70.91  Aligned_cols=195  Identities=10%  Similarity=0.055  Sum_probs=126.3

Q ss_pred             ceEEEEECCCCCcEEEEEec--CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           36 RLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~--dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ....++|+|++ .++++.+.  ++.|+++|+.+++....+.            + .. ......+++.. +++.++. .+
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~------------l-~~-~~fgeGi~~~g-~~lyv~t~~~   85 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK------------M-DD-SYFGEGLTLLN-EKLYQVVWLK   85 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE------------C-CT-TCCEEEEEEET-TEEEEEETTC
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe------------c-CC-CcceEEEEEeC-CEEEEEEecC
Confidence            35799999987 66665543  6899999999998432210            1 11 11223455542 2444444 68


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      +.+.++|..+.                +.+..+... .+. -..+   +++++.++.+..++.|.++|..+.+.+..+..
T Consensus        86 ~~v~viD~~t~----------------~v~~~i~~g-~~~-g~gl---t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           86 NIGFIYDRRTL----------------SNIKNFTHQ-MKD-GWGL---ATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             SEEEEEETTTT----------------EEEEEEECC-SSS-CCEE---EECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCCC----------------cEEEEEECC-CCC-eEEE---EECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            99999999887                566666533 111 2334   44677777777789999999999988887763


Q ss_pred             Cc-----cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCC------------cccceeeeecCCC-CceeEE
Q 021160          193 DR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDN------------AEKIMKANKQGRE-DHSRIT  253 (316)
Q Consensus       193 ~~-----~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~------------~~~~~~~~~~~~~-~~~~~s  253 (316)
                      ..     ..++.+.|. ++..++....++.|.+-|+++++ ...+.-.            ...+..-..+.++ .+++++
T Consensus       145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            21     246788888 67656666568899999999887 3333211            0012233335554 567888


Q ss_pred             ecCCCeEEEEEeccc
Q 021160          254 LTPDVIMHVLRLQRR  268 (316)
Q Consensus       254 ~~~d~~~~~w~~~~~  268 (316)
                      +.....+.+.++...
T Consensus       224 gk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTCSEEEEEEEEEC
T ss_pred             CCCCCeEEEEEEecc
Confidence            888899999988765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.84  E-value=4.9e-06  Score=70.20  Aligned_cols=192  Identities=9%  Similarity=0.075  Sum_probs=114.8

Q ss_pred             ceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC------CcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d------g~v~~wd~~~~~~~~~~~   74 (316)
                      ++.|.|+|+.+... .++...-+..+.....| ...-..+...|++  +++++..+      +.|.++|.++.++.....
T Consensus       105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~  181 (462)
T 2ece_A          105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWE  181 (462)
T ss_dssp             TCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECC
T ss_pred             CCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc
Confidence            46799999975522 22222211000000000 1134567788988  55555444      789999999887443221


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEEec--------------------CCcEEEEEcCCCCCCCCccCCcc
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--------------------DELVYLFEKNMGLGPSPLSLSPE  134 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~  134 (316)
                      ..            .+-...-..+.|+|+++.++++.                    +.+|.+||+.++           
T Consensus       182 ~~------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------  238 (462)
T 2ece_A          182 ID------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------  238 (462)
T ss_dssp             SB------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------
T ss_pred             cC------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----------
Confidence            10            01111223578899999877764                    788999999876           


Q ss_pred             ccccCCCcceeeCCcCCceeeeEEE-ecCCCcEEEEecc------CCeEEEEeccCCee--EEEe--ecC----------
Q 021160          135 DLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD------CGHLFIWKKKGGKL--VRLM--VGD----------  193 (316)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~------dg~v~~wd~~~~~~--~~~~--~~~----------  193 (316)
                           +..+.+...........+.| ++|++++++++++      +++|.+|....++.  .+.+  ...          
T Consensus       239 -----k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~  313 (462)
T 2ece_A          239 -----KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL  313 (462)
T ss_dssp             -----EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGG
T ss_pred             -----cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccc
Confidence                 56666654321122445544 4899998888774      66888777665532  1111  110          


Q ss_pred             ------ccceEEEEEcCCCCeEEEEe-CCCcEEEecCC
Q 021160          194 ------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM  224 (316)
Q Consensus       194 ------~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~  224 (316)
                            ...+..+.++|++++|..+. ..+.|.+||+.
T Consensus       314 ~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          314 KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                  13467899999999976555 57899999986

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.83  E-value=5.3e-06  Score=70.03  Aligned_cols=202  Identities=10%  Similarity=0.081  Sum_probs=120.4

Q ss_pred             CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCC-CcccEEEEEEccCCCeEEEe-cC------CcE
Q 021160           44 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLISY-ND------ELV  115 (316)
Q Consensus        44 ~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~-~d------~~i  115 (316)
                      ++...+++.|..++.|.++|+.+....     +..++...+..+... ....-..+...|+| +++++ .+      +.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-----CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-----ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            666456667778899999999755210     111111111111101 11234567788999 76664 33      689


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC-ceeeeEEEecCCCcEEEEec-------------------cCCe
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-QTVKGVNFFGPNDEYVMSGS-------------------DCGH  175 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~-------------------~dg~  175 (316)
                      .++|..+.                +.+..+...... ..-..+.| +|+++.+++..                   ...+
T Consensus       167 ~vlD~~T~----------------~v~~~~~~~~~~~~~~Yd~~~-~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          167 LMLDHYSF----------------EPLGKWEIDRGDQYLAYDFWW-NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             EEECTTTC----------------CEEEECCSBCTTCCCCCCEEE-ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             EEEECCCC----------------eEEEEEccCCCCccccceEEE-CCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            99999877                566666532221 12345766 89999888874                   3789


Q ss_pred             EEEEeccCCeeEEEeecC-c-cceEEEEE--cCCCCeEEEEe------CCCcEEEecCCCCC--------------CCCC
Q 021160          176 LFIWKKKGGKLVRLMVGD-R-HVVNQLEP--HPHIPMFATCG------IEKTVKLWAPMPTD--------------FPPL  231 (316)
Q Consensus       176 v~~wd~~~~~~~~~~~~~-~-~~v~~~~~--~p~~~~l~s~~------~d~~i~iwd~~~~~--------------~~~~  231 (316)
                      |.+||+.+++.+.++... . .....+.|  +|+++++..++      .+++|.+|....+.              ...+
T Consensus       230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence            999999999988888653 1 23445555  99999855544      56677665433221              1111


Q ss_pred             CCCc------ccceeeeecCCCCcee-EEecCCCeEEEEEeccc
Q 021160          232 PDNA------EKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       232 ~~~~------~~~~~~~~~~~~~~~~-~s~~~d~~~~~w~~~~~  268 (316)
                      +.-.      .........+++++++ ++....+.|.++++...
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            1000      1112223366777655 56666799999998644

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.79  E-value=1.5e-07  Score=78.47  Aligned_cols=74  Identities=5%  Similarity=-0.081  Sum_probs=57.2

Q ss_pred             EEEecCCCcEEEEecc-C--------CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEe-CCCcEEEecCCC
Q 021160          157 VNFFGPNDEYVMSGSD-C--------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCG-IEKTVKLWAPMP  225 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~-d--------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~-~d~~i~iwd~~~  225 (316)
                      +++ +++++.++.+.. .        +.+.++|+.+.+.+..+.... ....++|+|+++. +++.. .++.|.++|+.+
T Consensus       269 v~~-s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAK-LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEE-ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEE-cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            667 889888876543 2        356799999999988887543 5788999999985 66666 599999999998


Q ss_pred             CC-CCCCC
Q 021160          226 TD-FPPLP  232 (316)
Q Consensus       226 ~~-~~~~~  232 (316)
                      .+ +.+++
T Consensus       347 ~kvv~~I~  354 (368)
T 1mda_H          347 DQDQSSVE  354 (368)
T ss_dssp             CEEEEECC
T ss_pred             CcEEEEEE
Confidence            87 44443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.74  E-value=4.6e-07  Score=82.32  Aligned_cols=241  Identities=10%  Similarity=0.057  Sum_probs=131.8

Q ss_pred             ceeeEEEEeeCCCcceEEEec-cccccccCCCCccceEE-EEECCCCCcEEEEEe------cCCcEEEEeCcCCcccCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCS-SFSENSKQPMNSIRLNA-IVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~-~~~~~~~~~gh~~~v~~-~~~~~~~~~~l~~g~------~dg~v~~wd~~~~~~~~~~   73 (316)
                      +|.|.-+|..+.+..-.+... ...       ....+.+ ..+. ++  .+++++      .++.|..||.++++.....
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~-------~~~~~~~sP~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          130 DGRLEAIDAKTGQRAWSVDTRADHK-------RSYTITGAPRVV-NG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSCTT-------SCCBCCSCCEEE-TT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCCEeeeecCcCCCC-------CCccccCCcEEE-CC--EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            577888888887765444432 110       0011110 0111 34  444443      3689999999999854332


Q ss_pred             CC--CCCceecccccc------cC--------CCcccEEEEEEccCCCeEEEe-cCC-------------------cEEE
Q 021160           74 SS--DTPVDTFCPRHL------IG--------KNNIHITGLAYSNTSELLISY-NDE-------------------LVYL  117 (316)
Q Consensus        74 ~~--~~~~~~~~~~~~------~~--------~~~~~i~~~~~~~~~~~l~s~-~d~-------------------~i~i  117 (316)
                      ..  ..+...+....+      ..        ++......+++.|++.++..+ .++                   .|..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            10  001000000000      00        111112357888877755554 454                   3999


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeCCcCC-------ceeeeEEEecCCCc---EEEEeccCCeEEEEeccCCeeE
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDE---YVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~---~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      +|..++                +.+..+......       ..+..... ..+|.   .++.++.+|.++++|..+|+++
T Consensus       280 lD~~TG----------------~~~W~~~~~~~d~wd~~~~~~~~l~d~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          280 VNADTG----------------EYVWHYQTTPGDAWDYTATQHMILAEL-PIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             EETTTC----------------CEEEEEESSTTCCSCCCCCSCEEEEEE-EETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEccCC----------------ceeEeeecCCcccccccCCCCcEEEee-ccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            999988                555544432110       00111122 22454   7889999999999999999987


Q ss_pred             EEeecCc-c--------------------------------------ceEEEEEcCCCCeEEEEeC--------------
Q 021160          188 RLMVGDR-H--------------------------------------VVNQLEPHPHIPMFATCGI--------------  214 (316)
Q Consensus       188 ~~~~~~~-~--------------------------------------~v~~~~~~p~~~~l~s~~~--------------  214 (316)
                      ....... .                                      ....++++|+..++.....              
T Consensus       343 ~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~  422 (689)
T 1yiq_A          343 SAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK  422 (689)
T ss_dssp             EEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCC
T ss_pred             ccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccc
Confidence            5432110 0                                      0113688888777665422              


Q ss_pred             -------------------------------CCcEEEecCCCCCC-CCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160          215 -------------------------------EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  262 (316)
Q Consensus       215 -------------------------------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  262 (316)
                                                     +|.|+.||+.++++ -+.+.+ ...... .....+.+++.++.|+.++.
T Consensus       423 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g-~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          423 RNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGG-TLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCC-EEEETTTEEEEECTTSEEEE
T ss_pred             ccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCc-cceECCCEEEEECCCCcEEE
Confidence                                           36788899988762 222111 111111 13345678888999999999


Q ss_pred             EEecccCcc
Q 021160          263 LRLQRRQTL  271 (316)
Q Consensus       263 w~~~~~~~~  271 (316)
                      ||.++++.+
T Consensus       501 ~D~~tG~~l  509 (689)
T 1yiq_A          501 YAADTGEKL  509 (689)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCccc
Confidence            999988554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=6.2e-07  Score=81.28  Aligned_cols=241  Identities=9%  Similarity=0.069  Sum_probs=134.0

Q ss_pred             ceeeEEEEeeCCCcceEEEec-cccccccCCCCccceEE-EEECCCCCcEEEEEec------CCcEEEEeCcCCcccCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCS-SFSENSKQPMNSIRLNA-IVIDPRNPNYFAVGGS------DEYARVYDIRKCHWYSPI   73 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~-~~~~~~~~~gh~~~v~~-~~~~~~~~~~l~~g~~------dg~v~~wd~~~~~~~~~~   73 (316)
                      +|.|..+|..+.+....+... ...       ....+.+ .... ++  .+++++.      ++.|+.+|..+++.....
T Consensus       137 dg~l~alD~~tG~~~W~~~~~~~~~-------~~~~~~~~p~v~-~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          137 DGRLIALDAATGKEVWHQNTFEGQK-------GSLTITGAPRVF-KG--KVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEETTTTCC-------SSCBCCSCCEEE-TT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCCEEeeecCCcCcC-------cCcccccCcEEE-CC--EEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            467888888887765555442 111       0011111 1111 23  4555543      689999999999865332


Q ss_pred             CCCCCce--------------ecc--ccccc-CCCcccEEEEEEccCCCeEEEe-cCC-------------------cEE
Q 021160           74 SSDTPVD--------------TFC--PRHLI-GKNNIHITGLAYSNTSELLISY-NDE-------------------LVY  116 (316)
Q Consensus        74 ~~~~~~~--------------~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~d~-------------------~i~  116 (316)
                      ....+..              .+.  -.... .+.......+++.|++.++..+ .++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            2111100              000  00000 0111122357788887755543 332                   488


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcC-------CceeeeEEEecCCC---cEEEEeccCCeEEEEeccCCee
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-------SQTVKGVNFFGPND---EYVMSGSDCGHLFIWKKKGGKL  186 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~---~~l~~~~~dg~v~~wd~~~~~~  186 (316)
                      .+|..++                +....+.....       .....-+.. ..+|   ..++.++.+|.++++|..+|+.
T Consensus       287 AlD~~TG----------------~~~W~~~~~~~d~wd~~~~~~p~l~~~-~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          287 ALDPDTG----------------KYKWHYQETPGDNWDYTSTQPMILADI-KIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             EECTTTC----------------CEEEEEESSTTCCSCCCCCSCCEEEEE-EETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             EEECCCC----------------CEEEEEecCCCcccccccCCCcEEEec-ccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            8888887                45444442111       001122222 3366   6889999999999999999998


Q ss_pred             EEEeecCc----------c-ce------------------------EEEEEcCCCCeEEEEeC-----------------
Q 021160          187 VRLMVGDR----------H-VV------------------------NQLEPHPHIPMFATCGI-----------------  214 (316)
Q Consensus       187 ~~~~~~~~----------~-~v------------------------~~~~~~p~~~~l~s~~~-----------------  214 (316)
                      +..+....          + .+                        ..++++|+..++.....                 
T Consensus       350 l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~  429 (677)
T 1kb0_A          350 ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQA  429 (677)
T ss_dssp             EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCC
T ss_pred             eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccc
Confidence            87664211          0 01                        14688998887766432                 


Q ss_pred             --------------------------CCcEEEecCCCCCC-CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          215 --------------------------EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       215 --------------------------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                                                .+.|..||+.++++ -+.+ +........ ...++.+++.++.|+.+++||..+
T Consensus       430 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~-~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          430 GPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGT-LTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             CTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCE-EEETTTEEEEECTTSEEEEEETTT
T ss_pred             cccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcc-eEeCCCEEEEECCCCcEEEEECCC
Confidence                                      26789999988762 1221 111121111 233566778889999999999988


Q ss_pred             cCcc
Q 021160          268 RQTL  271 (316)
Q Consensus       268 ~~~~  271 (316)
                      ++.+
T Consensus       508 G~~l  511 (677)
T 1kb0_A          508 GEKL  511 (677)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            7554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.65  E-value=1.3e-06  Score=79.12  Aligned_cols=53  Identities=9%  Similarity=0.025  Sum_probs=42.7

Q ss_pred             CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      |.|..||+.+++.+..++.. ..+....+...+..++.++.|+.+++||.++++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence            78999999999988877633 344445566677788888999999999999887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=2.2e-06  Score=67.69  Aligned_cols=178  Identities=11%  Similarity=0.030  Sum_probs=116.4

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      +.|+++|+.+.+....+......          ....+++.  +..++++.-.++.+.++|..+.+...           
T Consensus        44 s~v~~iD~~tg~v~~~i~l~~~~----------fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~-----------  100 (266)
T 2iwa_A           44 SSVRQVALQTGKVENIHKMDDSY----------FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK-----------  100 (266)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTC----------CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE-----------
T ss_pred             CEEEEEECCCCCEEEEEecCCCc----------ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE-----------
Confidence            57899999888766655542111          12245555  32566666678999999999887432           


Q ss_pred             ccccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eeeeEE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVN  158 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~  158 (316)
                         .+..+...   ...++++|+ ++++..++.|.++|..+.                +....+.....+.   .++.+.
T Consensus       101 ---~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~----------------~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A          101 ---NFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF----------------KLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             ---EEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC----------------CEEEEEECEETTEECCCEEEEE
T ss_pred             ---EEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC----------------cEEEEEEECCCCcccccceeEE
Confidence               11111011   123556776 445545789999999876                4555554322111   256788


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc-------------cceEEEEEcCCCCe-EEEEeCCCcEEEecCC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  224 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-------------~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~  224 (316)
                      | . ++...+..-.++.|.+.|..+++.+..+....             ...+.++|+|+++. ++++....++.+-++.
T Consensus       159 ~-~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          159 Y-I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             E-E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             E-E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            7 5 67655555568899999999999988886321             25689999999876 6677678888888876


Q ss_pred             CCC
Q 021160          225 PTD  227 (316)
Q Consensus       225 ~~~  227 (316)
                      ...
T Consensus       237 ~~~  239 (266)
T 2iwa_A          237 LVR  239 (266)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.59  E-value=5.7e-05  Score=63.26  Aligned_cols=220  Identities=8%  Similarity=-0.025  Sum_probs=121.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|..+|..+.+....+.....           ........  + ..+++++.++.|..+|..+++.........+...
T Consensus       112 ~g~l~a~d~~tG~~~W~~~~~~~-----------~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          112 KAQVYALNTSDGTVAWQTKVAGE-----------ALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS  177 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSC-----------CCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred             CCEEEEEECCCCCEEEEEeCCCc-----------eEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence            35677777776665433333211           01111122  3 4677888899999999998874322111110000


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc-----e---
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ-----T---  153 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---  153 (316)
                      .      .....+    ... ++.+++...++.+..+|..++                +....+.......     .   
T Consensus       178 ~------~~~~~~----~~~-~~~v~~g~~~g~l~~~d~~tG----------------~~~w~~~~~~~~~~~~~~~~~~  230 (376)
T 3q7m_A          178 L------RGESAP----TTA-FGAAVVGGDNGRVSAVLMEQG----------------QMIWQQRISQATGSTEIDRLSD  230 (376)
T ss_dssp             -------CCCCCC----EEE-TTEEEECCTTTEEEEEETTTC----------------CEEEEEECCC-----------C
T ss_pred             e------cCCCCc----EEE-CCEEEEEcCCCEEEEEECCCC----------------cEEEEEecccCCCCcccccccc
Confidence            0      000111    111 344555567899999999877                3433333211000     0   


Q ss_pred             e-eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC-CC
Q 021160          154 V-KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PL  231 (316)
Q Consensus       154 i-~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~-~~  231 (316)
                      + .....   .+..++.++.++.+..+|..+|+.+.....  .....+...  +..+..++.++.|..+|..+++.. ..
T Consensus       231 ~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          231 VDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             CCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             cCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEee
Confidence            0 11111   256777888899999999999998766542  233444443  556777778999999999887621 11


Q ss_pred             CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ..........  ....+..++.++.++.+..+|..+++..
T Consensus       304 ~~~~~~~~~~--~~~~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          304 SDLLHRLLTS--PVLYNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             CTTTTSCCCC--CEEETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCcccC--CEEECCEEEEEeCCCeEEEEECCCCcEE
Confidence            1011111000  0012457778888999999998887544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=6.4e-05  Score=58.81  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=100.9

Q ss_pred             eEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecC
Q 021160           37 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YND  112 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d  112 (316)
                      ...+.|+ ++ .++.+.+.+|  .|+.+|+.+++......            + .. ...-..++.  ++. +.+. -.+
T Consensus        45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~------------l-~~-~~FgeGit~--~g~~ly~ltw~~  106 (262)
T 3nol_A           45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIE------------L-GK-RYFGEGISD--WKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEE------------C-CT-TCCEEEEEE--ETTEEEEEESSS
T ss_pred             cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEe------------c-CC-ccceeEEEE--eCCEEEEEEeeC
Confidence            4788998 56 6777777766  89999999998532211            1 11 111123333  344 3333 369


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      +.+.+||..+.                +.+..+.....   -..+++   ++..|+....++.|.++|..+.+.+..+..
T Consensus       107 ~~v~v~D~~t~----------------~~~~ti~~~~e---G~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          107 GLGFVWNIRNL----------------RQVRSFNYDGE---GWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             SEEEEEETTTC----------------CEEEEEECSSC---CCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             CEEEEEECccC----------------cEEEEEECCCC---ceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            99999999887                67777765332   244543   566676666688999999999998887754


Q ss_pred             Cc-----cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          193 DR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       193 ~~-----~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ..     ..++.+.|. +++.++..-.+..|.+.|+++++
T Consensus       165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~  203 (262)
T 3nol_A          165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK  203 (262)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred             ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence            21     335567886 67666666578899999999886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=3.4e-06  Score=66.00  Aligned_cols=165  Identities=10%  Similarity=0.080  Sum_probs=104.6

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      ..|+++|+.+.+....+...            .......+.+.+..+++..-.++.+.+||..+.+....         +
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~------------~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t---------i  123 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELG------------KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS---------F  123 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECC------------TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE---------E
T ss_pred             ceEEEEECCCCcEEEEEecC------------CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE---------E
Confidence            37899999988876665542            12223222233435556666789999999998874321         1


Q ss_pred             ccccccCCCcccEEEEEEccCCCeE-EEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce---eeeEE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELL-ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT---VKGVN  158 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~  158 (316)
                      .     ...    ....+.++++.| ++..++.|.++|..+.                +....+....+...   ++.+.
T Consensus       124 ~-----~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~----------------~v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          124 N-----YDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESL----------------TPVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             E-----CSS----CCCCEEECSSCEEECCSSSEEEEECTTTC----------------SEEEEEECEETTEECCCEEEEE
T ss_pred             E-----CCC----CceEEecCCCEEEEECCCCeEEEEcCCCC----------------eEEEEEEeccCCccccccceeE
Confidence            1     111    112333566644 4434788999999877                55555554322122   45677


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC------------ccceEEEEEcCCCCeEEEEeCC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------------RHVVNQLEPHPHIPMFATCGIE  215 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~l~s~~~d  215 (316)
                      | . +|...+..-.+..|.+.|.++++.+..+...            ....+.+||+|+++.|...+..
T Consensus       179 ~-~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          179 W-V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             E-E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             E-E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            7 4 6766665557889999999999998887632            1245889999988886666643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.56  E-value=1.2e-05  Score=67.38  Aligned_cols=223  Identities=10%  Similarity=0.057  Sum_probs=122.1

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  127 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  127 (316)
                      ..+++++.++.|..+|..+++............      ........+.+.....++.+++.+.++.|+.+|..++    
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG----  123 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDG------WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG----  123 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---------CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTC----
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccc------cccccCcccccCceEeCCEEEEEcCCCEEEEEECCCC----
Confidence            467778888999999999887432211100000      0000012232222233455666678999999999887    


Q ss_pred             CccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccce-----EEEEE
Q 021160          128 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-----NQLEP  202 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v-----~~~~~  202 (316)
                                  +....+......  ...... .  +..++.++.++.+..+|..+|+.+..........     .....
T Consensus       124 ------------~~~W~~~~~~~~--~~~p~~-~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~  186 (376)
T 3q7m_A          124 ------------TVAWQTKVAGEA--LSRPVV-S--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT  186 (376)
T ss_dssp             ------------CEEEEEECSSCC--CSCCEE-E--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred             ------------CEEEEEeCCCce--EcCCEE-E--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence                        444444433211  222222 2  4578888899999999999999887765432111     12222


Q ss_pred             cCCCCeEEEEeCCCcEEEecCCCCCCC-CC--CCCc-----ccceeeeecCC--CCceeEEecCCCeEEEEEecccCcce
Q 021160          203 HPHIPMFATCGIEKTVKLWAPMPTDFP-PL--PDNA-----EKIMKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTLA  272 (316)
Q Consensus       203 ~p~~~~l~s~~~d~~i~iwd~~~~~~~-~~--~~~~-----~~~~~~~~~~~--~~~~~~s~~~d~~~~~w~~~~~~~~~  272 (316)
                      .  +..++.+..++.+..+|..+++.. ..  ....     ..+.... ..+  .+..+..++.++.+..+|..+++.. 
T Consensus       187 ~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~-  262 (376)
T 3q7m_A          187 A--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD-TTPVVVNGVVFALAYNGNLTALDLRSGQIM-  262 (376)
T ss_dssp             E--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCC-CCCEEETTEEEEECTTSCEEEEETTTCCEE-
T ss_pred             E--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccC-CCcEEECCEEEEEecCcEEEEEECCCCcEE-
Confidence            2  345677778899999999877621 11  1000     0000000 111  2445666677888888888776433 


Q ss_pred             eE-E------eecccccccccCCCCeEEEEeccCCC
Q 021160          273 YR-E------RRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       273 ~~-~------~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      +. .      .......+.....++.++.+|..+++
T Consensus       263 w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          263 WKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             EEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCC
T ss_pred             eeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCc
Confidence            22 1      11122333333455668888876665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.55  E-value=2.7e-06  Score=74.21  Aligned_cols=191  Identities=9%  Similarity=-0.019  Sum_probs=114.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEE-C-CCCCcEEEEEe------------------cCCcEEEE
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI-D-PRNPNYFAVGG------------------SDEYARVY   62 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~-~-~~~~~~l~~g~------------------~dg~v~~w   62 (316)
                      +.|.+.|+.+.+..+++.+...          .....+++ . |++ .++++++                  .++.+.+.
T Consensus       112 ~rVavIdl~t~~~~~ii~ip~g----------~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          112 TRVARVRCDVMKCDAILEIPNA----------KGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             TEEEEEETTTTEEEEEEECSSC----------CSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CEEEEEECCCceEeeEEeCCCC----------CCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEEEE
Confidence            3578888888887776655422          35778887 4 888 6777663                  34678999


Q ss_pred             eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec-C--------------CcEEEEEcCCCC--
Q 021160           63 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D--------------ELVYLFEKNMGL--  124 (316)
Q Consensus        63 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d--------------~~i~iwd~~~~~--  124 (316)
                      |..+.+..              .++.-+  .....++++|+|+++++ +. .              ..|.+.|.....  
T Consensus       181 D~~t~~v~--------------~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          181 DADKWEVA--------------WQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             ETTTTEEE--------------EEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             ECCCCeEE--------------EEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            99887632              222111  12345678899986555 32 2              225555543211  


Q ss_pred             -----CCCCccCCcccccc--CCC-cceeeCCcCCceeeeEEEecCCCcEEEEec-cCCeEEEEeccCCe----------
Q 021160          125 -----GPSPLSLSPEDLQK--REE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK----------  185 (316)
Q Consensus       125 -----~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~----------  185 (316)
                           ......+.+-+..+  .+. +..+....   ...++.+ +|||+++++++ .+.+|.++|+.+.+          
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~-sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNM-APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEE-CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEE-cCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence                 00001111122222  122 22333221   2577888 99999877665 58899999998653          


Q ss_pred             --eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          186 --LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       186 --~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                        ....+.. ......++|+|+|...++.-.|+.|.+||+..
T Consensus       321 ~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          321 SAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence              2333332 24578899999994466777899999999876

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.54  E-value=3e-05  Score=60.69  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=103.4

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCc
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDEL  114 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~  114 (316)
                      -...+.|+. + .++.+.+.+|.|+++|+++++....+             + .. ...-..+++.. +++++. -.++.
T Consensus        56 ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-------------l-~~-~~FgeGit~~g-~~Ly~ltw~~~~  117 (268)
T 3nok_A           56 FTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-------------R-LG-NIFAEGLASDG-ERLYQLTWTEGL  117 (268)
T ss_dssp             CEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-------------E-CT-TCCEEEEEECS-SCEEEEESSSCE
T ss_pred             ccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-------------C-CC-CcceeEEEEeC-CEEEEEEccCCE
Confidence            346888874 4 78888888899999999999843211             1 11 11112344432 234444 46999


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-  193 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-  193 (316)
                      +.+||..+.                +.+..+.....   -..+++   +++.|+.+..++.|.++|..+.+.+..+... 
T Consensus       118 v~V~D~~Tl----------------~~~~ti~~~~e---GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~  175 (268)
T 3nok_A          118 LFTWSGMPP----------------QRERTTRYSGE---GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL  175 (268)
T ss_dssp             EEEEETTTT----------------EEEEEEECSSC---CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred             EEEEECCcC----------------cEEEEEeCCCc---eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence            999999887                67777765332   245554   5677777777999999999999988877532 


Q ss_pred             -c---cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          194 -R---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       194 -~---~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                       .   ..++.+.|. +++.++..-.+..|.+-|+++++
T Consensus       176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence             1   245677887 67666666578899999999886

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.54  E-value=7.9e-05  Score=59.21  Aligned_cols=156  Identities=11%  Similarity=-0.009  Sum_probs=94.2

Q ss_pred             ccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc-EEEE
Q 021160           93 IHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS  169 (316)
Q Consensus        93 ~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~  169 (316)
                      .....++|++++. ++++. ..+.|..+++...                .....+.....  ....+++ ++++. +.++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~----------------~~~~~~~~~~~--~p~~ia~-d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------------EPTTIIRQDLG--SPEGIAL-DHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------------CCEEEECTTCC--CEEEEEE-ETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC----------------CcEEEEECCCC--CccEEEE-EecCCeEEEE
Confidence            3567999999765 55553 5889999998765                22222222222  2788998 77654 4455


Q ss_pred             eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-C--CCcEEEecCCCCCCCCCC-CCcccceeeeecC
Q 021160          170 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-I--EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQG  245 (316)
Q Consensus       170 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  245 (316)
                      -...+.|.++++..................++++|++..|..+. .  .+.|..+++.......+. ........++ +.
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia-~d  175 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT-FD  175 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEE-EE
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEE-Ec
Confidence            55678999999874332222222224678999999665544433 2  367888887654322221 1111222333 45


Q ss_pred             C-CCceeEEecCCCeEEEEEeccc
Q 021160          246 R-EDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       246 ~-~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      + .+.++++-...+.|.++++...
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEE
T ss_pred             CCCCEEEEEECCCCEEEEEecCCC
Confidence            5 4566777778889999987654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.50  E-value=2.5e-05  Score=60.49  Aligned_cols=153  Identities=8%  Similarity=0.034  Sum_probs=100.6

Q ss_pred             cceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  111 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  111 (316)
                      .-...+.|++ + .++.+.+.+  ..|+.+|+.+++......            + .. ...-..++... +++++. -.
T Consensus        21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~------------l-~~-~~fgeGi~~~~-~~ly~ltw~   83 (243)
T 3mbr_X           21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAE------------V-PP-PYFGAGIVAWR-DRLIQLTWR   83 (243)
T ss_dssp             CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEE------------C-CT-TCCEEEEEEET-TEEEEEESS
T ss_pred             cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEe------------C-CC-CcceeEEEEeC-CEEEEEEee
Confidence            3467899987 4 666776665  489999999998532211            1 11 11112333332 333333 36


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      ++.+.+||..+.                +.+..+.....   -..++.   ++..|+.+..++.|.++|..+.+.+..+.
T Consensus        84 ~~~v~v~D~~tl----------------~~~~ti~~~~~---Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           84 NHEGFVYDLATL----------------TPRARFRYPGE---GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             SSEEEEEETTTT----------------EEEEEEECSSC---CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEECCcC----------------cEEEEEeCCCC---ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            999999999887                67777765432   245543   56666666678999999999999888776


Q ss_pred             cCc-----cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          192 GDR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       192 ~~~-----~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ...     ..++.+.|. +++.++..-.+..|.+.|+++++
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~  181 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK  181 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred             EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence            422     345667776 66666665567899999998876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.50  E-value=3.7e-06  Score=69.02  Aligned_cols=187  Identities=11%  Similarity=0.022  Sum_probs=102.5

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  115 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  115 (316)
                      .+.++...+++  .+..++.++.|..+|.. ++...              .. ......+.++...+++.+++++  +.|
T Consensus       138 ~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~--------------~~-~~~~~~~~~~~~d~~g~l~v~t--~~l  197 (330)
T 3hxj_A          138 IYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKW--------------RF-KTNDAITSAASIGKDGTIYFGS--DKV  197 (330)
T ss_dssp             CCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEE--------------EE-ECSSCCCSCCEECTTCCEEEES--SSE
T ss_pred             eeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeE--------------EE-ecCCCceeeeEEcCCCEEEEEe--CEE
Confidence            34556666665  35667777888888887 54211              00 1112334556666777766666  788


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  195 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~  195 (316)
                      ..+| .++                +....+......  +.++.. .+++. +..++.++.+..++. +++.+..+.....
T Consensus       198 ~~~d-~~g----------------~~~~~~~~~~~~--~~~~~~-~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~  255 (330)
T 3hxj_A          198 YAIN-PDG----------------TEKWNFYAGYWT--VTRPAI-SEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKR  255 (330)
T ss_dssp             EEEC-TTS----------------CEEEEECCSSCC--CSCCEE-CTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred             EEEC-CCC----------------cEEEEEccCCcc--eeceEE-CCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence            8888 444                233333333322  677776 66664 555666778888874 4665655554444


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      .+..+.+.+++. |..++.++.|..+|........+......+ .......++ .+..++.+|.+++...+.
T Consensus       256 ~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~-~~~~~d~~g-~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          256 IESSPVIGNTDT-IYFGSYDGHLYAINPDGTEKWNFETGSWII-ATPVIDENG-TIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTCEEEEECTTSCEEEEEECSSCCC-SCCEECTTC-CEEEECTTSCEEEEEC--
T ss_pred             ccccceEcCCCe-EEEecCCCCEEEECCCCcEEEEEEcCCccc-cceEEcCCC-EEEEEcCCCeEEEEeccc
Confidence            444566665554 555666778888886322222111111111 111122333 455577788877776543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.50  E-value=1.4e-05  Score=62.51  Aligned_cols=161  Identities=9%  Similarity=-0.004  Sum_probs=104.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceE--EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLN--AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~--~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      .|.|+++|+.+.+....+ ...            ...  .+++.  +..++...-.++.+.+||..+.+...+       
T Consensus        74 ~g~v~~iD~~Tgkv~~~~-l~~------------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t-------  131 (268)
T 3nok_A           74 QGTLRQLSLESAQPVWME-RLG------------NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT-------  131 (268)
T ss_dssp             TTEEEECCSSCSSCSEEE-ECT------------TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE-------
T ss_pred             CCEEEEEECCCCcEEeEE-CCC------------CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE-------
Confidence            467999999998876666 431            222  35554  335666667889999999998874322       


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVK  155 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~  155 (316)
                        +..    .+. +  ..++  ++++.|+. ..++.|.++|..+.                +....+.....+.   .++
T Consensus       132 --i~~----~~e-G--wGLt--~Dg~~L~vSdGs~~l~~iDp~T~----------------~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          132 --TRY----SGE-G--WGLC--YWNGKLVRSDGGTMLTFHEPDGF----------------ALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             --EEC----SSC-C--CCEE--EETTEEEEECSSSEEEEECTTTC----------------CEEEEEECEETTEECCCEE
T ss_pred             --EeC----CCc-e--eEEe--cCCCEEEEECCCCEEEEEcCCCC----------------eEEEEEEeCCCCccccccc
Confidence              111    111 1  2333  56665544 35889999999887                5555555433222   256


Q ss_pred             eEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-------------ccceEEEEEcCCCCeEEEEe
Q 021160          156 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-------------RHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~l~s~~  213 (316)
                      .+.| . +|...+..-.+..|.+.|.++++.+..+...             ....+.+|++|+++.|...+
T Consensus       185 eLe~-~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          185 ELEC-A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEE-E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccEE-e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            6777 4 6766655557889999999999998887532             13568899999876655444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.49  E-value=8e-06  Score=74.19  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +|.|+.||+.+++.+..++.+. .+....+...+..++.++.|+.++.||.++++
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence            3789999999999988877554 23333555677788889999999999999987

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.47  E-value=0.00031  Score=57.37  Aligned_cols=222  Identities=8%  Similarity=-0.029  Sum_probs=126.4

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      ..|+..|+.+.+...++  ..          .....+++|++.+..++.+-...+.|..+++......      .     
T Consensus        10 ~~I~~i~~~~~~~~~~~--~~----------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------~-----   66 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI--PN----------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----   66 (316)
T ss_dssp             SSEEEEETTSCCCEEEE--CS----------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------
T ss_pred             CeEEEEECCCcceEehh--cC----------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------c-----
Confidence            35777787765543332  11          2357899999876456666667789999998752100      0     


Q ss_pred             ccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           83 CPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                      ....+..........+++.+.+ +++++ ...+.|.++++...                .....+.....  ....+++ 
T Consensus        67 ~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~----------------~~~~~~~~~~~--~P~~iav-  127 (316)
T 1ijq_A           67 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----------------KRKTLFRENGS--KPRAIVV-  127 (316)
T ss_dssp             -CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS----------------SEEEEEECTTC--CEEEEEE-
T ss_pred             ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC----------------ceEEEEECCCC--CcceEEe-
Confidence            0011111112334688888654 45556 46889999998754                22222222222  3788888 


Q ss_pred             cCCCcEEEEec-cC-CeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCCCCCCCC---
Q 021160          161 GPNDEYVMSGS-DC-GHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPD---  233 (316)
Q Consensus       161 ~~~~~~l~~~~-~d-g~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~---  233 (316)
                      .|.+..|+... .. +.|...++. |+....+. ..-.....++++|++..|. +-+..+.|..+|+.......+..   
T Consensus       128 dp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~  206 (316)
T 1ijq_A          128 DPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK  206 (316)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT
T ss_pred             CCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCC
Confidence            77655554443 33 688888876 44333332 2234678999998776654 44566789999987644322211   


Q ss_pred             CcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .......++.  .++.++++-...+.|..++..+++
T Consensus       207 ~~~~P~giav--~~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          207 RLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             TTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccCCcEEEEE--ECCEEEEEECCCCeEEEEeCCCCc
Confidence            1111223332  245677777777888877765443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.47  E-value=6.1e-06  Score=67.69  Aligned_cols=174  Identities=10%  Similarity=0.074  Sum_probs=100.9

Q ss_pred             EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCC
Q 021160           49 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSP  128 (316)
Q Consensus        49 ~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~  128 (316)
                      .+..++.++.|..+|.. ++...              .. ......+.++...+++.+++++.++.|..+|.. +     
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~--------------~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g-----  166 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKW--------------RF-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G-----  166 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEE--------------EE-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S-----
T ss_pred             EEEEEecCCEEEEEcCC-CCEEE--------------EE-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C-----
Confidence            45566666777777766 43110              00 111223444556667777777677888888887 5     


Q ss_pred             ccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe
Q 021160          129 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM  208 (316)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~  208 (316)
                                 +....+......  +.++.. .+++.++ .++  +.+..+| .+++...........+.++...+++.+
T Consensus       167 -----------~~~~~~~~~~~~--~~~~~~-d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l  228 (330)
T 3hxj_A          167 -----------TEKWRFKTNDAI--TSAASI-GKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI  228 (330)
T ss_dssp             -----------CEEEEEECSSCC--CSCCEE-CTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE
T ss_pred             -----------CEeEEEecCCCc--eeeeEE-cCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE
Confidence                       344444433322  666666 6677654 444  7899999 777777666655566888888888765


Q ss_pred             EEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          209 FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       209 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      . .++.++.+..++.....+..+..... ......... +..+..++.++.+..++.
T Consensus       229 ~-v~t~~~gl~~~~~~g~~~~~~~~~~~-~~~~~~~~~-~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          229 Y-VTSLDGHLYAINPDGTEKWRFKTGKR-IESSPVIGN-TDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             E-EEETTTEEEEECTTSCEEEEEECSSC-CCSCCEECT-TSCEEEECTTCEEEEECT
T ss_pred             E-EEcCCCeEEEECCCCCEeEEeeCCCC-ccccceEcC-CCeEEEecCCCCEEEECC
Confidence            4 45567788888854433222211111 111111222 335566677777888874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.47  E-value=2.4e-05  Score=71.88  Aligned_cols=194  Identities=10%  Similarity=0.086  Sum_probs=107.6

Q ss_pred             ceEEEEEC-CCCCcEEEEEe-cCC----cEEEEeCcCC-cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           36 RLNAIVID-PRNPNYFAVGG-SDE----YARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        36 ~v~~~~~~-~~~~~~l~~g~-~dg----~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      .+...+|+ |+| ++||.+. .+|    .|+++|+.++ +..             ...+    ......++|+|+|+.|+
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-------------~~~~----~~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTI-------------ADKV----SGTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCC-------------CCCE----EEECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeC-------------Cccc----cCceeeEEEecCCCEEE
Confidence            67889999 999 6666543 333    4999999987 521             0001    11134688999998554


Q ss_pred             E-ecC-----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CCeEEEE
Q 021160          109 S-YND-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIW  179 (316)
Q Consensus       109 s-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~~w  179 (316)
                      . ..+     ..|+++++.++..              .....+..... .....+.| +|+|++|+..+.   ...|+++
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~~--------------~~~lv~~~~~~-~~~~~~~~-SpDg~~l~~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQS--------------EDVCLYEEHNP-LFSAFMYK-AADTNTLCIGSQSPETAEVHLL  300 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCGG--------------GCEEEEECCCT-TCEEEEEE-CTTSSEEEEEEECSSCEEEEEE
T ss_pred             EEEECCCCCCCEEEEEECCCCch--------------hcEEEEecCCC-ceEEEEEE-CCCCCEEEEEecCCCCceEEEE
Confidence            4 433     2578888766510              01122322211 22567788 999998887653   4468889


Q ss_pred             eccCC--ee-EEEe-ecCccceEEEEEcCCCCeEEEEeCC----CcEEEecCCC-CCCCC-CCCCccc--ceeeeecCCC
Q 021160          180 KKKGG--KL-VRLM-VGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMP-TDFPP-LPDNAEK--IMKANKQGRE  247 (316)
Q Consensus       180 d~~~~--~~-~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~iwd~~~-~~~~~-~~~~~~~--~~~~~~~~~~  247 (316)
                      |+.++  +. +..+ ........++.|+..+.+++....+    ..|..+++.+ ..... +..+...  +.... + ..
T Consensus       301 d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~-~-~~  378 (751)
T 2xe4_A          301 DLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA-V-RS  378 (751)
T ss_dssp             ESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE-E-CS
T ss_pred             ECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE-E-EC
Confidence            98865  22 1333 3334455666655444444444443    2566667664 33333 3223222  11222 1 24


Q ss_pred             CceeEEecCCCeEEEEEe
Q 021160          248 DHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       248 ~~~~~s~~~d~~~~~w~~  265 (316)
                      +.++++...++..+++-+
T Consensus       379 ~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          379 NYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             SEEEEEEEETTEEEEEEE
T ss_pred             CEEEEEEEeCCEEEEEEE
Confidence            556677777776665543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.46  E-value=0.00014  Score=59.48  Aligned_cols=221  Identities=9%  Similarity=-0.056  Sum_probs=127.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      ..|+.+|+........+....          .....+++|++.+..++.+-...+.|..+++.....             
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~----------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-------------   69 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGG----------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-------------   69 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEE----------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-------------
T ss_pred             CeEEEEECCCCceEEEEEecC----------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-------------
Confidence            457777776653222222221          124678999986646666666778899998875531             


Q ss_pred             ccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNF  159 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~  159 (316)
                       ...+....-.....+++.+.+ +++++ ...+.|.+++++..                 ....+. ....  ....+++
T Consensus        70 -~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-----------------~~~~l~~~~~~--~P~giav  129 (318)
T 3sov_A           70 -VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-----------------LRKVLFWQELD--QPRAIAL  129 (318)
T ss_dssp             -CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-----------------SCEEEECSSCS--SEEEEEE
T ss_pred             -eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-----------------cEEEEEeCCCC--CccEEEE
Confidence             000001111235578888754 45555 46788999998764                 222332 2222  2788888


Q ss_pred             ecCCCcEEEEec--cCCeEEEEeccCCeeEEEe-ecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCCCCC-C
Q 021160          160 FGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPD-N  234 (316)
Q Consensus       160 ~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~-~  234 (316)
                       .|.+.+|+...  ..+.|...++.. +....+ ...-...+.++++|++..| ++-+..+.|..+++.......+.. .
T Consensus       130 -dp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~  207 (318)
T 3sov_A          130 -DPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS  207 (318)
T ss_dssp             -EGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC
T ss_pred             -eCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC
Confidence             77655555544  357888888763 333333 2223456899999966654 454567789999987644322211 1


Q ss_pred             cccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ......++.  .++.++.+-...+.|..++..+++.
T Consensus       208 ~~~P~glav--~~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          208 LPHPFALTL--FEDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CSCEEEEEE--ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCceEEEE--eCCEEEEEecCCCeEEEEECCCCCc
Confidence            111222221  1345666766778788777655543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.45  E-value=8.3e-06  Score=67.97  Aligned_cols=102  Identities=6%  Similarity=-0.206  Sum_probs=66.1

Q ss_pred             cEEEEEecCC----cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec-----------C
Q 021160           48 NYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----------D  112 (316)
Q Consensus        48 ~~l~~g~~dg----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----------d  112 (316)
                      ..+++...++    .|.++|..+++.              ...+..+. .+  .+.++|+++.+..++           +
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v--------------~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~   95 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVT--------------LGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEE--------------EEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeE--------------EEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCC
Confidence            3444444444    788999999873              22332232 34  699999998554432           6


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC-----CceeeeEEEecCCCcEEEEecc--CCeEEE--EeccC
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDEYVMSGSD--CGHLFI--WKKKG  183 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~--dg~v~~--wd~~~  183 (316)
                      +.|.+||+.+.                +....+.....     ......+++ +|+|++++++..  ...+.+  +|+.+
T Consensus        96 ~~VsviD~~T~----------------~vv~~I~v~~~~~~~~g~~P~~ia~-SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           96 DYVEVFDPVTF----------------LPIADIELPDAPRFSVGPRVHIIGN-CASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEECTTTC----------------CEEEEEEETTSCSCCBSCCTTSEEE-CTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CEEEEEECCCC----------------CEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            78999999988                56666643200     011456777 899988888764  456777  77643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.41  E-value=6.2e-05  Score=61.67  Aligned_cols=170  Identities=12%  Similarity=0.059  Sum_probs=101.0

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee--cccc---cccCCCcccEEEEEEcc-CCCeEEE
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT--FCPR---HLIGKNNIHITGLAYSN-TSELLIS  109 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~i~~~~~~~-~~~~l~s  109 (316)
                      ...++++++++ +++.++..++.|..|+..+++..... .......  .+..   ............+++.+ +++++++
T Consensus        20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFA-YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEE-ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEe-cccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            34678999988 77788888899999998765421000 0000000  0000   00000123478899997 7777777


Q ss_pred             ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc---CCceeeeEEEecC-CCcEEEEecc-------------
Q 021160          110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVNFFGP-NDEYVMSGSD-------------  172 (316)
Q Consensus       110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~-~~~~l~~~~~-------------  172 (316)
                      ...+.|..+|..++                 ....+....   .......+++ .+ +|.+.++-..             
T Consensus        98 d~~~~i~~~d~~~g-----------------~~~~~~~~~~~~~~~~p~~i~~-d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           98 DCYYHLSVVGSEGG-----------------HATQLATSVDGVPFKWLYAVTV-DQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             ETTTEEEEECTTCE-----------------ECEEEESEETTEECSCEEEEEE-CTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             ECCCCEEEEeCCCC-----------------EEEEecccCCCCcccccceEEE-ecCCCEEEEECCcccccccccceehc
Confidence            55555888887654                 122222111   0112678888 88 8877666432             


Q ss_pred             ----CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCC
Q 021160          173 ----CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPT  226 (316)
Q Consensus       173 ----dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~  226 (316)
                          ++.|..+|..+++....... -.....++++|+++.|. +-...+.|.+|++...
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence                36789999877765333222 23456799999998654 4456688999998754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=3.1e-05  Score=59.98  Aligned_cols=164  Identities=12%  Similarity=0.022  Sum_probs=103.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      ..|+++|+.+.+....+......          ---.+++.  +..++...-.++.+.+||..+.+...+         +
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~----------fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~t---------i  101 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPY----------FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRAR---------F  101 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTC----------CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEE---------E
T ss_pred             ceEEEEECCCCCEEEEEeCCCCc----------ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEE---------E
Confidence            37899999888776665543111          11233443  335666667889999999998874321         1


Q ss_pred             ccccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eeeeEE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVN  158 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~  158 (316)
                      .     ....+  ..++  +++. ++++-.++.|.++|..+.                +....+.....+.   .++.+.
T Consensus       102 ~-----~~~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~----------------~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X          102 R-----YPGEG--WALT--SDDSHLYMSDGTAVIRKLDPDTL----------------QQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             E-----CSSCC--CEEE--ECSSCEEEECSSSEEEEECTTTC----------------CEEEEEECEETTEECCCEEEEE
T ss_pred             e-----CCCCc--eEEe--eCCCEEEEECCCCeEEEEeCCCC----------------eEEEEEEEccCCcccccceeeE
Confidence            1     11111  2333  4565 555545888999999887                5555555432211   255667


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-------------ccceEEEEEcCCCCeEEEEeC
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-------------RHVVNQLEPHPHIPMFATCGI  214 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~l~s~~~  214 (316)
                      + . +|...+..-.+..|.+.|.++++.+..+...             ....+.+|++|+++.|...+.
T Consensus       157 ~-~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          157 W-V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             E-E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             E-e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            6 3 6666655556889999999999998887522             135688999998877655553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.37  E-value=3.1e-05  Score=67.73  Aligned_cols=186  Identities=9%  Similarity=0.002  Sum_probs=117.0

Q ss_pred             CCCCcEEEEE-ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEE-c-cCCCeEEEec---------
Q 021160           44 PRNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-S-NTSELLISYN---------  111 (316)
Q Consensus        44 ~~~~~~l~~g-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~s~~---------  111 (316)
                      ++| +++.+. ..+..|.+.|+.+.++...            ..+..  ......+++ . |+++++..+.         
T Consensus        99 ~DG-~~lfVnd~~~~rVavIdl~t~~~~~i------------i~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~d  163 (595)
T 1fwx_A           99 YDG-RFLFMNDKANTRVARVRCDVMKCDAI------------LEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVND  163 (595)
T ss_dssp             EEE-EEEEEEETTTTEEEEEETTTTEEEEE------------EECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cCC-CEEEEEcCCCCEEEEEECCCceEeeE------------EeCCC--CCCCcceeeeecCCCcEEEEecccccccCCC
Confidence            377 555554 4567799999999873321            02211  234667777 4 7887655541         


Q ss_pred             ----------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC-------
Q 021160          112 ----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-------  174 (316)
Q Consensus       112 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------  174 (316)
                                ++.+.+.|..+.                +....+....+   ...+++ +|+|+++++.+.+.       
T Consensus       164 g~~l~~~~~~~~~vtvID~~t~----------------~v~~qI~Vgg~---pd~~~~-spdGk~~~vt~~~se~~~~i~  223 (595)
T 1fwx_A          164 GTNMEDVANYVNVFTAVDADKW----------------EVAWQVLVSGN---LDNCDA-DYEGKWAFSTSYNSEKGMTLP  223 (595)
T ss_dssp             SSSTTCGGGEEEEEEEEETTTT----------------EEEEEEEESSC---CCCEEE-CSSSSEEEEEESCTTCCSSHH
T ss_pred             CcccccccccCceEEEEECCCC----------------eEEEEEEeCCC---ccceEE-CCCCCEEEEEecCcccCcchh
Confidence                      446888888776                45544442222   345666 88888888877543       


Q ss_pred             -------------------------------eEEEEeccC--Cee-EEEeecCccceEEEEEcCCCCeEE-EEeCCCcEE
Q 021160          175 -------------------------------HLFIWKKKG--GKL-VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVK  219 (316)
Q Consensus       175 -------------------------------~v~~wd~~~--~~~-~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~  219 (316)
                                                     .|.+.|..+  ++. +..++.. ....++.++|||++++ ++..+.+|.
T Consensus       224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~Vs  302 (595)
T 1fwx_A          224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVT  302 (595)
T ss_dssp             HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred             hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEE
Confidence                                           366666665  444 4444432 2456799999999855 555788999


Q ss_pred             EecCCCCC-------------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          220 LWAPMPTD-------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       220 iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      ++|+.+.+             ..++... ....-.+ +++++...++.--|+.+.+|++..
T Consensus       303 Vid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~a-F~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          303 VLDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTA-FDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEE-ECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEECcccccccccccCcccceEEEcCCC-CCcceEE-ECCCCeEEEEEecCCcEEEEEhhH
Confidence            99998542             1122111 1222333 677777777888899999999887

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.37  E-value=0.00041  Score=54.41  Aligned_cols=168  Identities=8%  Similarity=0.048  Sum_probs=103.4

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+..++|+|++..++++...++.|...|.. ++..              ..+...-......+++.+++.++++. .+
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~--------------~~i~l~g~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI--------------RTIPLDFVKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE--------------EEEECSSCSSEEEEEECSTTEEEEEETTT
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE--------------EEEecCCCCChHHeEEeCCCEEEEEECCC
Confidence            45799999999874677778888999999987 6532              11111112457788998888876775 57


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc---CCeeEEE
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLVRL  189 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~---~~~~~~~  189 (316)
                      +.+.++++.....       ...+.....  .+...........++| +|.++.|.++.+.....+|.+.   ....+..
T Consensus        91 ~~l~~~~v~~~~~-------i~~~~~~~~--~~~~~~~N~g~EGLA~-d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i  160 (255)
T 3qqz_A           91 YAIYVISLTPNSE-------VKILKKIKI--PLQESPTNCGFEGLAY-SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI  160 (255)
T ss_dssp             TEEEEEEECTTCC-------EEEEEEEEC--CCSSCCCSSCCEEEEE-ETTTTEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred             CcEEEEEcCCCCe-------eeeeeeecc--ccccccccCCcceEEE-eCCCCEEEEEECcCCceEEEEcccccCCceee
Confidence            8899998865410       000000000  0100111123789999 8888777777766555555554   1112222


Q ss_pred             ee-------cCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160          190 MV-------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       190 ~~-------~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~  226 (316)
                      +.       .+...+..++++|.... ++.....+.+.++|....
T Consensus       161 ~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          161 SKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             EECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             ecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence            21       12345788999997655 556667778889998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.35  E-value=0.00039  Score=57.67  Aligned_cols=196  Identities=8%  Similarity=-0.070  Sum_probs=115.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~  113 (316)
                      ...+++|++.+..++.+-...+.|..+++.....               ..+..........+++.+.+ +++++ ...+
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---------------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---------------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCc---------------eEEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence            4678999986645666666778898898875531               01111112334678888755 45555 3578


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccC-CeEEEEeccCCeeEEEe-
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDC-GHLFIWKKKGGKLVRLM-  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d-g~v~~wd~~~~~~~~~~-  190 (316)
                      .|.+.+++..                .....+.....  ....+++ .|.+..|+ +-... +.|..+++... ....+ 
T Consensus       139 ~I~~~~~dG~----------------~~~~l~~~~l~--~P~~iav-dp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~  198 (349)
T 3v64_C          139 RIEVANLDGA----------------HRKVLLWQSLE--KPRAIAL-HPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIA  198 (349)
T ss_dssp             EEEEEETTSC----------------SCEEEECTTCS--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSC-SCEESC
T ss_pred             eEEEEcCCCC----------------ceEEEEeCCCC--CcceEEE-ecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEE
Confidence            8999998764                22222222222  2788888 77555444 44444 78888888643 33333 


Q ss_pred             ecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          191 VGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ...-...+.++++|++..| ++-...+.|..+++.......+ .........++.  .++.++++-...+.|...+..++
T Consensus       199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCC
Confidence            2223457899999876664 4445667899999876542221 111112222332  34566777777777777764344

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.35  E-value=0.00028  Score=59.35  Aligned_cols=197  Identities=7%  Similarity=-0.103  Sum_probs=115.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~  113 (316)
                      ....++|++.+..++.+-...+.|..+++......               .+..........+++.+.+. ++++ ...+
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------------EEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence            47789999866456666667788999998755311               11011122345688887554 5555 3577


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEe-ccC-CeEEEEeccCCeeEEEee
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDC-GHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d-g~v~~wd~~~~~~~~~~~  191 (316)
                      .|.+.+++..                .....+......  ...+++ .|.+..|+.. ... +.|..+++..........
T Consensus       182 ~I~~~~~dg~----------------~~~~l~~~~l~~--P~giav-dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          182 RIEVANLDGA----------------HRKVLLWQSLEK--PRAIAL-HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             EEEECBTTSC----------------SCEEEECSSCSC--EEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             eEEEEeCCCC----------------ceEEeecCCCCC--CcEEEE-EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            8888887654                222222222222  788888 7766555444 334 788888887433332233


Q ss_pred             cCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCCCC-CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          192 GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ..-...+.|+|+|++..| ++-+..+.|..+++.......+. ........++.  .++.++++-...+.|..++..++
T Consensus       243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCC
Confidence            333457899999866654 45556678999998764422221 11112223332  34567777777777777774444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.32  E-value=0.00011  Score=60.26  Aligned_cols=197  Identities=9%  Similarity=0.067  Sum_probs=110.9

Q ss_pred             ceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCeEEEec--
Q 021160           36 RLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN--  111 (316)
Q Consensus        36 ~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~--  111 (316)
                      .+..+++.+ ++ ++++ +...+.|..+|..+++..          .+.. ............+++.+ +|+++++..  
T Consensus        81 ~p~gi~~~~~~g-~l~v-~d~~~~i~~~d~~~g~~~----------~~~~-~~~~~~~~~p~~i~~d~~~G~l~v~d~~~  147 (322)
T 2fp8_A           81 RTYDISYNLQNN-QLYI-VDCYYHLSVVGSEGGHAT----------QLAT-SVDGVPFKWLYAVTVDQRTGIVYFTDVST  147 (322)
T ss_dssp             CEEEEEEETTTT-EEEE-EETTTEEEEECTTCEECE----------EEES-EETTEECSCEEEEEECTTTCCEEEEESCS
T ss_pred             CCceEEEcCCCC-cEEE-EECCCCEEEEeCCCCEEE----------Eecc-cCCCCcccccceEEEecCCCEEEEECCcc
Confidence            478899998 55 4444 444455888887655311          1100 00001113467899999 998777632  


Q ss_pred             ----------------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEe-ccCC
Q 021160          112 ----------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCG  174 (316)
Q Consensus       112 ----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg  174 (316)
                                      ++.|..||..++                .. ..+......  ...+++ ++++++|+.+ +..+
T Consensus       148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~----------------~~-~~~~~~~~~--p~gia~-~~dg~~lyv~d~~~~  207 (322)
T 2fp8_A          148 LYDDRGVQQIMDTSDKTGRLIKYDPSTK----------------ET-TLLLKELHV--PGGAEV-SADSSFVLVAEFLSH  207 (322)
T ss_dssp             SCCTTCHHHHHHHTCCCEEEEEEETTTT----------------EE-EEEEEEESC--CCEEEE-CTTSSEEEEEEGGGT
T ss_pred             cccccccceehcccCCCceEEEEeCCCC----------------EE-EEeccCCcc--CcceEE-CCCCCEEEEEeCCCC
Confidence                            266888887654                22 222211112  567888 8999866554 6678


Q ss_pred             eEEEEeccCCe--eEEEeecCccceEEEEEcCCCCeEEEEeC----------CCcEEEecCCCCCCCCCCCC----cccc
Q 021160          175 HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGI----------EKTVKLWAPMPTDFPPLPDN----AEKI  238 (316)
Q Consensus       175 ~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~----~~~~  238 (316)
                      .|..|++....  ....+....+ ...+++.++|++.++...          .+.|..+|.....+..+...    ...+
T Consensus       208 ~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~  286 (322)
T 2fp8_A          208 QIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHF  286 (322)
T ss_dssp             EEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCC
T ss_pred             eEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccc
Confidence            99999987421  1112211223 778999999987666543          45678888754322222111    1112


Q ss_pred             eeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          239 MKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ..+. . .++.+.++....+.|..+++..+
T Consensus       287 ~~~~-~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          287 EQIQ-E-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             CEEE-E-ETTEEEEECSSCSEEEEEEC---
T ss_pred             eEEE-E-eCCEEEEeecCCCceEEEecccc
Confidence            2222 1 35666777767777787776544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.32  E-value=2.1e-05  Score=71.16  Aligned_cols=224  Identities=8%  Similarity=0.015  Sum_probs=117.7

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      .+.+||+.+++..++......        +.....++++.+++ .+++.|+ .+..+.+||..+.++....         
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~--------~~~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~---------  281 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTK--------HDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGP---------  281 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECS--------CCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECC---------
T ss_pred             EEEEEeCCCCcEEeCcccCCC--------CCCccccccCCCCC-CEEEeCCCCCCceEEecCcCCceeECC---------
Confidence            577888877765444332211        22234457778888 7888887 4568999999987754221         


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEec--C-----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC---cCCc
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISYN--D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQ  152 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  152 (316)
                         .+..  ...-.+++..+++++++.+.  +     ..+.+||..+..                 ...+...   .-..
T Consensus       282 ---~~~~--~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~-----------------W~~~~~~~~~p~~~  339 (656)
T 1k3i_A          282 ---DMQV--ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-----------------WTSLPNAKVNPMLT  339 (656)
T ss_dssp             ---CCSS--CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-----------------EEEETTSCSGGGCC
T ss_pred             ---CCCc--cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc-----------------ceeCCCcccccccc
Confidence               1101  11123455667888777643  3     468999987651                 1111000   0000


Q ss_pred             eeeeEEEecCCCcEEEEecc---------CCeEEEEeccCCeeEEEeecCcc---------ceEEEEEcC-CCCeEEEEe
Q 021160          153 TVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRH---------VVNQLEPHP-HIPMFATCG  213 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~---------dg~v~~wd~~~~~~~~~~~~~~~---------~v~~~~~~p-~~~~l~s~~  213 (316)
                      .-....+ ..++..++.|+.         ...+..||..+.........+..         .-.++.+.. ++++++.|+
T Consensus       340 ~~~~~~~-~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG  418 (656)
T 1k3i_A          340 ADKQGLY-RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGG  418 (656)
T ss_dssp             CCTTGGG-TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECC
T ss_pred             cccccee-ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeC
Confidence            0000001 233333344433         34678888877654433322211         223444443 677788887


Q ss_pred             CCC-----------cEEEecCCCCCCCCCC---CCcccceeeeecCCCCceeEEecCC-----------CeEEEEEeccc
Q 021160          214 IEK-----------TVKLWAPMPTDFPPLP---DNAEKIMKANKQGREDHSRITLTPD-----------VIMHVLRLQRR  268 (316)
Q Consensus       214 ~d~-----------~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d-----------~~~~~w~~~~~  268 (316)
                      .++           .|.+||+.+.....+.   -........+...+++.+++.++.+           ..+.+||..+.
T Consensus       419 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          419 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence            543           6888998876522111   1111222222244577888888754           46788887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.27  E-value=0.00061  Score=57.60  Aligned_cols=202  Identities=7%  Similarity=-0.027  Sum_probs=116.7

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YND  112 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d  112 (316)
                      ..+.+++|++.+..++.+-...+.|+.+++......      .     ....+..........+++.+.+ +++++ ...
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------~-----~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~  180 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL  180 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------------C-----CCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------C-----cceEEEeCCCCCcccEEEEecCCceEEEECCC
Confidence            467899999876456666567788888888642100      0     0111112223456788998744 45555 457


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec--cCCeEEEEeccCCeeEEEe
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~  190 (316)
                      +.|.+.+++..                .....+.....  ....+++ .|.+.+|+...  ..+.|...++........+
T Consensus       181 ~~I~~~~~~g~----------------~~~~l~~~~~~--~P~~iav-dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          181 GTVSVADTKGV----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             TEEEEECTTTC----------------SEEEEEECSSC--CEEEEEE-ETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             CeEEEEeCCCC----------------ceEEEEeCCCC--CcceEEE-ecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            88999988765                22222332222  2788998 77655555543  2477888888743333333


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCCCCCCCC---CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          191 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ...-...+.|+++|++..|..+ ...+.|..+|+.......+..   .......++.  .++.++.+-...+.|..++..
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence            3333567899999877765544 456789999987654332211   1111222221  244566666666777777744


Q ss_pred             cc
Q 021160          267 RR  268 (316)
Q Consensus       267 ~~  268 (316)
                      ++
T Consensus       320 ~G  321 (400)
T 3p5b_L          320 TG  321 (400)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.24  E-value=0.00065  Score=55.12  Aligned_cols=223  Identities=11%  Similarity=0.016  Sum_probs=123.8

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c-CC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d~  113 (316)
                      ....++|++++ +++++-..++.|..||......             ....    .......+++.++|+++++. . ++
T Consensus        33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-------------~~~~----~~~~p~gia~~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-------------IHAT----VEGKVSGLAFTSNGDLVATGWNADS   94 (306)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-------------EEEE----CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-------------EEEe----CCCCceeEEEcCCCcEEEEeccCCc
Confidence            46789999988 6777766789999998764321             0001    12357889999999977774 3 22


Q ss_pred             -cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EEEee
Q 021160          114 -LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMV  191 (316)
Q Consensus       114 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~  191 (316)
                       .|..+|..++                +. ..+...........++. .+++..+++-..++.|+.+|..+++. +....
T Consensus        95 ~~v~~~d~~~g----------------~~-~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~  156 (306)
T 2p4o_A           95 IPVVSLVKSDG----------------TV-ETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH  156 (306)
T ss_dssp             CEEEEEECTTS----------------CE-EEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEcCCCC----------------eE-EEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence             4777776665                22 22221111112345554 45555555555688999999876532 21111


Q ss_pred             ---------cCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCC-CCCCCCCCC--cccceeeeecCCCCceeEEecCCC
Q 021160          192 ---------GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMP-TDFPPLPDN--AEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       192 ---------~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                               ..-...+.+  +|+++.| ++-...+.|..+++.. +.+......  ......+ ...+++++.++....+
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi-~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDF-AFDVEGNLYGATHIYN  233 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSE-EEBTTCCEEEECBTTC
T ss_pred             CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCe-EECCCCCEEEEeCCCC
Confidence                     011234455  7888764 5555678899999875 322111000  0011112 2445677777777778


Q ss_pred             eEEEEEecccCcceeE--Eee-ccccccccc---CCCCeEEEEecc
Q 021160          259 IMHVLRLQRRQTLAYR--ERR-YNAADFESD---EEEGETYLLGFS  298 (316)
Q Consensus       259 ~~~~w~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~v~~~~~~  298 (316)
                      .|.+++.. ++.....  ... .....++.+   .+.+++|+....
T Consensus       234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            88888754 3221111  111 122334433   455779988875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.22  E-value=3.1e-05  Score=70.15  Aligned_cols=107  Identities=12%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             CCc---EEEEeccCCeEEEEeccCCeeEEEeecCc-----------c-c------------------------eEEEEEc
Q 021160          163 NDE---YVMSGSDCGHLFIWKKKGGKLVRLMVGDR-----------H-V------------------------VNQLEPH  203 (316)
Q Consensus       163 ~~~---~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-----------~-~------------------------v~~~~~~  203 (316)
                      +|+   .++.++.+|.++++|..+|+++...+...           . +                        -..++++
T Consensus       310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d  389 (668)
T 1kv9_A          310 DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN  389 (668)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceEC
Confidence            554   68899999999999999999875443211           0 0                        0125677


Q ss_pred             CCCCeEEEE------------------------------------eCCCcEEEecCCCCCC-CCCCCCcccceeeeecCC
Q 021160          204 PHIPMFATC------------------------------------GIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       204 p~~~~l~s~------------------------------------~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~  246 (316)
                      |+...+...                                    ..++.|..||+.+++. -+.. ........ ....
T Consensus       390 p~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~~-~~~t  467 (668)
T 1kv9_A          390 PGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-YPTHWNGG-TLST  467 (668)
T ss_dssp             TTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-ESSSCCCC-EEEE
T ss_pred             CCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-CCCCCcCc-eeEe
Confidence            766554331                                    1247788899888762 1111 11111111 1223


Q ss_pred             CCceeEEecCCCeEEEEEecccCcc
Q 021160          247 EDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       247 ~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .+.+++.++.|+.++.||..+++.+
T Consensus       468 ~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          468 AGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCEEEEECCcccchhhhhhcChhh
Confidence            5668888899999999998887554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.17  E-value=0.00071  Score=57.83  Aligned_cols=153  Identities=12%  Similarity=0.136  Sum_probs=91.7

Q ss_pred             ceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecC-
Q 021160           36 RLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND-  112 (316)
Q Consensus        36 ~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d-  112 (316)
                      ....++|+|+  +..++++ ...+.|+.+|..++++.               .+ .........++++++|+++++... 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~---------------~~-~~~~~~P~giavd~dG~lyVad~~~  202 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVD---------------IK-TTNIGQCADVNFTLNGDMVVVDDQS  202 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEE---------------EE-CCCCSCEEEEEECTTCCEEEEECCS
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEE---------------Ee-ecCCCCccEEEECCCCCEEEEcCCC
Confidence            4568999985  3244444 33388999999777521               11 112345789999999996666432 


Q ss_pred             ---C-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEEeccCCeeE
Q 021160          113 ---E-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       113 ---~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                         . .+...+.....               .....+. ...  ....+++ ++ ++.+.++-..++.|+.++..++...
T Consensus       203 ~~~~~gv~~~~~~~~~---------------~~~~~~~-~~~--~P~giav-d~~~G~lyv~d~~~~~V~~~d~~~g~~~  263 (433)
T 4hw6_A          203 SDTNTGIYLFTRASGF---------------TERLSLC-NAR--GAKTCAV-HPQNGKIYYTRYHHAMISSYDPATGTLT  263 (433)
T ss_dssp             CTTSEEEEEECGGGTT---------------CCEEEEE-ECS--SBCCCEE-CTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred             CcccceEEEEECCCCe---------------ecccccc-ccC--CCCEEEE-eCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence               1 23333332220               0001122 111  2566777 77 6766666667889999999877763


Q ss_pred             EEe-ec-CccceEEEEEcCCCCe-EEEEeCCCcEEEecCC
Q 021160          188 RLM-VG-DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  224 (316)
Q Consensus       188 ~~~-~~-~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~  224 (316)
                      ..+ .. .......++|+|+++. +++-...+.|+.+++.
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            333 21 1223356999999985 5555567789987754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.15  E-value=0.0012  Score=61.02  Aligned_cols=200  Identities=13%  Similarity=0.133  Sum_probs=123.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccccc-CCCcccEEEEEEccCCCeEEEecC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~d  112 (316)
                      ...|.++...++|  .+-.|+.++.|..|+..+....          .+...... .-....|.++...++|.+.+++.+
T Consensus       309 ~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~----------~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~  376 (795)
T 4a2l_A          309 QRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFK----------NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTND  376 (795)
T ss_dssp             SSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSE----------EECCCTTSSSCSCSSEEEEEECTTSCEEEEESS
T ss_pred             CCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccce----------EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECC
Confidence            4579999999987  3566777788999987655321          11000000 112456899999999998888777


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-------cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-------RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~  185 (316)
                      +-|..|+..++                 ....+...       .....|.++.. .+++.+|..|+.++-+..+|..+++
T Consensus       377 ~Gl~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          377 GGLNLYNPITQ-----------------RFTSYTLQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             SCEEEECTTTC-----------------CEEEECCC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             CCeEEEcCCCC-----------------cEEEEecCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCc
Confidence            77999998764                 12222110       01123888887 7788756777877889999998876


Q ss_pred             eEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC-------CcccceeeeecCCCCceeEEe
Q 021160          186 LVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-------NAEKIMKANKQGREDHSRITL  254 (316)
Q Consensus       186 ~~~~~~----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~  254 (316)
                      ......    .....|.++...+++.+.+...  +-+.+|+..+++...+..       ....+..+. ...++.+.+..
T Consensus       439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~d~~g~lWigt  515 (795)
T 4a2l_A          439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF-RDSHKRLWIGG  515 (795)
T ss_dssp             EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE-ECTTCCEEEEE
T ss_pred             EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEE-ECCCCCEEEEe
Confidence            443321    1245789999888887655443  458889987765322221       112333333 44556555554


Q ss_pred             cCCCeEEEEEeccc
Q 021160          255 TPDVIMHVLRLQRR  268 (316)
Q Consensus       255 ~~d~~~~~w~~~~~  268 (316)
                      . .| +..++..++
T Consensus       516 ~-~G-l~~~~~~~~  527 (795)
T 4a2l_A          516 E-EG-LSVFKQEGL  527 (795)
T ss_dssp             S-SC-EEEEEEETT
T ss_pred             C-Cc-eEEEeCCCC
Confidence            4 44 566766543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.14  E-value=0.002  Score=52.14  Aligned_cols=160  Identities=10%  Similarity=0.083  Sum_probs=103.5

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccccc--CCCcccEEEEEE---ccCCCeEEEec-
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI--GKNNIHITGLAY---SNTSELLISYN-  111 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~l~s~~-  111 (316)
                      -+++|++....++++.-..+.|..|+...+...          ......+.  ......+..|.|   .|++++++... 
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~----------~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF----------NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEE----------EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE----------EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            478998866345555558999999998755311          01111110  011224579999   58887776532 


Q ss_pred             -------------CCcEEEEEcC---CCCCCCCccCCccccccCCCcceee--CCc---------CCceeeeEEEecCCC
Q 021160          112 -------------DELVYLFEKN---MGLGPSPLSLSPEDLQKREEPQVYS--GHR---------NSQTVKGVNFFGPND  164 (316)
Q Consensus       112 -------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~i~~~~~~~~~~  164 (316)
                                   +..|..||+.   ++                +.+....  ...         .......++. .++|
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg----------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav-D~~G  148 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENS----------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ-DRDG  148 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTC----------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEE-CTTS
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCC----------------CEEEEecCccccccccccccccccCCceeEE-CCCC
Confidence                         5779999998   55                3333322  110         1123778988 9999


Q ss_pred             cEEEEeccC-CeEEEEeccCCeeEEEee-c-----CccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          165 EYVMSGSDC-GHLFIWKKKGGKLVRLMV-G-----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       165 ~~l~~~~~d-g~v~~wd~~~~~~~~~~~-~-----~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      +..++++.. +.|..++.... .+..+. .     .....+.|+++|+++.|+.....+.+..+|+..
T Consensus       149 naYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          149 NSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            999999988 88888887743 333221 1     122367899999999877776699999999874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.11  E-value=0.0026  Score=52.61  Aligned_cols=195  Identities=11%  Similarity=0.010  Sum_probs=114.9

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  113 (316)
                      ..+|.+..+..  +|+.+. ...|+..++.....               ..+... ......++|.+... ++.+- ..+
T Consensus        35 ~~~C~~~~~~~--~ll~~~-~~~I~~i~~~g~~~---------------~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~   95 (349)
T 3v64_C           35 RRSCKALGPEP--VLLFAN-RIDIRQVLPHRSEY---------------TLLLNN-LENAIALDFHHRRELVFWSDVTLD   95 (349)
T ss_dssp             SSCEEESSSCC--EEEEEC-BSCEEEECTTSCCE---------------EEEECS-CSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCcccccccCc--eeEeec-ccceEEEeCCCCee---------------EEeecC-CCceEEEEEeccccEEEEEeccCC
Confidence            34566666633  343333 35577778765431               111111 23478999997655 55553 688


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      .|+.+++...                .....+......  ...+++ .+. +.+.++-...+.|.+.++........+..
T Consensus        96 ~I~r~~~~g~----------------~~~~~~~~~~~~--p~glav-d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~  156 (349)
T 3v64_C           96 RILRANLNGS----------------NVEEVVSTGLES--PGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ  156 (349)
T ss_dssp             EEEEEETTSC----------------SCEEEECSSCSC--CCEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECT
T ss_pred             ceEEEecCCC----------------CceEEEeCCCCC--ccEEEE-ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC
Confidence            8999998765                222222222222  567887 654 55556666678999999875443333333


Q ss_pred             CccceEEEEEcCCCCe-EEEEeCC-CcEEEecCCCCCCCCCCC-CcccceeeeecC-CCCceeEEecCCCeEEEEEeccc
Q 021160          193 DRHVVNQLEPHPHIPM-FATCGIE-KTVKLWAPMPTDFPPLPD-NAEKIMKANKQG-REDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~-l~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .-.....++++|.+.. +.+-... +.|...++.......+.. .......++ +. .++.+.++-+..+.|..+++...
T Consensus       157 ~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla-~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          157 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT-IDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEE-EeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            3356789999996655 4454444 788888887654333321 222233444 44 46677778777888888887654


Q ss_pred             C
Q 021160          269 Q  269 (316)
Q Consensus       269 ~  269 (316)
                      .
T Consensus       236 ~  236 (349)
T 3v64_C          236 H  236 (349)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.09  E-value=0.00026  Score=62.85  Aligned_cols=108  Identities=11%  Similarity=-0.029  Sum_probs=68.3

Q ss_pred             CCCc---EEEEeccCCeEEEEeccCCeeEEEeecCc-------------cce--------------------------EE
Q 021160          162 PNDE---YVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVV--------------------------NQ  199 (316)
Q Consensus       162 ~~~~---~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-------------~~v--------------------------~~  199 (316)
                      .+|+   .++.++.+|.++++|..+|+.+.......             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4663   57788899999999999999877654211             011                          23


Q ss_pred             EEEcCCCCeEEEEe-------------------------------------CCCcEEEecCCCCCC-CCCCCCcccceee
Q 021160          200 LEPHPHIPMFATCG-------------------------------------IEKTVKLWAPMPTDF-PPLPDNAEKIMKA  241 (316)
Q Consensus       200 ~~~~p~~~~l~s~~-------------------------------------~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  241 (316)
                      ++++|+...+...+                                     .++.|..||+.+++. -+.. ........
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~  469 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGG  469 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSB
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccce
Confidence            57788776655443                                     347888999888762 2211 11111111


Q ss_pred             eecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          242 NKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       242 ~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      . ....+..++.++.|+.++.+|..+++.+
T Consensus       470 ~-~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          470 T-LYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             C-EEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             e-EEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence            1 1223456677899999999999888554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.05  E-value=0.0047  Score=55.35  Aligned_cols=196  Identities=10%  Similarity=-0.023  Sum_probs=118.4

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~  113 (316)
                      .+.+++|++.+..++.+-..++.|..+++.....          .     .+..........+++.+.+. ++++ ...+
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----------~-----~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~  102 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----------E-----HVVEFGLDYPEGMAVDWLGKNLYWADTGTN  102 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------E-----EEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----------E-----EEEeCCCCCcceEEEEeCCCEEEEEECCCC
Confidence            5779999997746666666788899888875431          1     11111123456788887654 5555 3578


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEec--cCCeEEEEeccCCeeEEEe
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|.+.+++..                 ....+. ....  ....+++ .|...+|+...  ..+.|...++.... ...+
T Consensus       103 ~I~v~~~dG~-----------------~~~~l~~~~l~--~P~~iav-dp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l  161 (628)
T 4a0p_A          103 RIEVSKLDGQ-----------------HRQVLVWKDLD--SPRALAL-DPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL  161 (628)
T ss_dssp             EEEEEETTST-----------------TCEEEECSSCC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCS-CEEE
T ss_pred             EEEEEecCCC-----------------cEEEEEeCCCC--CcccEEE-ccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE
Confidence            8999998764                 222332 2222  3788998 77555555443  35678888876443 3333


Q ss_pred             ecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          191 VGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      ...-.....+++++++..|. +-...+.|...++.+.....+.........++..  ++.++++-...+.|...+..+++
T Consensus       162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCC
Confidence            33345678999999766654 4456678999998765432222111222233322  35666777777878777755553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.03  E-value=0.004  Score=52.31  Aligned_cols=192  Identities=10%  Similarity=-0.002  Sum_probs=111.2

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcE
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELV  115 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i  115 (316)
                      .+.+..+..  +|+.+ ....|+.+++.....               ..+.. .......++|.+.+. ++++ ...+.|
T Consensus        80 ~C~~~~~~~--~l~~~-~~~~I~~i~~~~~~~---------------~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I  140 (386)
T 3v65_B           80 SCKALGPEP--VLLFA-NRIDIRQVLPHRSEY---------------TLLLN-NLENAIALDFHHRRELVFWSDVTLDRI  140 (386)
T ss_dssp             CEEECSSCC--EEEEE-CBSCEEEECTTSCCC---------------EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eECCccccc--eeEee-cCccceeeccCCCcE---------------EEEec-CCCccEEEEEecCCCeEEEEeCCCCcE
Confidence            345555532  33333 335688888775531               11111 133578999997655 5555 368889


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  194 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~  194 (316)
                      +.+++...                .....+.....  ....+++ .+. +.+.++-...+.|.+.++........+...-
T Consensus       141 ~r~~~~g~----------------~~~~~~~~~~~--~p~glav-d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l  201 (386)
T 3v65_B          141 LRANLNGS----------------NVEEVVSTGLE--SPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL  201 (386)
T ss_dssp             EEEETTSC----------------CEEEEECSSCS--CCCCEEE-ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC
T ss_pred             EEEecCCC----------------CcEEEEeCCCC--CccEEEE-EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC
Confidence            99998765                22222222222  2567887 654 5555566667889998887544333333333


Q ss_pred             cceEEEEEcCCCCeEE-EEeCC-CcEEEecCCCCCCCCCC-CCcccceeeeecC-CCCceeEEecCCCeEEEEEeccc
Q 021160          195 HVVNQLEPHPHIPMFA-TCGIE-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQG-REDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~-s~~~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .....++++|.+..|. +-... +.|...++.......+. ........++ +. .++.+.++-+..+.|..+++...
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla-vd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT-IDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE-EEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE-EeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            5678999999766544 44444 67888887765432221 1112223344 44 45667777777888888887644

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.03  E-value=0.0026  Score=58.46  Aligned_cols=202  Identities=7%  Similarity=-0.028  Sum_probs=116.5

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YND  112 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d  112 (316)
                      ..+.+++|++.+..++++-...+.|+.+++......      .     ....+..........|++.+.+. ++++ ...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------~-----~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~  492 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL  492 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------c-----ceeEEEecCCCCcceeeeeecCCcEEEEecCC
Confidence            356789999865356666667788888888743200      0     00111122233456788988775 5555 468


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-c-CCeEEEEeccCCeeEEEe
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-D-CGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~-dg~v~~wd~~~~~~~~~~  190 (316)
                      +.|.+.++...                .....+......  ...|++ .|.+.+|+... . .+.|...++........+
T Consensus       493 ~~I~v~~ldG~----------------~~~~l~~~~l~~--P~gIaV-Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          493 GTVSVADTKGV----------------KRKTLFRENGSK--PRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             TEEEEEETTSS----------------SEEEEEECTTCC--EEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             CeEEEEeCCCC----------------eEEEEEeCCCCC--cceEEE-ecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            89999998765                222222223322  788998 77655555543 2 378888888744433333


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCCCCCCCC---CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          191 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ...-.....|++.+.+..|..+ .....|...++.......+..   .....+.++.  .++.++++-...+.|...+..
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCC
Confidence            3333568899999876665444 456689999987655333211   1111122321  234566676677777777654


Q ss_pred             cc
Q 021160          267 RR  268 (316)
Q Consensus       267 ~~  268 (316)
                      ++
T Consensus       632 tG  633 (791)
T 3m0c_C          632 TG  633 (791)
T ss_dssp             TC
T ss_pred             CC
Confidence            44

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.00  E-value=0.0042  Score=57.50  Aligned_cols=201  Identities=6%  Similarity=0.041  Sum_probs=121.1

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      ...|.++...+++ . +..|+.+ .|.+|+..+++........        .....-....|.++...++|.+.+++.++
T Consensus       262 ~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~--------~~~~~l~~~~i~~i~~D~~g~lWigt~~~  330 (795)
T 4a2l_A          262 SNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNP--------VENGSLSQRSVRSIFMDSQGGMWLGTYFG  330 (795)
T ss_dssp             CSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCT--------TSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred             CCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCC--------CCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence            3569999999887 4 4445555 6889998766532110000        00001124579999999999988887777


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeC-----CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                      -|..|+....                 ....+..     ......|.++.. .++|. |..|+.++-|..|+..+++...
T Consensus       331 Gl~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~V~~i~~-d~~g~-lWiGt~~~Gl~~~~~~~~~~~~  391 (795)
T 4a2l_A          331 GLNYYHPIRN-----------------RFKNIRNIPYKNSLSDNVVSCIVE-DKDKN-LWIGTNDGGLNLYNPITQRFTS  391 (795)
T ss_dssp             CEEEECGGGG-----------------SSEEECCCTTSSSCSCSSEEEEEE-CTTSC-EEEEESSSCEEEECTTTCCEEE
T ss_pred             CeEEeCCCcc-----------------cceEEcCCCCCCCCCCCeeEEEEE-CCCCC-EEEEECCCCeEEEcCCCCcEEE
Confidence            8899987654                 1112211     001123888887 77766 5557777789999988766433


Q ss_pred             Eeec--------CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC-----CcccceeeeecCCCCceeEEec
Q 021160          189 LMVG--------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-----NAEKIMKANKQGREDHSRITLT  255 (316)
Q Consensus       189 ~~~~--------~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~  255 (316)
                      ....        ....|.+++..+++..|..|+.++-|..||..+++...+..     ....+..+. ...++.+.+...
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~-~d~~g~lwigt~  470 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAIL-PDGEGNLWLGTL  470 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEE-ECSSSCEEEEES
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEE-ECCCCCEEEEec
Confidence            2211        23568899988888845556666779999988765322221     122343443 344565555544


Q ss_pred             CCCeEEEEEecc
Q 021160          256 PDVIMHVLRLQR  267 (316)
Q Consensus       256 ~d~~~~~w~~~~  267 (316)
                       +| +..++..+
T Consensus       471 -~G-l~~~~~~~  480 (795)
T 4a2l_A          471 -SA-LVRFNPEQ  480 (795)
T ss_dssp             -SC-EEEEETTT
T ss_pred             -Cc-eeEEeCCC
Confidence             44 56676544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.94  E-value=0.00033  Score=63.48  Aligned_cols=54  Identities=9%  Similarity=0.002  Sum_probs=41.4

Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +|.|..||+.+++.+-....+. ......+...+..++.++.|+.++.||.++++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            4889999999999887776433 23333344467788888999999999999887

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.92  E-value=0.0078  Score=53.88  Aligned_cols=198  Identities=9%  Similarity=-0.033  Sum_probs=113.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~  113 (316)
                      ...+++|++.+..++.+-...+.|..+++....              ....+..........+++.+.+. ++++ ...+
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--------------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~  106 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--------------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETN  106 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--------------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCC
Confidence            577999998773555555567788888886442              00111122224578899998665 5555 3688


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEec--cCCeEEEEeccCCeeEEEe
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|.+.+++..                 ....+. ....  ....+++ .|.+.+|+...  ..+.|...++.........
T Consensus       107 ~I~v~~~dG~-----------------~~~~l~~~~l~--~P~~Iav-dp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~  166 (619)
T 3s94_A          107 RIEVSNLDGS-----------------LRKVLFWQELD--QPRAIAL-DPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  166 (619)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSSCS--CCCCEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEEEECCCC-----------------CEEEEEeCCCC--CCceEEE-ecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence            9999998765                 333333 2332  2678888 77655555443  2467777777633322223


Q ss_pred             ecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCCCCCCCC-CcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          191 VGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ...-...+.+++++++..|. +-...+.|...++.......+.. .......++. . ++.++++-...+.|...+..++
T Consensus       167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~-~-~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL-F-EDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEE-S-SSEEEEECTTTCSEEEEESSSC
T ss_pred             eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEE-e-CCEEEEecCCCCEEEEEECCCC
Confidence            22335678999999766644 44566789999987754332221 1111222221 1 2356667667777777776554


Q ss_pred             C
Q 021160          269 Q  269 (316)
Q Consensus       269 ~  269 (316)
                      +
T Consensus       245 ~  245 (619)
T 3s94_A          245 E  245 (619)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.004  Score=57.55  Aligned_cols=198  Identities=8%  Similarity=0.023  Sum_probs=116.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      ...|.++...+++  .|..|+.++.|..|+..++.....          ..  ........|.++...++|.+.+++.++
T Consensus       362 ~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~----------~~--~~~~~~~~v~~i~~d~~g~lWigt~~~  427 (781)
T 3v9f_A          362 NKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYN----------KE--NRELLSNSVLCSLKDSEGNLWFGTYLG  427 (781)
T ss_dssp             SSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTE
T ss_pred             CcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEc----------cC--CCCCCCcceEEEEECCCCCEEEEeccC
Confidence            3568999998877  355667667799999876542110          00  001224578999888888888877667


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeC-CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      -+..++..++                 ....+.. ......|.++.. .+++.+. .|+. +-+..++..+++.......
T Consensus       428 Gl~~~~~~~~-----------------~~~~~~~~~~~~~~v~~i~~-d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~  487 (781)
T 3v9f_A          428 NISYYNTRLK-----------------KFQIIELEKNELLDVRVFYE-DKNKKIW-IGTH-AGVFVIDLASKKVIHHYDT  487 (781)
T ss_dssp             EEEEECSSSC-----------------EEEECCSTTTCCCCEEEEEE-CTTSEEE-EEET-TEEEEEESSSSSCCEEECT
T ss_pred             CEEEEcCCCC-----------------cEEEeccCCCCCCeEEEEEE-CCCCCEE-EEEC-CceEEEeCCCCeEEecccC
Confidence            7888887654                 1122221 011123888876 6666644 4555 5688999887665433222


Q ss_pred             C-----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC---CC-cccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          193 D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP---DN-AEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       193 ~-----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      .     ...|.++...+++.+.+.. .++-+..|+..+++...+.   +. ...+..+. ...++.+.++.. +|.+..+
T Consensus       488 ~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWi~T~-~Glv~~~  564 (781)
T 3v9f_A          488 SNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIY-RSSKGQMWLATG-EGLVCFP  564 (781)
T ss_dssp             TTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEE-ECTTSCEEEEET-TEEEEES
T ss_pred             cccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEE-ECCCCCEEEEEC-CCceEEE
Confidence            2     3578999999888865443 3344777888765422221   11 12233333 344555555544 6664666


Q ss_pred             Eeccc
Q 021160          264 RLQRR  268 (316)
Q Consensus       264 ~~~~~  268 (316)
                      +..++
T Consensus       565 d~~~~  569 (781)
T 3v9f_A          565 SARNF  569 (781)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            65544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.013  Score=54.11  Aligned_cols=208  Identities=9%  Similarity=0.001  Sum_probs=117.5

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccc-cccCCCcccEEEEEEccCCCeEEEecC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR-HLIGKNNIHITGLAYSNTSELLISYND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~d  112 (316)
                      ...|.++...+++  .+..|+..+.|.++|..+.+......  .....+... ....-....|.++...++|.+.+++.+
T Consensus       257 ~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~--~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQ--IRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTS--EEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBS
T ss_pred             CceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeec--cccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecC
Confidence            3568999998877  45566665678899987665321100  000000000 000112457899999999998888777


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeC--------CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--------HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      +-|..++....                 ....+..        ......|.++.. .+++. |..|+.++-+..|+..++
T Consensus       333 ~Gl~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~-lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          333 GGINFISNAPP-----------------TFHTWSYSPTQMNESSLSNKVVSSVCD-DGQGK-LWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             SCEEEECSSCC-----------------SCEEEC----CCCSSCCSSSCEEEEEE-CTTSC-EEEEEBSSCEEEEETTEE
T ss_pred             CeEEEeCCCCC-----------------cceeeccCccccccCCCCCcceEEEEE-cCCCC-EEEEeCCCcEEEEECCCC
Confidence            77888887654                 1222210        001123888876 66665 556676667888998754


Q ss_pred             eeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC---CcccceeeeecCCCCceeEEecCCC
Q 021160          185 KLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       185 ~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                      +.....   ......|.++...+++.+.+ |+.++-+..++..+++...+..   ....+..+. ...++.+.+.. . +
T Consensus       394 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~-~d~~g~lwigt-~-~  469 (781)
T 3v9f_A          394 VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY-EDKNKKIWIGT-H-A  469 (781)
T ss_dssp             EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE-ECTTSEEEEEE-T-T
T ss_pred             eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE-ECCCCCEEEEE-C-C
Confidence            432111   12335788998888877654 5556678889987765332221   123343333 34455555544 3 4


Q ss_pred             eEEEEEeccc
Q 021160          259 IMHVLRLQRR  268 (316)
Q Consensus       259 ~~~~w~~~~~  268 (316)
                      -+..++..++
T Consensus       470 Gl~~~~~~~~  479 (781)
T 3v9f_A          470 GVFVIDLASK  479 (781)
T ss_dssp             EEEEEESSSS
T ss_pred             ceEEEeCCCC
Confidence            4667776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.90  E-value=3.8e-05  Score=69.83  Aligned_cols=200  Identities=8%  Similarity=-0.039  Sum_probs=108.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~  113 (316)
                      .+.+++|++.+..++++-...+.|+.+++......      .     ....+..........|++.+.+ +++++ ...+
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------~-----~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~  475 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  475 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------C-----CCCCBCCSCC--CCCEECCCSSSBCEECCTTTS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------c-----ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCC
Confidence            45688999876345555556788999988751100      0     0001101111234467777544 56666 4678


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCccee-eCCcCCceeeeEEEecCCCcEEEEecc--CCeEEEEeccCCeeEEEe
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~v~~wd~~~~~~~~~~  190 (316)
                      .|.++++...                 ....+ .....  ....+++ .|.+.+|+....  .+.|..+++........+
T Consensus       476 ~I~v~d~dg~-----------------~~~~l~~~~~~--~P~giav-Dp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~  535 (699)
T 1n7d_A          476 TVSVADTKGV-----------------KRKTLFREQGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  535 (699)
T ss_dssp             CEEEEBSSSC-----------------CEEEECCCSSC--CCCCEEC-CSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred             eEEEEecCCC-----------------ceEEEEeCCCC--CcceEEE-ccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence            8999998754                 22222 21122  2577887 776555554432  267888777633222222


Q ss_pred             ecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCCCCCCCC---CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          191 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      ...-...+.|+|+|++.. +++-+..+.|..+++.......+..   .......++.  .++.++++-...+.|..++..
T Consensus       536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEEECSTTTCEEEEETT
T ss_pred             eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEEEeCCCCeEEEEEcc
Confidence            222245678999987655 4555567789999987644222211   1111112221  123566666667777777754


Q ss_pred             cc
Q 021160          267 RR  268 (316)
Q Consensus       267 ~~  268 (316)
                      ++
T Consensus       614 ~G  615 (699)
T 1n7d_A          614 TG  615 (699)
T ss_dssp             TE
T ss_pred             CC
Confidence            44

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.89  E-value=0.012  Score=52.85  Aligned_cols=183  Identities=9%  Similarity=-0.064  Sum_probs=106.4

Q ss_pred             cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCC
Q 021160           55 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLS  132 (316)
Q Consensus        55 ~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~  132 (316)
                      ....|+..++.+...              ...+....-.....++|.+.+. ++++. .++.|+.+++...         
T Consensus        13 ~~~~I~~i~l~~~~~--------------~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------   69 (628)
T 4a0p_A           13 RRADIRRISLETNNN--------------NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------   69 (628)
T ss_dssp             ETTEEEEEESSCTTC--------------EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred             eCCcEEEEECCCCCc--------------ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------
Confidence            557899999976531              0011011234578999998765 55553 6889999998764         


Q ss_pred             ccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021160          133 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s  211 (316)
                             .....+.....  ....+++ .+. +++.++-...+.|.+.++........+...-.....++++|....|..
T Consensus        70 -------~~~~v~~~g~~--~P~GlAv-D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~  139 (628)
T 4a0p_A           70 -------ALEHVVEFGLD--YPEGMAV-DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW  139 (628)
T ss_dssp             -------SCEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred             -------CcEEEEeCCCC--CcceEEE-EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEE
Confidence                   22222222212  2667887 655 445555566789999998754322222233346789999996555443


Q ss_pred             Ee--CCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          212 CG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       212 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ..  ..+.|...++.......+.........++.-..++++.++-...+.|...++.....
T Consensus       140 tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            33  356777777776553332222222333442223466777777778888888765433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.88  E-value=0.00044  Score=62.53  Aligned_cols=157  Identities=6%  Similarity=-0.003  Sum_probs=88.4

Q ss_pred             EEEECC-CCCcEEEEEecCC-----------cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           39 AIVIDP-RNPNYFAVGGSDE-----------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        39 ~~~~~~-~~~~~l~~g~~dg-----------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      ++++.| ++ ++++.|+.+.           .+.+||+.++++...            ..+...+.....++++..++++
T Consensus       190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~~~~~~~~~~g~l  256 (656)
T 1k3i_A          190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMFCPGISMDGNGQI  256 (656)
T ss_dssp             EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCSSCEEEECTTSCE
T ss_pred             eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC------------cccCCCCCCccccccCCCCCCE
Confidence            566677 66 7888887543           588999988875321            1111222333445677889997


Q ss_pred             EEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-cC-----CeEEE
Q 021160          107 LISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DC-----GHLFI  178 (316)
Q Consensus       107 l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----g~v~~  178 (316)
                      ++.+  .+..+.+||..+..                 ...+..-.....-.+++. -+++++++.|+ .+     ..+.+
T Consensus       257 yv~GG~~~~~v~~yd~~t~~-----------------W~~~~~~~~~R~~~s~~~-~~dg~iyv~GG~~~~~~~~~~~e~  318 (656)
T 1k3i_A          257 VVTGGNDAKKTSLYDSSSDS-----------------WIPGPDMQVARGYQSSAT-MSDGRVFTIGGSWSGGVFEKNGEV  318 (656)
T ss_dssp             EEECSSSTTCEEEEEGGGTE-----------------EEECCCCSSCCSSCEEEE-CTTSCEEEECCCCCSSSCCCCEEE
T ss_pred             EEeCCCCCCceEEecCcCCc-----------------eeECCCCCccccccceEE-ecCCeEEEEeCcccCCcccccceE
Confidence            7774  35689999987651                 111111111111223444 46889999888 34     56899


Q ss_pred             EeccCCeeEEEe-----ecCccceEEEEEcCCCCeEEEEeCCC---------cEEEecCCCCC
Q 021160          179 WKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIEK---------TVKLWAPMPTD  227 (316)
Q Consensus       179 wd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~s~~~d~---------~i~iwd~~~~~  227 (316)
                      ||..+.+-...-     ...... ....+..++..++.++.++         .+..||+....
T Consensus       319 yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          319 YSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             EETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            999877643320     000000 0122335566666665554         45678877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.87  E-value=0.0013  Score=58.46  Aligned_cols=135  Identities=11%  Similarity=0.061  Sum_probs=77.5

Q ss_pred             CCC---cEEEEeccCCeEEEEeccCCeeEEEeecCc------------c-ce--------------------------EE
Q 021160          162 PND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR------------H-VV--------------------------NQ  199 (316)
Q Consensus       162 ~~~---~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~------------~-~v--------------------------~~  199 (316)
                      .+|   ..++.++.+|.++++|..+|+.+.......            + ++                          ..
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  397 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH  397 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence            467   567788999999999999999887654211            0 11                          23


Q ss_pred             EEEcCCCCeEEEEe---------------------------------------CCCcEEEecCCCCCC-CCCCCCcccce
Q 021160          200 LEPHPHIPMFATCG---------------------------------------IEKTVKLWAPMPTDF-PPLPDNAEKIM  239 (316)
Q Consensus       200 ~~~~p~~~~l~s~~---------------------------------------~d~~i~iwd~~~~~~-~~~~~~~~~~~  239 (316)
                      ++++|+..++....                                       .+|.|..||+.++++ -+.+ ...+..
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~  476 (599)
T 1w6s_A          398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVW  476 (599)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred             ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCcc
Confidence            56777655543321                                       346788888887762 1111 011111


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeeccc--ccccccCCCCeEEEEeccC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNA--ADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~  299 (316)
                      .- .....+.+++.++.|+.++.+|.++++.+ +...-+..  .....-+.+|++|+.-.+.
T Consensus       477 ~g-~~~tagg~vf~gt~dg~l~A~D~~tG~~l-W~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          477 GG-TMATAGDLVFYGTLDGYLKARDSDTGDLL-WKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             SB-CEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             Cc-ceEecCCEEEEECCCCeEEEEECCCCCEE-EEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            00 01124567777899999999999988654 33211111  1111224577788775544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.84  E-value=0.0015  Score=60.05  Aligned_cols=112  Identities=9%  Similarity=-0.008  Sum_probs=72.4

Q ss_pred             cEEEEEEc-cCCCeEEEe--cCC----cEEEEEcCCC-CCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160           94 HITGLAYS-NTSELLISY--NDE----LVYLFEKNMG-LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  165 (316)
Q Consensus        94 ~i~~~~~~-~~~~~l~s~--~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  165 (316)
                      .+...+|| |+|++|+-+  .+|    +|+++|+.++ .               .....+..     ....++| +|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~---------------~l~~~~~~-----~~~~~~W-spDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ---------------TIADKVSG-----TNGEIVW-GPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC---------------CCCCCEEE-----ECSCCEE-CSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE---------------eCCccccC-----ceeeEEE-ecCCC
Confidence            67889999 999976653  222    4999999775 2               11111111     1346778 99998


Q ss_pred             EEEEeccC-----CeEEEEeccCCee--EEEee-cCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCC
Q 021160          166 YVMSGSDC-----GHLFIWKKKGGKL--VRLMV-GDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPT  226 (316)
Q Consensus       166 ~l~~~~~d-----g~v~~wd~~~~~~--~~~~~-~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~  226 (316)
                      .|+....+     ..|+++++.+++.  ...+. ........+.|+|++++|+..+   ....|+++|+.++
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            88777654     3688888877642  22222 2223456789999999876554   2346888888765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.0017  Score=55.44  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             ceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEec-C
Q 021160           36 RLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D  112 (316)
Q Consensus        36 ~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-d  112 (316)
                      ....++++| ++ ..|.++...+.|+.+|+..+.+.          .     + .........++|+++++ ++++.. +
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~----------~-----~-~~~~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS----------T-----V-YSGLSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE----------E-----E-ECCCSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE----------E-----E-ecCCCCcceEEEeCCCCEEEEEeCCC
Confidence            457889998 34 34555444488999998866521          1     1 11234577999999998 555532 2


Q ss_pred             C----cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEEeccCCeeE
Q 021160          113 E----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       113 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                      +    .+.+++.....               .....+...   .....+++ +| ++.++++-..++.|+.++...+...
T Consensus       201 ~~~~~~v~~~~~~g~~---------------~~~~~l~~~---~~p~giav-dp~~g~lyv~d~~~~~V~~~~~~~~~~~  261 (430)
T 3tc9_A          201 NNDRPNNYILTRESGF---------------KVITELTKG---QNCNGAET-HPINGELYFNSWNAGQVFRYDFTTQETT  261 (430)
T ss_dssp             CTTSEEEEEEEGGGTS---------------CSEEEEEEC---SSCCCEEE-CTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcccceEEEEeCCCce---------------eeeeeeccC---CCceEEEE-eCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            2    34444443320               111222211   12567888 78 6777777777889999999877653


Q ss_pred             EEeec-CccceEEEEEcCCCCe-EEEEeCCCcEEEecCCC
Q 021160          188 RLMVG-DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP  225 (316)
Q Consensus       188 ~~~~~-~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~  225 (316)
                      ..... .......++|+|++++ +++-...+.|..++...
T Consensus       262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            32221 2235678999999995 55555678899887653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.81  E-value=0.0092  Score=48.64  Aligned_cols=156  Identities=6%  Similarity=-0.013  Sum_probs=95.3

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe--cC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY--ND  112 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~--~d  112 (316)
                      ....+++.+.+.+++++-...+.|.++++....               ...+..........+++.|.+. ++.+.  ..
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---------------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~  144 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEV  144 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSS
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---------------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence            355788887554666666677889999987432               1111122234567899998654 55553  25


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCccee-eCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCCeeEEEe
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      +.|...+++..                 ....+ ...-  .....+++ ++++..|+ +=+..+.|..+++........+
T Consensus       145 ~~I~r~~~dG~-----------------~~~~~~~~~l--~~Pnglav-d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          145 PKIERAGMDGS-----------------SRFIIINSEI--YWPNGLTL-DYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             CEEEEEETTSC-----------------SCEEEECSSC--SCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CEEEEEEcCCC-----------------CeEEEEECCC--CCccEEEE-eccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence            78888887653                 22223 2222  22688998 77655554 4456788999998743332222


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .+.-.....+++.. +..+.+-...+.|..++..+++
T Consensus       205 ~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          205 KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence            32334566777753 3455566667889888886554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=0.0059  Score=52.10  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             EEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcE-EEEec
Q 021160           95 ITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGS  171 (316)
Q Consensus        95 i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~  171 (316)
                      ...++++| ++.++++. .++.|..++...+                .......... ......++| +|++++ +++-.
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~----------------~~~~~~~~~~-~~~P~gia~-~pdG~~lyv~d~  289 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQ----------------ETTPLFTIQD-SGWEFHIQF-HPSGNYAYIVVV  289 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTT----------------EEEEEEECSS-SSCCEEEEE-CTTSSEEEEEET
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCC----------------cEEEEEEcCC-CCcceeEEE-cCCCCEEEEEEC
Confidence            45788999 67777774 6889999998765                2211122111 122678998 999994 45556


Q ss_pred             cCCeEEEEecc
Q 021160          172 DCGHLFIWKKK  182 (316)
Q Consensus       172 ~dg~v~~wd~~  182 (316)
                      ..+.|..++..
T Consensus       290 ~~~~I~~~~~d  300 (430)
T 3tc9_A          290 NQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEeCC
Confidence            68899998876

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.76  E-value=0.0044  Score=55.07  Aligned_cols=135  Identities=12%  Similarity=0.054  Sum_probs=78.2

Q ss_pred             CCC---cEEEEeccCCeEEEEeccCCeeEEEeecCc-------------cc-----------------------------
Q 021160          162 PND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HV-----------------------------  196 (316)
Q Consensus       162 ~~~---~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-------------~~-----------------------------  196 (316)
                      .+|   ..++.++.+|.++++|..+|+.+..+....             .+                             
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            456   378889999999999999999887654321             00                             


Q ss_pred             ---eEEEEEcCCCCeEEEEe---------------------------------CCCcEEEecCCCCCCC-CCCCCcccce
Q 021160          197 ---VNQLEPHPHIPMFATCG---------------------------------IEKTVKLWAPMPTDFP-PLPDNAEKIM  239 (316)
Q Consensus       197 ---v~~~~~~p~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~~-~~~~~~~~~~  239 (316)
                         -..++++|+...+....                                 .+|.|..||+.++++. +.+ ......
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~  489 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK-EHLPLW  489 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEec-CCCCCc
Confidence               01345666655544322                                 2578889999887721 111 111111


Q ss_pred             eeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeeccccc--ccccCCCCeEEEEeccC
Q 021160          240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAAD--FESDEEEGETYLLGFSD  299 (316)
Q Consensus       240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~  299 (316)
                      ... ....+.+++.++.|+.++.+|.++++.+-.... +....  -..-+.+|++|+.-.+.
T Consensus       490 ~g~-~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~-~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          490 AGV-LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT-GSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             SCC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ccc-eEeCCCEEEEECCCCcEEEEECCCCCEEEEecC-CCCcccCceEEEECCEEEEEEEcc
Confidence            100 112356777899999999999988855422222 11111  11123567777775543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.73  E-value=0.015  Score=48.99  Aligned_cols=185  Identities=11%  Similarity=0.019  Sum_probs=107.3

Q ss_pred             cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCC
Q 021160           55 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLS  132 (316)
Q Consensus        55 ~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~  132 (316)
                      ....|+..++......               .+ ......+..++|.+.+. ++.+ ...+.|+.+++.....       
T Consensus        90 ~~~~I~~i~l~~~~~~---------------~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-------  146 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYT---------------SL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-------  146 (400)
T ss_dssp             ETTEEEEECTTSCSCE---------------EE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------
T ss_pred             ccceeEEEccCCccee---------------Ee-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-------
Confidence            3477888888755411               11 11235678999998655 5555 3678899999865300       


Q ss_pred             ccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021160          133 PEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  211 (316)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s  211 (316)
                           .......+.....  ....+++ .+ .+.+.++-...+.|.+.++........+...-.....++++|.+..|..
T Consensus       147 -----~~~~~~~~~~~~~--~p~glav-D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          147 -----VSSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             ------CCCEEEECSSCS--CEEEEEE-ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE
T ss_pred             -----CCcceEEEeCCCC--CcccEEE-EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE
Confidence                 0011222222222  2678888 65 5555666667889999998855444344433455789999996665444


Q ss_pred             Ee-C-CCcEEEecCCCCCCCCCC-CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          212 CG-I-EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       212 ~~-~-d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      .. . .+.|...++.......+. ........++.-..++++.++-+....|...++.....
T Consensus       219 td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             EECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             EeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            33 2 368888888765433221 11122333442223566777777778888888765433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.72  E-value=0.0042  Score=53.04  Aligned_cols=113  Identities=11%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             EEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE-EEec
Q 021160           95 ITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGS  171 (316)
Q Consensus        95 i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~  171 (316)
                      ...+++.| +|.++++. .++.|+.+|..++                .....+...........+++ +|++++| ++-.
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g----------------~~~~~~~~~~~~~~~~~ia~-dpdG~~LYvad~  292 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATG----------------TLTEEEVMMDTKGSNFHIVW-HPTGDWAYIIYN  292 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTC----------------CEEEEEEECSCCSSCEEEEE-CTTSSEEEEEET
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCC----------------eEEEEEeccCCCCCcccEEE-eCCCCEEEEEeC
Confidence            45688899 67777774 6788999998755                22112211111111346888 9999844 4555


Q ss_pred             cCCeEEEEecc--CCee--EEEeecC---------------ccceEEEEE---------cCCCCeEEEEeCCCcEEEecC
Q 021160          172 DCGHLFIWKKK--GGKL--VRLMVGD---------------RHVVNQLEP---------HPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       172 ~dg~v~~wd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      ..+.|+.+++.  ++..  ...+.+.               -.....+++         .+++.++++-...+.|+.++.
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            67889998865  3321  1122211               123567888         677777777667788998885


Q ss_pred             C
Q 021160          224 M  224 (316)
Q Consensus       224 ~  224 (316)
                      .
T Consensus       373 ~  373 (433)
T 4hw6_A          373 E  373 (433)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.64  E-value=0.017  Score=46.96  Aligned_cols=181  Identities=11%  Similarity=0.015  Sum_probs=102.7

Q ss_pred             CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCcc
Q 021160           57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPE  134 (316)
Q Consensus        57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  134 (316)
                      ..|+..|+.+.+..              ..+ . .......++|.+.+. ++++. ..+.|+.+++......        
T Consensus        10 ~~I~~i~~~~~~~~--------------~~~-~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------   65 (316)
T 1ijq_A           10 HEVRKMTLDRSEYT--------------SLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------   65 (316)
T ss_dssp             SSEEEEETTSCCCE--------------EEE-C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             CeEEEEECCCcceE--------------ehh-c-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------
Confidence            56888898866421              111 1 134567899998664 55553 5789999998751000        


Q ss_pred             ccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021160          135 DLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~  213 (316)
                          ......+.....  ....+++ .+. +.+.++-...+.|.++++........+...-.....++++|.+..|..+.
T Consensus        66 ----~~~~~~~~~~~~--~p~glav-d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           66 ----SSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             ------CEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ----cccEEEEeCCCC--CcCEEEE-eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence                011112222222  2577887 654 45555556788999999875433333333335678999999666544333


Q ss_pred             -CC-CcEEEecCCCCCCCCCC-CCcccceeeeecCC-CCceeEEecCCCeEEEEEecccC
Q 021160          214 -IE-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       214 -~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                       .. +.|...++.......+. ........++ +.+ ++++.++-+..+.|..+++....
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla-~d~~~~~lY~~D~~~~~I~~~d~dg~~  197 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVNGGN  197 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCCeEEEEcCCCCCeEEEEECCCCCceEEE-EeccCCEEEEEECCCCeEEEEecCCCc
Confidence             33 67888887654422221 1112223344 443 56677777777888888876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.64  E-value=0.0021  Score=57.03  Aligned_cols=54  Identities=7%  Similarity=-0.103  Sum_probs=38.9

Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +|.|..||+.+++.+..+.... .+....+...+..++.++.|+.|+.+|.++++
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence            5789999999999887775322 22222233345666778899999999999887

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.61  E-value=0.032  Score=51.36  Aligned_cols=164  Identities=11%  Similarity=-0.010  Sum_probs=93.8

Q ss_pred             cccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEE
Q 021160           92 NIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVM  168 (316)
Q Consensus        92 ~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~  168 (316)
                      ...+..|+|.+... ++++ ...+.|+.+++.....            .......+.....  ....|++ .+.+ .+.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------------~~~~~~vi~~~l~--~P~GLAv-D~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYDTVISRDIQ--APDGLAV-DWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CEEEECSSCS--CCCEEEE-ETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------------CcceeEEEecCCC--Ccceeee-eecCCcEEE
Confidence            34577899998554 5555 3578899998865300            0011122222222  2677887 6655 4555


Q ss_pred             EeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CC-CcEEEecCCCCCCCCCC-CCcccceeeeecC
Q 021160          169 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IE-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQG  245 (316)
Q Consensus       169 ~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  245 (316)
                      +-...+.|.+.++........+...-.....|+++|....|..+. .. +.|.+.++.......+. ........++.-.
T Consensus       488 tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~  567 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL  567 (791)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred             EecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence            556788999999975443333333345678999999755544433 23 67888888765532221 1112233344223


Q ss_pred             CCCceeEEecCCCeEEEEEecccCc
Q 021160          246 REDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       246 ~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      .+++++++-.....|...++.....
T Consensus       568 ~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          568 LSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCce
Confidence            4566777767777888888765433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.55  E-value=0.0078  Score=51.94  Aligned_cols=162  Identities=15%  Similarity=0.230  Sum_probs=93.7

Q ss_pred             ceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEE-------ccCCC-e
Q 021160           36 RLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-------SNTSE-L  106 (316)
Q Consensus        36 ~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~-~  106 (316)
                      ....|+|+|. +.+++++-...+.|++.|+..+.+.          .+.  ............++|       ++++. +
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~----------~l~--~~~~~~~~~p~~ia~~~~~~~~d~~G~~l  207 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS----------SPL--NINTIPTNRIRSIAFNKKIEGYADEAEYM  207 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE----------EEE--CCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE----------EEE--ccCccccCCCcEEEEeecccccCCCCCEE
Confidence            4578999984 4256666555577999999877632          111  010112345789999       99998 5


Q ss_pred             EEEec-CC------cEEEEEcCC-CCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEE
Q 021160          107 LISYN-DE------LVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLF  177 (316)
Q Consensus       107 l~s~~-d~------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~  177 (316)
                      +++.. ++      .|.+++... +.           +......+.+....   ....++. +| ++.++++-..++.|+
T Consensus       208 yvad~~~~~~~~~~~V~~i~r~~~G~-----------~~~~~~~~~v~~~~---~p~giav-dp~~g~LYvtd~~~g~V~  272 (496)
T 3kya_A          208 IVAIDYDGKGDESPSVYIIKRNADGT-----------FDDRSDIQLIAAYK---QCNGATI-HPINGELYFNSYEKGQVF  272 (496)
T ss_dssp             EEEECCCTTGGGEEEEEEEECCTTSC-----------CSTTSCEEEEEEES---CCCCEEE-CTTTCCEEEEETTTTEEE
T ss_pred             EEEeCCCCCcccCceEEEEecCCCCc-----------eeecccceeeccCC---CceEEEE-cCCCCeEEEEECCCCEEE
Confidence            55543 31      266666433 10           00000001222111   1456777 77 556666677788999


Q ss_pred             EEecc-------CCee-----------EEE-ee-cCccceEEEEEcCCCCe-EEEEeCCCcEEEecCC
Q 021160          178 IWKKK-------GGKL-----------VRL-MV-GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  224 (316)
Q Consensus       178 ~wd~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~  224 (316)
                      .+|+.       ++..           ... +. +.......++|+|+++. +++-.....|+.++..
T Consensus       273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            99997       5553           122 21 12345678999999995 4455566788886543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.48  E-value=0.015  Score=47.51  Aligned_cols=154  Identities=12%  Similarity=0.092  Sum_probs=89.5

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEE-EeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARV-YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  111 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  111 (316)
                      +...+.++++.|++ .+++++. +|.+.. .|-. ++              .-..+.......+..+.+.+++.+++.+.
T Consensus       161 ~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~g-G~--------------tW~~~~~~~~~~~~~~~~~~~g~~~~~~~  223 (327)
T 2xbg_A          161 AIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPG-QT--------------AWEPHNRTTSRRLHNMGFTPDGRLWMIVN  223 (327)
T ss_dssp             CCCCEEEEEECTTS-CEEEEET-TSSEEEEECTT-CS--------------SCEEEECCSSSCEEEEEECTTSCEEEEET
T ss_pred             CCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCC-CC--------------ceeECCCCCCCccceeEECCCCCEEEEeC
Confidence            45578899999987 6666654 454433 3321 21              00001122345678899999998888888


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                      +|.+++.+.+.+                +....+...  .....+.++.+ .+++..++++. +|.+ ++....|+.-..
T Consensus       224 ~G~~~~s~~D~G----------------~tW~~~~~~~~~~~~~~~~v~~-~~~~~~~~~g~-~g~i-~~S~DgG~tW~~  284 (327)
T 2xbg_A          224 GGKIAFSDPDNS----------------ENWGELLSPLRRNSVGFLDLAY-RTPNEVWLAGG-AGAL-LCSQDGGQTWQQ  284 (327)
T ss_dssp             TTEEEEEETTEE----------------EEECCCBCTTSSCCSCEEEEEE-SSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred             CceEEEecCCCC----------------CeeEeccCCcccCCcceEEEEe-cCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence            888877653322                111111111  11122788888 77777666655 6666 455555655444


Q ss_pred             eec---CccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          190 MVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       190 ~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      +..   ....+.++.|.+++. ++.++.+|.|.-++-
T Consensus       285 ~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          285 DVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             CGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             cCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            432   235678888875544 556667898877664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.48  E-value=0.003  Score=57.49  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=89.6

Q ss_pred             cEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEe
Q 021160           94 HITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSG  170 (316)
Q Consensus        94 ~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~  170 (316)
                      .+..++|.+.+. ++++ ...+.|+.+++......            ......+.....  ....+++ .+ .+.++++-
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------------~~~~~~i~~~~~--~P~glav-D~~~g~LY~tD  471 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------SSYDTVISRDIQ--APDGLAV-DWIHSNIYWTD  471 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------------CCCCCBCCSCC----CCCEEC-CCSSSBCEECC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------------cceEEEEeCCCC--CcceEEE-EeeCCcEEEEe
Confidence            456788998665 4444 35788999998751000            011111211111  1456777 54 44555555


Q ss_pred             ccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CC-CcEEEecCCCCCCCCCC-CCcccceeeeecCC-
Q 021160          171 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IE-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQGR-  246 (316)
Q Consensus       171 ~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~-  246 (316)
                      ...+.|.++++........+.........++++|.+..|..+. .. +.|.+.++.......+. ........++ +.+ 
T Consensus       472 ~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla-vd~~  550 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT-LDLL  550 (699)
T ss_dssp             TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE-ECTT
T ss_pred             ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE-Eecc
Confidence            5678899999875543333332234567889999655544333 22 67888887654432221 1112222344 444 


Q ss_pred             CCceeEEecCCCeEEEEEeccc
Q 021160          247 EDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       247 ~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .++++++-+....|.++++...
T Consensus       551 ~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          551 SGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             TCCEEEEETTTTEEEEECSSSS
T ss_pred             CCEEEEEecCCCeEEEEccCCC
Confidence            5667778778888888887643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.47  E-value=0.029  Score=45.29  Aligned_cols=164  Identities=10%  Similarity=0.077  Sum_probs=87.2

Q ss_pred             cceEEEEECCCCCcEEEEEecC-C-cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSD-E-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  111 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~d-g-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  111 (316)
                      .....+++.+++ +++++.... + .|..++..++++..          +.  ..  ........++..+.+..+++. .
T Consensus        72 ~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~----------~~--~~--~~~~~~~g~~~~~~~~~~v~d~~  136 (306)
T 2p4o_A           72 GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVET----------LL--TL--PDAIFLNGITPLSDTQYLTADSY  136 (306)
T ss_dssp             SEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEE----------EE--EC--TTCSCEEEEEESSSSEEEEEETT
T ss_pred             CCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEE----------EE--eC--CCccccCcccccCCCcEEEEECC
Confidence            357899999998 665554332 2 46667776665211          00  00  011223344555555556664 5


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE-EEeccCCeEEEEeccC-Cee--E
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKG-GKL--V  187 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~~~-~~~--~  187 (316)
                      ++.|+.+|...+...      .....  .................+   ++++.+| ++-...+.|..+++.. ++.  .
T Consensus       137 ~g~i~~~d~~~~~~~------v~~~~--~~~~~~~~~~~~~~pngi---s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          137 RGAIWLIDVVQPSGS------IWLEH--PMLARSNSESVFPAANGL---KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             TTEEEEEETTTTEEE------EEEEC--GGGSCSSTTCCSCSEEEE---EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred             CCeEEEEeCCCCcEe------EEEEC--CccccccccCCCCcCCCc---CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence            888888887643000      00000  000000000110113444   4566555 5556678999999874 332  1


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      ..+.. ......++++++|+++++....+.|.+++...
T Consensus       206 ~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          206 EIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             EEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             EEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            12211 13456689999998877777778999999763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.34  E-value=0.012  Score=52.49  Aligned_cols=55  Identities=9%  Similarity=-0.060  Sum_probs=38.0

Q ss_pred             cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ..|.|.-||+.+++.+-..+... +...-.....+..++.++.|+.++.||.++++
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CcCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence            35789999999999877664221 11111122245666778899999999999987

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.30  E-value=0.024  Score=47.52  Aligned_cols=134  Identities=9%  Similarity=0.090  Sum_probs=79.5

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC-C--CCCCceecccccccCCCcccEEEEEEccCCC---eEE-
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI-S--SDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLI-  108 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~-  108 (316)
                      .|..+..+|+| .+||..+. ..|.|-.+..+.....- .  ..-..+.+...........+|..+.|+|-+.   .|+ 
T Consensus        67 ~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCC-CEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            57789999999 78888755 68999999854321110 0  0011122322222112357899999999763   444 


Q ss_pred             EecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec--cCCeEEEEe
Q 021160          109 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWK  180 (316)
Q Consensus       109 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~~wd  180 (316)
                      -..|+.|++||+..... .+.     ++++.  ...|........+.+++| ..++-.|...+  +.|.|+-..
T Consensus       145 LtsD~~Ir~yDl~~s~~-~P~-----~L~k~--~~~fg~d~~~~ev~S~~F-g~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQE-KPI-----VLNKP--NNSFGLDARVNDITDLEF-SKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EETTSCEEEEETTCTTS-CCE-----EESCC--CSEEESCSSCCCEEEEEE-CTTSSCEEEEECTTSCEEEEES
T ss_pred             EecCCEEEEEEcccCCC-CCc-----chhcc--ccccCCCcccceEEEEEE-cCCCcEEEEEecCCCCCEEEEC
Confidence            47999999999987321 111     22211  112221111134899999 78877777744  889887655

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.26  E-value=0.013  Score=52.14  Aligned_cols=54  Identities=13%  Similarity=-0.065  Sum_probs=38.6

Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +|.|.-||+.+++.+-..+... .+..-.....+..++.++.|+.++.||.++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence            6889999999999887765432 22211122235677778999999999999887

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.21  E-value=0.05  Score=42.55  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEecCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~  113 (316)
                      ...-.+++.+++ .++++.-.++.+.++++.......      .+..................++|.|.++ ++++....
T Consensus        70 ~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~------~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~  142 (255)
T 3qqz_A           70 KDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVK------ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN  142 (255)
T ss_dssp             SSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEE------EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred             CChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeee------eeeeeccccccccccCCcceEEEeCCCCEEEEEECcC
Confidence            356788888877 666665567888898886543100      0011110000122355689999999986 44444333


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceee-----CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                      ...+|.+......             ..+..+.     .......+.++++.+..+.+++.....+.+..+|.. |+.+.
T Consensus       143 p~~i~~~~g~~~~-------------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~  208 (255)
T 3qqz_A          143 PIEVYKVNGLLSS-------------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG  208 (255)
T ss_dssp             SEEEEEEESTTCS-------------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE
T ss_pred             CceEEEEcccccC-------------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE
Confidence            3444444321000             0111110     001112278889866667778888888999999977 66666


Q ss_pred             EeecCc---------cceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          189 LMVGDR---------HVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       189 ~~~~~~---------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      .+.-..         ...-.|+|.|+|++.++ ++-..++.+..
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            554221         25678999999986555 66666666653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.16  E-value=0.025  Score=45.44  Aligned_cols=104  Identities=7%  Similarity=0.001  Sum_probs=52.9

Q ss_pred             CCcEEEEeccC-----CeEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCCCCC
Q 021160          163 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  230 (316)
Q Consensus       163 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~~~~  230 (316)
                      ++.+++.|+.+     ..+..||+.+.+-...  ++........+.+  ++++++.|+.+     ..+.+||+.+.+...
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            56777777654     4588999887654332  2211111122222  56677777654     468899998776222


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCC-----CeEEEEEeccc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  268 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~~~~w~~~~~  268 (316)
                      +.....+.........++.+++.++.+     ..+.++|+.+.
T Consensus       237 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            221111111111112245566666544     34556665543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.16  E-value=0.088  Score=44.34  Aligned_cols=223  Identities=11%  Similarity=0.055  Sum_probs=131.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      .+|+|||+.+....+.+..            ...|.-..|-...  .|+..+ +..|.-|++....        .|++-|
T Consensus        86 ~~lQiFnle~K~klks~~~------------~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s--------~P~kvF  142 (494)
T 1bpo_A           86 KTLQIFNIEMKSKMKAHTM------------TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES--------QPVKMF  142 (494)
T ss_dssp             TEEEEEETTTTEEEEEEEC------------SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSC--------CCEEEE
T ss_pred             CeEEEEchHHhhhhcceec------------CCCceEEEecCCC--eEEEEc-CCeeEEecccCCC--------Cchhhe
Confidence            3678888877666555554            2356677776543  444443 3678899987532        455444


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEE-e---c----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLIS-Y---N----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                      .......  ...|.....+++.++++. |   .    .|.+.+|..+.+                 ..+.+.||...  .
T Consensus       143 dR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----------------~sQ~ieGhaa~--F  201 (494)
T 1bpo_A          143 DRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----------------VSQPIEGHAAS--F  201 (494)
T ss_dssp             ECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----------------CEEEECCSEEE--E
T ss_pred             ecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----------------ccchheeeeee--e
Confidence            3332222  356778888888884443 3   1    467889999875                 66778888743  4


Q ss_pred             eeEEEecCC---CcEEEEecc---CCeEEEEeccCC---------eeEEEee---cCccceEEEEEcCCCCeEEEEeCCC
Q 021160          155 KGVNFFGPN---DEYVMSGSD---CGHLFIWKKKGG---------KLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEK  216 (316)
Q Consensus       155 ~~~~~~~~~---~~~l~~~~~---dg~v~~wd~~~~---------~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~  216 (316)
                      ..+.. +.+   ...++.+..   .+.+++.++...         +.+..+.   .-.+-..++..++.-..+..-..-|
T Consensus       202 ~~~~~-~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G  280 (494)
T 1bpo_A          202 AQFKM-EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG  280 (494)
T ss_dssp             EEEEC-TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTS
T ss_pred             EEEec-CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCc
Confidence            44433 111   123333333   378889887432         1111111   1234566788888877887888899


Q ss_pred             cEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          217 TVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       217 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .|.+||+.++. +..-+-..+.+...+ ...+..-++.....|.+.-..+.+.+..
T Consensus       281 ~i~lyDleTgt~i~~nrIs~~~iF~t~-~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          281 YIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEE-EETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             eEEEEecccceeeeeecccCCceEEec-ccCCCCcEEEEccCceEEEEEEccccch
Confidence            99999999987 222111223332222 2333445666667777777766665444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.09  E-value=0.023  Score=43.08  Aligned_cols=153  Identities=9%  Similarity=0.002  Sum_probs=83.0

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc-cccccC-CCcccEEEEEEccCCCeEEEecCC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC-PRHLIG-KNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      .+..++|+|++ .+.++  .+|.+.-.+..+.+..         ..+. ...+-. +-. ...++.|.|+|.+.++ .||
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~---------~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG  107 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDND---------NWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKD  107 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC---------CHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETT
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcc---------cccccccEecccccc-cceEEEECCCCCEEEe-CCC
Confidence            67799999988 66666  6787666665443210         0000 000000 111 1478899999998888 779


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe------eE
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK------LV  187 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~------~~  187 (316)
                      .|+-++..+...           .+..-....-+....+.+..+.+ .|+|.+.+..  ++.++-....++.      ..
T Consensus       108 ~iyr~~pP~~~~-----------~~Wl~~a~~vg~~gw~~~~~lff-~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~  173 (236)
T 1tl2_A          108 KLYKASPPQSDT-----------DNWIARATEVGSGGWSGFKFLFF-HPNGYLYAVH--GQQFYKALPPVSNQDNWLARA  173 (236)
T ss_dssp             EEEEESCCCSTT-----------CCHHHHSEEEECSSGGGEEEEEE-CTTSCEEEEE--TTEEEEECCCSSTTCCHHHHC
T ss_pred             EEEEeCCCcCCC-----------CceeccccEeccCCCCceEEEEE-CCCceEEEEe--CCcEEecCCCCCCCccccccc
Confidence            988776532200           00000011112222234788888 9999877776  7776544333211      11


Q ss_pred             EEee-cCccceEEEEEcCCCCeEEEEeCCCcE
Q 021160          188 RLMV-GDRHVVNQLEPHPHIPMFATCGIEKTV  218 (316)
Q Consensus       188 ~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i  218 (316)
                      ..+- ..-.....+.|.|++.+++..  ++.+
T Consensus       174 ~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          174 TKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             ceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            1221 222345557799998876655  6643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.08  E-value=0.09  Score=43.03  Aligned_cols=118  Identities=5%  Similarity=0.101  Sum_probs=73.6

Q ss_pred             cEEEEEE--ccC-CC--eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE
Q 021160           94 HITGLAY--SNT-SE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  168 (316)
Q Consensus        94 ~i~~~~~--~~~-~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  168 (316)
                      .+..+++  +|. ++  .+++..++.+..|++.....         ...+.+.++.|.... .  +..+.. .+....|+
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~---------g~~~~~lVR~f~lgs-q--~Egcvv-Dd~~g~Ly  195 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN---------GYISGKKVRAFKMNS-Q--TEGMAA-DDEYGRLY  195 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT---------SCEEEEEEEEEECSS-C--EEEEEE-ETTTTEEE
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC---------CcccceEEEEecCCC-C--cceEEE-cCCCCeEE
Confidence            3445666  664 44  34445789999998843100         001114556665443 2  677777 78888999


Q ss_pred             EeccCCeEEEEecc-----CCeeEEEee-cC-ccceEEEEE--cCCCC-eEEEEe-CCCcEEEecCC
Q 021160          169 SGSDCGHLFIWKKK-----GGKLVRLMV-GD-RHVVNQLEP--HPHIP-MFATCG-IEKTVKLWAPM  224 (316)
Q Consensus       169 ~~~~dg~v~~wd~~-----~~~~~~~~~-~~-~~~v~~~~~--~p~~~-~l~s~~-~d~~i~iwd~~  224 (316)
                      .+-++..|+.++.+     +++.+..+. ++ ...+..|++  .++++ +|+.++ .+.++.+||.+
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99998888888855     345665553 22 236777877  45555 555444 67799999986

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.07  E-value=0.089  Score=42.91  Aligned_cols=189  Identities=8%  Similarity=-0.052  Sum_probs=99.0

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      .+.+..+.+.+++ ..++++ .++.|.. ..+.++              .-..+.......+..+++.+++.+++.+.++
T Consensus       121 ~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~--------------tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          121 PGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGK--------------NWQALVQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             SSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTS--------------SEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCC--------------CCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence            3457788877666 555555 4554422 122232              1111112334568899999998888887777


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      .++.-+-..+                .....+. ...  ..+..+.+ .+++..++. +.+|.+++.+...++.-..+..
T Consensus       184 ~~~~S~d~gG----------------~tW~~~~~~~~--~~~~~~~~-~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          184 SFYSTWEPGQ----------------TAWEPHNRTTS--RRLHNMGF-TPDGRLWMI-VNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             SEEEEECTTC----------------SSCEEEECCSS--SCEEEEEE-CTTSCEEEE-ETTTEEEEEETTEEEEECCCBC
T ss_pred             cEEEEeCCCC----------------CceeECCCCCC--CccceeEE-CCCCCEEEE-eCCceEEEecCCCCCeeEeccC
Confidence            6655432112                1222222 222  23788888 788876544 4578877764332443222221


Q ss_pred             ----CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC---CCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          193 ----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP---DNAEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       193 ----~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                          +...+..+++.|++..++.+. ++.|. +....++ ...+.   .....++.+. +.. +..++.++.+|.+.-+
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~-~~~-~~~~~~~G~~G~i~~~  318 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKIL-FFS-PDQGFILGQKGILLRY  318 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEE-EEE-TTEEEEECSTTEEEEE
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEE-EEC-CCceEEEcCCceEEEE
Confidence                223578899998877666654 67663 3444443 22221   1122333333 222 3346666677755544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.06  E-value=0.12  Score=46.30  Aligned_cols=157  Identities=6%  Similarity=-0.022  Sum_probs=91.4

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEe--c
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY--N  111 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~--~  111 (316)
                      .....+++++.+.+++++-...+.|.+.++.....               ..+....-.....|++.|.+ .++++-  .
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~---------------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~  148 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---------------KVLFWQELDQPRAIALDPSSGFMYWTDWGE  148 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSCCCCEEEETTTTEEEEEECSS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE---------------EEEEeCCCCCCceEEEecCCCeEEEeccCC
Confidence            35788999986646777767789999999875431               11111222345688998875 455663  2


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEE-eccCCeEEEEeccCCeeEEE
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~~wd~~~~~~~~~  189 (316)
                      ...|...+++..                 ....+. ...  .....+++ ++++..|+. -...+.|..+++........
T Consensus       149 ~~~I~r~~~dG~-----------------~~~~l~~~~~--~~P~Glal-d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~  208 (619)
T 3s94_A          149 VPKIERAGMDGS-----------------SRFIIINSEI--YWPNGLTL-DYEEQKLYWADAKLNFIHKSNLDGTNRQAV  208 (619)
T ss_dssp             SCEEEEEETTSC-----------------SCEEEECSSC--SSEEEEEE-ETTTTEEEEEETTTCCEEEESSSCCEEC--
T ss_pred             CCEEEEEECCCC-----------------ceEEEEeCCC--CCCcEEEE-EccCCEEEEEeCCCCeEEEecCCCCccEEE
Confidence            467777777654                 222232 222  23788998 776555544 45577899998875443322


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ..+.-.....+++..+ ..+.+-...+.|...|..+++
T Consensus       209 ~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          209 VKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             -------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             EeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            2212223345667655 445555566778888876553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.99  E-value=0.081  Score=43.61  Aligned_cols=164  Identities=9%  Similarity=0.062  Sum_probs=91.0

Q ss_pred             ceEEEEECCCCCcEEEEE------------ecCCcEEEEeCcCCcccCCCCCCCCceecccccc-cCCCcccEEEEEEcc
Q 021160           36 RLNAIVIDPRNPNYFAVG------------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN  102 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g------------~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~  102 (316)
                      ..-.+.+.|+| ..++++            ..+|.|.++|+.+...        ....+..... .....-....+.+.+
T Consensus        51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~--------~~~~l~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP--------AVSELEIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSC--------CEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred             CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCC--------ceEEEEccCCCCCcCceeeeeeEEEE
Confidence            34567788877 444443            1689999999874320        0111111110 011223455666655


Q ss_pred             --CCC--eEEEe-c--CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec----
Q 021160          103 --TSE--LLISY-N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS----  171 (316)
Q Consensus       103 --~~~--~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----  171 (316)
                        +++  +++.. .  +.+|.+|+++....            ....+..+.+.. ....+++.+ .++|.+.++..    
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~------------~~~~~~~~~g~~-~~~pND~~v-~~~G~fyvt~~~~ft  187 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEK------------SLLHLKTIRHKL-LPSVNDIVA-VGPEHFYATNDHYFI  187 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTT------------EEEEEEEECCTT-CSSEEEEEE-EETTEEEEEESCSCS
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCC------------EEEEEeccccCC-CCCCceEEE-eCCCCEEecCCcEeC
Confidence              454  44442 2  56788888765310            001223343322 134788888 78888777654    


Q ss_pred             -------------cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCC
Q 021160          172 -------------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP  225 (316)
Q Consensus       172 -------------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~  225 (316)
                                   ..|.|+.++.  ++. ..+...-...+.++|+|+++.|..+ +..+.|..|++..
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                         1345666665  332 2222223457889999999885544 5678899999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.95  E-value=0.16  Score=43.82  Aligned_cols=123  Identities=11%  Similarity=0.087  Sum_probs=64.8

Q ss_pred             EEEEEEccCC-CeEEEe-cCCcEEEEEcC-------CCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCC
Q 021160           95 ITGLAYSNTS-ELLISY-NDELVYLFEKN-------MGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPND  164 (316)
Q Consensus        95 i~~~~~~~~~-~~l~s~-~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~  164 (316)
                      ...++++|++ .++++. .++.|+.+|+.       ++....+..  ...  . ... ..+.. ........++| +|++
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~--~~~--~-g~~~~l~~~-~~~~~p~~ia~-~p~G  321 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV--KNN--P-NTFKQLFTI-ADPSWEFQIFI-HPTG  321 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG--GGC--T-TTEEEEEEC-SSSSCCEEEEE-CTTS
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc--ccc--c-cccceeEec-CCCCCceEEEE-cCCC
Confidence            4577889954 566664 68889999997       441000000  000  0 000 11211 11122578999 9999


Q ss_pred             cEE-EEeccCCeEEEEecc--CCee--EEEeecC---c------------cceE-EEEEc-------CCCCeEEEEeCCC
Q 021160          165 EYV-MSGSDCGHLFIWKKK--GGKL--VRLMVGD---R------------HVVN-QLEPH-------PHIPMFATCGIEK  216 (316)
Q Consensus       165 ~~l-~~~~~dg~v~~wd~~--~~~~--~~~~~~~---~------------~~v~-~~~~~-------p~~~~l~s~~~d~  216 (316)
                      ++| ++-+....|+.++..  .+..  ...+.+.   .            .... .++..       +++.++++-....
T Consensus       322 ~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~  401 (496)
T 3kya_A          322 KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF  401 (496)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGT
T ss_pred             CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCC
Confidence            954 444667889986654  3332  1222221   0            1233 34444       4556666666677


Q ss_pred             cEEEecCC
Q 021160          217 TVKLWAPM  224 (316)
Q Consensus       217 ~i~iwd~~  224 (316)
                      .|+.++..
T Consensus       402 rIr~i~~~  409 (496)
T 3kya_A          402 CVRKVTPE  409 (496)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            88888843

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.88  E-value=0.1  Score=41.72  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=54.4

Q ss_pred             CCcEEEEeccC-----CeEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCCCCC
Q 021160          163 NDEYVMSGSDC-----GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  230 (316)
Q Consensus       163 ~~~~l~~~~~d-----g~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~~~~  230 (316)
                      ++.+++.|+.+     ..+.+||+.+.+-.  ..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+...
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56777777643     36889998876533  222221111122222  56677777654     468899988776222


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCC-----CeEEEEEeccc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  268 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~~~~w~~~~~  268 (316)
                      +.....+.........++.+++.++.+     ..+.++|+.+.
T Consensus       190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            211111111111112245666666653     45777777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.88  E-value=0.058  Score=43.40  Aligned_cols=185  Identities=12%  Similarity=0.108  Sum_probs=89.7

Q ss_pred             cEEEEEecC----CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC------CcEE
Q 021160           48 NYFAVGGSD----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND------ELVY  116 (316)
Q Consensus        48 ~~l~~g~~d----g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d------~~i~  116 (316)
                      .+++.|+.+    ..+.+||+.+.++.....            +... ......+.+  ++++++. +.+      ..+.
T Consensus        57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~------------~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  121 (306)
T 3ii7_A           57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG------------PPTP-RDSLAACAA--EGKIYTSGGSEVGNSALYLFE  121 (306)
T ss_dssp             EEEEECCBSSSBCCEEEEEETTTTEEEEEEC------------CSSC-CBSCEEEEE--TTEEEEECCBBTTBSCCCCEE
T ss_pred             EEEEEeCCCCCCcceEEEEeCCCCeEEECCC------------CCcc-ccceeEEEE--CCEEEEECCCCCCCcEeeeEE
Confidence            677888755    668889998876532210            1011 111112222  5565555 433      3588


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---------CCeEEEEeccCCeeE
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLV  187 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~~wd~~~~~~~  187 (316)
                      +||..+..                 ...+........-.+++.  .++.+++.|+.         -..+.+||+.+.+-.
T Consensus       122 ~~d~~~~~-----------------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          122 CYDTRTES-----------------WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             EEETTTTE-----------------EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             EEeCCCCc-----------------eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence            88887651                 111111111111112222  25666677654         345889998877533


Q ss_pred             EE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC---
Q 021160          188 RL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---  257 (316)
Q Consensus       188 ~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d---  257 (316)
                      ..  +......- +++.. ++++++.|+.+     ..+.+||+.+.+...+.....+.........++.+++.++.+   
T Consensus       183 ~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~  260 (306)
T 3ii7_A          183 ELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVG  260 (306)
T ss_dssp             EECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSS
T ss_pred             ECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCe
Confidence            22  21111111 22222 56677776643     368899998876222221111111111111255677776643   


Q ss_pred             --CeEEEEEeccc
Q 021160          258 --VIMHVLRLQRR  268 (316)
Q Consensus       258 --~~~~~w~~~~~  268 (316)
                        ..+.++|+.+.
T Consensus       261 ~~~~~~~yd~~~~  273 (306)
T 3ii7_A          261 RLGHILEYNTETD  273 (306)
T ss_dssp             BCCEEEEEETTTT
T ss_pred             eeeeEEEEcCCCC
Confidence              45667776554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.75  E-value=0.12  Score=43.32  Aligned_cols=108  Identities=8%  Similarity=0.060  Sum_probs=74.3

Q ss_pred             EccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc--CCceeeeEEEecCCCcEEEEeccCCeEE
Q 021160          100 YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLF  177 (316)
Q Consensus       100 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~v~  177 (316)
                      ...+|.-++...++.|+.-++...                ...+.+....  ....+..+.. +|+|.+||..+ +..|.
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~----------------~~Yk~L~~~~~i~f~~i~qlvl-SpsG~lLAl~g-~~~V~   89 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTD----------------SLYHSLNFSRHLVLDDTFHVIS-STSGDLLCLFN-DNEIF   89 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTC----------------SSCEEEECTTTCCCCTTCEEEE-CTTSSEEEEEC-SSEEE
T ss_pred             EEcCCCEEEEEECCEEEEEECCCC----------------CcceEEecCcccccCceeEEEE-CCCCCEEEEec-CCeEE
Confidence            345667777777888998888754                2334444331  1122777887 99999999886 45788


Q ss_pred             EEeccCCe------------eEEEeec------CccceEEEEEcCCC---CeEEEEeCCCcEEEecCCC
Q 021160          178 IWKKKGGK------------LVRLMVG------DRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       178 ~wd~~~~~------------~~~~~~~------~~~~v~~~~~~p~~---~~l~s~~~d~~i~iwd~~~  225 (316)
                      +..+..+.            ..+.+.-      ...+|..+.|||-+   ..|++-..|+.||+||+..
T Consensus        90 Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           90 VMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             EEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            88876321            1122321      24679999999954   5788889999999999986

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.73  E-value=0.15  Score=49.56  Aligned_cols=227  Identities=11%  Similarity=0.049  Sum_probs=125.1

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      .+|+|||+.+....+.+..            +.+|.-..|-...  .|+..+ +..|..|++....        .|++-|
T Consensus        86 ~~lQiFnl~~k~klks~~~------------~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s--------~P~k~f  142 (1630)
T 1xi4_A           86 KTLQIFNIEMKSKMKAHTM------------TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES--------QPVKMF  142 (1630)
T ss_pred             CeEEEeehHHhhhhccccc------------CCCceEEEecCCC--eeEEEc-CCeEEEeccCCCC--------ccHHHH
Confidence            3567777766655555444            3467778886544  344333 3579999996432        333333


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEE-e-c------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLIS-Y-N------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  154 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (316)
                      .......  ...|.....+++.++++. | +      .|.+.+|..+.+                 ..+.+.||...  .
T Consensus       143 dR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----------------~sQ~iegha~~--F  201 (1630)
T 1xi4_A          143 DRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----------------VSQPIEGHAAS--F  201 (1630)
T ss_pred             hcchhcc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----------------cchhhhHhHhh--h
Confidence            2222111  356777788888884443 3 1      577889998875                 45556666532  2


Q ss_pred             eeEEEe--cCCCcEEEEecc---CCeEEEEeccCC---ee------EEEe-e--cCccceEEEEEcCCCCeEEEEeCCCc
Q 021160          155 KGVNFF--GPNDEYVMSGSD---CGHLFIWKKKGG---KL------VRLM-V--GDRHVVNQLEPHPHIPMFATCGIEKT  217 (316)
Q Consensus       155 ~~~~~~--~~~~~~l~~~~~---dg~v~~wd~~~~---~~------~~~~-~--~~~~~v~~~~~~p~~~~l~s~~~d~~  217 (316)
                      ..+...  ++....++.+..   .+.+++-++...   ..      +..+ +  .-.+...++..++.-..+..-+.-|.
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~  281 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence            222220  111122222211   367888887432   11      1111 1  11234456777777777777778899


Q ss_pred             EEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160          218 VKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  274 (316)
Q Consensus       218 i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~  274 (316)
                      |.+||+.++. +..-+-....+...+ ......-++.....|.|.-..+.+.+...|.
T Consensus       282 ~~~~d~~t~~~i~~~ris~~~iF~~~-~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi  338 (1630)
T 1xi4_A          282 IHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNRKGQVLSVCVEEENIIPYI  338 (1630)
T ss_pred             EEEEecccchhhhhccccCCceEEec-cCCCCCceEEEcCCceEEEEEEccchhhhhH
Confidence            9999999987 322222333343333 2333445666667777777776665554443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.68  E-value=0.075  Score=42.63  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=36.7

Q ss_pred             CCcEEEEecc-------CCeEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160          163 NDEYVMSGSD-------CGHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~-------dg~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~  227 (316)
                      ++.+++.|+.       -..+..||+.+.+-...  ++........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            5667777654       23588999887653322  2211112222222  56677777654     368899998775

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.67  E-value=0.12  Score=41.70  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=37.4

Q ss_pred             CCcEEEEeccC-----CeEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160          163 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~  227 (316)
                      ++.+++.|+.+     ..+..||+.+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            56777777654     4588999887653221  2211112222223  56677777654     468999998876

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.65  E-value=0.056  Score=43.83  Aligned_cols=156  Identities=8%  Similarity=0.053  Sum_probs=97.5

Q ss_pred             EEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcc-eeeC----CcCCceeeeEEEe--cCCCc
Q 021160           95 ITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSG----HRNSQTVKGVNFF--GPNDE  165 (316)
Q Consensus        95 i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~i~~~~~~--~~~~~  165 (316)
                      -.+++|.+. +.++++. ..++|..||...+                .... .+.+    ......+..+.+.  .|+++
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~----------------~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr   78 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ----------------SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR   78 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTC----------------CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCC----------------eEEEEecCCccccCCCcceeeEEEEeccCCCCc
Confidence            347889875 4566776 6999999998754                1111 1221    1111125778872  36777


Q ss_pred             EEEEec-------------cCCeEEEEecc---CCeeEEEee--cC-----------ccceEEEEEcCCCCeEEEEeCC-
Q 021160          166 YVMSGS-------------DCGHLFIWKKK---GGKLVRLMV--GD-----------RHVVNQLEPHPHIPMFATCGIE-  215 (316)
Q Consensus       166 ~l~~~~-------------~dg~v~~wd~~---~~~~~~~~~--~~-----------~~~v~~~~~~p~~~~l~s~~~d-  215 (316)
                      ++++..             .+..|..||+.   +++.+....  ..           ......++..++|+..++++.- 
T Consensus        79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred             EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence            777543             26789999999   787765543  11           1247899999999999988877 


Q ss_pred             CcEEEecCCCCCCCCC----C-CCcc-cceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          216 KTVKLWAPMPTDFPPL----P-DNAE-KIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       216 ~~i~iwd~~~~~~~~~----~-~~~~-~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +.|...+........+    + .... ....++ +.+++..|+.....+.+..+|+.+
T Consensus       159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv-~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGIT-FDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEE-EETTTTEEEEESSSSSEEEEECSS
T ss_pred             CeEEEEeCCCCEEeeeeecCCCcccccCcceEE-EeCCCCEEEEEcCCCeEEEEcCCC
Confidence            7777777765532111    0 0111 111233 667777776666699999998774

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.58  E-value=0.11  Score=49.98  Aligned_cols=176  Identities=10%  Similarity=0.093  Sum_probs=103.0

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEE---ECCCCCcEEEEEe----------cCCcEEEEeCcCCcc
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV---IDPRNPNYFAVGG----------SDEYARVYDIRKCHW   69 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~---~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~   69 (316)
                      +.|++.|..+.+....+.....+          .+.+++   |..+...++++|+          ..|.|.+|++..+++
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE----------~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL  876 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNE----------YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL  876 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTE----------EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCc----------ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE
Confidence            56788887776654444444332          445544   4433336888886          357899999874432


Q ss_pred             cCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCC
Q 021160           70 YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGH  148 (316)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (316)
                                +.+...    ...+++++++-- +| +|+++...+|++|++...                +.++. ....
T Consensus       877 ----------~lv~~~----~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~----------------~~L~~~~~~~  924 (1158)
T 3ei3_A          877 ----------QTVAEK----EVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTE----------------KELRTECNHY  924 (1158)
T ss_dssp             ----------EEEEEE----EESSCEEEEEEE-TT-EEEEEETTEEEEEEECTT----------------SCEEEEEEEC
T ss_pred             ----------EEEEEE----EcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCC----------------ceEEEEeecc
Confidence                      111111    225678887643 34 566666789999999764                22221 1111


Q ss_pred             cCCceeeeEEEecCCCcEEEEeccCCeEEEEec--cCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK--KGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~--~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      .. ..+..+.   ..+++++.|..-..|.++..  ..+++...-.. +...++++.+-.+ ..++.+..+|.+.+.....
T Consensus       925 ~~-i~~~~l~---~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          925 NN-IMALYLK---TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CC-SCEEEEE---EETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             cc-EEEEEEe---ccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            11 0022333   24788999988777776554  44554433332 4457888887644 4677788899999887554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.47  E-value=0.15  Score=40.84  Aligned_cols=185  Identities=9%  Similarity=0.021  Sum_probs=88.8

Q ss_pred             cEEEEEec--CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC----CcEEEEEc
Q 021160           48 NYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND----ELVYLFEK  120 (316)
Q Consensus        48 ~~l~~g~~--dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d----~~i~iwd~  120 (316)
                      .+++.|+.  ...+.+||..+.++......+            .. ......+.  .++.+++. |.+    ..+.+||.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p------------~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~   77 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPF------------EK-RRDAACVF--WDNVVYILGGSQLFPIKRMDCYNV   77 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCS------------CC-CBSCEEEE--ETTEEEEECCBSSSBCCEEEEEET
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCC------------cc-cceeEEEE--ECCEEEEEeCCCCCCcceEEEEeC
Confidence            56666764  367889999888754321110            10 11111222  24555555 433    56888888


Q ss_pred             CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC------CeEEEEeccCCeeEEE--eec
Q 021160          121 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHLFIWKKKGGKLVRL--MVG  192 (316)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~~wd~~~~~~~~~--~~~  192 (316)
                      .+.                 ....+........-.+++.  .++.+++.|+.+      ..+.+||+.+.+-...  +..
T Consensus        78 ~~~-----------------~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  138 (306)
T 3ii7_A           78 VKD-----------------SWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT  138 (306)
T ss_dssp             TTT-----------------EEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCC-----------------eEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC
Confidence            765                 1112221111111112222  256777777754      4588999887754322  211


Q ss_pred             CccceEEEEEcCCCCeEEEEeC---------CCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC-----C
Q 021160          193 DRHVVNQLEPHPHIPMFATCGI---------EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-----V  258 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~  258 (316)
                      ....-..+.+  ++++++.|+.         -..+.+||+.+.+...+.....+.........++.+++.++.+     .
T Consensus       139 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~  216 (306)
T 3ii7_A          139 QRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLD  216 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBC
T ss_pred             CcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCc
Confidence            1111122222  5666666653         3458899998875222221111111111111245566665543     3


Q ss_pred             eEEEEEeccc
Q 021160          259 IMHVLRLQRR  268 (316)
Q Consensus       259 ~~~~w~~~~~  268 (316)
                      .+.++|+.+.
T Consensus       217 ~~~~yd~~~~  226 (306)
T 3ii7_A          217 NVEYYDIKLN  226 (306)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEeeCCCC
Confidence            4667776554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.44  E-value=0.13  Score=41.53  Aligned_cols=104  Identities=6%  Similarity=-0.029  Sum_probs=52.4

Q ss_pred             CCcEEEEeccC--------CeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeC-C-----CcEEEecCCCC
Q 021160          163 NDEYVMSGSDC--------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGI-E-----KTVKLWAPMPT  226 (316)
Q Consensus       163 ~~~~l~~~~~d--------g~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~-d-----~~i~iwd~~~~  226 (316)
                      ++.+++.|+.+        ..+.+||+.+.+-..  .++.....-. ++. .++++++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT-VLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccccee-EEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56677777642        458899988765322  2221111112 222 35667777765 2     36889998877


Q ss_pred             CCCCCCCCcccceeeeecCCCCceeEEecCCC-----eEEEEEeccc
Q 021160          227 DFPPLPDNAEKIMKANKQGREDHSRITLTPDV-----IMHVLRLQRR  268 (316)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-----~~~~w~~~~~  268 (316)
                      +...+.....+.........++.+++.++.++     .+.++|+.+.
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            62222211111111111122556666665543     4666666544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.24  E-value=0.31  Score=39.12  Aligned_cols=104  Identities=9%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             CCcEEEEeccC-----CeEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCCCCC
Q 021160          163 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  230 (316)
Q Consensus       163 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~~~~  230 (316)
                      ++.+++.|+.+     ..+.+||+.+.+-...  ++.....-..+.+  ++++++.|+.+     ..+.+||+.+.+...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56777777643     3588899887653321  2211112122222  56677777654     458899988776222


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCC-----CeEEEEEeccc
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  268 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~~~~w~~~~~  268 (316)
                      +.....+.........++.+++.++.+     ..+.++|+.+.
T Consensus       199 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            221111111111111255666666554     45777776654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.09  E-value=0.47  Score=39.03  Aligned_cols=151  Identities=12%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC----CCeEEEe-
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISY-  110 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~-  110 (316)
                      .-..++|.|++ ++++ +..+|.|++++  .++.       ..+....   +..........++++|+    +.++++. 
T Consensus        32 ~P~~ia~~pdG-~l~V-~e~~g~I~~i~--~g~~-------~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           32 VPWALAFLPDG-GMLI-AERPGRIRLFR--EGRL-------STYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CEEEEEECTTS-CEEE-EETTTEEEEEE--TTEE-------EEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCC-eEEE-EeCCCeEEEEE--CCCc-------cEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            45799999999 6544 45669999988  3431       0111111   11122346789999998    4455553 


Q ss_pred             cC-----CcEEEEEcCCCCCCCCccCCccccccCC-CcceeeC-CcCCceeeeEEEecCCCcEEEEecc-----------
Q 021160          111 ND-----ELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSD-----------  172 (316)
Q Consensus       111 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~-----------  172 (316)
                      ..     ..|..++.....           +...+ ....+.. .........++| .|+|.+.++-+.           
T Consensus        98 ~~~~~~~~~v~r~~~~~~~-----------~~~~~~l~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~G~~~~~~~~~d~~  165 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGER-----------GVLDRVVLDGIPARPHGLHSGGRIAF-GPDGMLYVTTGEVYERELAQDLA  165 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSC-----------EEEEEEEEEEECCCTTCCCCCCCEEE-CTTSCEEEECCCTTCGGGGGCTT
T ss_pred             cCCCCCccEEEEEEeCCCC-----------cCceEEEEEeCCCCCCCCcCCceEEE-CCCCCEEEEECCCCCCccccCCC
Confidence            22     678888876320           00001 1111221 000012467888 999976666432           


Q ss_pred             --CCeEEEEeccCC-------------eeEEEeecCccceEEEEEcC-CCCeEEEEe
Q 021160          173 --CGHLFIWKKKGG-------------KLVRLMVGDRHVVNQLEPHP-HIPMFATCG  213 (316)
Q Consensus       173 --dg~v~~wd~~~~-------------~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~  213 (316)
                        .|.|.-++....             .......++. ....++|+| ++.++++-.
T Consensus       166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred             CCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence              256666665420             1111112333 356799999 666655443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.09  E-value=0.46  Score=40.72  Aligned_cols=117  Identities=11%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC----CCeEEEe-
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISY-  110 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~-  110 (316)
                      ...+|+|.|+| +++++-...+.|++++..+++..       .+..+...............|+|+|+    +.+.++. 
T Consensus        28 ~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~-------~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           28 KPHALLWGPDN-QIWLTERATGKILRVNPESGSVK-------TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-------EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe-------EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            45799999999 66665443346888876544311       11111100000112456789999995    4455553 


Q ss_pred             c------------CCcEEEEEcCCCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160          111 N------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus       111 ~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      .            ...|..+++.....         .+...+.+ ..+.. ........++| .|+|.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~---------~~~~~~~i~~~~p~-~~~H~~~~l~f-~pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTD---------TLEKPVDLLAGLPS-SKDHQSGRLVI-GPDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTT---------EEEEEEEEEEEECC-CSSCCEEEEEE-CTTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCC---------CcCCcEEEEEcCCC-CCCCCCCeEeE-CCCCeEEEEEC
Confidence            2            13466666543200         00000111 11111 11122688998 99998777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.06  E-value=0.42  Score=38.16  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             CCcEEEEeccCC-----eEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-------CcEEEecCCCCCC
Q 021160          163 NDEYVMSGSDCG-----HLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-------KTVKLWAPMPTDF  228 (316)
Q Consensus       163 ~~~~l~~~~~dg-----~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-------~~i~iwd~~~~~~  228 (316)
                      ++.+++.|+.++     .+.+||+.+.+-...  +.........+.+  ++++++.|+.+       ..+.+||+.+.+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            567777776543     578888887654322  2211111122222  56666666542       3588899887652


Q ss_pred             CCCCCCcccceeeeecCCCCceeEEecCC-----CeEEEEEeccc
Q 021160          229 PPLPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  268 (316)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~~~~w~~~~~  268 (316)
                      ..+.....+.........++.+++.++.+     ..+.++|+.+.
T Consensus       186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            22111111111111112245666666554     35777776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.05  E-value=0.33  Score=36.87  Aligned_cols=112  Identities=13%  Similarity=-0.014  Sum_probs=64.7

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160           94 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  173 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  173 (316)
                      .+..++|+|+|.+.+. .++.++-.+..+...      ..+     .-..+.-+.........+.| .++|.+.++  .|
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~------~~W-----~~s~t~IG~~Gw~~F~a~~f-D~~G~LYav--~d  106 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN------DNW-----MGRAKKIGNGGWNQFQFLFF-DPNGYLYAV--SK  106 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTT------CCH-----HHHCEEEECSCGGGCSEEEE-CTTSCEEEE--ET
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCc------ccc-----cccccEecccccccceEEEE-CCCCCEEEe--CC
Confidence            5679999999997777 788766666533200      000     00001111111111366777 899988877  56


Q ss_pred             CeEEEEeccCCeeE------EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160          174 GHLFIWKKKGGKLV------RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       174 g~v~~wd~~~~~~~------~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd  222 (316)
                      |.|+-++..+....      ..+ ..-=..+..|.+.|+|.+.+..  |+.++-+.
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~  160 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL  160 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence            99988886432111      111 1111467899999999887666  77764433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.05  E-value=0.49  Score=38.82  Aligned_cols=158  Identities=11%  Similarity=0.073  Sum_probs=83.9

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC----CCeEEE-e
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLIS-Y  110 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s-~  110 (316)
                      ....|+|.|++ .++++--..|.|++++...++..       ++..  ...+..........|+++|+    +.+.++ +
T Consensus        33 ~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~-------~v~~--~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           33 SPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKT-------ELGE--VPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-------EEEE--CTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEe-------eecc--cCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            46799999999 66666554899999986655411       1111  11111233566889999995    445554 2


Q ss_pred             --cCCcEEEEEcCCCCCCCCccCCccccccCCC-cceeeCCcCCceeeeEEEecCCCcEEEEecc-------------CC
Q 021160          111 --NDELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-------------CG  174 (316)
Q Consensus       111 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg  174 (316)
                        .+..|.-|.+....... ..     +...+. +..+.. ........+.| .|+|.+.++.++             .|
T Consensus       103 ~~~~~~v~R~~~~~~~~~~-~~-----~~~~~~i~~~~p~-~~~H~g~~l~f-gpDG~Lyvt~Gd~~~~~~~qd~~~~~G  174 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSG-EQ-----LGAPDTVFRGIPK-GVIHNGGRIAF-GPDKMLYAGTGESGDTGLSQDRKSLGG  174 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTT-CC-----BCCCEEEEEEECC-CSSCCCCCEEE-CTTSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred             cCCCCEEEEEEeCCCCccc-cc-----CCCcEEEEEcCCC-CCCccCccccC-CCCCCEEEEECCCCCCccccCCCCCCC
Confidence              35667777765421000 00     000011 111111 11112567888 999987776542             35


Q ss_pred             eEEEEeccCC----e---eEEEe-ecCccceEEEEEcCCCCeEEEE
Q 021160          175 HLFIWKKKGG----K---LVRLM-VGDRHVVNQLEPHPHIPMFATC  212 (316)
Q Consensus       175 ~v~~wd~~~~----~---~~~~~-~~~~~~v~~~~~~p~~~~l~s~  212 (316)
                      .|.-.+....    .   ....+ .+|. ....++|+|++.++++-
T Consensus       175 ~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          175 KILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             EEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence            5555565421    0   01112 2454 35679999988776544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.04  E-value=0.45  Score=38.31  Aligned_cols=63  Identities=10%  Similarity=0.148  Sum_probs=36.7

Q ss_pred             CCcEEEEecc------CCeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEecCCCCC
Q 021160          163 NDEYVMSGSD------CGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~------dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~-----~i~iwd~~~~~  227 (316)
                      ++.+++.|+.      -..+.+||+.+.+-..  .++.....-..+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            5667777765      2468899988765322  12211111122222  567777776554     58889998876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.80  E-value=0.45  Score=39.16  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcc---eeeCCcCCceeeeEEEecCC---CcEE
Q 021160           94 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYSGHRNSQTVKGVNFFGPN---DEYV  167 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~---~~~l  167 (316)
                      ....++|.|+|+++++..++.|++++  .+..              ..+.   .+....  .....+++ +|+   +..|
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~--------------~~~~~~~v~~~g~--~~p~gia~-~pdf~~~g~l   92 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRL--------------STYAELSVYHRGE--SGLLGLAL-HPRFPQEPYV   92 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEE--------------EEEEECCCCCSTT--CSEEEEEE-CTTTTTSCEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCc--------------cEeecceEeecCC--CCceeEEE-CCCCCCCCEE
Confidence            45689999999988887779999998  3300              0111   111112  23789999 887   4444


Q ss_pred             EEe-ccC-----CeEEEEeccCCe-----e-EEEee---cCccceEEEEEcCCCCeEEEEe
Q 021160          168 MSG-SDC-----GHLFIWKKKGGK-----L-VRLMV---GDRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       168 ~~~-~~d-----g~v~~wd~~~~~-----~-~~~~~---~~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      +.+ ...     ..|..++...++     . +..+.   ........++|.|++.+.++.+
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            444 332     678888876432     1 12233   1112346799999998766643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.78  E-value=0.59  Score=37.63  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=36.0

Q ss_pred             CCcEEEEecc------CCeEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160          163 NDEYVMSGSD------CGHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~------dg~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~  227 (316)
                      ++.+++.|+.      -..+.+||+.+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            5667777764      23589999987653322  2211111122222  56676666643     357789998876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.78  E-value=0.33  Score=39.13  Aligned_cols=63  Identities=10%  Similarity=0.115  Sum_probs=35.5

Q ss_pred             CCcEEEEeccC-------CeEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeC------CCcEEEecCCCCC
Q 021160          163 NDEYVMSGSDC-------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTD  227 (316)
Q Consensus       163 ~~~~l~~~~~d-------g~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~~~------d~~i~iwd~~~~~  227 (316)
                      ++.+++.|+.+       ..+.+||+.+.+-...  ++.....- +++. .++++++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            56677777653       3578889887653322  21111111 1222 35666666653      2358899998875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.23  E-value=0.93  Score=37.33  Aligned_cols=102  Identities=14%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCC-Ccceee-CCcCCceeeeEEEecCC---CcEEE
Q 021160           94 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYS-GHRNSQTVKGVNFFGPN---DEYVM  168 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~~---~~~l~  168 (316)
                      ....++|.|+|+++++-.++.|++++. .+                . .+..+. ..........+++ +|+   +..|+
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G----------------~~~~~~~~v~~~g~~g~~gia~-~pdf~~~g~ly   91 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISP-SG----------------KKLVASFDVANVGEAGLLGLAL-HPEFPKKSWVY   91 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECS-SC----------------EEEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeC-CC----------------ceEeeccceeecCCCceeeEEe-CCCCCcCCEEE
Confidence            467899999999888877799999863 33                1 111110 0111123788998 887   44444


Q ss_pred             Eecc----C----CeEEEEeccCC-------eeE-EEeec-CccceEEEEEcCCCCeEEEEe
Q 021160          169 SGSD----C----GHLFIWKKKGG-------KLV-RLMVG-DRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       169 ~~~~----d----g~v~~wd~~~~-------~~~-~~~~~-~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      .+..    +    ..|..|+....       +.+ ..+.. .......++|.|++.++++.+
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            4332    3    56777876643       111 12321 112346799999998766644

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.18  E-value=1.1  Score=36.89  Aligned_cols=185  Identities=12%  Similarity=0.182  Sum_probs=98.4

Q ss_pred             ceeeEEEEeeCCCcc-eEEEeccc-cccccCCCCccceEEEEECC--CCCc-EEEEEec--CCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSDSAT-RLFYCSSF-SENSKQPMNSIRLNAIVIDP--RNPN-YFAVGGS--DEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~-~~~~~~~~-~~~~~~~gh~~~v~~~~~~~--~~~~-~l~~g~~--dg~v~~wd~~~~~~~~~~~   74 (316)
                      .|.|.++|+.+.... ..+..... ..     ........+.+.+  ++.. ++++-..  +..+.+|++....-     
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~-----~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-----  151 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLD-----ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-----  151 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCC-----GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-----
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCC-----cCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-----
Confidence            478889998743221 12222110 00     0122445666644  3422 4444333  56788888765320     


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEEec----C--------------CcEEEEEcCCCCCCCCccCCcccc
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----D--------------ELVYLFEKNMGLGPSPLSLSPEDL  136 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----d--------------~~i~iwd~~~~~~~~~~~~~~~~~  136 (316)
                          ... ....+....-...+.+.+.++|.++++..    |              +.|+.+|.  +             
T Consensus       152 ----~~~-~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-------------  211 (355)
T 3sre_A          152 ----SLL-HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-------------  211 (355)
T ss_dssp             ----EEE-EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-------------
T ss_pred             ----EEE-EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-------------
Confidence                000 11111111234578899999999887743    1              23444432  2             


Q ss_pred             ccCCCcceeeCCcCCceeeeEEEecCCCcEEEEe-ccCCeEEEEeccC-Cee--EEEeecCccceEEEEEcC-CCCeEEE
Q 021160          137 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKG-GKL--VRLMVGDRHVVNQLEPHP-HIPMFAT  211 (316)
Q Consensus       137 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~~wd~~~-~~~--~~~~~~~~~~v~~~~~~p-~~~~l~s  211 (316)
                          ..+.+...-..  .+.++| +|+++.++.+ +..+.|+.|++.. ++.  ...+ ...+..-.+++.+ +|++.++
T Consensus       212 ----~~~~~~~~l~~--pNGia~-spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          212 ----DVRVVAEGFDF--ANGINI-SPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             ----CCEEEEEEESS--EEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred             ----eEEEeecCCcc--cCcceE-CCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence                12222222222  688999 9999877665 4678999999863 332  2233 2235667788998 5888776


Q ss_pred             EeCC-CcEEEecCC
Q 021160          212 CGIE-KTVKLWAPM  224 (316)
Q Consensus       212 ~~~d-~~i~iwd~~  224 (316)
                      +..+ +.|..|+..
T Consensus       284 ~~~~g~~v~~~~P~  297 (355)
T 3sre_A          284 CHPNGMRIFFYDAE  297 (355)
T ss_dssp             EESCHHHHHSCCTT
T ss_pred             ecCCceEEEEECCC
Confidence            6544 244444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.08  E-value=0.95  Score=44.26  Aligned_cols=149  Identities=11%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             EEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeE
Q 021160           97 GLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  176 (316)
Q Consensus        97 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  176 (316)
                      +.-.+|..++++.-...++.|||+++.                ..++   .|.-...|.--.|.++  +.|+..+ +..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k----------------~klk---s~~~~e~VvfWkWis~--~~l~lVT-~~aV  127 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMK----------------SKMK---AHTMTDDVTFWKWISL--NTVALVT-DNAV  127 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHh----------------hhhc---ccccCCCceEEEecCC--CeeEEEc-CCeE
Confidence            345678777777766889999999876                3333   3332233666666443  3444444 4579


Q ss_pred             EEEeccC-CeeEEEeecC----ccceEEEEEcCCCCeEEEEe-------CCCcEEEecCCCCCCCCCCCCcccceeeeec
Q 021160          177 FIWKKKG-GKLVRLMVGD----RHVVNQLEPHPHIPMFATCG-------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ  244 (316)
Q Consensus       177 ~~wd~~~-~~~~~~~~~~----~~~v~~~~~~p~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  244 (316)
                      +-|++.. ..+...+..|    ...|.....+++.++++..|       ..|.+.+|..+.+..+.+.+|...-.+...-
T Consensus       128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKME  207 (1630)
T ss_pred             EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccC
Confidence            9999963 3444444433    35677788899999965333       3578999999888877788777654332211


Q ss_pred             C-CCCceeEEecCC----CeEEEEEecc
Q 021160          245 G-REDHSRITLTPD----VIMHVLRLQR  267 (316)
Q Consensus       245 ~-~~~~~~~s~~~d----~~~~~w~~~~  267 (316)
                      . +....+++....    +.+++.++..
T Consensus       208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             CCCCCceEEEEEEecCCCceEEEEecCC
Confidence            1 122334443333    7889998854

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.83  E-value=0.8  Score=37.72  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEEee---cCccceEEEEEcCC---CCe-EEEEeC---C----CcE
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMV---GDRHVVNQLEPHPH---IPM-FATCGI---E----KTV  218 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~---~~~~~v~~~~~~p~---~~~-l~s~~~---d----~~i  218 (316)
                      ...++| .|+|.++++ ..+|.|++++ ..++ .+..+.   ........|+++|+   +.. .++-+.   +    ..|
T Consensus        31 P~~ia~-~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           31 PWSIAP-LGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             EEEEEE-EETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CeEEEE-cCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            788998 889985555 5569999997 3455 222221   12346789999997   444 444332   3    466


Q ss_pred             EEecCCCC
Q 021160          219 KLWAPMPT  226 (316)
Q Consensus       219 ~iwd~~~~  226 (316)
                      ..|+....
T Consensus       108 ~r~~~~~~  115 (354)
T 3a9g_A          108 IRGRLDGS  115 (354)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            67776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.23  Score=40.54  Aligned_cols=145  Identities=15%  Similarity=0.113  Sum_probs=75.4

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEE---EccCCCeEEE--ecCCcEEEEEcCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA---YSNTSELLIS--YNDELVYLFEKNM  122 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~s--~~d~~i~iwd~~~  122 (316)
                      .+++.++.||.|.-+|..+++........              ...++....   ...++..++.  ..||.|+.++..+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--------------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~   76 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--------------NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ   76 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--------------GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--------------ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC
Confidence            47888999999999999988754332111              000111100   0012334433  3688888888766


Q ss_pred             CCCCCCccCCccccccCCCcceeeCCc--CCceeee----EEE---ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          123 GLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKG----VNF---FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~----~~~---~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                      +                .....+....  ...++..    +..   ....+..+++|+.+|.+...|+.+|+.+..+...
T Consensus        77 G----------------~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           77 G----------------LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             E----------------EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             C----------------cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            5                1111111100  0000110    000   0014678899999999999999999999888632


Q ss_pred             c--cce-----EEEEEc-----CCCCeEEEEeCCCcEEEec
Q 021160          194 R--HVV-----NQLEPH-----PHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       194 ~--~~v-----~~~~~~-----p~~~~l~s~~~d~~i~iwd  222 (316)
                      .  ..+     .+....     ..+..++.+..+..+.+.+
T Consensus       141 ~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          141 SKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             CBCC--------------------CCEEEEEEEEEECEECC
T ss_pred             CCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            1  100     011110     1134566666677777766

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.77  E-value=1.6  Score=36.86  Aligned_cols=193  Identities=8%  Similarity=0.078  Sum_probs=118.3

Q ss_pred             eeeEEEEeeC-CCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEE-Ee------cCCcEEEEeCcCCcccCCCC
Q 021160            3 LFNMLFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV-GG------SDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         3 g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~-g~------~dg~v~~wd~~~~~~~~~~~   74 (316)
                      ..|.-|++.. ..+.++|..+..-.       ...|-.-..++++ ++++. |-      -.|.+.+|..+.+.      
T Consensus       125 taVyHWsi~~~s~P~kvFdR~~~L~-------~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~------  190 (494)
T 1bpo_A          125 NAVYHWSMEGESQPVKMFDRHSSLA-------GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV------  190 (494)
T ss_dssp             SEEEEEESSSSCCCEEEEECCGGGT-------TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCC------
T ss_pred             CeeEEecccCCCCchhheecchhcc-------cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccc------
Confidence            4688999975 34666666543321       3567788889988 55544 42      24778899988553      


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCC---eEEEec----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                                ...+.+|......+....+..   +++.+.    .++++|.++....... ..+..      +....+-.
T Consensus       191 ----------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~-~~f~k------k~vdv~fp  253 (494)
T 1bpo_A          191 ----------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPK------KAVDVFFP  253 (494)
T ss_dssp             ----------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC-CCCCC------EEEECCCC
T ss_pred             ----------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC-CCccc------eeeeeeCC
Confidence                      233377777665554433221   333332    4789999986531000 00000      01111111


Q ss_pred             C-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          148 H-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       148 ~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      . ......-++.. ++....+..-+.-|.+++||++++.++..-+-....|...+-+....-++.....|.|.--.+...
T Consensus       254 pe~~~DFPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          254 PEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TTSTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             cccccCceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            1 11122456666 778888999999999999999999998877666677777666666566777778887776666554


Q ss_pred             C
Q 021160          227 D  227 (316)
Q Consensus       227 ~  227 (316)
                      .
T Consensus       333 ~  333 (494)
T 1bpo_A          333 N  333 (494)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.65  E-value=1.4  Score=36.23  Aligned_cols=153  Identities=11%  Similarity=0.104  Sum_probs=78.4

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC----CCeEEEe-
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISY-  110 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~-  110 (316)
                      ....|+|.|++ +.++++...|.|++++.. ++...      ++...  ..+..........++++|+    +.++++. 
T Consensus        19 ~P~~i~~~pdG-~~l~V~e~~G~i~~~~~~-g~~~~------~~~~~--~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           19 HPWALAFLPDN-HGMLITLRGGELRHWQAG-KGLSA------PLSGV--PDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             SEEEEEECSTT-CCEEEEETTTEEEEEETT-TEECC------CCBSC--CCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CcEEEEEcCCC-CEEEEEeCCceEEEEeCC-Cceee------EecCC--cccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence            45799999998 624455567999999853 33110      11111  0111122345789999995    4555552 


Q ss_pred             c-------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc----CCceeeeEEEecCCCcEEEEecc-------
Q 021160          111 N-------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSD-------  172 (316)
Q Consensus       111 ~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~-------  172 (316)
                      .       ...|..|++.....         .+..  ....+....    .......++| .|+|.+.++-++       
T Consensus        89 ~~~~~g~~~~~v~r~~~~~~~~---------~~~~--~~~i~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~Gd~~~~~~~  156 (353)
T 2g8s_A           89 EVGDDGKAGTAVGYGRLSDDLS---------KVTD--FRTVFRQMPKLSTGNHFGGRLVF-DGKGYLFIALGENNQRPTA  156 (353)
T ss_dssp             EECSSSCEEEEEEEEEECTTSS---------BEEE--EEEEEECSSCCBSSSCCCCCEEE-CSSSEEEEEECCTTCGGGG
T ss_pred             CCCCCCCceeEEEEEEECCCCC---------CCCc--eEEEEEECCCCCCCcccCccEEE-CCCCcEEEEECCCCCCCcc
Confidence            2       23566666643210         0000  000111110    0011457888 999976666433       


Q ss_pred             ------CCeEEEEeccCCe------------eEEEe-ecCccceEEEEEcC-CCCeEEE
Q 021160          173 ------CGHLFIWKKKGGK------------LVRLM-VGDRHVVNQLEPHP-HIPMFAT  211 (316)
Q Consensus       173 ------dg~v~~wd~~~~~------------~~~~~-~~~~~~v~~~~~~p-~~~~l~s  211 (316)
                            .|.|.-++....-            ....+ .++. ....++|+| ++.++++
T Consensus       157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                  2467777765220            11112 2343 467899999 6665544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.52  E-value=1.6  Score=35.69  Aligned_cols=185  Identities=9%  Similarity=0.107  Sum_probs=103.3

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc----CCC---eEEE-e-c--CCcEE
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN----TSE---LLIS-Y-N--DELVY  116 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~---~l~s-~-~--d~~i~  116 (316)
                      .+++.....+.+.+||+ .++.+              ..+ .  ...++.+..-|    .|+   ++++ . .  +++|.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l--------------~~~-~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKML--------------HSY-N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEE--------------EEE-C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEE--------------EEc-c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence            45666677889999999 56522              111 1  12344444444    232   3333 3 3  57899


Q ss_pred             EEEcCCCCCCCCccCCccccccCCCcceeeCC-----cCCceeeeEEEe-cC-CCc-EEEEeccCCeEEEEecc------
Q 021160          117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFF-GP-NDE-YVMSGSDCGHLFIWKKK------  182 (316)
Q Consensus       117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~-~~-~~~-~l~~~~~dg~v~~wd~~------  182 (316)
                      +|++....               ..+..+...     .....+..++++ ++ .+. ++++...+|.+..|++.      
T Consensus       103 vf~iDp~~---------------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A          103 IYAIDGKN---------------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEECTTT---------------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEECCCC---------------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            99874221               122222110     110226666653 34 343 67778888999999983      


Q ss_pred             -CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC-----C-CCCCC-CCcc-cceeeeec-CCCCc-ee
Q 021160          183 -GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----D-FPPLP-DNAE-KIMKANKQ-GREDH-SR  251 (316)
Q Consensus       183 -~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~-----~-~~~~~-~~~~-~~~~~~~~-~~~~~-~~  251 (316)
                       +.+.++++... +.+-.++..+....|..+-++.-|..++.+..     + +..+. ++.. .+-.++.. ..++. ++
T Consensus       168 ~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          168 ISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             ccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence             34667777643 56788889998888999988866666664422     1 11111 1111 22222222 23333 45


Q ss_pred             EEec-CCCeEEEEEec
Q 021160          252 ITLT-PDVIMHVLRLQ  266 (316)
Q Consensus       252 ~s~~-~d~~~~~w~~~  266 (316)
                      +..+ .+..+.+++.+
T Consensus       247 ivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEGGGTEEEEEESS
T ss_pred             EEEcCCCCEEEEEECC
Confidence            4444 67899999986

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.01  E-value=2.1  Score=35.09  Aligned_cols=107  Identities=18%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             cEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC---CcEEEE
Q 021160           94 HITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMS  169 (316)
Q Consensus        94 ~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~  169 (316)
                      ....|+|.|+|+ ++++...+.|++++.......     ...+     ....+.....  ....+++ +|+   +..|..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~-----~~~~-----~~~v~~~g~~--g~~gia~-~pdf~~~g~lYv   85 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA-----PLSG-----VPDVWAHGQG--GLLDVVL-APDFAQSRRIWL   85 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECC-----CCBS-----CCCCCCSTTC--SEEEEEE-CTTHHHHCEEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee-----EecC-----CcccccCCCC--CceeEEE-CCCCCCCCEEEE
Confidence            467899999999 888877899999985432000     0000     0001111122  2788998 885   444443


Q ss_pred             e-cc-------CCeEEEEeccCC--ee--EEE----eec---CccceEEEEEcCCCCeEEEEe
Q 021160          170 G-SD-------CGHLFIWKKKGG--KL--VRL----MVG---DRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       170 ~-~~-------dg~v~~wd~~~~--~~--~~~----~~~---~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      . +.       ...|..+++...  +.  ...    +..   .......++|.|++.+.++.+
T Consensus        86 ~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           86 SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             EEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            3 22       235666666432  11  111    111   111235799999997766544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.25  E-value=1.8  Score=35.35  Aligned_cols=51  Identities=14%  Similarity=-0.046  Sum_probs=25.8

Q ss_pred             eEEEEeccCCe--eEEEeecCccceEEEEEcCCCCeEEEEeCCC------cEEEecCCCCC
Q 021160          175 HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTD  227 (316)
Q Consensus       175 ~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~------~i~iwd~~~~~  227 (316)
                      .+.+||+.+.+  .+..++.....-.++  ..++++++.|+.++      .|.++++++++
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            47788987654  333343222222222  23667777777543      35556777776

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.39  E-value=6.5  Score=35.99  Aligned_cols=190  Identities=13%  Similarity=0.099  Sum_probs=100.0

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  114 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  114 (316)
                      ..|.++....++  .|..|+.+| +..||..+.+...            .  . ......|.++.. .+|.+.+++.+ -
T Consensus        63 ~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~------------~--~-~~~~~~i~~i~~-~~g~lWigt~~-G  122 (758)
T 3ott_A           63 TRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQ------------P--E-TDFPTDVRTMAL-QGDTLWLGALN-G  122 (758)
T ss_dssp             SCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECC------------C--S-CCCCSCEEEEEE-ETTEEEEEETT-E
T ss_pred             ceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEEC------------c--c-cCCCceEEEEEe-cCCcEEEEcCC-c
Confidence            468888887766  555666554 7889988765211            0  0 111234666654 46666665544 6


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-  190 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-  190 (316)
                      +..+|..+.                 ....+.   .......|.++.. ..++.+.+ |+.. -+..++..+++..... 
T Consensus       123 l~~~~~~~~-----------------~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~  182 (758)
T 3ott_A          123 LYTYQLQSR-----------------KLTSFDTRRNGLPNNTIYSIIR-TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPL  182 (758)
T ss_dssp             EEEEETTTC-----------------CEEEECHHHHCCSCSCEEEEEE-CTTCCEEE-EETT-EEEEEETTTTEEEEECC
T ss_pred             ceeEeCCCC-----------------eEEEeccCCCCcCCCeEEEEEE-cCCCCEEE-EeCC-CHhhCccCCCceEEecC
Confidence            888887654                 222221   0011123777776 66666554 4544 5778888776643211 


Q ss_pred             ecC----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCC-cccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          191 VGD----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN-AEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       191 ~~~----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ...    ...|.++...+++..|-.|.. +-+..++..+++...+... ...+..+. ...++.+.+. +.+| +.+++.
T Consensus       183 ~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWig-T~~G-l~~~~~  258 (758)
T 3ott_A          183 PVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLA-LDGNGDLLAG-TDNG-LYVYHN  258 (758)
T ss_dssp             CCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEE-ECTTCCEEEE-ETTE-EEEECC
T ss_pred             CCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEE-EcCCCCEEEE-eCCc-eeEEec
Confidence            111    124788888777664333443 4577888776543222111 12232332 3334544444 3444 556665


Q ss_pred             ccc
Q 021160          266 QRR  268 (316)
Q Consensus       266 ~~~  268 (316)
                      .+.
T Consensus       259 ~~~  261 (758)
T 3ott_A          259 DTT  261 (758)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.45  E-value=8  Score=35.09  Aligned_cols=148  Identities=14%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             CCCcEEEEEecC------CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC--CcE
Q 021160           45 RNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND--ELV  115 (316)
Q Consensus        45 ~~~~~l~~g~~d------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d--~~i  115 (316)
                      ++ .+++.|+.+      ..+.+||+.+.++......+         .....|     +++...++++++. |.+  +.+
T Consensus       451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p---------~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v  515 (695)
T 2zwa_A          451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS---------HTRFRH-----SACSLPDGNVLILGGVTEGPAM  515 (695)
T ss_dssp             TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS---------BCCBSC-----EEEECTTSCEEEECCBCSSCSE
T ss_pred             CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC---------CCcccc-----eEEEEcCCEEEEECCCCCCCCE
Confidence            55 788888754      35788999887654321100         000111     2233236776655 432  278


Q ss_pred             EEEEcCCCCCCCCccCCccccccCCCcceeeC------CcCCceeeeEEEecCC-CcEEEEecc--C-----CeEEEEec
Q 021160          116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG------HRNSQTVKGVNFFGPN-DEYVMSGSD--C-----GHLFIWKK  181 (316)
Q Consensus       116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~-~~~l~~~~~--d-----g~v~~wd~  181 (316)
                      .+||..+..                 ...+..      ....  ...+.+ ..+ +.+++.|+.  +     ..+..||+
T Consensus       516 ~~yd~~t~~-----------------W~~~~~~g~~p~~r~~--~~a~v~-~~~~~~iyv~GG~~~~~~~~~~~v~~yd~  575 (695)
T 2zwa_A          516 LLYNVTEEI-----------------FKDVTPKDEFFQNSLV--SAGLEF-DPVSKQGIILGGGFMDQTTVSDKAIIFKY  575 (695)
T ss_dssp             EEEETTTTE-----------------EEECCCSSGGGGSCCB--SCEEEE-ETTTTEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred             EEEECCCCc-----------------eEEccCCCCCCCcccc--eeEEEE-eCCCCEEEEECCcCCCCCeeeCcEEEEEc
Confidence            999987651                 111111      1111  223444 333 667777765  2     46889998


Q ss_pred             cCCee-----EEEeec---CccceEEEEEcCCCCeEEEEeCC--------CcEEEecCCCCC
Q 021160          182 KGGKL-----VRLMVG---DRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPTD  227 (316)
Q Consensus       182 ~~~~~-----~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d--------~~i~iwd~~~~~  227 (316)
                      .+.+-     -..+..   ....-.+++...++++++.|+.+        ..+.+||+.+.+
T Consensus       576 ~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          576 DAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             CTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             cCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            87761     112211   11111123333336677777643        458888888766

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.25  E-value=4.8  Score=32.19  Aligned_cols=137  Identities=8%  Similarity=0.002  Sum_probs=73.6

Q ss_pred             EEccCCCeEEEec-----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-
Q 021160           99 AYSNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-  172 (316)
Q Consensus        99 ~~~~~~~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-  172 (316)
                      .|+++++.|+-..     ...|+..++...                 ..+.+..+.    +  .++ +++++.|+-.+. 
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-----------------~~~~lt~~~----~--~~~-~~~g~~iy~t~~g  165 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGE-----------------EKKKIKNHY----L--FTC-NTSDRYFYYNNPK  165 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSC-----------------CCEEEESSC----C--CCS-EEETTEEEEECTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCC-----------------CeEEEeCCC----c--eEe-eEECCEEEEEeCC
Confidence            6777887555432     445666666543                 334444332    2  234 567777775554 


Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC--CcEEEecCCCCCCCCCCCCcccceeeeecCCCCce
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS  250 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (316)
                      ...|...++..+.....+.+   ... ..++|++.+|+-....  ..|..-++.+.....+....  +   .++.+.+..
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~--~---~~~~~~g~~  236 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN--I---EHYNVYGSL  236 (302)
T ss_dssp             TCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC--E---EEEEEETTE
T ss_pred             CceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC--c---ceEEECCCE
Confidence            67888888876654433332   222 3466988887765433  35666677666544443221  1   234555555


Q ss_pred             eEEe--cCCCeEEEEEeccc
Q 021160          251 RITL--TPDVIMHVLRLQRR  268 (316)
Q Consensus       251 ~~s~--~~d~~~~~w~~~~~  268 (316)
                      +.-.  .....|...++...
T Consensus       237 Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          237 IFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEEEECSSSCEEEEEETTSC
T ss_pred             EEEEECCCCcEEEEEECCCC
Confidence            5433  22345555555443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.17  E-value=8.9  Score=35.08  Aligned_cols=171  Identities=12%  Similarity=0.042  Sum_probs=93.9

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccC-CCcccEEEEEEccCCCeEEEecCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      ..|.++.-.+++ .+ -.|+ ++.|..||..+++...          +....... .....|.++.-.++|++.+++..+
T Consensus       373 ~~v~~i~~d~~g-~l-Wigt-~~GL~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~  439 (758)
T 3ott_A          373 NRIRHIYEDKEQ-QL-WIAT-DGSINRYDYATRQFIH----------YNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLG  439 (758)
T ss_dssp             SCEEEEEECTTS-CE-EEEE-TTEEEEEETTTTEEEE----------EEEECCC--CBSSSEEEEEECTTSEEEEEESSS
T ss_pred             CceEEEEECCCC-CE-EEEe-CCcHhhcCcCCCcEEE----------eecCCCcCCCCCceEEEEEEcCCCCEEEEECCC
Confidence            358888888877 43 3455 4579999988765311          11000000 013458888888888877776666


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--cCCceeeeEEEecCCCcEEEE-eccCCeEEEEeccCCeeEEEe
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      -|.++|..+........     +   .....+...  .....|.++.. ..+|.+.+. ++. +-+..+|..+++.....
T Consensus       440 Gl~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi~~~t~-~Gl~~~d~~~~~~~~~~  509 (758)
T 3ott_A          440 GIFVVDKHKLMQSTSGQ-----Y---IAEQNYSVHNGLSGMFINQIIP-DNEGNVWVLLYNN-KGIDKINPRTREVTKLF  509 (758)
T ss_dssp             CEEEEEHHHHHHCCSSE-----E---ECSEEECGGGTCSCSCEEEEEE-CTTSCEEEEETTC-SSEEEEETTTTEEEEEC
T ss_pred             ceEEEccccccccCCcc-----e---ecccccccccccccceeeeEEE-cCCCCEEEEccCC-CCcEEEeCCCCceEEec
Confidence            68888865310000000     0   000011100  01123888877 778887663 444 45788898877654332


Q ss_pred             ec---CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160          191 VG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP  230 (316)
Q Consensus       191 ~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~  230 (316)
                      ..   ....+.++....++.+.+. +.. -+..++..+.....
T Consensus       510 ~~~~~~~~~~~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~  550 (758)
T 3ott_A          510 ADELTGEKSPNYLLCDEDGLLWVG-FHG-GVMRINPKDESQQS  550 (758)
T ss_dssp             TTTSCGGGCEEEEEECTTSCEEEE-ETT-EEEEECC--CCCCB
T ss_pred             CCCcCCCcccceEEECCCCCEEEE-ecC-ceEEEecCCCceEE
Confidence            11   1245778888888877544 334 48888987766433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.70  E-value=7.4  Score=31.84  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=46.2

Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE--EEee----cCccceEEEEEcCC----CCeEEEE--eCCCcEEEe
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV--RLMV----GDRHVVNQLEPHPH----IPMFATC--GIEKTVKLW  221 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~----~~~~~v~~~~~~p~----~~~l~s~--~~d~~i~iw  221 (316)
                      .+.++| .|+|.++++--..|.|++++...++..  ..+.    ........|+++|+    +.+.++-  ..+..|.-|
T Consensus        34 P~~ia~-~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           34 PWGLAP-LPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             EEEEEE-CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             ceEEEE-cCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            789999 899998777766899999987666532  2221    22456789999995    4333332  234455556


Q ss_pred             cCCC
Q 021160          222 APMP  225 (316)
Q Consensus       222 d~~~  225 (316)
                      .+..
T Consensus       113 ~~~~  116 (347)
T 3das_A          113 LYDE  116 (347)
T ss_dssp             EBCT
T ss_pred             EeCC
Confidence            5544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.40  E-value=11  Score=33.16  Aligned_cols=111  Identities=6%  Similarity=-0.076  Sum_probs=64.9

Q ss_pred             EEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEec
Q 021160           95 ITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS  171 (316)
Q Consensus        95 i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~  171 (316)
                      ...+..+|+|++++. + .+.++.++|++.........     +.  ++...+. ...-.-.....+| .++|....+-.
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-----~~--~~~~~~~ae~e~GlGPlHt~F-d~~G~aYTtlf  396 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-----LA--DPRDVIVGEPELGLGPLHTTF-DGRGNAYTTLF  396 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC-----CS--CGGGGEEECCBCCSCEEEEEE-CSSSEEEEEET
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc-----cc--CcccceEeeccCCCcccEEEE-CCCCceEeeee
Confidence            446789999997766 4 48999999997531000000     00  0001111 1111122678888 88996666777


Q ss_pred             cCCeEEEEeccCC----------eeEEEeecCccceEEE-----EEcCCCCeEEEEe
Q 021160          172 DCGHLFIWKKKGG----------KLVRLMVGDRHVVNQL-----EPHPHIPMFATCG  213 (316)
Q Consensus       172 ~dg~v~~wd~~~~----------~~~~~~~~~~~~v~~~-----~~~p~~~~l~s~~  213 (316)
                      -|..|..|++...          ..+..+.-|-.+-...     .-.|+|++|++.+
T Consensus       397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            8999999998643          3455565554332211     2357888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.06  E-value=9.4  Score=30.97  Aligned_cols=53  Identities=6%  Similarity=-0.172  Sum_probs=26.4

Q ss_pred             CeEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEecC--CCCC
Q 021160          174 GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAP--MPTD  227 (316)
Q Consensus       174 g~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~------d~~i~iwd~--~~~~  227 (316)
                      ..+.+||+.+.+-.  ..++.....-.+++.. ++++++.|+.      ...+.+||+  .+..
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~  230 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK  230 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc
Confidence            57899998876533  2332111110223332 5566666653      235777776  4443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.84  E-value=14  Score=31.54  Aligned_cols=105  Identities=10%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             cEEEEEEccCCCeEEEecC-CcEEEEEcCCCCCCCCccCCccccccCCCcceeeC----CcCCceeeeEEEecCC---Cc
Q 021160           94 HITGLAYSNTSELLISYND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG----HRNSQTVKGVNFFGPN---DE  165 (316)
Q Consensus        94 ~i~~~~~~~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~---~~  165 (316)
                      ..+.|+|.|+|+++++... +.|++++...+..              ..+..+..    ......+..|+| +|+   +.
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~--------------~~~~~~~~~~~~~~g~~Gllgia~-~Pdf~~~g   92 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV--------------KTVFQVPEIVNDADGQNGLLGFAF-HPDFKNNP   92 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--------------EEEEECTTCCCCTTSSCSEEEEEE-CTTTTTSC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE--------------eEEecCCccccccCCCCceeEEEE-CCCcCcCC
Confidence            4579999999999998765 4688887654310              01111111    011123789999 884   44


Q ss_pred             EEEEe-cc------------CCeEEEEeccCC--e-----eEE-Eeec-CccceEEEEEcCCCCeEEEEe
Q 021160          166 YVMSG-SD------------CGHLFIWKKKGG--K-----LVR-LMVG-DRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       166 ~l~~~-~~------------dg~v~~wd~~~~--~-----~~~-~~~~-~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      .|... +.            ...|.-++...+  +     .+. .+.. .......|+|.|++.+.++.+
T Consensus        93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            44443 32            235666665432  1     111 1221 123468899999998866654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.35  E-value=15  Score=31.45  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCC--eEEEecCCcEEEEEcC
Q 021160           94 HITGLAYSNTSE--LLISYNDELVYLFEKN  121 (316)
Q Consensus        94 ~i~~~~~~~~~~--~l~s~~d~~i~iwd~~  121 (316)
                      .-+.|+|.|+|.  +|++-..|.|++++..
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            457899999985  8888889999999754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.24  E-value=13  Score=33.63  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             CCCcEEEEEecCC--cEEEEeCcCCccc
Q 021160           45 RNPNYFAVGGSDE--YARVYDIRKCHWY   70 (316)
Q Consensus        45 ~~~~~l~~g~~dg--~v~~wd~~~~~~~   70 (316)
                      ++ .+++.|+.++  .+.+||+.+.++.
T Consensus       500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~  526 (695)
T 2zwa_A          500 DG-NVLILGGVTEGPAMLLYNVTEEIFK  526 (695)
T ss_dssp             TS-CEEEECCBCSSCSEEEEETTTTEEE
T ss_pred             CC-EEEEECCCCCCCCEEEEECCCCceE
Confidence            55 7888887654  7899999987754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.75  E-value=11  Score=35.54  Aligned_cols=38  Identities=13%  Similarity=-0.029  Sum_probs=32.3

Q ss_pred             eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      .+.+++. .++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~-~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEE-ETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEee-cCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3667776 7788899999999999999999999987653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.62  E-value=0.84  Score=37.27  Aligned_cols=107  Identities=9%  Similarity=0.110  Sum_probs=62.1

Q ss_pred             CcEEEEeccCCeEEEEeccCCeeEEEeecCc-cceEEEEEc--C-CCCeEEEE-eCCCcEEEecCCCCCCCCCCCCcccc
Q 021160          164 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH--P-HIPMFATC-GIEKTVKLWAPMPTDFPPLPDNAEKI  238 (316)
Q Consensus       164 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~--p-~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~  238 (316)
                      +.+++.++.||.|+-+|..+|+..-.+.... .++....-.  + ++..++.. ..||.|..++..++... .+-.....
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccc
Confidence            4578899999999999999999988886531 222221100  1 22233333 57899988887765311 11000000


Q ss_pred             eeee-ec------------CCCCceeEEecCCCeEEEEEecccCcc
Q 021160          239 MKAN-KQ------------GREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       239 ~~~~-~~------------~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .... ..            ...+..+.+++.++.+...|+.+++..
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence            0000 00            013456788888998888888877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 5   NMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 64
           + +     D   +++   +         +   +  +  +  +    A   +D+  RV+ +
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVV 172

Query: 65  RKCHWYSPISSDTPVDTFC------PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 118
                 + +     V              I +     T  +      LL    D+ + ++
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232

Query: 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178
           + + G                       GH N   V+GV  F    ++++S +D   L +
Sbjct: 233 DVSTG----------------MCLMTLVGHDNW--VRGV-LFHSGGKFILSCADDKTLRV 273

Query: 179 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
           W  K  + ++ +    H V  L+ H   P   T  +++TVK+W
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 138 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 197
           +  E    SGHR+   V  V F  P    ++S S+   + +W  + G   R + G    V
Sbjct: 6   RPPEKYALSGHRSP--VTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 198 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 257
             +       + A+C  + T+KLW     +        +  + +          ++ + D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 258 VIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSD 299
             + +  +Q    +                ++G       +D
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 35/163 (21%)

Query: 19  FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP 78
              S   E+S   ++    +      +   +   G  D+  +++D+              
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------- 238

Query: 79  VDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQ 137
               C   L+G +N  + G+ + +  + ++S  +D+ + ++                D +
Sbjct: 239 ----CLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVW----------------DYK 277

Query: 138 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180
            +   +  + H +   V  ++F      YV++GS    + +W+
Sbjct: 278 NKRCMKTLNAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 44  PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 103
           P +  Y A G  D   RV+D         + S+    T             +  + ++  
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS--------VYSVVFTRD 265

Query: 104 SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162
            + ++S   D  V L+        S                  +   +   V  V     
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSD------SKTPNSGTCEVTYIGHKDFVLSV-ATTQ 318

Query: 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV------NQLEPHPHIPMFATCGIEK 216
           NDEY++SGS    +  W KK G  + ++ G R+ V      N     P   +FAT   + 
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378

Query: 217 TVKLW 221
             ++W
Sbjct: 379 KARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 24/172 (13%)

Query: 13  DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP 72
           DS T        SEN     +   + ++V    +      G  D   ++++++  +    
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANN--- 288

Query: 73  ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSL 131
            S     ++         +   +  +A +   E ++S   D  V  +             
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW------------- 335

Query: 132 SPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWK 180
              D +      +  GHRNS     V   +  GP      +GS      IWK
Sbjct: 336 ---DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 3e-10
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 33/175 (18%)

Query: 48  NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107
             F  G  D  A+++D+R+                C +   G  +  I  + +       
Sbjct: 197 RLFVSGACDASAKLWDVREGM--------------CRQTFTGHES-DINAICFFPNGNAF 241

Query: 108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 166
            +  +D    LF+                    +E   YS       +  V+F   +   
Sbjct: 242 ATGSDDATCRLFDLRA----------------DQELMTYSHDNIICGITSVSF-SKSGRL 284

Query: 167 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
           +++G D  +  +W         ++ G  + V+ L         AT   +  +K+W
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219
           F    ++ +S      L  W+   G  +     +   V   +         T   +K   
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 220 LW 221
           ++
Sbjct: 332 VY 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHI 206
                  KG N     ++ V +GS   ++FI+  K+  K+++ +   +  VN L      
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 207 PMFATCGIEKTVKLW 221
               + G +  +K W
Sbjct: 270 STLVSSGADACIKRW 284

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKT 217
           +  +   +    +   + I++K G K V++     H   V  ++  P      TCG ++ 
Sbjct: 15  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74

Query: 218 VKLWAPMP 225
             +W    
Sbjct: 75  AYVWTLKG 82

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 194
              + + P+V  GH +      +         ++SGSD   L +W    GK +R +VG  
Sbjct: 2   RRGELKSPKVLKGHDDH----VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225
             V   +   +I +  +      V       
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 194
           D +         GH N            +  +V+SGS    + +W  + G  +  + G +
Sbjct: 163 DPETETCLHTLQGHTNRV-----YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217

Query: 195 HVVNQLEPHPHIPMFATCGIEKTVKLW 221
            + + +E   +  +  +   + TVK+W
Sbjct: 218 SLTSGMELKDN--ILVSGNADSTVKIW 242

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 162 PNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 220
           P+   + S S    + IW     K+ + + VG R    QL          +      +  
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 221 WAP 223
             P
Sbjct: 308 VNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 19/102 (18%)

Query: 94  HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153
               L  +   + +   N   VY                   +    + ++Y+ H +   
Sbjct: 19  TAVVLGNTPAGDKIQYCNGTSVYTV----------------PVGSLTDTEIYTEHSHQ-- 60

Query: 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 195
                   P+  Y  SG   G++ IW       +        
Sbjct: 61  TTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 101

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHI 206
             +   +  +  F  +D  ++SGS+     I+  + GKLV   ++ D   +  +      
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 207 PMFATCGIEKTVKLW 221
            + A    +    L 
Sbjct: 337 -LVAAVEKDGQSFLE 350

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 207
           H  S+T KGV     +D+ ++SG     + IW K   +  R++ G    V  L+    + 
Sbjct: 9   HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 208 MFATC 212
           +  + 
Sbjct: 69  ITGSS 73

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 22/184 (11%), Positives = 53/184 (28%), Gaps = 12/184 (6%)

Query: 46  NPNYFAVGGSDEYARVYDIR--------KCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 97
           +      G  D   +++D            H  S +                   +    
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 98  LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157
                 + +        +      M       S++  D+    +  +       +    V
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT 217
             F  +D+Y++S S    + +W     + VR + G +  +  L+      +  +   + T
Sbjct: 144 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNT 199

Query: 218 VKLW 221
           ++LW
Sbjct: 200 IRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW---------KKKGGK 185
           D++     +V  GH              +++ ++SG+  G + +W            G  
Sbjct: 204 DIECGACLRVLEGHEELV-----RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221
            +R +V     V +L+         +   + T+ +W
Sbjct: 259 CLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180
           D+   +  Q ++  +     + V      +  ++S S  G L  ++
Sbjct: 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%)

Query: 43  DPRNPNYFAVGGSDEYARVYDI---RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 99
           D    +            ++             ++    ++           +   T + 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 100 YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159
            S    +   +N+  V + E +        +   +         + S   + Q       
Sbjct: 192 ISERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 160 FGPNDEYVMSGSDCGHL-----FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 214
              N    ++  +                 +           V  L  +       + G 
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309

Query: 215 EKTVKLW 221
           +  ++ W
Sbjct: 310 DGKLRFW 316

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 6e-04
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH---VVNQLEPHPHIPMFATCGI 214
             + P++  + +GS    + +W         +++   H    VN +          + G 
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQ 288

Query: 215 EKTVKLW 221
           +  +K W
Sbjct: 289 DSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 143 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLE 201
           QV  GH  +  +  ++    + + + S    GH+  W    G   R        ++  ++
Sbjct: 6   QVRYGHNKA--ITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 202 PHPHIPMFATCGIEKTVKLWA 222
                 +F     +    + A
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.82
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.81
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.68
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.59
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.59
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.47
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.46
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.37
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.51
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.42
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.86
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.86
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.99
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.27
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.1
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.1
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.94
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.31
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.12
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.77
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.08
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.41

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-36  Score=245.99  Aligned_cols=250  Identities=13%  Similarity=0.175  Sum_probs=202.9

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      +.|.+||+.+....+.+.           +|...|++++|+|++ ++|++|+.||+|++||+.+.+.             
T Consensus        38 ~~v~i~~~~~~~~~~~~~-----------~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~-------------   92 (311)
T d1nr0a1          38 TSVYTVPVGSLTDTEIYT-----------EHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH-------------   92 (311)
T ss_dssp             TEEEEEETTCSSCCEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC-------------
T ss_pred             CEEEEEECCCCceeEEEc-----------CCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecccc-------------
Confidence            358899998776666553           378899999999998 8999999999999999987752             


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEec---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                      ........|..+|.+++|+|++++++++.   +..+++|+++++                +....+.+|...  |.+++|
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~----------------~~~~~l~~h~~~--v~~v~~  154 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG----------------TSNGNLTGQARA--MNSVDF  154 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC----------------CBCBCCCCCSSC--EEEEEE
T ss_pred             ccccccccccCccccccccccccccccccccccccccccccccc----------------cccccccccccc--cccccc
Confidence            11122367889999999999999777743   566999999887                677788888866  999999


Q ss_pred             ecCCCcE-EEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--------CCC
Q 021160          160 FGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--------FPP  230 (316)
Q Consensus       160 ~~~~~~~-l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--------~~~  230 (316)
                       +|++++ +++|+.|+.|++||+++++....+..|...|++++|+|++++|++++.|+.|++||+..+.        ...
T Consensus       155 -~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  233 (311)
T d1nr0a1         155 -KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  233 (311)
T ss_dssp             -CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             -cccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence             888875 7889999999999999999999999999999999999999999999999999999988754        123


Q ss_pred             CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE-----------EeecccccccccCCCCeEEEEec
Q 021160          231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      ..+|...+..+. +++++.++++++.|+.|++||+++++.....           ...+....+.+...+|.|.+||.
T Consensus       234 ~~~h~~~V~~~~-~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         234 NVAHSGSVFGLT-WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             SCSSSSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             cccccccccccc-cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            345777776666 7889999999999999999998876433211           23334455666677788888875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-35  Score=241.82  Aligned_cols=255  Identities=10%  Similarity=0.065  Sum_probs=209.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+......+.....      .+|.+.|.+++|+|++ ++|++|+.||.|++||+......           
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~------~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~-----------  132 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR-----------  132 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E-----------
T ss_pred             CCEEEEEEccCCcccceeEEeee------cCCCCcEEEEEEcCCC-CEEEEeecccccccccccccccc-----------
Confidence            58899999987654332222111      2488999999999999 89999999999999998755410           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .... ...|...+.+++|+|++.++++ +.|+.|++|++.++                +......+|...  +.+++| 
T Consensus       133 -~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----------------~~~~~~~~~~~~--v~~l~~-  191 (337)
T d1gxra_         133 -IKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-  191 (337)
T ss_dssp             -EEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-
T ss_pred             -cccc-ccccccccccccccccccccccccccccccccccccc----------------cccccccccccc--cccccc-
Confidence             1112 2577889999999999998887 47999999999887                566777778866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  240 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  240 (316)
                      ++++.++++++.|+.+++||+++++.+..+. |...|.+++|+|++++|++++.|+.+++||++.........|...+..
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  270 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS  270 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEE
T ss_pred             cccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccccccccce
Confidence            9999999999999999999999999887764 788999999999999999999999999999998886666677777766


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecccCccee---------EEeecccccccccCCCCeEEEEec
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~  297 (316)
                      +. ++++++++++++.|+.+++|++.+++....         ..+.|++..++++..++.|.+|++
T Consensus       271 v~-~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         271 LK-FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE-ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE-ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            65 788999999999999999999887644322         257788888888888888999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8e-33  Score=225.04  Aligned_cols=251  Identities=11%  Similarity=0.088  Sum_probs=188.3

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||..+|++++|+|++ ++|++|+.||.|++||+++++              +...+...|...|++++|+|++++++++
T Consensus         9 ~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~~~~h~~~v~~v~~~~~g~~~~~~   73 (299)
T d1nr0a2           9 YGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI--------------SNRVFPDVHATMITGIKTTSKGDLFTVS   73 (299)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------------EEEEEcCCCCCcEEEEEeeccceeeccc
Confidence            4799999999999998 899999999999999999887              3444446789999999999999988888


Q ss_pred             cCCcEEEEEcCCCCCCCCccC----C--ccc---cccCC--------Ccceee-----CCcCCceeeeEEEecCCCcEEE
Q 021160          111 NDELVYLFEKNMGLGPSPLSL----S--PED---LQKRE--------EPQVYS-----GHRNSQTVKGVNFFGPNDEYVM  168 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~----~--~~~---~~~~~--------~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~  168 (316)
                      .|+.+++|+............    .  ...   .+...        .+..+.     .......+.+++| +|++++++
T Consensus        74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~  152 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL-SNDKQFVA  152 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE-CTTSCEEE
T ss_pred             ceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999999865421111000    0  000   00000        000000     0000122778888 89999999


Q ss_pred             EeccCCeEEEEeccCCeeEE-EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----CCCCCCCcccceeeee
Q 021160          169 SGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANK  243 (316)
Q Consensus       169 ~~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~  243 (316)
                      +|+.|+.+++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+..+.    ...+..|...+..+. 
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~-  231 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-  231 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            99999999999999887654 345688999999999999999999999999999987654    445667788876666 


Q ss_pred             cCCCCceeEEecCCCeEEEEEecccCcce------------eEEeecccccccccCCCCeEEEEecc
Q 021160          244 QGREDHSRITLTPDVIMHVLRLQRRQTLA------------YRERRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       244 ~~~~~~~~~s~~~d~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      +++++.++++++.|+.+++|++.+.....            .....++...+.+...|+.|.+|+++
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             ccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            78899999999999999999987653221            11234455667777788889998863

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-33  Score=229.10  Aligned_cols=220  Identities=14%  Similarity=0.170  Sum_probs=176.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec--CCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~--dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||+.+..........         +|..+|.+++|+|++ +++++++.  +..+++|++++++           
T Consensus        79 dg~i~iwd~~~~~~~~~~~~~---------~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~-----------  137 (311)
T d1nr0a1          79 HGNVRIWDTTQTTHILKTTIP---------VFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGT-----------  137 (311)
T ss_dssp             TSEEEEEESSSTTCCEEEEEE---------CSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCC-----------
T ss_pred             CceEeeeeeeccccccccccc---------cccCccccccccccc-ccccccccccccccccccccccc-----------
Confidence            689999999887654333322         378899999999999 78888765  5669999999876           


Q ss_pred             eecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                         ....+ .+|...|.+++|+|+++ +++++ .|+.|++||+++.                +....+..|...  |.++
T Consensus       138 ---~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~----------------~~~~~~~~~~~~--i~~v  195 (311)
T d1nr0a1         138 ---SNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----------------KFKSTFGEHTKF--VHSV  195 (311)
T ss_dssp             ---BCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB----------------EEEEEECCCSSC--EEEE
T ss_pred             ---ccccc-cccccccccccccccceeeeccccccccccccccccc----------------cccccccccccc--cccc
Confidence               22233 77889999999999997 46664 7999999999987                677788888866  9999


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CC
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP  229 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~  229 (316)
                      .| +|+++++++++.|+.+++||+.+++....+.       +|...|++++|+|++++|++|+.|+.|+|||+++++ +.
T Consensus       196 ~~-~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         196 RY-NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             EE-CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cc-CccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            99 9999999999999999999999988777664       578899999999999999999999999999999887 44


Q ss_pred             CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          230 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      ++..+.........+...+..+++++.||.|++||.
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         275 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             EEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            454443221111223335568999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-32  Score=225.78  Aligned_cols=246  Identities=11%  Similarity=0.141  Sum_probs=187.4

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||.++|++++|+|++ .+|++|+.||.|++||+.+++              ....+ ..|...|.+++|+|++.+++++
T Consensus        52 ~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~--------------~~~~~-~~~~~~v~~v~~~~~~~~l~~~  115 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTN--------------KVHAI-PLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--------------EEEEE-ECSCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccce--------------eEEEE-ecccccEEeeEeeccceeeeee
Confidence            4899999999999999 899999999999999999886              23333 6788999999999999988874


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCcc-----------------------------ccccCCCcceeeCCcCCceeeeEEEe
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPE-----------------------------DLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       .|+.+.+|+...............                             .............+..  .+....+ 
T Consensus       116 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-  192 (340)
T d1tbga_         116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSL-  192 (340)
T ss_dssp             ETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS--CEEEEEE-
T ss_pred             cccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccce--eEeeecc-
Confidence             799999999876532111000000                             0000011111122222  2666776 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-C--CCCCCCccc
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-F--PPLPDNAEK  237 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~~~~~  237 (316)
                      .+.+.++++++.|+.|++||+++++++..+.+|...|++++|+|++++|++++.|+.|++|++.... .  .....+...
T Consensus       193 ~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~  272 (340)
T d1tbga_         193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG  272 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             ccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCc
Confidence            7889999999999999999999999999999999999999999999999999999999999998765 2  223344455


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEe
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                      +..+. ++++++++++++.|+.|++||+.+++..         +.. .+.|++..+++++.||.|.+||
T Consensus       273 i~~~~-~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         273 ITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEE-ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEEEE-ECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            54554 7889999999999999999998765332         122 5667777777777777787775

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-32  Score=224.28  Aligned_cols=240  Identities=14%  Similarity=0.117  Sum_probs=196.7

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +|...|.+++|+|++ ++|++|+ ||.|+|||+.+.....      ++    ......+|...|.+++|+|++++|+++ 
T Consensus        49 ~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~------~~----~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          49 NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKS------PV----SQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCS------CS----EEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccc------ee----EEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            489999999999999 8999987 7999999998765211      11    111225788999999999999988875 


Q ss_pred             cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160          111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .|+.|++||+....              ......+..|...  +..++| +|++.++++++.++.+++|++.++++....
T Consensus       117 ~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         117 EASTLSIWDLAAPT--------------PRIKAELTSSAPA--CYALAI-SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             SSSEEEEEECCCC----------------EEEEEEECSSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cccccccccccccc--------------ccccccccccccc--cccccc-cccccccccccccccccccccccccccccc
Confidence            79999999987541              0234556677755  999998 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      ..|...|.+++|+|++..+++++.|+.|++||+++++......+...+..+. +.+++.++++++.|+.+++|++...+.
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~-~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG-YCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccceeecccccccceEEEE-Ecccccccceecccccccccccccccc
Confidence            9999999999999999999999999999999999877333334666676665 788889999999999999999876543


Q ss_pred             ce--------eE-EeecccccccccCCCCeEEEEeccCCC
Q 021160          271 LA--------YR-ERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       271 ~~--------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      ..        .. .+.|++..+.++..++.|.+|+...+.
T Consensus       259 ~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            21        22 678888889888899999999987765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-31  Score=223.82  Aligned_cols=261  Identities=15%  Similarity=0.230  Sum_probs=195.6

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccc-------cccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSE-------NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~-------~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~   74 (316)
                      +|.|+|||+.+.+....+.......       .....+|...|++++|+|++ ++|++|+.||.|++||...++      
T Consensus        82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~------  154 (388)
T d1erja_          82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRK------  154 (388)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTE------
T ss_pred             CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-Ccceecccccccccccccccc------
Confidence            6889999998876644433221110       11124688899999999998 899999999999999999876      


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                              ..... .+|...|.++.+++++..+++ +.++.+++||..+.                ........+..   
T Consensus       155 --------~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~---  206 (388)
T d1erja_         155 --------IVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG----------------QCSLTLSIEDG---  206 (388)
T ss_dssp             --------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------EEEEEEECSSC---
T ss_pred             --------ccccc-ccccccccccccccccccccccccceeeeeeecccc----------------ccccccccccc---
Confidence                    22222 678999999999999987766 57999999999876                44444444432   


Q ss_pred             eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      ..++.++++++.+|++++.|+.|++|+..+++....+       .+|...|.+++|+|++++|++++.|+.|++||++..
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            5556665788999999999999999999988876655       357889999999999999999999999999999765


Q ss_pred             CCC-C------------CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE----------------Eee
Q 021160          227 DFP-P------------LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------------ERR  277 (316)
Q Consensus       227 ~~~-~------------~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~----------------~~~  277 (316)
                      ... .            ...|...+..+. +++++.++++++.|+.|++||+.+++.....                .+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~s  365 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG  365 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEE-ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTC
T ss_pred             ccccccccccccceeeecccccceEEEEE-ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccC
Confidence            411 1            113444555555 7888999999999999999999876543221                134


Q ss_pred             cccccccccCCCCeEEEEecc
Q 021160          278 YNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       278 ~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      |+...+++++.||+|.+|++.
T Consensus       366 pd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         366 PEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeee
Confidence            567778888899999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-30  Score=218.35  Aligned_cols=270  Identities=13%  Similarity=0.214  Sum_probs=199.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc--
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV--   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~--   79 (316)
                      ++.+.+|+....+.......+..       +|.+.|++++|+|+| ++||+|+ |+.|++||+.+++....+......  
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~-------~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSL-------DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEE-------ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             CCcEEEeCCCCCcceeeeeEeeC-------CCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            35567788665543322222211       389999999999999 8999986 899999999988754433211110  


Q ss_pred             --eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160           80 --DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  156 (316)
Q Consensus        80 --~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (316)
                        ... .......|...|.+++|+|++++|+++ .|+.|++||...+                +....+.+|...  |.+
T Consensus       108 ~~~~~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~----------------~~~~~~~~h~~~--v~~  168 (388)
T d1erja_         108 DPENL-NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----------------KIVMILQGHEQD--IYS  168 (388)
T ss_dssp             ------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEE
T ss_pred             ccccc-ccccccCCCCCEEEEEECCCCCcceeccccccccccccccc----------------cccccccccccc--ccc
Confidence              000 111124678889999999999988885 7999999999887                677778888866  999


Q ss_pred             EEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-C-------
Q 021160          157 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-F-------  228 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~-------  228 (316)
                      +++ ++++..+++++.++.+++||..+.........+...+..+.+.+++++|++++.|+.|++|+...+. .       
T Consensus       169 ~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  247 (388)
T d1erja_         169 LDY-FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN  247 (388)
T ss_dssp             EEE-CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             ccc-ccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc
Confidence            999 8999999999999999999999998887777665555444445578899999999999999998765 1       


Q ss_pred             CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc---------------------ee-EEeeccccccccc
Q 021160          229 PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------------------AY-RERRYNAADFESD  286 (316)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~---------------------~~-~~~~~~~~~~~~~  286 (316)
                      ....+|...+..+. +++++.++++++.|+.+++|++......                     +. ..+.+++..+.++
T Consensus       248 ~~~~~h~~~v~~l~-~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg  326 (388)
T d1erja_         248 ESGTGHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG  326 (388)
T ss_dssp             ---CCCSSCEEEEE-ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred             ccccCCCCCEEEEE-ECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEE
Confidence            22335667776665 7888999999999999999998754221                     11 2577788889999


Q ss_pred             CCCCeEEEEeccCCC
Q 021160          287 EEEGETYLLGFSDSD  301 (316)
Q Consensus       287 ~~~~~v~~~~~~~~~  301 (316)
                      ..+|.|++||...++
T Consensus       327 ~~dg~i~vwd~~~~~  341 (388)
T d1erja_         327 SKDRGVLFWDKKSGN  341 (388)
T ss_dssp             ETTSEEEEEETTTCC
T ss_pred             eCCCEEEEEECCCCc
Confidence            999999999987664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-31  Score=221.59  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=176.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+......+.         +|.++|++++|+|++ ++|++|+.|+.|++||+.++...           
T Consensus        28 ~~~i~iw~~~~~~~~~~~~l~---------gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~~-----------   86 (371)
T d1k8kc_          28 NHEVHIYEKSGNKWVQVHELK---------EHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWK-----------   86 (371)
T ss_dssp             SSEEEEEEEETTEEEEEEEEE---------CCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEE-----------
T ss_pred             CCEEEEEECCCCCEEEEEEec---------CCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecccccc-----------
Confidence            578999999876644333332         589999999999998 89999999999999999876521           


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                        ......+|...|.+++|+|+++.|+++ .|+.+++|++.....            ..........|...  |.+++| 
T Consensus        87 --~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~------------~~~~~~~~~~~~~~--v~~v~~-  149 (371)
T d1k8kc_          87 --PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND------------WWVCKHIKKPIRST--VLSLDW-  149 (371)
T ss_dssp             --EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT------------EEEEEEECTTCCSC--EEEEEE-
T ss_pred             --cccccccccccccccccccccccceeecccCcceeeeeecccc------------cccccccccccccc--cccccc-
Confidence              111225788899999999999988774 799999999876510            00011223445544  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccC------------------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKG------------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd  222 (316)
                      +|++.+|++|+.|+.+++|+...                  ++.+.....|...|.+++|+|++++|++++.|+.|++||
T Consensus       150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEe
Confidence            99999999999999999999753                  234566678889999999999999999999999999999


Q ss_pred             CCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          223 PMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       223 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +..+. +..+..|..++..+. +++++.+++++. |+.+++|....
T Consensus       230 ~~~~~~~~~~~~~~~~v~s~~-fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         230 ADKKMAVATLASETLPLLAVT-FITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             GGGTTEEEEEECSSCCEEEEE-EEETTEEEEEET-TSSCEEEEEET
T ss_pred             eecccceeeeecccccceeee-ecCCCCEEEEEc-CCceEEEEeeC
Confidence            98876 666777777776666 677887777655 67667776544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-30  Score=212.06  Aligned_cols=248  Identities=14%  Similarity=0.202  Sum_probs=209.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+.           +|...|.+++|+|++ .+++++..++.+.+|+....+             
T Consensus        38 Dg~i~iWd~~~~~~~~~~~-----------~h~~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------   92 (317)
T d1vyhc1          38 DATIKVWDYETGDFERTLK-----------GHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFE-------------   92 (317)
T ss_dssp             SSCEEEEETTTCCCCEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSC-------------
T ss_pred             CCeEEEEECCCCCEEEEEe-----------CCCCcEEEEeeeccc-ccccccccccccccccccccc-------------
Confidence            6899999999887765553           378899999999999 899999999999999988665             


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  160 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (316)
                       . ......|...+.++.|+|++..+++ +.|+.+++||++++                .....+.+|...  +.+++| 
T Consensus        93 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-  151 (317)
T d1vyhc1          93 -C-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----------------YCVKTFTGHREW--VRMVRP-  151 (317)
T ss_dssp             -E-EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-
T ss_pred             -c-ccccccccccceeeeccCCCceEEeeccCcceeEeecccc----------------eeeeEEccCCCc--ceeeec-
Confidence             1 2222678889999999999998877 57999999999988                677888888866  999999 


Q ss_pred             cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC--------------------CeEEEEeCCCcEEE
Q 021160          161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--------------------PMFATCGIEKTVKL  220 (316)
Q Consensus       161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~--------------------~~l~s~~~d~~i~i  220 (316)
                      ++++.+|++++.|+.|++|++.+++....+.+|...+.+++|+|+.                    ..+++++.|+.|++
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            9999999999999999999999999999999999999999998864                    36889999999999


Q ss_pred             ecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCccee----------EEeecccccccccCCC
Q 021160          221 WAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEE  289 (316)
Q Consensus       221 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~~~  289 (316)
                      |++++++ +..+.+|...+..+. ++++++++++++.|+.|++||+.+++....          ..+.|++..++++..|
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         232 WDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEE-ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             EECCCCcEEEEEeCCCCCEEEEE-ECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9999887 666777888776666 788899999999999999999987643321          1567777777777788


Q ss_pred             CeEEEEe
Q 021160          290 GETYLLG  296 (316)
Q Consensus       290 ~~v~~~~  296 (316)
                      |.|.+||
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            8888775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=7.9e-31  Score=219.91  Aligned_cols=223  Identities=10%  Similarity=0.137  Sum_probs=173.5

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ..+|+|++|+|++ ++||+|+.|+.|++||+.+++..            +... ..+|..+|.+++|+|++++|+++ .|
T Consensus         7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~------------~~~~-l~gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_           7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWV------------QVHE-LKEHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEE------------EEEE-EECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCEE------------EEEE-ecCCCCCEEEEEECCCCCEEEEEECC
Confidence            5689999999999 89999999999999999876521            2222 27899999999999999988885 79


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee----EE
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VR  188 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~----~~  188 (316)
                      ++|++||+..+.              ......+.+|...  +.+++| +|++++|++++.|+.+++|++.....    ..
T Consensus        73 ~~i~vWd~~~~~--------------~~~~~~~~~~~~~--v~~i~~-~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          73 RNAYVWTLKGRT--------------WKPTLVILRINRA--ARCVRW-APNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             SCEEEEEEETTE--------------EEEEEECCCCSSC--EEEEEE-CTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeecccc--------------ccccccccccccc--cccccc-ccccccceeecccCcceeeeeecccccccccc
Confidence            999999998651              0123344556655  999999 99999999999999999999876543    23


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC-------------------CCCCCCcccceeeeecCCCCc
Q 021160          189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------------------PPLPDNAEKIMKANKQGREDH  249 (316)
Q Consensus       189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  249 (316)
                      ....|...|.+++|+|++++|++|+.|+.|++|+......                   .....|...+..+. ++++++
T Consensus       136 ~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~  214 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSANGS  214 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE-ECSSSS
T ss_pred             cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE-eecccc
Confidence            3456888999999999999999999999999999865431                   11224445555554 788899


Q ss_pred             eeEEecCCCeEEEEEecccCcc---------eeE-EeecccccccccCC
Q 021160          250 SRITLTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEE  288 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~  288 (316)
                      ++++++.|+.+++||+.++...         +.. .+.++...++++.+
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcC
Confidence            9999999999999998765332         222 56777777766543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=2.7e-30  Score=213.01  Aligned_cols=231  Identities=13%  Similarity=0.170  Sum_probs=185.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC----CCCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI----SSDT   77 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~----~~~~   77 (316)
                      +|.|+|||+.+.+....+..           |..+|.+++|+|++ .++++|+.|+.+++|+..........    ....
T Consensus        76 Dg~v~iWd~~~~~~~~~~~~-----------~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  143 (340)
T d1tbga_          76 DGKLIIWDSYTTNKVHAIPL-----------RSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHT  143 (340)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-----------SCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS
T ss_pred             CCceeeeecccceeEEEEec-----------ccccEEeeEeeccc-eeeeeecccceeecccccccccccccceeccccc
Confidence            68999999988776555543           68899999999999 89999999999999998755422110    0000


Q ss_pred             Cceec--------------------------ccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCcc
Q 021160           78 PVDTF--------------------------CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLS  130 (316)
Q Consensus        78 ~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~  130 (316)
                      .....                          ........+...+....+.+.+.+++++ .|+.|++||++++       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-------  216 (340)
T d1tbga_         144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-------  216 (340)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT-------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCC-------
Confidence            00000                          0000112345567888888888877775 7999999999888       


Q ss_pred             CCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee--cCccceEEEEEcCCCCe
Q 021160          131 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPM  208 (316)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~  208 (316)
                               +....+.+|...  |.+++| +|++.+|++|+.|+.|++|++...+.+..+.  .+...|.+++|+|++++
T Consensus       217 ---------~~~~~~~~h~~~--i~~v~~-~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         217 ---------MCRQTFTGHESD--INAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             ---------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             ---------cEEEEEeCCCCC--eEEEEE-CCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence                     678888888876  999999 9999999999999999999999988877664  45678999999999999


Q ss_pred             EEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          209 FATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       209 l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      |++|+.||.|++||+.+++ +..+.+|..++..+. +++++.++++++.|+.|++||
T Consensus       285 l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~-~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG-VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999998877 777888988887776 788999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.6e-30  Score=211.35  Aligned_cols=240  Identities=12%  Similarity=0.118  Sum_probs=179.8

Q ss_pred             CC-ccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           32 MN-SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        32 gh-~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      || ...|++++|+|. +..+|++|+.||+|++||+..++....      +. .........|..+|.+++|+++++.+++
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~------~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS------VE-VNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE------EE-EEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee------ee-cccccccccccCcEEEEEECCCCCccce
Confidence            35 468999999984 227999999999999999986652211      00 0111122457889999999999997665


Q ss_pred             -e--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcE-EEEeccCCeEEEEeccCCe
Q 021160          110 -Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGK  185 (316)
Q Consensus       110 -~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~~wd~~~~~  185 (316)
                       +  .++.+++|+.+++                +.+..+.+|...  |.+++| +|++.+ +++++.|+.+++|+....+
T Consensus       133 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSG----------------NSLGEVSGHSQR--INACHL-KQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             EECCSSCSEEEEETTTC----------------CEEEECCSCSSC--EEEEEE-CSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             eeccccceEEEEeeccc----------------ccceeeeecccc--cccccc-cccccceEEEeecccccccccccccc
Confidence             3  3778999999887                677888888866  999999 787765 7789999999999999888


Q ss_pred             eEEEee---cCccceEEEEEcCC-CCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeee--cCCCCceeEEecCCC
Q 021160          186 LVRLMV---GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANK--QGREDHSRITLTPDV  258 (316)
Q Consensus       186 ~~~~~~---~~~~~v~~~~~~p~-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~  258 (316)
                      ....+.   .|...|.+++|+|+ +.+|++++.|+.|++||+++++ +..+.+|...+....+  ..+++.++++++.|+
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            766654   46678999999997 5789999999999999999887 6677777766643331  125788999999999


Q ss_pred             eEEEEEecccCcceeE------------Eee-cccccccccCCCCeEEEEec
Q 021160          259 IMHVLRLQRRQTLAYR------------ERR-YNAADFESDEEEGETYLLGF  297 (316)
Q Consensus       259 ~~~~w~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~v~~~~~  297 (316)
                      .+++||+++++.....            ... +....+.+.+.+|.|.+||+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999999876443221            111 12234566677788888874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.9e-30  Score=207.90  Aligned_cols=236  Identities=16%  Similarity=0.257  Sum_probs=194.8

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||.++|++++|+|++ ++|++|+.||+|++||+.+++              ....+ .+|...|.+++|+|++.+++++
T Consensus        14 ~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~--------------~~~~~-~~h~~~V~~~~~~~~~~~~~~~   77 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--------------FERTL-KGHTDSVQDISFDHSGKLLASC   77 (317)
T ss_dssp             ECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC--------------CCEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCC--------------EEEEE-eCCCCcEEEEeeeccccccccc
Confidence            3699999999999998 899999999999999999886              33333 7889999999999999988884


Q ss_pred             -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160          111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~  189 (316)
                       .++.+.+|+....                .....+.+|...  +.++.+ ++++..+++++.|+.+++||+++++.+..
T Consensus        78 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  138 (317)
T d1vyhc1          78 SADMTIKLWDFQGF----------------ECIRTMHGHDHN--VSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKT  138 (317)
T ss_dssp             ETTSCCCEEETTSS----------------CEEECCCCCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccccc----------------cccccccccccc--ceeeec-cCCCceEEeeccCcceeEeecccceeeeE
Confidence             7899999998776                455666677755  889998 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeec-------------------CCCCc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ-------------------GREDH  249 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~-------------------~~~~~  249 (316)
                      +.+|...+.+++|+|++++|++++.|+.|++|++.... ...+..+...+....+.                   ...+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (317)
T d1vyhc1         139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP  218 (317)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred             EccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCc
Confidence            99999999999999999999999999999999998876 44444455444333311                   11345


Q ss_pred             eeEEecCCCeEEEEEecccCcc---------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160          250 SRITLTPDVIMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       250 ~~~s~~~d~~~~~w~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .+++++.|+.+++|++.+++..         +. ..+.|+...+.++..+|.|.+|++..+.
T Consensus       219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             eeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence            7889999999999998875322         11 2677888889989999999999987664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=208.95  Aligned_cols=242  Identities=15%  Similarity=0.211  Sum_probs=171.4

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  110 (316)
                      ||.+.|.+ +++++| ++|++|+.||+|+|||+.+++              +...+ .+|...|.+++|+|+  +|++ +
T Consensus        14 GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~~--------------~~~~~-~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTGK--------------CLRTL-VGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             CSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTTCC--------------EEEEC-CCCSSCEEEEEEETT--EEEEEE
T ss_pred             CcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCCCC--------------EEEEE-eCCCCCEEEEEeCCC--ccccce
Confidence            58888865 355567 899999999999999999887              33333 789999999999875  6666 5


Q ss_pred             cCCcEEEEEcCCCCCC------------------------CC--------------------------------------
Q 021160          111 NDELVYLFEKNMGLGP------------------------SP--------------------------------------  128 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~------------------------~~--------------------------------------  128 (316)
                      .|+.+++|+.......                        ..                                      
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            7999999998754300                        00                                      


Q ss_pred             --ccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160          129 --LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  206 (316)
Q Consensus       129 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~  206 (316)
                        ..+..++.........+.+|...  +..  + ++++.++++++.||.|++||++.++++..+.+|...+.++++++  
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~--~~~--~-~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--  227 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNR--VYS--L-QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--  227 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSC--EEE--E-EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--
T ss_pred             CCCeEEEeecccceeeEEEcCcccc--ccc--c-cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--
Confidence              00011112222223333444422  333  3 55789999999999999999999999999999999998888765  


Q ss_pred             CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc--------------
Q 021160          207 PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL--------------  271 (316)
Q Consensus       207 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~--------------  271 (316)
                      ++|++++.|+.|++||+...+ ...+..+............+++++++++.||.|++||+++++..              
T Consensus       228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~  307 (342)
T d2ovrb2         228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV  307 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred             CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCC
Confidence            589999999999999998776 33333322222222333446679999999999999999876432              


Q ss_pred             eeE-EeecccccccccCCCC----eEEEEeccC
Q 021160          272 AYR-ERRYNAADFESDEEEG----ETYLLGFSD  299 (316)
Q Consensus       272 ~~~-~~~~~~~~~~~~~~~~----~v~~~~~~~  299 (316)
                      +.. .+.|++..++++..+|    ++++|||.-
T Consensus       308 v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            112 5677777777776666    488888853

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-29  Score=208.71  Aligned_cols=263  Identities=12%  Similarity=0.157  Sum_probs=185.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+.           +|.++|++++|+|+  .+|++|+.|+.|++|++...+...          
T Consensus        32 Dg~i~vWd~~~~~~~~~l~-----------~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~----------   88 (355)
T d1nexb2          32 DKMIRVYDSINKKFLLQLS-----------GHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTH----------   88 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEE-----------CCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEE----------
T ss_pred             CCeEEEEECCCCcEEEEEE-----------CCCCCEEEEEEcCC--CEEEEEeccccccccccccccccc----------
Confidence            6899999998876655543           48899999999985  489999999999999998776321          


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCC--------------------------------
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSP--------------------------------  128 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~--------------------------------  128 (316)
                         ......+........+.+++.++++ +.|+.|++||+........                                
T Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  165 (355)
T d1nexb2          89 ---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR  165 (355)
T ss_dssp             ---EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE
T ss_pred             ---ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc
Confidence               1111233445566777888877776 4799999999876431000                                


Q ss_pred             ---------------ccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          129 ---------------LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       129 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                                     ..+..+++.+.+....+.++...  +.++.| ++++.++++++.|+.|++||+++++.+..+.+|
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR--IYSTIY-DHERKRCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccc--cccccc-cccceeeecccccceEEeeeccccccccccccc
Confidence                           01111223333334444555544  788888 899999999999999999999999999999999


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcce-
Q 021160          194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA-  272 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~-  272 (316)
                      ...|.+++|++  ++|++++.||.|++||++.... .+..|...+.....+++++.+++++ .|+.|++||+++++... 
T Consensus       243 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         243 TALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             SSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE-EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             ccccccccccc--ceeeeeecccccccccccccce-ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            99999999975  5899999999999999987652 2334556666666666777766665 58999999998764331 


Q ss_pred             ---------eE-EeecccccccccCCCCeE--EEEecc
Q 021160          273 ---------YR-ERRYNAADFESDEEEGET--YLLGFS  298 (316)
Q Consensus       273 ---------~~-~~~~~~~~~~~~~~~~~v--~~~~~~  298 (316)
                               .. .+.++. .+.+...+|++  .+|||+
T Consensus       319 ~~~~~~~~V~~v~~~~~~-~~~~~s~dg~~~l~~~dfs  355 (355)
T d1nexb2         319 NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDFS  355 (355)
T ss_dssp             CTTTTCSEEEEEEEETTE-EEEEEESSSCEEEEEEECC
T ss_pred             EecCCCCCEEEEEEcCCe-EEEEEECCCcEEEEEEeCC
Confidence                     11 345543 35555666664  445553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.3e-30  Score=207.38  Aligned_cols=234  Identities=10%  Similarity=0.058  Sum_probs=166.3

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC----CC
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS----SD   76 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~----~~   76 (316)
                      .+|.|++||+.+.+..+.+.          .+|...|++++|+|++ . +++++.|+.+++|+...........    ..
T Consensus        32 ~Dg~v~vWd~~~~~~~~~~~----------~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~   99 (299)
T d1nr0a2          32 AEGHINSWDISTGISNRVFP----------DVHATMITGIKTTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLS   99 (299)
T ss_dssp             TTSCEEEEETTTCCEEECSS----------CSCSSCEEEEEECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred             CCCeEEEEECCCCcEEEEEc----------CCCCCcEEEEEeeccc-e-eecccceeeEEEeccCCcccccccccccccc
Confidence            36899999998766543321          1478899999999988 4 5666789999999987543221110    00


Q ss_pred             CCceeccc--------------------c-cccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCcc
Q 021160           77 TPVDTFCP--------------------R-HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPE  134 (316)
Q Consensus        77 ~~~~~~~~--------------------~-~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  134 (316)
                      ..+.....                    . .........+.+++|+|++++++++ .|+.|++||++++           
T Consensus       100 ~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~-----------  168 (299)
T d1nr0a2         100 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA-----------  168 (299)
T ss_dssp             SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT-----------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            11100000                    0 0000123457788899998877774 7999999998765           


Q ss_pred             ccccCCCcc-eeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE---EEeecCccceEEEEEcCCCCeEE
Q 021160          135 DLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---RLMVGDRHVVNQLEPHPHIPMFA  210 (316)
Q Consensus       135 ~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~  210 (316)
                           .... ....|...  |.+++| +|++.+|++++.++.|++||+.++...   ..+.+|...|++++|+|++++|+
T Consensus       169 -----~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         169 -----SVSEVKTIVHPAE--ITSVAF-SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             -----EEEEEEEEECSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             -----ccccccccccccc--cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccceE
Confidence                 2222 33456655  999999 999999999999999999999877654   34567889999999999999999


Q ss_pred             EEeCCCcEEEecCCCCCC---CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160          211 TCGIEKTVKLWAPMPTDF---PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       211 s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +|+.|+.|++||++....   .....|....+....+ +++.++++++.|+.|++||+.
T Consensus       241 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999999999987652   2223344444444433 456789999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.2e-29  Score=205.01  Aligned_cols=226  Identities=13%  Similarity=0.153  Sum_probs=169.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe--cCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|+|||++..+....+......   ....|.++|.+++|++++ .++++++  .++.+++|+.++++           
T Consensus        86 Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~-----------  150 (325)
T d1pgua1          86 SGKVIVWGWTFDKESNSVEVNVKS---EFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGN-----------  150 (325)
T ss_dssp             TSEEEEEEEEEEGGGTEEEEEEEE---EEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCC-----------
T ss_pred             CCCEEEeeecCCcceeeeeccccc---ccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccc-----------
Confidence            689999999876654443322111   112478899999999999 6666654  47789999998876           


Q ss_pred             eecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCccee---eCCcCCcee
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SGHRNSQTV  154 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i  154 (316)
                         +...+ .+|...|.+++|+|++. ++++ +.|+.+++||....                +....+   ..|..  .|
T Consensus       151 ---~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~----------------~~~~~~~~~~~~~~--~v  208 (325)
T d1pgua1         151 ---SLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----------------KFSASDRTHHKQGS--FV  208 (325)
T ss_dssp             ---EEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----------------EEEEEECSSSCTTC--CE
T ss_pred             ---cceee-eecccccccccccccccceEEEeeccccccccccccc----------------ccceecccccCCCC--cc
Confidence               33333 67899999999999987 4555 57999999998765                333333   33443  49


Q ss_pred             eeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc---CCCCeEEEEeCCCcEEEecCCCCC-CC
Q 021160          155 KGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH---PHIPMFATCGIEKTVKLWAPMPTD-FP  229 (316)
Q Consensus       155 ~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~---p~~~~l~s~~~d~~i~iwd~~~~~-~~  229 (316)
                      .+++| +|+ +.++++++.|+.|++||+++++.+..+.+|...+..+.|+   |++++|++++.|+.|+|||+++++ +.
T Consensus       209 ~~v~~-~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         209 RDVEF-SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEEEE-CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEeee-ccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            99999 775 6899999999999999999999999999888777666665   688999999999999999999876 33


Q ss_pred             CCC--CCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          230 PLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       230 ~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                      .+.  .+........+....+..+++++.|+.|++||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            333  233333333333334558899999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-27  Score=194.32  Aligned_cols=233  Identities=15%  Similarity=0.203  Sum_probs=167.0

Q ss_pred             CCCccce-EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           31 PMNSIRL-NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        31 ~gh~~~v-~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      .||...| +|++|+  + ++|++|+.||+|++||+.+++              +...+ .+|..+|.+++|+|++ +|++
T Consensus         9 ~GH~~~vitc~~~~--~-~~l~tgs~Dg~i~vWd~~~~~--------------~~~~l-~~H~~~V~~l~~s~~~-~l~s   69 (355)
T d1nexb2           9 RGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKK--------------FLLQL-SGHDGGVWALKYAHGG-ILVS   69 (355)
T ss_dssp             ECCSSSCEEEEEEE--T-TEEEEEETTTEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEEETTT-EEEE
T ss_pred             CCcCCCcEEEEEEC--C-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-ECCCCCEEEEEEcCCC-EEEE
Confidence            3788875 666664  5 799999999999999999887              33333 7899999999999865 4555


Q ss_pred             -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE-----------------------------
Q 021160          110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-----------------------------  159 (316)
Q Consensus       110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------------  159 (316)
                       +.|++|++|+.....                ..................+                             
T Consensus        70 ~s~D~~i~iw~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          70 GSTDRTVRVWDIKKGC----------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             EETTCCEEEEETTTTE----------------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             Eecccccccccccccc----------------cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence             689999999998762                1111111111000111111                             


Q ss_pred             ---------------------------------ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160          160 ---------------------------------FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  206 (316)
Q Consensus       160 ---------------------------------~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~  206 (316)
                                                       ..+++.+++++..|+.+++||+.+++.+....++...+.++.|+|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  213 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence                                             13345566666666667777776666666777777888999999999


Q ss_pred             CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE---------Ee
Q 021160          207 PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR---------ER  276 (316)
Q Consensus       207 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~---------~~  276 (316)
                      +.+++++.|+.|++||++++. +..+.+|...+..+. +  +++++++++.|+.|++||+++.......         .+
T Consensus       214 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~-~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  290 (355)
T d1nexb2         214 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR-L--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF  290 (355)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE-E--CSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEE
T ss_pred             eeeecccccceEEeeeccccccccccccccccccccc-c--ccceeeeeecccccccccccccceecccccCCceEEEEE
Confidence            999999999999999999887 666777887775554 2  3579999999999999999876433221         34


Q ss_pred             ecccccccccCCCCeEEEEeccCCCC
Q 021160          277 RYNAADFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       277 ~~~~~~~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .++...+.++ .++.|.+||+..++.
T Consensus       291 ~~~~~~l~~g-~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         291 YVSDNILVSG-SENQFNIYNLRSGKL  315 (355)
T ss_dssp             EECSSEEEEE-ETTEEEEEETTTCCB
T ss_pred             cCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            5555555554 478899999987763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.7e-27  Score=199.79  Aligned_cols=236  Identities=11%  Similarity=0.115  Sum_probs=161.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC----cEEEEEecCCcEEEEeCcCCcccCC---CC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP----NYFAVGGSDEYARVYDIRKCHWYSP---IS   74 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~----~~l~~g~~dg~v~~wd~~~~~~~~~---~~   74 (316)
                      +|.|++|++............... ......++..+..++|.++..    .++++++.||.+++|++........   ..
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCcEEEEEccCCCceeeeeccccc-eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            689999999876654433322211 111123566788888877532    6889999999999999864321100   00


Q ss_pred             CCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160           75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  153 (316)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
                      ................+...+.+++|+|++ +|+++ .|++|++||+.++.          .+...+....+.+|...  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~----------~~~~~~~~~~l~~h~~~--  233 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----------PLYNFESQHSMINNSNS--  233 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----------EEEEEECCC---CCCCC--
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc----------cccccccccccccccce--
Confidence            000001111111223456678999999998 66664 79999999998761          11111223445677766  


Q ss_pred             eeeEEEecCCCcEEEEeccCC---eEEEEeccCCeeEEEee-------------cCccceEEEEEcCCCCeEEEEeCCCc
Q 021160          154 VKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMV-------------GDRHVVNQLEPHPHIPMFATCGIEKT  217 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~l~s~~~d~~  217 (316)
                      |.+++| +|++++|++|+.|+   .|++||+++++++..+.             +|...|++++|+|++++|++++.|++
T Consensus       234 V~~l~~-spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         234 IRSVKF-SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             EEEEEE-CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             EEEccc-ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            999999 99999999999887   49999999998877664             79999999999999999999999999


Q ss_pred             EEEecCCCCC-CCCCCCCccccee---eeecCCCCceeE
Q 021160          218 VKLWAPMPTD-FPPLPDNAEKIMK---ANKQGREDHSRI  252 (316)
Q Consensus       218 i~iwd~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~  252 (316)
                      |++||+++++ +.++.+|...+..   ...+.+++..++
T Consensus       313 v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             EEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            9999999887 7778888877632   122445555544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-28  Score=195.54  Aligned_cols=205  Identities=12%  Similarity=0.142  Sum_probs=143.2

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  110 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  110 (316)
                      .||..+|++++|+|     |++|+.||.|++||+.++.                    .+|...|.++++++++.++..+
T Consensus        10 ~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~--------------------~~h~~~V~~~~~~~~~~~~s~s   64 (287)
T d1pgua2          10 SGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH--------------------QDHSNLIVSLDNSKAQEYSSIS   64 (287)
T ss_dssp             CCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE--------------------CCCCSCEEEEECCSTTCCEEEE
T ss_pred             CCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC--------------------CCCCCCEEEEEecCCCeEEEEe
Confidence            47999999999986     8999999999999988654                    3445555555555444333334


Q ss_pred             cCCcEEEEEcC----------------------------------CCCC-------CCC-----------------ccCC
Q 021160          111 NDELVYLFEKN----------------------------------MGLG-------PSP-----------------LSLS  132 (316)
Q Consensus       111 ~d~~i~iwd~~----------------------------------~~~~-------~~~-----------------~~~~  132 (316)
                      .|+++++|++.                                  .+..       ...                 ..+.
T Consensus        65 ~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~  144 (287)
T d1pgua2          65 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  144 (287)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             eccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceee
Confidence            45555555443                                  2210       000                 0000


Q ss_pred             ccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-eecCccceEEEEEcCC-----
Q 021160          133 PEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPH-----  205 (316)
Q Consensus       133 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~p~-----  205 (316)
                      .+++........+. .+..  .+++++| +|++.+|++|+.||.|++||+.+++.... +.+|...|.+++|+|.     
T Consensus       145 ~~~~~~~~~~~~~~~~~~~--~v~~~~~-s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  221 (287)
T d1pgua2         145 VFKLSDLEVSFDLKTPLRA--KPSYISI-SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN  221 (287)
T ss_dssp             EEETTEEEEEEECSSCCSS--CEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred             eeeccccceeeeeeeccCC--ceeEEEe-ccCccccccccccccccceeecccccccccccccccccceeeecccccccc
Confidence            11111111111111 2333  3899999 99999999999999999999999887654 5789999999999875     


Q ss_pred             -----CCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160          206 -----IPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  265 (316)
Q Consensus       206 -----~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~  265 (316)
                           +.+|++|+.|+.|++||++...  +..+.+|...+..+. |.+++ .+++++.|+.+++|++
T Consensus       222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~-~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE-EEETT-EEEEEETTSCEEEEEE
T ss_pred             cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE-ECCCC-EEEEEECCCeEEEEEE
Confidence                 4579999999999999987643  555678888887776 55554 6889999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8e-26  Score=190.64  Aligned_cols=250  Identities=10%  Similarity=0.022  Sum_probs=162.2

Q ss_pred             CceeeEEEEeeCCCc----ceEEEeccccccccCCCCccce------EEEEECCCCCcEEEEEecCCcEEEEeCcCCccc
Q 021160            1 MVLFNMLFDLRSDSA----TRLFYCSSFSENSKQPMNSIRL------NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY   70 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~----~~~~~~~~~~~~~~~~gh~~~v------~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~   70 (316)
                      .+|.|+|||..+.+.    .......         .|...+      ..+..+.....++++++.||.|++|++......
T Consensus        32 ~D~~iriWd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~  102 (393)
T d1sq9a_          32 GDGYLKVWDNKLLDNENPKDKSYSHF---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET  102 (393)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGEEEEE---------CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             CCCeEEEEECCCCCCCcccceeEeee---------eccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence            378999999876542    1122211         123232      233333333257889999999999998755421


Q ss_pred             CCCCCCCCceecc-cccccCCCcccEEEEEEccCC-----CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCC---
Q 021160           71 SPISSDTPVDTFC-PRHLIGKNNIHITGLAYSNTS-----ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKRE---  140 (316)
Q Consensus        71 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-----~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---  140 (316)
                      ..      ..... .......+...+..++|.+++     .++++ +.|+.+++|++...... .............   
T Consensus       103 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~  175 (393)
T d1sq9a_         103 KK------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE-SNSLTLNWSPTLELQG  175 (393)
T ss_dssp             CC------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH-HHHTTTCCCCEEEEEE
T ss_pred             ee------eeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc-cceeeeeeccceeccc
Confidence            11      00000 000112345567788887764     35555 57999999998643100 0000000000000   


Q ss_pred             CcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe------ecCccceEEEEEcCCCCeEEEEeC
Q 021160          141 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM------VGDRHVVNQLEPHPHIPMFATCGI  214 (316)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~s~~~  214 (316)
                      .......+.  ..+.+++| +|++ +|++|+.|+.|++||+.+++++..+      .+|...|.+++|+|++++|++|+.
T Consensus       176 ~~~~~~~~~--~~~~~v~~-s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~  251 (393)
T d1sq9a_         176 TVESPMTPS--QFATSVDI-SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD  251 (393)
T ss_dssp             EECCSSSSC--CCCCEEEE-CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             ceecccCCC--CcEEEEEE-CCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecC
Confidence            001111222  33889999 8887 8899999999999999999887654      468899999999999999999998


Q ss_pred             CCc---EEEecCCCCC-C-------------CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          215 EKT---VKLWAPMPTD-F-------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       215 d~~---i~iwd~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      |++   |++||++.+. +             ..+.+|...|..++ ++++++++++++.|++|++||+.+++..
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~-fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeec-cCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            874   8999998754 2             23347888887776 8899999999999999999999887543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.2e-25  Score=177.41  Aligned_cols=235  Identities=17%  Similarity=0.257  Sum_probs=166.6

Q ss_pred             CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  110 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  110 (316)
                      +|...|+|++|  ++ ++||+|+.||+|+|||+.+++              +...+ .+|...|++++|  ++++|+++ 
T Consensus        13 ~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~~--------------~~~~l-~~H~~~V~~v~~--~~~~l~s~s   72 (293)
T d1p22a2          13 ETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLE--------------CKRIL-TGHTGSVLCLQY--DERVIITGS   72 (293)
T ss_dssp             SSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCC--------------EEEEE-CCCSSCEEEEEC--CSSEEEEEE
T ss_pred             CCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-ecCCCCEeeeec--ccceeeccc
Confidence            47889999876  56 899999999999999999887              33334 789999999987  56778874 


Q ss_pred             cCCcEEEEEcCCCCCCCC------------------------ccCCccccccCC---CcceeeCCcCCceeeeEEEecCC
Q 021160          111 NDELVYLFEKNMGLGPSP------------------------LSLSPEDLQKRE---EPQVYSGHRNSQTVKGVNFFGPN  163 (316)
Q Consensus       111 ~d~~i~iwd~~~~~~~~~------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~  163 (316)
                      .|+.|++|++..+.....                        .....++.....   ....+..|...  +..+.+   .
T Consensus        73 ~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~---~  147 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDF---D  147 (293)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC--EEEEEE---E
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc--ccccee---c
Confidence            799999999987641000                        001111111111   11122334433  555554   4


Q ss_pred             CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeee
Q 021160          164 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN  242 (316)
Q Consensus       164 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  242 (316)
                      ...+++++.|+.+++||+.+++.+..+.++...+..+.++  +..+++++.|+.|++||++... +.....+...+..  
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--  223 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--  223 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--
T ss_pred             ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--
Confidence            5678899999999999999999999999999888888775  4589999999999999999877 4445555554432  


Q ss_pred             ecCCCCceeEEecCCCeEEEEEecccCcc-----------------eeEEeecccccccccCCCCeEEEEe
Q 021160          243 KQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------AYRERRYNAADFESDEEEGETYLLG  296 (316)
Q Consensus       243 ~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~  296 (316)
                       ...++.++++++.|+.+++|++......                 .......++..+.+++.||.|.+||
T Consensus       224 -~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 -IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             -ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence             4456789999999999999998643211                 0011223455677777788888876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-25  Score=177.14  Aligned_cols=221  Identities=13%  Similarity=0.275  Sum_probs=164.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc--
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV--   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~--   79 (316)
                      +|.|+|||+.+.++...+.           +|...|++++|+  + ++|++|+.|+.|++|++..+............  
T Consensus        34 Dg~i~vWd~~~~~~~~~l~-----------~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~   99 (293)
T d1p22a2          34 DNTIKIWDKNTLECKRILT-----------GHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL   99 (293)
T ss_dssp             SSCEEEEESSSCCEEEEEC-----------CCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred             CCeEEEEECCCCcEEEEEe-----------cCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccc
Confidence            6899999998887765553           488999999985  4 79999999999999999877643221110000  


Q ss_pred             ------------------eec--------ccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCC
Q 021160           80 ------------------DTF--------CPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLS  132 (316)
Q Consensus        80 ------------------~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~  132 (316)
                                        ..+        ........|...+..+.+.+.  .+++ +.|+.|++||++++         
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~d~~i~~~d~~~~---------  168 (293)
T d1p22a2         100 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTC---------  168 (293)
T ss_dssp             EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEETTTC---------
T ss_pred             cccccccceeecccccceeEeeccccccccccccccccccccccceeccc--ccccccCCCceeeecCCCC---------
Confidence                              000        001112345666766666543  3444 67999999999887         


Q ss_pred             ccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE
Q 021160          133 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC  212 (316)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~  212 (316)
                             +.+..+.++...  +..+.+   ++.++++++.||.|++||+++.+.+..+.+|...+..  +++++.+|+++
T Consensus       169 -------~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  234 (293)
T d1p22a2         169 -------EFVRTLNGHKRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG  234 (293)
T ss_dssp             -------CEEEEEECCSSC--EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred             -------cEEEEEcccccc--cccccC---CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence                   677788888765  777766   4678999999999999999999999999888887765  45677899999


Q ss_pred             eCCCcEEEecCCCCC----------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          213 GIEKTVKLWAPMPTD----------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       213 ~~d~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      +.||.|++||+....          +..+.+|...+..+.+   ++.++++++.|++|++||
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~---d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred             cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE---cCCEEEEEecCCEEEEeC
Confidence            999999999965322          2345677777766653   567899999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.4e-24  Score=180.04  Aligned_cols=253  Identities=8%  Similarity=0.074  Sum_probs=184.9

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      .|.|++||+......   ..          +|...|.+++|+|++ ++|++++.+.  .|++||.++++.          
T Consensus        23 ~g~v~v~d~~~~~~~---~~----------~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~----------   78 (360)
T d1k32a3          23 RGQAFIQDVSGTYVL---KV----------PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKA----------   78 (360)
T ss_dssp             TTEEEEECTTSSBEE---EC----------SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCE----------
T ss_pred             CCeEEEEECCCCcEE---Ec----------cCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcE----------
Confidence            478999999765432   22          278899999999999 7777665443  799999998752          


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                           ..+ ..|...+.+++|+|+|++|++ +.++.+++|++.++                +....+..+...  +.+++
T Consensus        79 -----~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~  134 (360)
T d1k32a3          79 -----EKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----------------KPTVIERSREAM--ITDFT  134 (360)
T ss_dssp             -----EEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----------------CEEEEEECSSSC--CCCEE
T ss_pred             -----EEe-eCCCceEEeeeecccccccceecccccccccccccc----------------ceeeeeeccccc--ccchh
Confidence                 122 578899999999999998888 57999999999887                566777777755  89999


Q ss_pred             EecCCCcEEEEec----------cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 021160          159 FFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  228 (316)
Q Consensus       159 ~~~~~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~  228 (316)
                      | +|+|++|+.+.          .++.+++|++.+++... +..+...+..++|+|+++.|++++.|+.+++|+......
T Consensus       135 ~-spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         135 I-SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             E-CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             h-ccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence            9 99999998643          35579999999887654 445667888999999999999999999999998643210


Q ss_pred             C--------------------CCC--------------CCcccceee----------e---------ecC---CCCceeE
Q 021160          229 P--------------------PLP--------------DNAEKIMKA----------N---------KQG---REDHSRI  252 (316)
Q Consensus       229 ~--------------------~~~--------------~~~~~~~~~----------~---------~~~---~~~~~~~  252 (316)
                      .                    .+.              .....+...          .         .+.   +...+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (360)
T d1k32a3         213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ  292 (360)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH
T ss_pred             eeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEE
Confidence            0                    000              000000000          0         000   0112344


Q ss_pred             EecCCCeEEEEEecccCccee------EEeecccccccccCCCCeEEEEeccCCCCCC
Q 021160          253 TLTPDVIMHVLRLQRRQTLAY------RERRYNAADFESDEEEGETYLLGFSDSDASS  304 (316)
Q Consensus       253 s~~~d~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  304 (316)
                      +++.++.+++|++.+++...+      ..++|++..+....++|.|++|++..++++.
T Consensus       293 ~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         293 GAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             CCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             ecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            555678999999988754433      2789999999999999999999998877643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-24  Score=176.58  Aligned_cols=227  Identities=14%  Similarity=0.189  Sum_probs=161.4

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC-C-
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT-P-   78 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~-~-   78 (316)
                      .+|.|+|||+.+.++...+.           +|...|.+++|+|   .+|++|+.|+.+++|+.............. . 
T Consensus        35 ~Dg~i~vWd~~~~~~~~~~~-----------~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~  100 (342)
T d2ovrb2          35 DDNTLKVWSAVTGKCLRTLV-----------GHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTV  100 (342)
T ss_dssp             TTSCEEEEETTTCCEEEECC-----------CCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCeEEEEECCCCCEEEEEe-----------CCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeE
Confidence            37899999998876544332           4899999999987   489999999999999987654321110000 0 


Q ss_pred             ------------------ce----------------------------------------ecc-----cccccCCCcccE
Q 021160           79 ------------------VD----------------------------------------TFC-----PRHLIGKNNIHI   95 (316)
Q Consensus        79 ------------------~~----------------------------------------~~~-----~~~~~~~~~~~i   95 (316)
                                        +.                                        .+.     ......+|...+
T Consensus       101 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  180 (342)
T d2ovrb2         101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV  180 (342)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred             eeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccc
Confidence                              00                                        000     000012233333


Q ss_pred             EEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC
Q 021160           96 TGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  174 (316)
Q Consensus        96 ~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  174 (316)
                      ..  +.+++.++++ +.|+.|++||++.+                +.+..+.+|...  +.++++ +  +++|++++.|+
T Consensus       181 ~~--~~~~~~~l~s~~~dg~i~~~d~~~~----------------~~~~~~~~~~~~--v~~~~~-~--~~~l~s~s~d~  237 (342)
T d2ovrb2         181 YS--LQFDGIHVVSGSLDTSIRVWDVETG----------------NCIHTLTGHQSL--TSGMEL-K--DNILVSGNADS  237 (342)
T ss_dssp             EE--EEECSSEEEEEETTSCEEEEETTTC----------------CEEEEECCCCSC--EEEEEE-E--TTEEEEEETTS
T ss_pred             cc--ccCCCCEEEEEeCCCeEEEeecccc----------------eeeeEecccccc--eeEEec-C--CCEEEEEcCCC
Confidence            33  4446676776 47899999998877                677888888865  888776 3  57999999999


Q ss_pred             eEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-----CCCcccceeeeecC
Q 021160          175 HLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-----PDNAEKIMKANKQG  245 (316)
Q Consensus       175 ~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-----~~~~~~~~~~~~~~  245 (316)
                      .|++||+...+....+..   |...+.++.++  ++++++|+.||.|++||+++++ +..+     .+|...+..++ ++
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~-~s  314 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-AS  314 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-EC
T ss_pred             EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE-EC
Confidence            999999999888877765   45566666665  5689999999999999999876 3333     24555565555 78


Q ss_pred             CCCceeEEecCCCe----EEEEEecc
Q 021160          246 REDHSRITLTPDVI----MHVLRLQR  267 (316)
Q Consensus       246 ~~~~~~~s~~~d~~----~~~w~~~~  267 (316)
                      +++.++++++.||+    +++||+..
T Consensus       315 ~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         315 NTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            88999999998885    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-24  Score=178.10  Aligned_cols=240  Identities=8%  Similarity=-0.069  Sum_probs=171.4

Q ss_pred             CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160           31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  109 (316)
Q Consensus        31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  109 (316)
                      .+|+..|++|+|+|++ ++||+|+.||+|+|||+++....           ...... .+|..+|.+++|+|++. +|++
T Consensus         8 ~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~-----------~~~~~~-~~h~~~V~~v~f~~~~~~~l~s   74 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKN-----------VDLLQS-LRYKHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             SCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTE-----------EEEEEE-EECSSCEEEEEEEESSSEEEEE
T ss_pred             CCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcc-----------eEEEEe-cCCCCCEEEEEEeCCCCCEEEE
Confidence            3589999999999998 89999999999999999866411           011111 36889999999999764 6777


Q ss_pred             e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee--
Q 021160          110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--  186 (316)
Q Consensus       110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~--  186 (316)
                      + .|+.|++|++...                ........+... ......+ .++...+++++.++.+++||++.+..  
T Consensus        75 g~~d~~v~~w~~~~~----------------~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~  136 (342)
T d1yfqa_          75 GTVQGEILKVDLIGS----------------PSFQALTNNEAN-LGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             EETTSCEEEECSSSS----------------SSEEECBSCCCC-SCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             cccccceeeeecccc----------------cccccccccccc-ccccccc-ccccccccccccccccceeeccccccce
Confidence            4 7999999999876                344444433332 1233333 67888999999999999999875432  


Q ss_pred             --EEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC----CCCcccceeeeecCCCCceeEEecCCC
Q 021160          187 --VRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL----PDNAEKIMKANKQGREDHSRITLTPDV  258 (316)
Q Consensus       187 --~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~d~  258 (316)
                        ......+  ......+.+.+.+..+++++.|+.|++|++........    .............+.++..+++++.|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  216 (342)
T d1yfqa_         137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             EEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             eeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC
Confidence              2222222  23345567788888999999999999999987652221    122233344444566778899999999


Q ss_pred             eEEEEEecccCcc------------------------e-eEEeecccccccccCCCCeEEEEeccCCC
Q 021160          259 IMHVLRLQRRQTL------------------------A-YRERRYNAADFESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       259 ~~~~w~~~~~~~~------------------------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  301 (316)
                      .+.+|++......                        + -..+.|+...++++..+|.|.+||+..+.
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            9999987532110                        1 12678888899999999999999987654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.4e-22  Score=163.48  Aligned_cols=235  Identities=11%  Similarity=-0.036  Sum_probs=157.4

Q ss_pred             CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .+|.|+|||+........+... .       +|..+|.+++|+|++..+|++|+.|+.|++|++....            
T Consensus        31 ~Dg~v~iwd~~~~~~~~~~~~~-~-------~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~------------   90 (342)
T d1yfqa_          31 WDGSLTVYKFDIQAKNVDLLQS-L-------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP------------   90 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEE-E-------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS------------
T ss_pred             CCCeEEEEEccCCCcceEEEEe-c-------CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc------------
Confidence            3789999999887654333321 1       3788999999999775799999999999999998765            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ........+........+.++...+++ +.++.+++||++.....            .........+........+.+
T Consensus        91 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          91 --SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG------------VIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             --SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB------------CEEEEESCSSSSSSCCCEEEE
T ss_pred             --ccccccccccccccccccccccccccccccccccceeeccccccc------------eeeecccccccccceeeeeee
Confidence              222222333344445556666666666 68999999998765100            001111122222112344555


Q ss_pred             ecCCCcEEEEeccCCeEEEEeccCCeeEE---EeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCCC-------
Q 021160          160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVR---LMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-------  228 (316)
Q Consensus       160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~---~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~~-------  228 (316)
                       .+.+..+++++.|+.|++|++...+...   ....+...+.+.++.| ++..+++++.||.+.+|+......       
T Consensus       157 -~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         157 -DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             -EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             -eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence             6788899999999999999988665432   2233444556655555 566799999999999998765431       


Q ss_pred             ---------CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          229 ---------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       229 ---------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                               .....|...+..+ .+++++.++++++.||.|++||+++++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l-~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSI-EFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEE-EECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeeeeeeccCCCcccccceeE-EecCCccEEEEECCCCEEEEEECCCCcEE
Confidence                     1112233334334 48889999999999999999999877544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.4e-22  Score=160.71  Aligned_cols=150  Identities=15%  Similarity=0.255  Sum_probs=118.0

Q ss_pred             EEECCCCCcEEEEEecC-CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEE
Q 021160           40 IVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYL  117 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~d-g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~i  117 (316)
                      .++++++ ..+++++.+ +.+++|++...+              ........|...+++++|+|++.+|+++ .|+.|++
T Consensus       124 ~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  188 (287)
T d1pgua2         124 SAVSLSQ-NYVAVGLEEGNTIQVFKLSDLE--------------VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL  188 (287)
T ss_dssp             EEEEECS-SEEEEEETTTSCEEEEETTEEE--------------EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeeccC-cceeeeccccceeeeeeccccc--------------eeeeeeeccCCceeEEEeccCccccccccccccccc
Confidence            4556666 567777665 479999987554              2223335577889999999999988885 7999999


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC----------CCcEEEEeccCCeEEEEeccC-Cee
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP----------NDEYVMSGSDCGHLFIWKKKG-GKL  186 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~l~~~~~dg~v~~wd~~~-~~~  186 (316)
                      ||+.++.               .....+.+|...  |.+++| +|          ++.++++|+.|+.|++||++. ++.
T Consensus       189 ~d~~~~~---------------~~~~~~~~h~~~--v~~~~~-~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         189 YDLQSRE---------------VKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             EETTTTE---------------EEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred             eeecccc---------------cccccccccccc--cceeee-cccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence            9998761               122345677765  999998 55          456899999999999999876 567


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160          187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  223 (316)
Q Consensus       187 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~  223 (316)
                      +..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       251 ~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            77788999999999999986 5889999999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.3e-21  Score=166.35  Aligned_cols=243  Identities=10%  Similarity=0.081  Sum_probs=160.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|+|||+.+.+....+..+            ..+..++|+|+| +++++++.|+.|++||+.+++...         .
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g------------~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~---------~   98 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTG------------YAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTK---------V   98 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECC------------SSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEE---------E
T ss_pred             CCEEEEEECCCCcEEEEEeCC------------CCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeE---------E
Confidence            589999999998877666542            358899999999 899999999999999999886210         0


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCC----------CCccCCccc--------------
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGP----------SPLSLSPED--------------  135 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~----------~~~~~~~~~--------------  135 (316)
                      ... ....+|...+.+++|+|||++++. + .++.+.+||...+...          ....+....              
T Consensus        99 ~~i-~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2          99 AEI-KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEE-ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEE-eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence            011 111456677788889999996544 3 6999999998875300          000000000              


Q ss_pred             --------------cccCCC-cceeeCCcCCceeeeEEEecCCCcEEEEec-cCCeEEEEeccCCe--------------
Q 021160          136 --------------LQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK--------------  185 (316)
Q Consensus       136 --------------~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~--------------  185 (316)
                                    ...... .....++..  .+..+.| +|++++++++. .+..+.+++..+++              
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (426)
T d1hzua2         178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAP--FLADGGW-DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  254 (426)
T ss_dssp             EEEETTTTEEEEEECSSSSSCEEEEEECCS--SEEEEEE-CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred             EEecCCCCeEEEEEeccccceeeEEeccCC--ccEeeeE-CCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence                          000000 011112222  2677888 88888766654 34445555544333              


Q ss_pred             ----------------------------------------eEEEeecCccceEEEEEcCCCCeEEE-------EeCCCcE
Q 021160          186 ----------------------------------------LVRLMVGDRHVVNQLEPHPHIPMFAT-------CGIEKTV  218 (316)
Q Consensus       186 ----------------------------------------~~~~~~~~~~~v~~~~~~p~~~~l~s-------~~~d~~i  218 (316)
                                                              ....+.+|...+..++|+|++++|++       ++.|++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred             ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence                                                    33356677778899999999999984       5568899


Q ss_pred             EEecCCCCC-CCC---------CCCCcccceeeeecCCCCcee-EEe----cCCCeEEEEEecccCcc
Q 021160          219 KLWAPMPTD-FPP---------LPDNAEKIMKANKQGREDHSR-ITL----TPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       219 ~iwd~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~-~s~----~~d~~~~~w~~~~~~~~  271 (316)
                      +|||+++++ ..+         +..+...++... +++|++++ +++    +.++.|++||..+.+..
T Consensus       335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~-fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE-YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE-ECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             EEEECCCCCcCeEEeccchhcccCCCCccEEEEE-ECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            999998876 322         234445555554 88998765 443    45789999999887544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=3.7e-22  Score=165.20  Aligned_cols=190  Identities=7%  Similarity=0.050  Sum_probs=154.5

Q ss_pred             EEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC--C
Q 021160           38 NAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND--E  113 (316)
Q Consensus        38 ~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d--~  113 (316)
                      .+-.|+| +| +++|+++ +|.|++||+..+..               ..  ..|...|.+++|+|+|++|++ +.+  .
T Consensus         6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~~~~---------------~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~   66 (360)
T d1k32a3           6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYV---------------LK--VPEPLRIRYVRRGGDTKVAFIHGTREGD   66 (360)
T ss_dssp             GEEEEEECGG-GCEEEEE-TTEEEEECTTSSBE---------------EE--CSCCSCEEEEEECSSSEEEEEEEETTEE
T ss_pred             hcccccCCCC-CEEEEEE-CCeEEEEECCCCcE---------------EE--ccCCCCEEEEEECCCCCEEEEEEcCCCC
Confidence            3567999 78 8888876 48999999987752               11  257889999999999997765 433  3


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  193 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~  193 (316)
                      .|++||++++                 ..+.+..|...  +.+++| +|++++|++++.++.+++|++.+++....+..|
T Consensus        67 ~v~v~d~~~~-----------------~~~~~~~~~~~--v~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          67 FLGIYDYRTG-----------------KAEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             EEEEEETTTC-----------------CEEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEEECCCC-----------------cEEEeeCCCce--EEeeee-cccccccceeccccccccccccccceeeeeecc
Confidence            7999999886                 45566777766  999999 999999999999999999999999999899889


Q ss_pred             ccceEEEEEcCCCCeEEEEe----------CCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160          194 RHVVNQLEPHPHIPMFATCG----------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  263 (316)
Q Consensus       194 ~~~v~~~~~~p~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w  263 (316)
                      ...+.+++|+|++++|+.+.          .++.+++|++.+++...+..+........ ++++++.+++++.++.+++|
T Consensus       127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA-FDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEE-ECTTSCEEEEEESCCCCCEE
T ss_pred             cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccccccccccc-ccCCCCEEEEEeCCCceEcc
Confidence            99999999999999988543          34569999999887555554555554444 88899999999999999999


Q ss_pred             Eecc
Q 021160          264 RLQR  267 (316)
Q Consensus       264 ~~~~  267 (316)
                      +...
T Consensus       206 d~~~  209 (360)
T d1k32a3         206 DRVV  209 (360)
T ss_dssp             CSSS
T ss_pred             cccc
Confidence            8643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=6e-19  Score=142.04  Aligned_cols=250  Identities=6%  Similarity=0.012  Sum_probs=176.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|.|||+.+.+..+.+..            ...+..++|+|+|..++++++.++.|++||+.+++.            
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~------------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~------------   66 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPV------------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------------   66 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------------
T ss_pred             CCEEEEEECCCCeEEEEEEC------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce------------
Confidence            47899999998876665544            235689999999933446777899999999998872            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ...+ ..+ ..+..++|++++..++ ++ .++.+.+|+..++                +....+..+..   ..++.|
T Consensus        67 --~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~  123 (301)
T d1l0qa2          67 --IATV-PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----------------TVAGTVKTGKS---PLGLAL  123 (301)
T ss_dssp             --EEEE-ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECSSS---EEEEEE
T ss_pred             --eeee-ecc-ccccccccccccccccccccccceeeecccccc----------------eeeeecccccc---ceEEEe
Confidence              2222 222 3467899999998544 44 5888999999887                55666655432   678888


Q ss_pred             ecCCCcEEE-EeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-CcEEEecCCCCCCCCCCCCccc
Q 021160          160 FGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPLPDNAEK  237 (316)
Q Consensus       160 ~~~~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~  237 (316)
                       +|++..++ ++..++.+.+|+..+++.+..+..+ ..+..++++|++..+++++.+ +.+.+|+...............
T Consensus       124 -~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (301)
T d1l0qa2         124 -SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA  201 (301)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE
T ss_pred             -ecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCC
Confidence             89988765 5566889999999999988888755 457889999999987777655 5677777776653222222233


Q ss_pred             ceeeeecCCCCceeEEe---cCCCeEEEEEecccCcce---------eEEeecccccc-cccCCCCeEEEEeccCCC
Q 021160          238 IMKANKQGREDHSRITL---TPDVIMHVLRLQRRQTLA---------YRERRYNAADF-ESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~---~~d~~~~~w~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  301 (316)
                      ..... +.+++..++.+   ..++.+++||+.+++...         ...++|++..+ .+...+++|.+||...+.
T Consensus       202 ~~~~~-~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         202 PSGIA-VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEE-ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cceee-ccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            33444 55655554433   334789999988754322         22678888765 566778889999987764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.1e-19  Score=148.72  Aligned_cols=224  Identities=9%  Similarity=0.004  Sum_probs=156.3

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEE-EEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++.|+|||+.+.+..+.+....         +...+.+++|+|+| +++ ++++.++.|.+||+.+++......      
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~---------~~~~~~~i~~spDg-~~l~v~~~~~~~v~v~D~~t~~~~~~~~------   73 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIAD---------AGPTPMVPMVAPGG-RIAYATVNKSESLVKIDLVTGETLGRID------   73 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTT---------CTTCCCCEEECTTS-SEEEEEETTTTEEEEEETTTCCEEEEEE------
T ss_pred             CCEEEEEECCCCeEEEEEECCC---------CCCCccEEEECCCC-CEEEEEECCCCeEEEEECCCCcEEEEEe------
Confidence            5899999999887766665532         23457899999999 555 677789999999999987432211      


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe-------------cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  147 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
                         .. ....+...+..++|+|+++.++.+             .+..+.+||..++                .....+..
T Consensus        74 ---~~-~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------------~~~~~~~~  133 (337)
T d1pbyb_          74 ---LS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------------SRRKAFEA  133 (337)
T ss_dssp             ---CC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------------EEEEEEEC
T ss_pred             ---cC-CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC----------------eEEEeccc
Confidence               00 001223345578999999866553             2567888998876                55555554


Q ss_pred             CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-------------------------------------
Q 021160          148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------------------------------------  190 (316)
Q Consensus       148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------------------------------------  190 (316)
                      +. .  +..++| +|++.++++++.+  +.+||..+++....+                                     
T Consensus       134 ~~-~--~~~~~~-s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (337)
T d1pbyb_         134 PR-Q--ITMLAW-ARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             CS-S--CCCEEE-CTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             cC-C--ceEEEE-cCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeee
Confidence            33 2  778888 9999999988654  667887665543322                                     


Q ss_pred             -----------------------------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccccee
Q 021160          191 -----------------------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK  240 (316)
Q Consensus       191 -----------------------------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~  240 (316)
                                                   ..+...+..++++|++.+++.+  ++.|++||+.+++ +..+ .+...+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~~~~~~~~  284 (337)
T d1pbyb_         208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYS  284 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCE
T ss_pred             ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-cCCCCEEE
Confidence                                         1223345567778888777655  5899999999887 3333 24444545


Q ss_pred             eeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          241 ANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ++ +++++.++++++.++.|++||..+.+..
T Consensus       285 ~~-~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         285 VN-VSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EE-ECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             EE-ECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            54 8899999999999999999999887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=9.6e-18  Score=142.29  Aligned_cols=186  Identities=8%  Similarity=-0.011  Sum_probs=135.0

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|.|||..+.+....+..+            ..+..++|+|+| +++++++.|+.+++||+.+++..       .+. 
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g------------~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~-------~~~-   99 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTG------------YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPT-------TVA-   99 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECS------------SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCC-------EEE-
T ss_pred             CCEEEEEECCCCcEEEEEeCC------------CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCce-------EEE-
Confidence            589999999999887777652            258999999999 89999999999999999877521       000 


Q ss_pred             cccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC--------
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------  151 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  151 (316)
                       ... ...+|...+.+..|+|||++| +++ .++.|.+||..++                +.+..+..+...        
T Consensus       100 -~i~-~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~----------------~~~~~~~~~~~~~~~~~~~~  161 (432)
T d1qksa2         100 -EIK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL----------------EPKKIQSTRGMTYDEQEYHP  161 (432)
T ss_dssp             -EEE-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC----------------CEEEEEECCEECTTTCCEES
T ss_pred             -EEe-cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc----------------cceeeeccCCccccceeccC
Confidence             111 113456667777889999965 554 6999999999887                455444433211        


Q ss_pred             -ceeeeEEEecCCCcEE-EEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 021160          152 -QTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD  227 (316)
Q Consensus       152 -~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~  227 (316)
                       .....+.+ ++++..+ ++...++.+.+|+..+++...... .+...+..++|+|+++++++++ .++.+.++|....+
T Consensus       162 ~~~~~~v~~-s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         162 EPRVAAILA-SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             CCCEEEEEE-CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCceeEEEE-CCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence             12556777 8888765 566778999999998877554333 3445688999999999866665 55678888987654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=2.8e-18  Score=140.68  Aligned_cols=248  Identities=9%  Similarity=-0.013  Sum_probs=146.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      ++.|.|||+.+.+..+.+...          |...+.+++|+|+|..+++++..++.|.+||+.+++.....        
T Consensus        17 ~~~v~v~D~~t~~~~~t~~~~----------~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~--------   78 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSCVMP----------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA--------   78 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEECS----------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--------
T ss_pred             CCEEEEEECCCCCEEEEEEcC----------CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee--------
Confidence            478999999988766666553          44567899999999444566778999999999988743211        


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEEe-------------cCCcEEEEEcCCCCCCCCccC-------CccccccCC-
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLISY-------------NDELVYLFEKNMGLGPSPLSL-------SPEDLQKRE-  140 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~-  140 (316)
                       ........+...+..++|+|+|++++.+             .+..+.+|+..++........       ......... 
T Consensus        79 -~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          79 -NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             -ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             -cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence             1111112223345678999999866543             267789999877531110000       000000000 


Q ss_pred             ------CcceeeCCcCC--------ceeeeEEEecCCCcEE--------------------------EEeccCCeEEEEe
Q 021160          141 ------EPQVYSGHRNS--------QTVKGVNFFGPNDEYV--------------------------MSGSDCGHLFIWK  180 (316)
Q Consensus       141 ------~~~~~~~~~~~--------~~i~~~~~~~~~~~~l--------------------------~~~~~dg~v~~wd  180 (316)
                            ....+......        .....+.+ +|++..+                          +++..+..+.+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS-APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             EEEESSSEEEECTTTCCEEEEECSTTCCCTTBC-CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEEeCCcceEEEccCCCEEEEEecCCCccceEE-eccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence                  00000000000        00111122 2332221                          1122234466666


Q ss_pred             ccCCeeEEE-eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCe
Q 021160          181 KKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI  259 (316)
Q Consensus       181 ~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  259 (316)
                      ..++..... +..|...+..+.++|++..++... ++.|++||+.+++......+...+..++ +++|++++++++.|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va-~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVA-FDKKGDKLYLGGTFND  314 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEE-ECSSSSCEEEESBSSE
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEE-EcCCCCEEEEEeCCCc
Confidence            666654433 345667788889999888887766 4689999998887322222333455555 8899999999999999


Q ss_pred             EEEEEecccCcc
Q 021160          260 MHVLRLQRRQTL  271 (316)
Q Consensus       260 ~~~w~~~~~~~~  271 (316)
                      |++||+.+.+..
T Consensus       315 v~v~D~~t~~~i  326 (346)
T d1jmxb_         315 LAVFNPDTLEKV  326 (346)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECccCCEE
Confidence            999999887554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=7.1e-18  Score=143.03  Aligned_cols=224  Identities=10%  Similarity=0.040  Sum_probs=145.7

Q ss_pred             ECCCCCc-EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEE
Q 021160           42 IDPRNPN-YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE  119 (316)
Q Consensus        42 ~~~~~~~-~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd  119 (316)
                      ++.+... ++++.+.||.|++||+.+++              ....+ ..| ..+..++|+|||++++++ .|++|++||
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~--------------~~~~l-~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK--------------IVKVI-DTG-YAVHISRMSASGRYLLVIGRDARIDMID   89 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS--------------EEEEE-ECC-SSEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc--------------EEEEE-eCC-CCeeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            4444323 45777889999999999988              33333 333 358899999999988774 699999999


Q ss_pred             cCCCCCCCCccCCccccccCCCcc--eee---CCcCCceeeeEEEecCCCcEEEEe-ccCCeEEEEeccCCeeEEEee--
Q 021160          120 KNMGLGPSPLSLSPEDLQKREEPQ--VYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMV--  191 (316)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~--  191 (316)
                      +.++                +...  .+.   +|.+  .+.+++| +|+|++++++ ..++.+++||..+++++..+.  
T Consensus        90 ~~t~----------------~~~~~~~i~~~~~~~~--~~~s~~~-spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~  150 (426)
T d1hzua2          90 LWAK----------------EPTKVAEIKIGIEARS--VESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  150 (426)
T ss_dssp             TTSS----------------SCEEEEEEECCSEEEE--EEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             ccCC----------------ceeEEEEEeCCCCCcc--eEEeeee-cCCCCEEEEeecCCCeEEEEcCCccceeEEeecc
Confidence            9887                3322  222   3332  2667777 8999987554 578999999988765443221  


Q ss_pred             -----------------------------------------------------cCccceEEEEEcCCCCeEEEEe-CCCc
Q 021160          192 -----------------------------------------------------GDRHVVNQLEPHPHIPMFATCG-IEKT  217 (316)
Q Consensus       192 -----------------------------------------------------~~~~~v~~~~~~p~~~~l~s~~-~d~~  217 (316)
                                                                           .+...+..++|+|++++++++. .+..
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~  230 (426)
T d1hzua2         151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNK  230 (426)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSE
T ss_pred             CCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccc
Confidence                                                                 1223456788999998866554 4455


Q ss_pred             EEEecCCCCCC-------------------------------------------------------CCCCCCcccceeee
Q 021160          218 VKLWAPMPTDF-------------------------------------------------------PPLPDNAEKIMKAN  242 (316)
Q Consensus       218 i~iwd~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~  242 (316)
                      +.+++...++.                                                       ..+.+|...+..++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~  310 (426)
T d1hzua2         231 VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK  310 (426)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEE
T ss_pred             eeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEE
Confidence            66666553220                                                       01112333333333


Q ss_pred             ecCCCCceeEE-------ecCCCeEEEEEecccCcc------------------e-eEEeecccccc-----cccCCCCe
Q 021160          243 KQGREDHSRIT-------LTPDVIMHVLRLQRRQTL------------------A-YRERRYNAADF-----ESDEEEGE  291 (316)
Q Consensus       243 ~~~~~~~~~~s-------~~~d~~~~~w~~~~~~~~------------------~-~~~~~~~~~~~-----~~~~~~~~  291 (316)
                       +++++.+++.       ++.++++++||+.+++..                  + ..+++|++..+     ...++++.
T Consensus       311 -~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~  389 (426)
T d1hzua2         311 -THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA  389 (426)
T ss_dssp             -CCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCE
T ss_pred             -cCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCe
Confidence             6777777773       445688999998765432                  1 22688888766     23567888


Q ss_pred             EEEEeccCCC
Q 021160          292 TYLLGFSDSD  301 (316)
Q Consensus       292 v~~~~~~~~~  301 (316)
                      |.+||....+
T Consensus       390 i~v~D~~T~k  399 (426)
T d1hzua2         390 LVVVDDKTLK  399 (426)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCe
Confidence            9999877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.2e-17  Score=141.59  Aligned_cols=264  Identities=9%  Similarity=-0.040  Sum_probs=162.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      +|.|++||+.+.+...........      +|.+.+.+.+|+|+|..+++++..++.|++||..+++..........   
T Consensus        82 dg~v~~~d~~t~~~~~~~~i~~~~------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~---  152 (432)
T d1qksa2          82 DGKVNMIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM---  152 (432)
T ss_dssp             TSEEEEEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE---
T ss_pred             CCCEEEEEeeCCCceEEEEEecCC------CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc---
Confidence            689999999887765554443322      25667778889999944557888999999999998874322110000   


Q ss_pred             cccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVN  158 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~  158 (316)
                       ........+......+.++|+|..+ ++. .++.|.+||....                +...... .+.  ..+..++
T Consensus       153 -~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~----------------~~~~~~~i~~g--~~~~~~~  213 (432)
T d1qksa2         153 -TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL----------------NNLKTTEISAE--RFLHDGG  213 (432)
T ss_dssp             -CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS----------------SEEEEEEEECC--SSEEEEE
T ss_pred             -cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC----------------CcceEEEEccc--Cccccce
Confidence             0001112245567788999999854 444 5899999998775                3332222 222  2378899


Q ss_pred             EecCCCcEEEEec-cCCeEEEEeccCCeeEEEeec-----Cccc------------------------------------
Q 021160          159 FFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVG-----DRHV------------------------------------  196 (316)
Q Consensus       159 ~~~~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~-----~~~~------------------------------------  196 (316)
                      | +|+|+++++++ .+..+.++|..+++.+..+..     |...                                    
T Consensus       214 ~-spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~  292 (432)
T d1qksa2         214 L-DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN  292 (432)
T ss_dssp             E-CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             E-CCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccc
Confidence            8 99999877665 466888999888776654431     2222                                    


Q ss_pred             ---eEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc-----
Q 021160          197 ---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR-----  268 (316)
Q Consensus       197 ---v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~-----  268 (316)
                         +....++|++..+++++.+...++|......     .+........  .+++..+++++.|+.+++|++.+.     
T Consensus       293 ~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----~~~~~~~sv~--vpDg~~la~~s~d~~~k~w~~~~~~~l~~  365 (432)
T d1qksa2         293 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----PEAEISGSVA--VFDIKAMTGDGSDPEFKTLPIAEWAGITE  365 (432)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----SSHHHHTCEE--EEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred             ccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----CCCCeeeEEE--EEechhhcccccCCceEecccccccccCC
Confidence               2233333333334444444444444322211     1111111111  257788899999999999987542     


Q ss_pred             -C-cceeEEeecccccc-----cccCCCCeEEEEeccCCC
Q 021160          269 -Q-TLAYRERRYNAADF-----ESDEEEGETYLLGFSDSD  301 (316)
Q Consensus       269 -~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~  301 (316)
                       . .....+++|++..+     ..++++++|.+||....+
T Consensus       366 ~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         366 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence             2 22234899999776     334678889999877664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.76  E-value=1.8e-16  Score=127.22  Aligned_cols=219  Identities=11%  Similarity=0.064  Sum_probs=158.2

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   81 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~   81 (316)
                      .|.|++||+.+.+....+..            ...+..++|++++...++++..++.+.+|+..+++.            
T Consensus        53 ~~~i~v~d~~t~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  108 (301)
T d1l0qa2          53 SNDVSIIDTATNNVIATVPA------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV------------  108 (301)
T ss_dssp             GTEEEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE------------
T ss_pred             CCEEEEEECCCCceeeeeec------------cccccccccccccccccccccccceeeeccccccee------------
Confidence            46899999988776555443            224688999999955666777888999999988762            


Q ss_pred             cccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160           82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  159 (316)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  159 (316)
                        ...+  .+.....++.|+|++..++. + .+..+.+|+..+.                .....+..+..   +..+.+
T Consensus       109 --~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~  165 (301)
T d1l0qa2         109 --AGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----------------AVINTVSVGRS---PKGIAV  165 (301)
T ss_dssp             --EEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECCSS---EEEEEE
T ss_pred             --eeec--cccccceEEEeecCCCeeeeeeccccceeeeecccc----------------ceeeecccCCC---ceEEEe
Confidence              2222  22345788999999985544 4 5888999999887                45555554432   778888


Q ss_pred             ecCCCcEEEEecc-CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC-CCCCCCC
Q 021160          160 FGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD-FPPLPDN  234 (316)
Q Consensus       160 ~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~-~~~~~~~  234 (316)
                       ++++..+++++. .+.+.+|+....+....+..+ ..+..++|+++++.++.++   .++.|++||+.+++ ...+. .
T Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~  242 (301)
T d1l0qa2         166 -TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-V  242 (301)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-C
T ss_pred             -eccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-C
Confidence             888887777665 567788888877777766644 4567899999999866543   34689999999877 33333 2


Q ss_pred             cccceeeeecCCCCcee-EEecCCCeEEEEEecccCcc
Q 021160          235 AEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       235 ~~~~~~~~~~~~~~~~~-~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ...+..++ ++++++++ ++++.++.|++||+.+++..
T Consensus       243 ~~~~~~va-~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         243 GPDPAGIA-VTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             CSSEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEE-EeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            23344444 78888765 78889999999999887554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=5.2e-16  Score=126.41  Aligned_cols=145  Identities=8%  Similarity=0.033  Sum_probs=110.3

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccccc-CCCcccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGL  124 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~  124 (316)
                      .++++++.|++|++||+.++++.              ..+. ..+...+..++|+|||+++ +++ .++.|.+||+.++ 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~--------------~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-
T ss_pred             eEEEEEcCCCEEEEEECCCCeEE--------------EEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-
Confidence            68999999999999999988732              2221 2234456789999999965 454 6899999999988 


Q ss_pred             CCCCccCCccccccCCCcceeeCCcCC---ceeeeEEEecCCCcEEEEecc------------CCeEEEEeccCCeeEEE
Q 021160          125 GPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSD------------CGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~------------dg~v~~wd~~~~~~~~~  189 (316)
                                     +.+..+..+...   ..+..++| +|++++++++..            +..+.+||..+++....
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~v~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (337)
T d1pbyb_          67 ---------------ETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             ---------------CEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ---------------cEEEEEecCCCcccccceeeEEE-cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe
Confidence                           566666544321   12567888 999999988763            57789999999998888


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      +..+ ..+..++|+|+++++++++.  .+.+||...+
T Consensus       131 ~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~  164 (337)
T d1pbyb_         131 FEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPEAG  164 (337)
T ss_dssp             EECC-SSCCCEEECTTSSCEEEESS--SEEEEETTTT
T ss_pred             cccc-CCceEEEEcCCCCEEEEEcC--CcceeeeecC
Confidence            8754 56788999999999988864  4677887643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.6e-14  Score=114.12  Aligned_cols=254  Identities=9%  Similarity=0.062  Sum_probs=156.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEE-EEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++.|+||++........+...         .|.+.+..++|+|+| ++| +++..|+.|++|++......         .
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~---------~~~~~v~~la~spDG-~~L~v~~~~d~~i~~~~i~~~~~~---------~   73 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVV---------DVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGA---------L   73 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEE---------ECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCC---------E
T ss_pred             CCcEEEEEEcCCCCeEEEEEE---------cCCCCEeEEEEeCCC-CEEEEEECCCCeEEEEEEeCCCCc---------E
Confidence            578999999876543433321         156789999999999 666 55556899999999865411         0


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcce--eeCCcCCceeee
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKG  156 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~  156 (316)
                      .+   .....+...+..++|+|+|++|+++  .++.+.+|+....                .....  ...+...  +.+
T Consensus        74 ~~---~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~--~~~  132 (333)
T d1ri6a_          74 TF---AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG----------------LPVGVVDVVEGLDG--CHS  132 (333)
T ss_dssp             EE---EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT----------------EEEEEEEEECCCTT--BCC
T ss_pred             EE---eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc----------------cceecccccCCCcc--ceE
Confidence            00   0001223445679999999977664  4788999988765                22222  2233333  788


Q ss_pred             EEEecCCCcEEEEec-cCCeEEEEeccCCeeEEEe------ecCccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCCC
Q 021160          157 VNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLM------VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF  228 (316)
Q Consensus       157 ~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~~  228 (316)
                      +.+ +|++++++.++ .+..+.+|+..........      .........++|++++..+.... ..+...+|+......
T Consensus       133 v~~-s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         133 ANI-SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             CEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEe-eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence            888 99999887776 4667999998764332211      12334568899999998865544 556677777543321


Q ss_pred             C--------CCC---CCcccceeeeecCCCCc-eeEEecCCCeEEEEEecccCcce-------------eEEeecccccc
Q 021160          229 P--------PLP---DNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLA-------------YRERRYNAADF  283 (316)
Q Consensus       229 ~--------~~~---~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~~-------------~~~~~~~~~~~  283 (316)
                      .        ...   .......... ++++++ .++....++.+.+|++.......             ...++|++..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l  290 (333)
T d1ri6a_         212 NIECVQTLDMMPENFSDTRWAADIH-ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL  290 (333)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEE-ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEE
T ss_pred             ceeeeeeeeeeecCCCccccceeEE-EecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEE
Confidence            0        111   1111222233 456655 45566778899999886543221             12567777765


Q ss_pred             c-ccCCCCeEEEEec
Q 021160          284 E-SDEEEGETYLLGF  297 (316)
Q Consensus       284 ~-~~~~~~~v~~~~~  297 (316)
                      . .+.+++.|.+|++
T Consensus       291 ~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         291 IAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEECTTTCEEEEEEE
T ss_pred             EEEECCCCeEEEEEE
Confidence            4 3455566666644

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=4.1e-15  Score=121.43  Aligned_cols=151  Identities=7%  Similarity=0.018  Sum_probs=101.6

Q ss_pred             EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE-EEe-cCCcEEE
Q 021160           40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYL  117 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~i  117 (316)
                      ++|++++ +++++++.+++|.+||+.++++              ...+...|...+.+++|+|||+++ +++ .++.|++
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~--------------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASDTV--------------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTTEE--------------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCCCE--------------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEE
Confidence            4788988 9999999999999999999873              332223345567899999999855 555 6899999


Q ss_pred             EEcCCCCCCCCccCCccccccCCCcceeeCCcCC----ceeeeEEEecCCCcEEEEec------------cCCeEEEEec
Q 021160          118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----QTVKGVNFFGPNDEYVMSGS------------DCGHLFIWKK  181 (316)
Q Consensus       118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~~~~------------~dg~v~~wd~  181 (316)
                      ||+.++                +....+......    ..+..++| +|+|+++++++            .++.+.+|+.
T Consensus        67 ~d~~t~----------------~~~~~~~~~~~~~~~~~~~~~v~~-s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~  129 (346)
T d1jmxb_          67 IDLDTC----------------KNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  129 (346)
T ss_dssp             EETTTT----------------EEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             EeCccC----------------eeeeeecccccccccCCceEEEEE-ecCCCEEEEEecCCcceeeeeccCcceEEEEec
Confidence            999887                444444332211    12567888 89999887765            3677888888


Q ss_pred             cCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160          182 KGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  225 (316)
Q Consensus       182 ~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~  225 (316)
                      .+++....+..+  ...+..+.+++++..++++   ..+.+|++.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  172 (346)
T d1jmxb_         130 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKT  172 (346)
T ss_dssp             GGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTT
T ss_pred             ccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccC
Confidence            776654433322  2334455566666554432   3466666544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.5e-13  Score=112.70  Aligned_cols=257  Identities=11%  Similarity=0.002  Sum_probs=146.7

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE----------ecCCcEEEEeCcCCcccC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYS   71 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g----------~~dg~v~~wd~~~~~~~~   71 (316)
                      .+.|.+||..+.+....+...             ....++|+|++ ++|++.          ..|+.|++||..+++...
T Consensus        27 ~~~v~v~D~~tg~~~~~~~~g-------------~~~~~a~SpDg-~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~   92 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMIDGG-------------FLPNPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA   92 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEEEC-------------SSCEEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             cCeEEEEECCCCcEEEEEECC-------------CCCceEEcCCC-CEEEEEeCCCccccccCCCCEEEEEECCCCCEEE
Confidence            457999999888765555432             33479999999 666543          357899999999887432


Q ss_pred             CCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe---cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC
Q 021160           72 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY---NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH  148 (316)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (316)
                      .+.....        ...........++|+|+++.++..   .+..+.+|+..++                +....+..+
T Consensus        93 ~~~~~~~--------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  148 (355)
T d2bbkh_          93 DIELPDA--------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----------------AFKRMLDVP  148 (355)
T ss_dssp             EEEETTC--------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----------------EEEEEEECC
T ss_pred             EEecCCc--------ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC----------------cEeeEEecC
Confidence            2110000        000111223457899999855442   4778999999887                455555443


Q ss_pred             cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe------ecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160          149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  222 (316)
Q Consensus       149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd  222 (316)
                      ..   ...  + .......++.+.|+...++..........+      ..+...+....+.+++..++.++.++.+++|+
T Consensus       149 ~~---~~~--~-~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  222 (355)
T d2bbkh_         149 DC---YHI--F-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID  222 (355)
T ss_dssp             SE---EEE--E-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred             Cc---ceE--e-ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEe
Confidence            31   111  1 111222223333444433333222211111      12334456677888888899999999999999


Q ss_pred             CCCCCCCCCC---CCcccce---------eeeecCCCCceeEEecC----------CCeEEEEEecccCccee-------
Q 021160          223 PMPTDFPPLP---DNAEKIM---------KANKQGREDHSRITLTP----------DVIMHVLRLQRRQTLAY-------  273 (316)
Q Consensus       223 ~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~s~~~----------d~~~~~w~~~~~~~~~~-------  273 (316)
                      +..+....+.   .+.....         ....+++++..++....          ...+.+||..+++....       
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~  302 (355)
T d2bbkh_         223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI  302 (355)
T ss_dssp             CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             cCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCE
Confidence            9887633222   1111111         11123344444333221          24688999887654322       


Q ss_pred             --EEeecccc--cccccCCCCeEEEEeccCCCC
Q 021160          274 --RERRYNAA--DFESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       274 --~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~  302 (316)
                        ..++|++.  .+.+...++.|++||...++.
T Consensus       303 ~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence              25677765  345667788899999988864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=2e-12  Score=106.67  Aligned_cols=222  Identities=11%  Similarity=-0.030  Sum_probs=126.4

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCcccCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSP   72 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~~~   72 (316)
                      +.|.+||..+.+....+...             ....++|+|+| +++++++          .++.|.+||..+++....
T Consensus        47 ~~v~v~D~~tg~~~~~~~~~-------------~~~~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  112 (373)
T d2madh_          47 IQQWVLDAGSGSILGHVNGG-------------FLPNPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD  112 (373)
T ss_pred             ceEEEEECCCCCEEEEEeCC-------------CCccEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCCCcEEEE
Confidence            56889998888765554332             22369999999 7777664          457899999998874322


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                      +..+.....        .-......+.|+++++.++. .  .++.+.+|+....                +..    .+.
T Consensus       113 ~~~~~~~~~--------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----------------~~~----~~~  164 (373)
T d2madh_         113 IELPDAPRF--------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS----------------SDD----QLL  164 (373)
T ss_pred             EecCCccee--------EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC----------------eEE----EEe
Confidence            111100000        00111245788999874433 2  3677888887654                111    111


Q ss_pred             CCceeeeEEEecCCCcEE-EEeccCCeEEEEeccCCeeEEEe--------------------------------------
Q 021160          150 NSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLM--------------------------------------  190 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~~~~~~~~~~--------------------------------------  190 (316)
                      ..  ..++.+ ++++..+ ++.+.|+.+.+|+...++.....                                      
T Consensus       165 ~~--~~~~~~-s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  241 (373)
T d2madh_         165 SS--PTCYHI-HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             cc--ceeEEE-ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEc
Confidence            11  334444 4444432 34555555555554433221110                                      


Q ss_pred             -----------ecC----------ccceEEEEEcCCCCeE----------EEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160          191 -----------VGD----------RHVVNQLEPHPHIPMF----------ATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  238 (316)
Q Consensus       191 -----------~~~----------~~~v~~~~~~p~~~~l----------~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  238 (316)
                                 ..+          ......++++|++..+          ++...++.+.+||..+++ +..+. +...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~  320 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDV  320 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCe
Confidence                       000          0112234555555443          344556778899988887 33333 44445


Q ss_pred             eeeeecCCCCc--eeEEecCCCeEEEEEecccCcc
Q 021160          239 MKANKQGREDH--SRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       239 ~~~~~~~~~~~--~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ..+. +++|++  ++++.+.|+.|++||+.+++..
T Consensus       321 ~~~a-~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         321 DAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             eEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            5554 788877  4468889999999999988654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=1.4e-12  Score=106.85  Aligned_cols=231  Identities=8%  Similarity=-0.022  Sum_probs=140.4

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE--ecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG--GSDEYARVYDIRKCHWYSPISSDTPV   79 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g--~~dg~v~~wd~~~~~~~~~~~~~~~~   79 (316)
                      +|.|++||+.+.+....+........    ........++|+|++ .+++.+  +.+..+.+|+..+++....+..+...
T Consensus        77 d~~v~v~D~~t~~~~~~~~~~~~~~~----~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTADIELPDAPRF----LVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCC----CBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCccee----ecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEeeEEecCCcc
Confidence            47899999999887766655433210    112234568999999 666555  45678999999988733211110000


Q ss_pred             eecccccccCCCcccEEEEEEccCCCeEEE--ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160           80 DTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  157 (316)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (316)
                      ..+        -......+.++++++.+..  ..++.+.+++....                ..     .+..  .+...
T Consensus       152 ~~~--------~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~----------------~~-----~~~~--~~~~~  200 (355)
T d2bbkh_         152 HIF--------PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF----------------HP-----EDEF--LINHP  200 (355)
T ss_dssp             EEE--------EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC----------------SC-----TTSC--BCSCC
T ss_pred             eEe--------ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc----------------cc-----eecc--eeeec
Confidence            000        0122334566677664443  23555555554433                11     1111  14455


Q ss_pred             EEecCCCcEEEEeccCCeEEEEeccCCeeEE--EeecCc----------cceEEEEEcCCCCeEEEEeCC----------
Q 021160          158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMVGDR----------HVVNQLEPHPHIPMFATCGIE----------  215 (316)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~----------~~v~~~~~~p~~~~l~s~~~d----------  215 (316)
                      .+ .+++..++.++.++.+++|++..++...  ....+.          .....++++|++..++....+          
T Consensus       201 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         201 AY-SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             EE-ETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             cc-cCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCC
Confidence            66 6677788888999999999998775422  111111          233458889999886655433          


Q ss_pred             CcEEEecCCCCC-CCCCCCCcccceeeeecCCCCc--eeEEecCCCeEEEEEecccCcc
Q 021160          216 KTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH--SRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       216 ~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      ..|.+||..+++ +.++. +...+..++ ++++++  +++++..|+.|++||+++++..
T Consensus       280 ~~v~v~d~~t~~~~~~~~-~~~~~~~~a-~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFE-MGHEIDSIN-VSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEEEETTTCCEEEEEE-EEEEECEEE-ECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CeEEEEeCCCCcEEEEec-CCCCEEEEE-EcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            369999999887 33333 334444555 788876  4567788999999999988654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.44  E-value=1.1e-11  Score=102.03  Aligned_cols=187  Identities=7%  Similarity=-0.029  Sum_probs=116.0

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      .....++.++|++...+++.+.|+.+.+|+...++....         ........+.......+.+.+++.+++.+.++
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG---------LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG  234 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE---------EeeeccccCccceeeeEEECCCceEEEecCCc
Confidence            345678899999977778899999999999987763211         00001111222334456667777677777899


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE---------ecCCCcEEEEeccCCeEEEEeccCC
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---------FGPNDEYVMSGSDCGHLFIWKKKGG  184 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~l~~~~~dg~v~~wd~~~~  184 (316)
                      .+++|+............   ..   .................+++         ....+..++....++.+.+||..++
T Consensus       235 ~v~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         235 KILQADISAAGATNKAPI---DA---LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             eEEEEEcCCCeEEEEEee---cc---ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence            999999876520000000   00   00000000000000122232         1333445556677889999999999


Q ss_pred             eeEEEeecCccceEEEEEcCCCCe--EEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPTD-FPPLPDNAE  236 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~--l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  236 (316)
                      +.+..+. +...+..++|+|||+.  +++++.|+.|++||+.+++ +.++..+..
T Consensus       309 ~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~  362 (373)
T d2madh_         309 QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence            9888776 5567899999999984  5688899999999999988 555554433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=8.8e-12  Score=100.86  Aligned_cols=189  Identities=8%  Similarity=0.058  Sum_probs=121.6

Q ss_pred             cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCC
Q 021160           48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLG  125 (316)
Q Consensus        48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~  125 (316)
                      ..+++++.|++|++|++......            ..... ..|...+..++|+|||++|+ ++ .|+.|.+|++...  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l------------~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--   69 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGAL------------TLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--   69 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE------------EEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT--
T ss_pred             EEEEECCCCCcEEEEEEcCCCCe------------EEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--
Confidence            35677889999999999754310            11111 24567889999999999764 44 4899999999765  


Q ss_pred             CCCccCCccccccCCCcceeeCCc-CCceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEEe--ecCccceEEEE
Q 021160          126 PSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLM--VGDRHVVNQLE  201 (316)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~  201 (316)
                                    .....+..+. ....+..++| +|+|++|++++. ++.+.+|+..........  ..+...+.++.
T Consensus        70 --------------~~~~~~~~~~~~~~~p~~l~~-spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~  134 (333)
T d1ri6a_          70 --------------DGALTFAAESALPGSLTHIST-DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN  134 (333)
T ss_dssp             --------------TCCEEEEEEEECSSCCSEEEE-CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE
T ss_pred             --------------CCcEEEeeecccCCCceEEEE-cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEE
Confidence                          2222222211 1122778998 999999988874 778999998876654433  34666788899


Q ss_pred             EcCCCCeEEEEe-CCCcEEEecCCCCCCCCC-------CCCcccceeeeecCCCCce-eEEecCCCeEEEEEecc
Q 021160          202 PHPHIPMFATCG-IEKTVKLWAPMPTDFPPL-------PDNAEKIMKANKQGREDHS-RITLTPDVIMHVLRLQR  267 (316)
Q Consensus       202 ~~p~~~~l~s~~-~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~s~~~d~~~~~w~~~~  267 (316)
                      ++|++++++.++ .+..|.+|+.........       .........+. +.+++.. ..+....+...+++...
T Consensus       135 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~-~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         135 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV-FHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE-ECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             eeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEE-EeccceeEEeeccccCceEEEeecc
Confidence            999999977666 456799999765431110       01111122333 4444444 34555667777776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=3.9e-11  Score=102.23  Aligned_cols=99  Identities=12%  Similarity=0.098  Sum_probs=78.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---------cCCcEEEEeCcCCcccCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSP   72 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---------~dg~v~~wd~~~~~~~~~   72 (316)
                      +|.+.+||+.+.+...++.....      ..|...|.++.|+|++ ++|+.++         .++.+.+||+.+++..  
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~--  105 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTF------DEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--  105 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTT------TTSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--
T ss_pred             CCcEEEEECCCCCEEEEEchhhh------hhccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCccc--
Confidence            46789999999887655543333      2477889999999999 7887764         3578899999988631  


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  123 (316)
                                   .+ ..+...+..+.|+|+|+.+|...++.+++|+..++
T Consensus       106 -------------~l-~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g  142 (470)
T d2bgra1         106 -------------TE-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL  142 (470)
T ss_dssp             -------------CS-SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             -------------cc-ccCCccccccccccCcceeeEeecccceEEECCCC
Confidence                         12 56678899999999999999988999999998877

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=1.9e-11  Score=104.21  Aligned_cols=152  Identities=11%  Similarity=0.050  Sum_probs=109.6

Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec------
Q 021160           38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------  111 (316)
Q Consensus        38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------  111 (316)
                      ..+.|.+++ .++..  .++.+.+||+.+++...          +........|...|.++.|+|||+.|+...      
T Consensus        20 ~~~~W~~d~-~~~~~--~~~~~~~~~~~t~~~~~----------~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          20 YSLRWISDH-EYLYK--QENNILVFNAEYGNSSV----------FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCCEECSSS-EEEEE--SSSCEEEEETTTCCEEE----------EECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             cCCEeCCCC-EEEEE--cCCcEEEEECCCCCEEE----------EEchhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            367899988 66654  57889999999887311          111222256677899999999999777642      


Q ss_pred             ----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160          112 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  187 (316)
Q Consensus       112 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~  187 (316)
                          ++.+.+||+.++                 ....+..+...  +..+.| +|+|+.||... ++.+++|+..+++..
T Consensus        87 r~s~~~~~~l~d~~~~-----------------~~~~l~~~~~~--~~~~~~-SPDG~~ia~~~-~~~l~~~~~~~g~~~  145 (470)
T d2bgra1          87 RHSYTASYDIYDLNKR-----------------QLITEERIPNN--TQWVTW-SPVGHKLAYVW-NNDIYVKIEPNLPSY  145 (470)
T ss_dssp             SSCEEEEEEEEETTTT-----------------EECCSSCCCTT--EEEEEE-CSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             eeccCceEEEEECCCC-----------------cccccccCCcc--cccccc-ccCcceeeEee-cccceEEECCCCcee
Confidence                467899999987                 34556666655  889999 99999999864 678999999988766


Q ss_pred             EEeecC------------------ccceEEEEEcCCCCeEEEEeCCCc-EEEecC
Q 021160          188 RLMVGD------------------RHVVNQLEPHPHIPMFATCGIEKT-VKLWAP  223 (316)
Q Consensus       188 ~~~~~~------------------~~~v~~~~~~p~~~~l~s~~~d~~-i~iwd~  223 (316)
                      +....+                  .+....+.|+|||+.|+....|.. +..|.+
T Consensus       146 ~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            543221                  123455789999999998876544 555544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=1e-10  Score=97.00  Aligned_cols=229  Identities=10%  Similarity=0.005  Sum_probs=140.1

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccc-------------------cccCCCCccceEEEEECCCCCcEE-EEEecCCcEEE
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSE-------------------NSKQPMNSIRLNAIVIDPRNPNYF-AVGGSDEYARV   61 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~-------------------~~~~~gh~~~v~~~~~~~~~~~~l-~~g~~dg~v~~   61 (316)
                      +|+|+|||+.+.+..+.+.......                   ....-.|.-.+....+.|+| +++ ++...+..|.+
T Consensus        20 sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG-r~lfV~d~~~~rVav   98 (441)
T d1qnia2          20 QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG-KYLFINDKANTRVAR   98 (441)
T ss_dssp             TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE-EEEEEEETTTTEEEE
T ss_pred             CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC-CEEEEEcCCCCEEEE
Confidence            6899999998877655443321110                   00001233445566678999 666 45557889999


Q ss_pred             EeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEEecCCcE------------------EEEEcC
Q 021160           62 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELV------------------YLFEKN  121 (316)
Q Consensus        62 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i------------------~iwd~~  121 (316)
                      +|+++.+.              ...+...+......++|+|+|+  +++...+..+                  ..+|..
T Consensus        99 IDl~t~k~--------------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~  164 (441)
T d1qnia2          99 IRLDIMKT--------------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE  164 (441)
T ss_dssp             EETTTTEE--------------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred             EECCCCcE--------------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence            99999873              2222123456788999999997  4444333333                  335555


Q ss_pred             CCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC----------------------------
Q 021160          122 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----------------------------  173 (316)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------------------  173 (316)
                      +.                +....+....   ....+.+ +|+|+++++.+.+                            
T Consensus       165 t~----------------~v~~qI~v~~---~p~~v~~-spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         165 TM----------------DVAWQVIVDG---NLDNTDA-DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             TC----------------SEEEEEEESS---CCCCEEE-CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             cc----------------eeeEEEecCC---CccceEE-CCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence            44                3333333222   1567777 8888877766543                            


Q ss_pred             -------------CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCC--CCCCCCCccc
Q 021160          174 -------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTD--FPPLPDNAEK  237 (316)
Q Consensus       174 -------------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~  237 (316)
                                   +.+.+++....+.+..++.... ...+.++|+|+++ +++..+++|.+||++...  +.....+...
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence                         3344554555556666665544 5779999999985 567789999999986532  1111111111


Q ss_pred             ce---------eeeecCCCCceeEEecCCCeEEEEEec
Q 021160          238 IM---------KANKQGREDHSRITLTPDVIMHVLRLQ  266 (316)
Q Consensus       238 ~~---------~~~~~~~~~~~~~s~~~d~~~~~w~~~  266 (316)
                      +.         --..+..++..+.+..-|..|..|++.
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            11         112356677888899999999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=8.7e-11  Score=96.71  Aligned_cols=254  Identities=8%  Similarity=-0.056  Sum_probs=141.7

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCcccCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSP   72 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~~~   72 (316)
                      +.|.+||..+.+....+...           .  ...++|+|++ +.|++.+          .|+.|++||..+++....
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~-----------~--~~~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~  111 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGA-----------F--LSLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEEC-----------T--TCEEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCcEEEEEeCC-----------C--CCcceECCCC-CEEEEEcccCccccccccCCeEEEEECCCCcEeee
Confidence            34666677766655554432           1  2358999999 6666543          477899999998874322


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN  150 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (316)
                      +..+....        .........++|+|||++++.+  .++.+.+||+.++                +....+..+..
T Consensus       112 i~~p~~~~--------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~----------------~~~~~~~~~~~  167 (368)
T d1mdah_         112 IELPDAPR--------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----------------SDDQLTKSASC  167 (368)
T ss_dssp             EEETTSCS--------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----------------EEEEEEECSSC
T ss_pred             ecCCccce--------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC----------------cEeEEeeccCc
Confidence            11000000        0011122358999999866553  5899999999887                56666655442


Q ss_pred             CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160          151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  224 (316)
Q Consensus       151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~  224 (316)
                      .  .  + + +.....++..+.||.+.++++.........      ..+...+..+.+.+++..+.+.  .+.+.+++..
T Consensus       168 ~--~--~-~-~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~  239 (368)
T d1mdah_         168 F--H--I-H-PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIP  239 (368)
T ss_dssp             C--C--C-E-EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECC
T ss_pred             c--e--E-c-cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeec
Confidence            2  1  1 1 223456666777888888887654332211      2233445567777777655544  4556666665


Q ss_pred             CCCCC---CCCCCcccc---------eeeeecCCCCcee-EEecC--------CCeEEEEEecccCccee---------E
Q 021160          225 PTDFP---PLPDNAEKI---------MKANKQGREDHSR-ITLTP--------DVIMHVLRLQRRQTLAY---------R  274 (316)
Q Consensus       225 ~~~~~---~~~~~~~~~---------~~~~~~~~~~~~~-~s~~~--------d~~~~~w~~~~~~~~~~---------~  274 (316)
                      .....   .........         ......++++..+ +....        ...+.+||..+++....         .
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~  319 (368)
T d1mdah_         240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAI  319 (368)
T ss_dssp             SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEE
T ss_pred             CCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEE
Confidence            54311   111111000         0111133333333 22211        24588899887643322         2


Q ss_pred             Eeeccccc--ccccCCCCeEEEEeccCCCC
Q 021160          275 ERRYNAAD--FESDEEEGETYLLGFSDSDA  302 (316)
Q Consensus       275 ~~~~~~~~--~~~~~~~~~v~~~~~~~~~~  302 (316)
                      .++|++..  +.+...++.|++||...++.
T Consensus       320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         320 IAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            57777653  34566778899999887763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.16  E-value=1.3e-10  Score=95.66  Aligned_cols=229  Identities=6%  Similarity=-0.087  Sum_probs=127.5

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCce
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      ++.|++||..+.+....+.........    .......++|+|+| ++++++. .++.+.+||+.+++....        
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~----~g~~p~~~a~SpDG-k~l~va~~~~~~v~~~d~~~~~~~~~--------  161 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFS----VGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASDDQL--------  161 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCC----BSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEEEEE--------
T ss_pred             CCeEEEEECCCCcEeeeecCCccceec----ccCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcEeEE--------
Confidence            467999999988876666554222100    01123468999999 6666554 679999999998874321        


Q ss_pred             ecccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                            + ..+...    .+.+.+ ..++. +.|+.+.++++.........          .....+..+...  +..+.
T Consensus       162 ------~-~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--~~~~~  218 (368)
T d1mdah_         162 ------T-KSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGI----------VGAQCTGAQNCS--SQAAQ  218 (368)
T ss_dssp             ------E-ECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEE----------CCCCSCTTSCBC--SCCEE
T ss_pred             ------e-eccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeee----------eecccccccccc--eeecc
Confidence                  1 111111    112222 23333 45777777776554100000          000111122211  44555


Q ss_pred             EecCCCcEEEEeccCCeEEEEeccCCeeEEEe--ecC----------ccceEEEEEcCCCCeEEEEeCC---------Cc
Q 021160          159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM--VGD----------RHVVNQLEPHPHIPMFATCGIE---------KT  217 (316)
Q Consensus       159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~--~~~----------~~~v~~~~~~p~~~~l~s~~~d---------~~  217 (316)
                      + .+++..+.+.  .+.+++++...++.....  ..+          ......++++|++..++....+         ..
T Consensus       219 ~-~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~  295 (368)
T d1mdah_         219 A-NYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             E-TTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred             c-ccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce
Confidence            5 6676655543  455666666554433211  111          1123457889988875544222         25


Q ss_pred             EEEecCCCCC-CCCCCCCcccceeeeecCCCCc--eeEEecCCCeEEEEEecccCcc
Q 021160          218 VKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH--SRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       218 i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      |.+||..+++ +.++. ....+..+. +++|++  ++++...++.|++||..+++..
T Consensus       296 v~v~D~~t~~~~~~~~-~~~~~~~~a-~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         296 TSSVTASVGQTSGPIS-NGHDSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EEEEESSSCCEEECCE-EEEEECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             EEEEECCCCcEeEEec-CCCceeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            8899999887 44443 334444444 788875  4567788999999999888654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=1.4e-07  Score=73.16  Aligned_cols=192  Identities=9%  Similarity=0.019  Sum_probs=118.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  114 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  114 (316)
                      ....+++++++ +++++....+.+++++-.+...              ...  .........+++.++++++++. ....
T Consensus        58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~--------------~~~--~~~~~~p~~iavd~~g~i~v~d~~~~~  120 (260)
T d1rwia_          58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQT--------------VLP--FDGLNYPEGLAVDTQGAVYVADRGNNR  120 (260)
T ss_dssp             SCCCEEECTTC-CEEEEETTTEEEEECTTCSCCE--------------ECC--CCSCCSEEEEEECTTCCEEEEEGGGTE
T ss_pred             CceEEEEcCCC-CEEEeeeeeceeeeeeecccee--------------eee--eeeeeecccccccccceeEeecccccc
Confidence            34678999988 7777766666666655443321              100  1123456789999999977774 5666


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  194 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~  194 (316)
                      +..++....                 ....+. .........+++ ++++.++++...++.|..++.............-
T Consensus       121 ~~~~~~~~~-----------------~~~~~~-~~~~~~p~~i~~-~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~  181 (260)
T d1rwia_         121 VVKLAAGSK-----------------TQTVLP-FTGLNDPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI  181 (260)
T ss_dssp             EEEECTTCS-----------------SCEECC-CCSCCSCCEEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             ccccccccc-----------------eeeeee-ecccCCcceeee-cCCCCEeeeccccccccccccccceeeeeecccc
Confidence            777776543                 111111 111122678888 8899988888889999999987554333222344


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC-CcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160          195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR  264 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~  264 (316)
                      .....+++.++++++++....+.|..++........+.. .......++ ..+++.++++-..+..|+.++
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEE-ECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEE-EeCCCCEEEEECCCCEEEEEe
Confidence            567889999999988888888888888876554222211 112222333 344556666655555444443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=1.9e-07  Score=72.44  Aligned_cols=227  Identities=8%  Similarity=0.024  Sum_probs=131.3

Q ss_pred             cceEEEEECCCCCcEEEE-EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec-C
Q 021160           35 IRLNAIVIDPRNPNYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  112 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~-g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  112 (316)
                      ..-.+++++++| +++++ .+..+.+..++......              ......+ ......+++.++++++++.. .
T Consensus        14 ~~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~--------------~~~~~~~-~~~p~gvav~~~g~i~v~d~~~   77 (260)
T d1rwia_          14 LSPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGT--------------TVLPFNG-LYQPQGLAVDGAGTVYVTDFNN   77 (260)
T ss_dssp             CCEEEEEECTTC-CEEEEECSSSCEEEEEC----CE--------------EECCCCS-CCSCCCEEECTTCCEEEEETTT
T ss_pred             CCCCEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceE--------------EEeccCC-ccCceEEEEcCCCCEEEeeeee
Confidence            345799999998 65554 45667777777654321              0000011 12345788999999888854 4


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  192 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~  192 (316)
                      +.+++++....                .......+ .  ....++++ .++++++++-.....+..++............
T Consensus        78 ~~i~~~~~~~~----------------~~~~~~~~-~--~~p~~iav-d~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          78 RVVTLAAGSNN----------------QTVLPFDG-L--NYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             EEEEECTTCSC----------------CEECCCCS-C--CSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceeeeeeeccc----------------eeeeeeee-e--eecccccc-cccceeEeeccccccccccccccceeeeeeec
Confidence            44554443322                11111111 1  23788998 88998888877777788887765433222222


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC-CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160          193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .......+++.|+++++++...++.|..++........+. ........++ ..++++++++....+.+..++.......
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~  216 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTST  216 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCE
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEE
Confidence            2245678999999998888888889999998876522222 2222233333 5567788888888887777764443222


Q ss_pred             eeEEee-cccccccccCCCCeEEEEeccC
Q 021160          272 AYRERR-YNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       272 ~~~~~~-~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      ...... .....++.+ .+|.+|+.|...
T Consensus       217 ~~~~~~~~~P~~i~~d-~~g~l~vad~~~  244 (260)
T d1rwia_         217 VLPFTGLNTPLAVAVD-SDRTVYVADRGN  244 (260)
T ss_dssp             ECCCCSCCCEEEEEEC-TTCCEEEEEGGG
T ss_pred             EEccCCCCCeEEEEEe-CCCCEEEEECCC
Confidence            221111 112234434 346788887754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.97  E-value=9.1e-09  Score=85.11  Aligned_cols=223  Identities=10%  Similarity=0.047  Sum_probs=127.7

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcE------------------EEEeC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA------------------RVYDI   64 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v------------------~~wd~   64 (316)
                      +.|.++|+.+.+..+.+.+.          +...+..++|+|++...++++..+..+                  ..+|.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP----------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP----------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT----------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             CEEEEEECCCCcEeeEEecC----------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            57889999988877777654          344789999999984333333333333                  33555


Q ss_pred             cCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec-CCc--------------EEEEEcCCCC----
Q 021160           65 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DEL--------------VYLFEKNMGL----  124 (316)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~~--------------i~iwd~~~~~----  124 (316)
                      .+.+.              ..++.-  ......++++|+|++++. +. ...              |.+.+.....    
T Consensus       164 ~t~~v--------------~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         164 ETMDV--------------AWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             TTCSE--------------EEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccee--------------eEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence            54431              111111  224567889999985555 32 222              2222211000    


Q ss_pred             ------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCCee--------EEE
Q 021160          125 ------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKL--------VRL  189 (316)
Q Consensus       125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~~~--------~~~  189 (316)
                            ........+......+.+..+.....   ...+.+ +|+|++++ ++..+++|.+||+.+.+.        ...
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~v-SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN---PHGLNT-SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS---CCCEEE-CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC---ccCceE-CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence                  00001111111122233444443332   577888 99999875 567899999999864211        001


Q ss_pred             eecC---ccceEEEEEcCCCCeEEEEeCCCcEEEecCCC-------CC---------CCCCCCCcccceeeeecCCCCce
Q 021160          190 MVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-------TD---------FPPLPDNAEKIMKANKQGREDHS  250 (316)
Q Consensus       190 ~~~~---~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~  250 (316)
                      +.++   .-.....+|.+++..+.+...|..|..|++..       .+         .+...+|...++... +++++++
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t-~~pdGk~  382 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES-RDADGKW  382 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS-TTCCCCE
T ss_pred             EEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc-cCCCCcE
Confidence            1111   11345568999998888999999999999641       11         222356766665555 7889999


Q ss_pred             eEEecC
Q 021160          251 RITLTP  256 (316)
Q Consensus       251 ~~s~~~  256 (316)
                      +++++.
T Consensus       383 l~s~~k  388 (441)
T d1qnia2         383 LVVLSK  388 (441)
T ss_dssp             EEEEES
T ss_pred             EEecCc
Confidence            999943

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.86  E-value=1.5e-06  Score=69.09  Aligned_cols=198  Identities=11%  Similarity=0.039  Sum_probs=119.2

Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCC-cccEEEEEEccCCCeEEEecC---
Q 021160           37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLISYND---  112 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~d---  112 (316)
                      -..++|.+++ +.++++.....+..++.......            .......+. -...+.+++.++|++.++...   
T Consensus        73 P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~------------~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~  139 (314)
T d1pjxa_          73 PAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEE------------IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEV  139 (314)
T ss_dssp             EEEEEECSSS-SEEEEEETTTEEEEEETTSCEEE------------CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBC
T ss_pred             ceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEE------------EEeccccccccCCCcEEEECCCCCEEEecCccCc
Confidence            5689999998 66777766677888887755311            000000111 123567899999998777321   


Q ss_pred             -------------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc-----EEEEeccCC
Q 021160          113 -------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-----YVMSGSDCG  174 (316)
Q Consensus       113 -------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~~~~~dg  174 (316)
                                   +.|+.++.+.                 +.. .+......  .+.++| ++++.     +.++-+..+
T Consensus       140 ~~~~~~~~~~~~~G~v~~~~~dg-----------------~~~-~~~~~~~~--pNGi~~-~~d~d~~~~~lyv~d~~~~  198 (314)
T d1pjxa_         140 APADYTRSMQEKFGSIYCFTTDG-----------------QMI-QVDTAFQF--PNGIAV-RHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             TTSCCCBTTSSSCEEEEEECTTS-----------------CEE-EEEEEESS--EEEEEE-EECTTSCEEEEEEEETTTT
T ss_pred             ccccccceeccCCceEEEEeecC-----------------cee-EeeCCcce--eeeeEE-CCCCCcceeEEEEEeeccc
Confidence                         2333333321                 111 22222221  467888 66654     455567788


Q ss_pred             eEEEEeccCC-eeE-----EEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC-CCCCCCcccceeeeecCC
Q 021160          175 HLFIWKKKGG-KLV-----RLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       175 ~v~~wd~~~~-~~~-----~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~  246 (316)
                      .|+.|++... ...     ..+.+ +......+++.++|++.++....+.|.+||.+++.. ..+.........++ +.+
T Consensus       199 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a-fg~  277 (314)
T d1pjxa_         199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH-FKP  277 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE-ECT
T ss_pred             ceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE-EeC
Confidence            9999987643 321     12222 223456799999999888877789999999987763 23333333444455 567


Q ss_pred             CCc-eeEEecCCCeEEEEEecccC
Q 021160          247 EDH-SRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       247 ~~~-~~~s~~~d~~~~~w~~~~~~  269 (316)
                      +++ ++++.+.++.|...++....
T Consensus       278 d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         278 QTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCCEEEEEECCCCcEEEEECCCCC
Confidence            664 67888888877777766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=4.6e-06  Score=64.39  Aligned_cols=215  Identities=8%  Similarity=0.028  Sum_probs=115.0

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-ecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDE--YARVYDIRKCHWYSPISSDTPVD   80 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-~~dg--~v~~wd~~~~~~~~~~~~~~~~~   80 (316)
                      .|.|-|........+...            ...+.+.+|+|+| +.||-. ...+  .+.+.+...+.            
T Consensus        20 ~l~i~d~dG~~~~~l~~~------------~~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~------------   74 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRS------------PQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA------------   74 (269)
T ss_dssp             EEEEEETTSCSCEEEEEE------------SSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC------------
T ss_pred             EEEEEcCCCCCcEEEecC------------CCceeeeEECCCC-CEEEEEEeeccCcceeeeecccCc------------
Confidence            355666655444444332            4567899999999 666654 3333  35555555443            


Q ss_pred             ecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160           81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  158 (316)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  158 (316)
                         ...+ ..+........|+|+|+.++. . .++...++......               ...........  ......
T Consensus        75 ---~~~~-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~  133 (269)
T d2hqsa1          75 ---VRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------GQIRQVTDGRS--NNTEPT  133 (269)
T ss_dssp             ---EEEE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---------------CCEEECCCCSS--CEEEEE
T ss_pred             ---eeEE-eeeecccccceecCCCCeeeEeeecCCccceeeccccc---------------ccceeeeeccc--cccccc
Confidence               1111 345667788999999986665 3 34443333332220               11111111221  133334


Q ss_pred             EecCCCcEEEE-eccCC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC-c--EEEecCCCCCCCCCC
Q 021160          159 FFGPNDEYVMS-GSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK-T--VKLWAPMPTDFPPLP  232 (316)
Q Consensus       159 ~~~~~~~~l~~-~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-~--i~iwd~~~~~~~~~~  232 (316)
                      + ++++..++. ...++  .+.+.++..+.. ..+..+........|+|+++.++..+.++ .  +.+.+...+....+.
T Consensus       134 ~-~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  211 (269)
T d2hqsa1         134 W-FPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS  211 (269)
T ss_dssp             E-CTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred             c-ccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEee
Confidence            4 555555444 33444  466666665543 34444556677889999999977665443 3  444555555432222


Q ss_pred             CCcccceeeeecCCCCceeEEecC---CCeEEEEEeccc
Q 021160          233 DNAEKIMKANKQGREDHSRITLTP---DVIMHVLRLQRR  268 (316)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~s~~~---d~~~~~w~~~~~  268 (316)
                       ....... ..|+++++.++-.+.   ...+.++++..+
T Consensus       212 -~~~~~~~-p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         212 -STFLDET-PSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             -CSSSCEE-EEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             -cCccccc-eEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence             2222222 348888887764332   345666666544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.81  E-value=1.8e-06  Score=68.25  Aligned_cols=195  Identities=10%  Similarity=0.038  Sum_probs=126.1

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  114 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  114 (316)
                      .+..+++.|+| +++++...+++|..|+.....           ..+      ......+.+++|.++|+++++. .++.
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~~-----------~~~------~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQ-----------QIH------ATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCE-----------EEE------EECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCCCE-----------EEE------EcCCCCcceEEEcCCCCeEEEecCCce
Confidence            47789999999 899998889999888865332           111      2234578899999999988874 6788


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec--
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--  192 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--  192 (316)
                      +..++.....               .....+...........+++ .+++.++++-+.++.++.++...+.....+..  
T Consensus        91 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~n~i~~-~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~  154 (302)
T d2p4oa1          91 IPVVSLVKSD---------------GTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM  154 (302)
T ss_dssp             CEEEEEECTT---------------SCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred             EEEEEecccc---------------cceeeccccCCccccceeEE-ccCCCEEeeccccccceeeeccCCcceeEecCCc
Confidence            8888775541               12222222222234788888 89999999988999999999887764432221  


Q ss_pred             --------CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC---CcccceeeeecCCCCceeEEecCCCeEE
Q 021160          193 --------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMH  261 (316)
Q Consensus       193 --------~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~~~~  261 (316)
                              .......+.+..+ ..+++.+..+.|..++...........   ..... .-..+.+++++.++...++.|.
T Consensus       155 ~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-dgia~d~dG~l~va~~~~~~V~  232 (302)
T d2p4oa1         155 LARSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-DDFAFDVEGNLYGATHIYNSVV  232 (302)
T ss_dssp             GSCSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-SSEEEBTTCCEEEECBTTCCEE
T ss_pred             cceeeccCcccccccccccCC-ceeeecCCCCeEEeccccccccccccccccCCCCC-cceEECCCCCEEEEEcCCCcEE
Confidence                    1123456666543 345666678888888876543211110   11111 2233566788888888888777


Q ss_pred             EEEec
Q 021160          262 VLRLQ  266 (316)
Q Consensus       262 ~w~~~  266 (316)
                      .++..
T Consensus       233 ~i~p~  237 (302)
T d2p4oa1         233 RIAPD  237 (302)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            77543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.68  E-value=9.3e-06  Score=63.26  Aligned_cols=196  Identities=10%  Similarity=0.127  Sum_probs=121.7

Q ss_pred             eEEEEECCCCCcEEEE-EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160           37 LNAIVIDPRNPNYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  114 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~-g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  114 (316)
                      -..+++.++....+++ .+.++.|..++.....               ..............+++.++|.++++. ..+.
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~---------------~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~  136 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF---------------VRKFGATILQHPRGVTVDNKGRIIVVECKVMR  136 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTTSCE---------------EEEECTTTCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             cccccccccccccceeccCCccccccccccccc---------------eeecCCCcccccceeccccCCcEEEEeeccce
Confidence            3456655554244444 3455677777764321               111112234556788999999877774 5677


Q ss_pred             EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee--c
Q 021160          115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--G  192 (316)
Q Consensus       115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~  192 (316)
                      +.+++....                 .+..+...........+++ .+++..+++....+.|++|+.. ++.+..+.  +
T Consensus       137 ~~~~~~~g~-----------------~~~~~g~~~~~~~~~~i~~-d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g  197 (279)
T d1q7fa_         137 VIIFDQNGN-----------------VLHKFGCSKHLEFPNGVVV-NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG  197 (279)
T ss_dssp             EEEECTTSC-----------------EEEEEECTTTCSSEEEEEE-CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT
T ss_pred             eeEeccCCc-----------------eeecccccccccccceeee-ccceeEEeeeccccceeeeecC-Cceeeeecccc
Confidence            888876543                 4444433333234778888 8899999998999999999975 66666663  3


Q ss_pred             CccceEEEEEcCCCCeEEEEeC-CCcEEEecCCCCCCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          193 DRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       193 ~~~~v~~~~~~p~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      .......+++.|+++++++-.. ++.|.+|+.....+.++..  .......++ ..+++.++++ +.+..|++|+.+..
T Consensus       198 ~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~va-v~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         198 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA-LMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE-EETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             cccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEE-EeCCCcEEEE-eCCCeEEEEEeeee
Confidence            4456788999999998776543 4579999865432322211  111222333 4556665554 45778888876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=1.3e-05  Score=62.39  Aligned_cols=198  Identities=8%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEe--c
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY--N  111 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~--~  111 (316)
                      .....+++++++ +++++-..++.|++||.+ ++...         .+.......+....-..+++.++. ..++..  .
T Consensus        23 ~~P~gvavd~dg-~i~VaD~~n~rI~v~d~~-G~~~~---------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~   91 (279)
T d1q7fa_          23 TEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKF---------QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP   91 (279)
T ss_dssp             SCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEE---------EECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred             CCccEEEEcCCC-CEEEEECCCCEEEEEeCC-CCEEE---------EecccCCCcccccccccccccccccccceeccCC
Confidence            346899999998 788877778899999976 33211         111000001122234455655554 344442  4


Q ss_pred             CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160          112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~  191 (316)
                      ++.|..++....                 ....+.... ......++. .+++.++++....+.+.+++.. ++.+..+.
T Consensus        92 ~~~i~~~~~~g~-----------------~~~~~~~~~-~~~p~~~av-d~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g  151 (279)
T d1q7fa_          92 THQIQIYNQYGQ-----------------FVRKFGATI-LQHPRGVTV-DNKGRIIVVECKVMRVIIFDQN-GNVLHKFG  151 (279)
T ss_dssp             GCEEEEECTTSC-----------------EEEEECTTT-CSCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred             cccccccccccc-----------------ceeecCCCc-ccccceecc-ccCCcEEEEeeccceeeEeccC-Cceeeccc
Confidence            667777776442                 334443221 123678888 8899988888888889998865 66666653


Q ss_pred             --cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC--CCcccceeeeecCCCCceeEEecC-CCeEEEEE
Q 021160          192 --GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANKQGREDHSRITLTP-DVIMHVLR  264 (316)
Q Consensus       192 --~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~w~  264 (316)
                        .+......+++.++++.+++....+.|++|+.....+.++.  +.......++ ..++++++++-.. +..|.+++
T Consensus       152 ~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         152 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEEC
T ss_pred             ccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccc-cccCCeEEEEECCCCcEEEEEC
Confidence              34567788999999998888888899999998765433331  1222223333 5667777777543 45677776

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.59  E-value=2.5e-06  Score=69.44  Aligned_cols=179  Identities=10%  Similarity=0.043  Sum_probs=98.4

Q ss_pred             ceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e-cC
Q 021160           36 RLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND  112 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d  112 (316)
                      .+.++.|+|+| ++++++. ....|.+|+......         +.. ...............++|+|+++++.. . .+
T Consensus       146 h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~---------~~~-~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~  214 (365)
T d1jofa_         146 GIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGE---------VEL-VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             CEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSC---------EEE-EEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCc---------eee-ccceeecCCCCceEEEEECCCCceEEEeccCC
Confidence            46799999999 6665554 456788887653321         000 000111122456788999999996544 4 58


Q ss_pred             CcEEEEEcCCCCCCCCccCCccc-cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc------CCeEEEEeccCC-
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPED-LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGG-  184 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~~wd~~~~-  184 (316)
                      ++|.+|++............... .....................+.+ +|+|++|+++..      .+.|..|++... 
T Consensus       215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g  293 (365)
T d1jofa_         215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL-TFSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE-CTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEE-CCCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence            99999998765210000000000 000000000000011112456787 999999988743      234777776542 


Q ss_pred             eeEEEe-----ecCccceEEEEEcC-CCCeEEEE-eCCCcEEEecCCCC
Q 021160          185 KLVRLM-----VGDRHVVNQLEPHP-HIPMFATC-GIEKTVKLWAPMPT  226 (316)
Q Consensus       185 ~~~~~~-----~~~~~~v~~~~~~p-~~~~l~s~-~~d~~i~iwd~~~~  226 (316)
                      ......     .........++++| +|++|+.+ ..++.|.+|++...
T Consensus       294 ~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         294 SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            221111     11224567799998 78986555 57789999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.59  E-value=9e-06  Score=64.70  Aligned_cols=199  Identities=9%  Similarity=0.109  Sum_probs=119.8

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c---
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N---  111 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~---  111 (316)
                      .+..++|+++| +++++-...+.|..|+..+.+.              .... .........+++.++|+++++. .   
T Consensus        41 ~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~--------------~~~~-~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          41 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI--------------KRPF-VSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE--------------EEEE-ECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             CcEeCEECCCC-CEEEEECCCCEEEEEECCCCeE--------------EEEE-eCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            45689999998 7888877889999998876541              1111 1223457789999999977774 2   


Q ss_pred             -CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc------CCeEEEEeccCC
Q 021160          112 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGG  184 (316)
Q Consensus       112 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~~wd~~~~  184 (316)
                       .+.+...+....                .................+++ .++|.+.++...      .+.+..++...+
T Consensus       105 ~~~~i~~~~~~~~----------------~~~~~~~~~~~~~~~nd~~~-d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~  167 (319)
T d2dg1a1         105 STGGIFAATENGD----------------NLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSPDFR  167 (319)
T ss_dssp             SCCEEEEECTTSC----------------SCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             cceeEEEEcCCCc----------------eeeeeccCCCcccCCcceeE-EeccceeecccccccccCcceeEEEecccc
Confidence             233444444443                22222222222223678888 899987766432      234666665533


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCC-C-C--------CCCCcccceeeeecCCCCceeEE
Q 021160          185 KLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF-P-P--------LPDNAEKIMKANKQGREDHSRIT  253 (316)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~s  253 (316)
                      . +..+...-...+.++|+|+++.| ++-+..+.|..|++..... . .        ..... . ..-.....++++.++
T Consensus       168 ~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~-~-PdGl~vD~~G~l~Va  244 (319)
T d2dg1a1         168 T-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE-G-PDSCCIDSDDNLYVA  244 (319)
T ss_dssp             C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS-E-EEEEEEBTTCCEEEE
T ss_pred             e-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcc-c-eeeeeEcCCCCEEEE
Confidence            3 33333233456789999999865 5556788999998764321 0 0        00000 0 112235567888888


Q ss_pred             ecCCCeEEEEEecccCcc
Q 021160          254 LTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       254 ~~~d~~~~~w~~~~~~~~  271 (316)
                      ....+.|.+++- .++.+
T Consensus       245 ~~~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         245 MYGQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             EETTTEEEEECT-TSCEE
T ss_pred             EcCCCEEEEECC-CCcEE
Confidence            888899988884 44433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-06  Score=73.91  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=67.8

Q ss_pred             ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE---------ecCCcEEEEeCcCCcccCC
Q 021160            2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG---------GSDEYARVYDIRKCHWYSP   72 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g---------~~dg~v~~wd~~~~~~~~~   72 (316)
                      .|.|.+||+.+.+...++......        ...+....|+|++ ++++..         +..+.+.++|+.+++... 
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-  105 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIE--------SLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-  105 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTT--------TTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-
T ss_pred             CCcEEEEECCCCCEEEEEcCcccc--------ccccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceee-
Confidence            467899999888765455443322        3456788999999 666654         335788999999876211 


Q ss_pred             CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160           73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  123 (316)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  123 (316)
                            +.      ........+....|+|+|+.+|-..++.|++.+...+
T Consensus       106 ------l~------~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~  144 (465)
T d1xfda1         106 ------LD------PPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK  144 (465)
T ss_dssp             ------CC------CTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS
T ss_pred             ------cc------CccCCccccceeeeccCCceEEEEecceEEEEecCCC
Confidence                  10      0012233455678999999888878888998887665

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.8e-05  Score=60.90  Aligned_cols=177  Identities=12%  Similarity=0.068  Sum_probs=99.2

Q ss_pred             CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe-EEEe-
Q 021160           33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISY-  110 (316)
Q Consensus        33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~-  110 (316)
                      +........|+|++..++.....++...++.......             ..... ...........+++++.. ++.. 
T Consensus        81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  146 (269)
T d2hqsa1          81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-------------QIRQV-TDGRSNNTEPTWFPDSQNLAFTSD  146 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------------CEEEC-CCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             eecccccceecCCCCeeeEeeecCCccceeecccccc-------------cceee-eeccccccccccccccccceeccc
Confidence            4567788999999944444444455544444433220             01111 223344455667777763 3333 


Q ss_pred             cCCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC---eEEEEeccCCe
Q 021160          111 NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGK  185 (316)
Q Consensus       111 ~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~v~~wd~~~~~  185 (316)
                      .++.  |.+.++...                 ....+....  .......| +|++..++..+.++   .+.+.+...+.
T Consensus       147 ~~g~~~i~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~-spdg~~~~~~~~~~~~~~i~~~~~~~~~  206 (269)
T d2hqsa1         147 QAGRPQVYKVNINGG-----------------APQRITWEG--SQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGG  206 (269)
T ss_dssp             TTSSCEEEEEETTSS-----------------CCEECCCSS--SEEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ccCCceEeeeecccc-----------------cceeeeccc--cccccccc-ccccceeEEEeecCCceeeeEeeccccc
Confidence            4554  555565544                 222223233  22566777 89999888776544   34445555444


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEecCCCCCCCCCCCCcccceeeeecCC
Q 021160          186 LVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR  246 (316)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  246 (316)
                      .  .+..+........|+|||+.|+..+.   ...|+++++.++....+......+.... |+|
T Consensus       207 ~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~-WSP  267 (269)
T d2hqsa1         207 V--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA-WSP  267 (269)
T ss_dssp             E--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE-ECC
T ss_pred             c--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEE-eCC
Confidence            2  33334556678899999999775443   3468899998877555554444333333 443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.48  E-value=0.00012  Score=57.96  Aligned_cols=160  Identities=6%  Similarity=0.006  Sum_probs=96.2

Q ss_pred             ccceEEEEECCCCCcEEEEEec----CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  109 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~----dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  109 (316)
                      ......++++++| +++++...    .+.+...+.......          .. ...  ..-......+++.++|++.++
T Consensus        81 ~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~----------~~-~~~--~~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1          81 KANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQ----------DI-IED--LSTAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             SSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCE----------EE-ECS--SSSCCCEEEEEECTTSCEEEE
T ss_pred             CCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCceee----------ee-ccC--CCcccCCcceeEEeccceeec
Confidence            3457899999998 66666532    233444454444311          00 000  111234678999999998777


Q ss_pred             ecC-------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE-EEeccCCeEEEEec
Q 021160          110 YND-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK  181 (316)
Q Consensus       110 ~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~  181 (316)
                      ...       +.+..++....                 .+..+......  .+.++| +++++.| ++-+..+.|+.|++
T Consensus       147 d~~~~~~~~~g~v~~~~~dg~-----------------~~~~~~~~~~~--pnGia~-s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         147 DFRGYSTNPLGGVYYVSPDFR-----------------TVTPIIQNISV--ANGIAL-STDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             ECCCBTTBCCEEEEEECTTSC-----------------CEEEEEEEESS--EEEEEE-CTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ccccccccCcceeEEEecccc-----------------eeEEEeeccce--eeeeee-ccccceEEEecccCCceEEEEE
Confidence            422       23555544332                 23333222222  678998 9999865 55567889999997


Q ss_pred             cCC-eeEEEe-------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          182 KGG-KLVRLM-------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       182 ~~~-~~~~~~-------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      ... ......       .........+++.++|++.++....+.|.+++.....
T Consensus       207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~  260 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP  260 (319)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred             cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcE
Confidence            632 211111       1112335679999999988888888999999976543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-05  Score=67.35  Aligned_cols=141  Identities=9%  Similarity=0.058  Sum_probs=88.4

Q ss_pred             EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec--------
Q 021160           40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--------  111 (316)
Q Consensus        40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------  111 (316)
                      ..|.+++ .++. -..+|.|.+||+.+++....         +...   .-....+....|+||++.++...        
T Consensus        22 ~~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l---------~~~~---~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~   87 (465)
T d1xfda1          22 AKWISDT-EFIY-REQKGTVRLWNVETNTSTVL---------IEGK---KIESLRAIRYEISPDREYALFSYNVEPIYQH   87 (465)
T ss_dssp             CCBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEE---------ECTT---TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred             CEEeCCC-cEEE-EeCCCcEEEEECCCCCEEEE---------EcCc---cccccccceeEECCCCCeEEEEEcccceeEe
Confidence            4688877 5544 45678999999988762100         0001   11223556788999999655432        


Q ss_pred             --CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160          112 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  188 (316)
Q Consensus       112 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~  188 (316)
                        .+.+.++|+.++                .. ..+... .....+....| +|+|+.+|-.. ++.|++.+..++..++
T Consensus        88 s~~~~~~i~d~~~~----------------~~-~~l~~~~~~~~~l~~~~w-SPDG~~iafv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1          88 SYTGYYVLSKIPHG----------------DP-QSLDPPEVSNAKLQYAGW-GPKGQQLIFIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             CCCSEEEEEESSSC----------------CC-EECCCTTCCSCCCSBCCB-CSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred             eccccEEEEEccCC----------------ce-eeccCccCCccccceeee-ccCCceEEEEe-cceEEEEecCCCceEE
Confidence              356889999876                22 222211 11122555777 99999998876 6789999887776555


Q ss_pred             Eeec-Cccc-----------------eEEEEEcCCCCeEEEEe
Q 021160          189 LMVG-DRHV-----------------VNQLEPHPHIPMFATCG  213 (316)
Q Consensus       189 ~~~~-~~~~-----------------v~~~~~~p~~~~l~s~~  213 (316)
                      .... ....                 -..+-|||||++||...
T Consensus       149 lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            4431 1111                 24677999999988765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.46  E-value=1.4e-05  Score=62.91  Aligned_cols=170  Identities=11%  Similarity=0.060  Sum_probs=104.5

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  112 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  112 (316)
                      ...+.+++|+|++ +++++...++.+..++.....-        .....  ..  .........+++.++++++++. .+
T Consensus        67 ~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~--------~~~~~--~~--~~~~~~~n~i~~~~~g~~~v~~~~~  133 (302)
T d2p4oa1          67 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDG--------TVETL--LT--LPDAIFLNGITPLSDTQYLTADSYR  133 (302)
T ss_dssp             SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTS--------CEEEE--EE--CTTCSCEEEEEESSSSEEEEEETTT
T ss_pred             CCCcceEEEcCCC-CeEEEecCCceEEEEEeccccc--------ceeec--cc--cCCccccceeEEccCCCEEeecccc
Confidence            5578999999999 7888888888888888764431        01100  00  1224557889999999988874 68


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE--e
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL--M  190 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~--~  190 (316)
                      +.+..++...+...      .....  .................+.+ .. +.++++.+..+.|+.++.........  .
T Consensus       134 ~~i~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~ngi~~-~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (302)
T d2p4oa1         134 GAIWLIDVVQPSGS------IWLEH--PMLARSNSESVFPAANGLKR-FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEI  203 (302)
T ss_dssp             TEEEEEETTTTEEE------EEEEC--GGGSCSSTTCCSCSEEEEEE-ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred             ccceeeeccCCcce------eEecC--CccceeeccCcccccccccc-cC-CceeeecCCCCeEEecccccccccccccc
Confidence            88888887665100      00000  00000011111112456665 43 45666777888999888765432211  1


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160          191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~  226 (316)
                      .........+++.++|+++++...++.|..++...+
T Consensus       204 ~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         204 FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            112334567999999998888888899999988764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.45  E-value=6.9e-05  Score=59.26  Aligned_cols=231  Identities=7%  Similarity=0.076  Sum_probs=126.0

Q ss_pred             ceEEEEECCCCCcEEEEEec-------CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160           36 RLNAIVIDPRNPNYFAVGGS-------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  108 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~-------dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  108 (316)
                      ..-.++|+|+| +++++...       ++.|..||..+++..          .+..... ......-..++|.+++..++
T Consensus        19 g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~----------~~~~~~~-~~~~g~P~Gl~~~~dg~~l~   86 (314)
T d1pjxa_          19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------VICKPEV-NGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEE----------EEECCEE-TTEECCEEEEEECSSSSEEE
T ss_pred             CCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEE----------EEECCcc-ccCCCcceeEEEeCCCCEEE
Confidence            35678999999 66655322       467888888876521          0110000 11122356899999998554


Q ss_pred             E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC---ceeeeEEEecCCCcEEEEecc------------
Q 021160          109 S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSD------------  172 (316)
Q Consensus       109 s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~------------  172 (316)
                      . .....|..++.+...                 ...+......   ...+.+++ .++|.+.++-..            
T Consensus        87 vad~~~~i~~~~~~g~~-----------------~~~~~~~~~g~~~~~pndl~~-d~~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTF-----------------EEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEETTTEEEEEETTSCE-----------------EECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             EEECCCeEEEEeCCCcE-----------------EEEEeccccccccCCCcEEEE-CCCCCEEEecCccCccccccccee
Confidence            4 455678888876541                 1111111111   12567888 899988776432            


Q ss_pred             ---CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCC-----eEEEEeCCCcEEEecCCCCC-C------CCCCCCccc
Q 021160          173 ---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-----MFATCGIEKTVKLWAPMPTD-F------PPLPDNAEK  237 (316)
Q Consensus       173 ---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~l~s~~~d~~i~iwd~~~~~-~------~~~~~~~~~  237 (316)
                         .|.|+.++.. ++..... ..-...+.++|+|++.     ++++-+..+.|..|++.... +      ..+......
T Consensus       149 ~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         149 QEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence               3455555543 4433332 2233457899998764     45555677888888865332 1      111111111


Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEE-eecccccccccCCCCeEEEEecc
Q 021160          238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE-RRYNAADFESDEEEGETYLLGFS  298 (316)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~  298 (316)
                      ...-.....++++.++....+.|.+++...++...... ..+....++.+.+..++|+.+..
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            11222356678888888888999999876554433221 11222233333333346655543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=0.0001  Score=57.69  Aligned_cols=164  Identities=9%  Similarity=-0.009  Sum_probs=102.8

Q ss_pred             ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec--
Q 021160           34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--  111 (316)
Q Consensus        34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--  111 (316)
                      ...+.++++.+++ .++++ +.+ .+.++|..+++...          +.. .........++.+.+.|+|++.++..  
T Consensus        58 ~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~----------l~~-~~~~~~~~~~nd~~vd~~G~iw~~~~~~  123 (295)
T d2ghsa1          58 PFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTL----------HAE-LESDLPGNRSNDGRMHPSGALWIGTMGR  123 (295)
T ss_dssp             SSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEE----------EEC-SSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeE----------Eee-eecCCCcccceeeEECCCCCEEEEeccc
Confidence            3467899998887 56554 444 58899999886321          110 00011234578899999999777742  


Q ss_pred             ---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE-EEeccCCeEEEEeccC----
Q 021160          112 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKG----  183 (316)
Q Consensus       112 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~~wd~~~----  183 (316)
                         .+.-.+|.+..+                +......... .  ...++| +++++.+ ++-+..+.|+.+++..    
T Consensus       124 ~~~~~~g~l~~~~~g----------------~~~~~~~~~~-~--~Ng~~~-s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         124 KAETGAGSIYHVAKG----------------KVTKLFADIS-I--PNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             TCCTTCEEEEEEETT----------------EEEEEEEEES-S--EEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             cccccceeEeeecCC----------------cEEEEeeccC-C--cceeee-cCCCceEEEeecccceeeEeeecccccc
Confidence               234456666554                3333333222 2  577888 8888755 5566788999988642    


Q ss_pred             --Cee--EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160          184 --GKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  231 (316)
Q Consensus       184 --~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~  231 (316)
                        ++.  ...+.+..+....+++..+|++.++.-..+.|..||.....+..+
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY  235 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred             cccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEe
Confidence              111  122233445678899999999877766678899999876544333

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.37  E-value=6.5e-05  Score=60.79  Aligned_cols=161  Identities=11%  Similarity=0.052  Sum_probs=93.4

Q ss_pred             ccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEe
Q 021160           93 IHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  170 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  170 (316)
                      ..+.++.|+|+|++++..  ....|.+|+......             ..................++| +|+++++.+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~-------------~~~~~~~~~~~~g~gPr~i~f-~pdg~~~yv~  210 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-------------VELVGSVDAPDPGDHPRWVAM-HPTGNYLYAL  210 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-------------EEEEEEEECSSTTCCEEEEEE-CTTSSEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc-------------eeeccceeecCCCCceEEEEE-CCCCceEEEe
Confidence            347899999999966664  356788887654310             001111222211233788999 8999988655


Q ss_pred             c-cCCeEEEEeccCCeeEEE-----ee--------------cCccceEEEEEcCCCCeEEEEeC-CC-----cEEEecCC
Q 021160          171 S-DCGHLFIWKKKGGKLVRL-----MV--------------GDRHVVNQLEPHPHIPMFATCGI-EK-----TVKLWAPM  224 (316)
Q Consensus       171 ~-~dg~v~~wd~~~~~~~~~-----~~--------------~~~~~v~~~~~~p~~~~l~s~~~-d~-----~i~iwd~~  224 (316)
                      . .++.|.+|++..++....     ..              .+......+.++|++++|+++.. +.     .|..|++.
T Consensus       211 ~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            4 588999999876543211     11              01123567899999999776532 22     36666665


Q ss_pred             CCC-CC------CCCCCcccceeeeecCC-CCcee-EEecCCCeEEEEEeccc
Q 021160          225 PTD-FP------PLPDNAEKIMKANKQGR-EDHSR-ITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       225 ~~~-~~------~~~~~~~~~~~~~~~~~-~~~~~-~s~~~d~~~~~w~~~~~  268 (316)
                      ... +.      ...........++ ..+ +++++ ++...++.|.+|++...
T Consensus       291 ~~g~~~~~~~~~~~~~~G~~p~~i~-~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         291 DCGSIEKQLFLSPTPTSGGHSNAVS-PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCEEEEEEEEECSSCCTTCCCEE-ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCceeeEeEeeEEEcCCCCccEEE-ecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            422 11      0011111222233 344 56655 55567899999987655

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.22  E-value=0.0006  Score=53.13  Aligned_cols=222  Identities=10%  Similarity=-0.026  Sum_probs=133.2

Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEE
Q 021160           39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF  118 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw  118 (316)
                      +..|++.+..++.+=-..+.|.-||..+++..             ...    ....+.++++.++|.+++++.+ .+.++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-------------~~~----~~~~~~~i~~~~dg~l~va~~~-gl~~~   83 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-------------VHA----LPFMGSALAKISDSKQLIASDD-GLFLR   83 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------EEE----CSSCEEEEEEEETTEEEEEETT-EEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-------------EEE----CCCCcEEEEEecCCCEEEEEeC-ccEEe
Confidence            56788765366666567788999999887521             111    1345778999999988887654 58899


Q ss_pred             EcCCCCCCCCccCCccccccCCCcceeeCC---cCCceeeeEEEecCCCcEEEEecc----CCeEEEEeccCCeeEEEee
Q 021160          119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKLVRLMV  191 (316)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~~wd~~~~~~~~~~~  191 (316)
                      |..++                +. ..+...   .....+.++.+ .++|.+.++...    .+.-.+|.+..++....+.
T Consensus        84 d~~tg----------------~~-~~l~~~~~~~~~~~~nd~~v-d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~  145 (295)
T d2ghsa1          84 DTATG----------------VL-TLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA  145 (295)
T ss_dssp             ETTTC----------------CE-EEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE
T ss_pred             ecccc----------------ee-eEEeeeecCCCcccceeeEE-CCCCCEEEEeccccccccceeEeeecCCcEEEEee
Confidence            98876                22 222211   11123788888 899987766532    2345677777777655544


Q ss_pred             cCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCC---------CCCCCcccceeeeecCCCCceeEEecCCCeEE
Q 021160          192 GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFP---------PLPDNAEKIMKANKQGREDHSRITLTPDVIMH  261 (316)
Q Consensus       192 ~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  261 (316)
                      .. ...+.++|+|+++.+ ++-+..+.|..+++......         .+.+..... .-.....++++.++.-..+.|.
T Consensus       146 ~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p-dG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         146 DI-SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             EE-SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETTTEEE
T ss_pred             cc-CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccc-cceEEcCCCCEEeeeeCCCceE
Confidence            32 356789999999874 55566788888876533211         011111112 2233566788888877788888


Q ss_pred             EEEecccCcceeEEe-eccccccccc-CCCCeEEEEeccC
Q 021160          262 VLRLQRRQTLAYRER-RYNAADFESD-EEEGETYLLGFSD  299 (316)
Q Consensus       262 ~w~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~v~~~~~~~  299 (316)
                      .++- .++....... .+....++-+ .+-.++|+-....
T Consensus       224 ~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         224 RYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence            8874 3433333322 1223333333 3445577665544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.04  E-value=0.00064  Score=52.04  Aligned_cols=219  Identities=9%  Similarity=-0.010  Sum_probs=107.0

Q ss_pred             eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-ecCC-----cEEEEeCcCCcccCCCCCC
Q 021160            3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDE-----YARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-~~dg-----~v~~wd~~~~~~~~~~~~~   76 (316)
                      |.|.+.|+.+.+..++. .           +.+.+...+|+|+| +.||.. ..++     .|.+++..+++......  
T Consensus        21 ~dl~~~d~~~g~~~~Lt-~-----------~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~--   85 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIV-S-----------NLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNGENGEIKRITY--   85 (281)
T ss_dssp             TEEEEEETTTCCEEEEE-C-----------SSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEETTTTEEEECCC--
T ss_pred             CcEEEEECCCCCEEEEe-c-----------CCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEecCCceEEeee--
Confidence            56666688776654432 2           35567899999999 666543 3222     36677777665221100  


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCCeEEEec-------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  149 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (316)
                             ................|+|+|+.++...       ...+...+....                 .....  ..
T Consensus        86 -------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~--~~  139 (281)
T d1k32a2          86 -------FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-----------------NFVPL--NL  139 (281)
T ss_dssp             -------CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-----------------EEEEC--CS
T ss_pred             -------cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc-----------------eeEEe--cC
Confidence                   0000011223456788999999776632       112444554433                 11111  11


Q ss_pred             CCceeeeEEEecCCCcEEEEeccCC-----------eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC--C
Q 021160          150 NSQTVKGVNFFGPNDEYVMSGSDCG-----------HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--K  216 (316)
Q Consensus       150 ~~~~i~~~~~~~~~~~~l~~~~~dg-----------~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d--~  216 (316)
                      ..  .....+ ++.+..++......           ................ ..........++++.. +.....+  .
T Consensus       140 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~  214 (281)
T d1k32a2         140 GP--ATHILF-ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRI-YFITDIDGFG  214 (281)
T ss_dssp             CS--CSEEEE-ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEE-EEEECTTSSC
T ss_pred             Cc--cceeee-cCCCeEEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeecccc-ceeccccccc
Confidence            11  222322 44444444332211           1222223333322222 2333445556666532 2223233  3


Q ss_pred             cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160          217 TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  270 (316)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~  270 (316)
                      .|.++|+.++....+..+...  ....+++++..++- ..++.+.++++.+++.
T Consensus       215 ~l~~~d~~g~~~~~lt~~~~~--~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         215 QIYSTDLDGKDLRKHTSFTDY--YPRHLNTDGRRILF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             EEEEEETTSCSCEECCCCCSS--CEEEEEESSSCEEE-EETTEEEEECTTTCCE
T ss_pred             ceEEEeCCCCceEEeecCCCc--ccccCcCCCCEEEE-EeCCEEEEEECCCCCE
Confidence            577788888775555433221  12235677776553 4567778887776644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.51  E-value=0.00089  Score=51.18  Aligned_cols=94  Identities=11%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             EEccC--CCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--
Q 021160           99 AYSNT--SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--  173 (316)
Q Consensus        99 ~~~~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--  173 (316)
                      ..+|+  |+.++-..++.|.+.|+.++                 ..+.+..+...  ....+| +|||+.|+.... +  
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g-----------------~~~~Lt~~~~~--~~~p~~-SPDG~~iaf~~~~~~~   64 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSG-----------------STRKIVSNLGV--INNARF-FPDGRKIAIRVMRGSS   64 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTC-----------------CEEEEECSSSE--EEEEEE-CTTSSEEEEEEEESTT
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCC-----------------CEEEEecCCCc--ccCEEE-CCCCCEEEEEEeeCCC
Confidence            45788  98877777788999999887                 33455555543  788888 999999986532 2  


Q ss_pred             ---CeEEEEeccCCeeEEEee------cCccceEEEEEcCCCCeEEEE
Q 021160          174 ---GHLFIWKKKGGKLVRLMV------GDRHVVNQLEPHPHIPMFATC  212 (316)
Q Consensus       174 ---g~v~~wd~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~s~  212 (316)
                         ..|.+++..+++......      .........+|+|+++.|+..
T Consensus        65 ~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          65 LNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence               247788888777554321      112345678899999987754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.014  Score=44.22  Aligned_cols=199  Identities=8%  Similarity=0.001  Sum_probs=113.5

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YND  112 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d  112 (316)
                      ..+.+++|++.+..++.+-..++.|+..++....               ...+.......+..+++..-+. +..+ ...
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---------------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~  100 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQL  100 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---------------CEEEECTTCCCEEEEEEETTTTEEEEEETTT
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC---------------cEEEEEeccccccEEEEeccCCeEEEeccCC
Confidence            3577899998773455544567888888887553               1111122234578889876555 4445 467


Q ss_pred             CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-c--CCeEEEEeccCCeeEEE
Q 021160          113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-D--CGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~--dg~v~~wd~~~~~~~~~  189 (316)
                      +.|.+.+++..                .....+.....  .+..++. .|...++.... .  ...|.--++........
T Consensus       101 ~~I~~~~~dg~----------------~~~~l~~~~l~--~p~~l~v-dp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_         101 DRIEVAKMDGT----------------QRRVLFDTGLV--NPRGIVT-DPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             TEEEEEETTSC----------------SCEEEECSSCS--SEEEEEE-ETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             CEEEEEecCCc----------------eEEEEeccccc--CCcEEEE-ecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            89999998765                22222222222  3788888 66666555432 2  23355455654333333


Q ss_pred             eecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160          190 MVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  268 (316)
Q Consensus       190 ~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~  268 (316)
                      ....-.....+++.+.++.|. +-...+.|...++.......+.........++..  ++.+..+-...+.|...+..++
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            322334668899988777654 4456778888888765422211111112233322  4556666666777777776655


Q ss_pred             C
Q 021160          269 Q  269 (316)
Q Consensus       269 ~  269 (316)
                      +
T Consensus       240 ~  240 (263)
T d1npea_         240 K  240 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.34  E-value=0.013  Score=46.90  Aligned_cols=98  Identities=10%  Similarity=0.115  Sum_probs=58.4

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC-CcEEEEeCcCCcccCCCCCCCCceec
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTF   82 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d-g~v~~wd~~~~~~~~~~~~~~~~~~~   82 (316)
                      .+.+||+.+++..+.......        |.....+.++.+++ .+++.|+.+ ..+.+||..+..+...          
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~--------~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~~~w~~~----------  113 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTK--------HDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPG----------  113 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECS--------CCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEEC----------
T ss_pred             EEEEEECCCCcEeecCCCCCC--------cccceeEEEEecCC-cEEEeecCCCcceeEecCccCccccc----------
Confidence            356788877664433222211        22334466788988 788888654 6899999998765321          


Q ss_pred             ccccccCCCcccEEEEEEccCCCeEEEe-c-C-----CcEEEEEcCCCC
Q 021160           83 CPRHLIGKNNIHITGLAYSNTSELLISY-N-D-----ELVYLFEKNMGL  124 (316)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d-----~~i~iwd~~~~~  124 (316)
                        ..+ . ....-...+..++|++++.+ . +     ..+.+||..+..
T Consensus       114 --~~~-~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         114 --PDM-Q-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             --CCC-S-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             --ccc-c-ccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence              111 0 11122356677889877774 2 1     358899987653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.031  Score=42.53  Aligned_cols=190  Identities=10%  Similarity=0.084  Sum_probs=105.5

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .|+++|+.+++..+.+..            ..+|.-..|-.+.  .|+..+ +..|.-|+++...        .|++-|.
T Consensus        84 ~LQiFnletK~klks~~~------------~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s--------~P~k~fd  140 (327)
T d1utca2          84 TLQIFNIEMKSKMKAHTM------------TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES--------QPVKMFD  140 (327)
T ss_dssp             EEEEEETTTTEEEEEEEC------------SSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSC--------CCEEEEE
T ss_pred             eEEEEehhHhhhhceEEc------------CCCcEEEEecCCC--EEEEEc-CCceEEEcccCCC--------Cchhhhh
Confidence            577888877766666554            3467777886644  444443 3568889885332        3444443


Q ss_pred             cccccCCCcccEEEEEEccCCCeEEE-e---c----CCcEEEEEcCCCCC------------------CCCc--------
Q 021160           84 PRHLIGKNNIHITGLAYSNTSELLIS-Y---N----DELVYLFEKNMGLG------------------PSPL--------  129 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~------------------~~~~--------  129 (316)
                      ....+.  ...|.....+++.++++. |   .    .|.+.+|..+....                  +.+.        
T Consensus       141 R~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         141 RHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CCGGGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hccccc--CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            222211  356777777888874433 2   1    45678888876530                  0000        


Q ss_pred             -----cCCcccc---ccC-C-----CcceeeCC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160          130 -----SLSPEDL---QKR-E-----EPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  194 (316)
Q Consensus       130 -----~~~~~~~---~~~-~-----~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~  194 (316)
                           .+.+-.+   +.. .     ....+-.. ......-++.. ++.-..+..-+.-|.+++||++++.++..-+-..
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv-s~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~  297 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  297 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe-eccCCEEEEEecCcEEEEEEcccccEEEEeecCC
Confidence                 0000000   000 0     00000000 00011334444 5566788888899999999999999988766666


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEE
Q 021160          195 HVVNQLEPHPHIPMFATCGIEKTVK  219 (316)
Q Consensus       195 ~~v~~~~~~p~~~~l~s~~~d~~i~  219 (316)
                      ..|...+-+....-+++...+|.|.
T Consensus       298 ~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         298 ETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CceEEeccCCCCceEEEECCCCeEE
Confidence            6777666555555566666777654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.057  Score=41.05  Aligned_cols=120  Identities=8%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEE
Q 021160           39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF  118 (316)
Q Consensus        39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw  118 (316)
                      +.-.+|.. +.||.-+ ..++.++|+++.+.++..            .+    ..+|.-=.|-.+. .|+--.+..|+-|
T Consensus        67 sAIMhP~~-~IiALra-g~~LQiFnletK~klks~------------~~----~e~VvfWkWis~~-~L~lVT~taVYHW  127 (327)
T d1utca2          67 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAH------------TM----TDDVTFWKWISLN-TVALVTDNAVYHW  127 (327)
T ss_dssp             EEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEE------------EC----SSCCCEEEESSSS-EEEEECSSEEEEE
T ss_pred             hhhcCCCC-cEEEEec-CCeEEEEehhHhhhhceE------------Ec----CCCcEEEEecCCC-EEEEEcCCceEEE
Confidence            56678877 6777766 568999999988732111            11    2345555665443 4444457789999


Q ss_pred             EcCCCCCCCCccCCccccccCCCcceeeCCcCC--ceeeeEEEecCCCcEEEEec-------cCCeEEEEeccCCeeEEE
Q 021160          119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGS-------DCGHLFIWKKKGGKLVRL  189 (316)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~-------~dg~v~~wd~~~~~~~~~  189 (316)
                      +++...               .+.+.+.-|..-  .-|..... +++.++++..+       -.|.+.+|..+.+. -+.
T Consensus       128 ~~~g~s---------------~P~k~fdR~~~L~~~QIInY~~-d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~  190 (327)
T d1utca2         128 SMEGES---------------QPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQP  190 (327)
T ss_dssp             ESSSSC---------------CCEEEEECCGGGTTCEEEEEEE-CTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEE
T ss_pred             cccCCC---------------CchhhhhhcccccCceEEEEEE-CCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccc
Confidence            996542               344445444321  12444454 66666655432       14567788776432 334


Q ss_pred             eecCc
Q 021160          190 MVGDR  194 (316)
Q Consensus       190 ~~~~~  194 (316)
                      +.+|.
T Consensus       191 ieGha  195 (327)
T d1utca2         191 IEGHA  195 (327)
T ss_dssp             ECCSE
T ss_pred             cccee
Confidence            44443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.86  E-value=0.044  Score=43.56  Aligned_cols=160  Identities=6%  Similarity=0.006  Sum_probs=87.5

Q ss_pred             eEEEEECCCCCcEEEEEecCC-----------cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC
Q 021160           37 LNAIVIDPRNPNYFAVGGSDE-----------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE  105 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~dg-----------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  105 (316)
                      +.......++ ++++.|+.+.           .+.+||+.++++...            ......+.......++.++|+
T Consensus        22 ~~~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          22 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCSSCEEEECTTSC
T ss_pred             cEEEEEeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------------CCCCCCcccceeEEEEecCCc
Confidence            3444445566 7888877421           267899998875311            111122333344667889999


Q ss_pred             eEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC------CeEE
Q 021160          106 LLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHLF  177 (316)
Q Consensus       106 ~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~  177 (316)
                      +++.+  ....+.+||..+..                 ............-...+. .+++++++.|+..      ..+.
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~-----------------w~~~~~~~~~r~~~~~~~-~~dG~v~v~GG~~~~~~~~~~v~  150 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDS-----------------WIPGPDMQVARGYQSSAT-MSDGRVFTIGGSWSGGVFEKNGE  150 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTE-----------------EEECCCCSSCCSSCEEEE-CTTSCEEEECCCCCSSSCCCCEE
T ss_pred             EEEeecCCCcceeEecCccCc-----------------ccccccccccccccceee-ecCCceeeeccccccccccceee
Confidence            88885  34689999987751                 111111111111233444 6788988888752      3589


Q ss_pred             EEeccCCeeEEEeec---------Ccc-----ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          178 IWKKKGGKLVRLMVG---------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       178 ~wd~~~~~~~~~~~~---------~~~-----~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      +||+.+.+-...-..         +..     .-..+..-++++.++.++.+..+.+++.....
T Consensus       151 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         151 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             EEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            999887653321110         000     00112223456666666666666677765543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.068  Score=40.28  Aligned_cols=222  Identities=9%  Similarity=-0.021  Sum_probs=119.5

Q ss_pred             eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160            4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   83 (316)
Q Consensus         4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   83 (316)
                      .|+..++.+.+...++  .          ....+.+++|++.+..++.+=...+.|.-.++......      .     .
T Consensus        11 ~I~~~~l~~~~~~~~~--~----------~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~------~-----~   67 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLI--P----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----S   67 (266)
T ss_dssp             SEEEEETTSCCCEEEE--C----------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------
T ss_pred             eEEEEECCCCcceeee--C----------CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC------c-----c
Confidence            3566677655443332  1          13357799999877344444445666776666532200      0     0


Q ss_pred             cccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160           84 PRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  161 (316)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  161 (316)
                      ...+.......+..+++.+.+. +..+ ...+.|.+.++...                .....+......  ...++. .
T Consensus        68 ~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~----------------~~~~~~~~~~~~--P~~l~v-d  128 (266)
T d1ijqa1          68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----------------KRKTLFRENGSK--PRAIVV-D  128 (266)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS----------------SEEEEEECTTCC--EEEEEE-E
T ss_pred             eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc----------------eEEEEEcCCCCC--cceEEE-E
Confidence            1111122233456788877665 4444 45788999998865                333333433333  788888 5


Q ss_pred             CCCcEEEEe--ccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCCCCCC---CCCc
Q 021160          162 PNDEYVMSG--SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPL---PDNA  235 (316)
Q Consensus       162 ~~~~~l~~~--~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~~~~~~~---~~~~  235 (316)
                      |...++...  +..+.|.-.++............-.....+++.+.++.|.-+ ...+.|...++.+.....+   ....
T Consensus       129 ~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~  208 (266)
T d1ijqa1         129 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  208 (266)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred             cccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcc
Confidence            654444433  234567777776443333333333567889999877765544 5667888888876542221   1111


Q ss_pred             ccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .....++..  ++.+..+-..++.|...+..++.
T Consensus       209 ~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         209 AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             cccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence            122233322  34566666666766666655543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.075  Score=39.95  Aligned_cols=188  Identities=12%  Similarity=-0.006  Sum_probs=101.1

Q ss_pred             CcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE
Q 021160           91 NNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  168 (316)
Q Consensus        91 ~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  168 (316)
                      +...+..++|.+..+ ++.+ ..++.|+..+++..                .....+......  +.++++ ...+..|.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~----------------~~~~v~~~~~~~--p~~iAv-D~~~~~lY   94 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------------EPTTIIRQDLGS--PEGIAL-DHLGRTIF   94 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------------CCEEEECTTCCC--EEEEEE-ETTTTEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC----------------CcEEEEEecccc--ccEEEE-eccCCeEE
Confidence            344577899988776 4444 35788999888765                232333322222  788888 65555554


Q ss_pred             -EeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEe--cCCCCCCCCCC-CCcccceeeee
Q 021160          169 -SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLW--APMPTDFPPLP-DNAEKIMKANK  243 (316)
Q Consensus       169 -~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~-~~~~~~~~~~~  243 (316)
                       +-...+.|.+.++........+......+..++++|...++.-.. ..+..+|+  ++.+.....+. ........++.
T Consensus        95 ~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glai  174 (263)
T d1npea_          95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (263)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEE
Confidence             556678999999875543333333335788999999777654332 22333444  45444322221 11112223332


Q ss_pred             cCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccC
Q 021160          244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSD  299 (316)
Q Consensus       244 ~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  299 (316)
                      -..++++..+-...+.|...++..........-.+....++..  ++.+|..|...
T Consensus       175 D~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~  228 (263)
T d1npea_         175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKT  228 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTT
T ss_pred             eecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCC
Confidence            2234455566666777777777654332222111112234333  34466666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.52  E-value=0.046  Score=43.83  Aligned_cols=191  Identities=8%  Similarity=0.035  Sum_probs=104.6

Q ss_pred             EEEECC---CCCcEEEEE-ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeEEEecC
Q 021160           39 AIVIDP---RNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYND  112 (316)
Q Consensus        39 ~~~~~~---~~~~~l~~g-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d  112 (316)
                      .+++..   +| +++++. ..+..|.+.|+++.++...              +.......+..++..++.  .+++....
T Consensus        89 ~~S~TdGtyDG-rylFVNDkan~RVAvIdl~~fkt~kI--------------i~iPn~~~~HG~r~~~~p~T~YV~~~~e  153 (459)
T d1fwxa2          89 HMSFTEGKYDG-RFLFMNDKANTRVARVRCDVMKCDAI--------------LEIPNAKGIHGLRPQKWPRSNYVFCNGE  153 (459)
T ss_dssp             EEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEE--------------EECSSCCSEEEEEECCSSBCSEEEEEEC
T ss_pred             cccccCCccce-eEEEEEcCCCceEEEEECcceeeeEE--------------EecCCCCCCceeecccCCCeEEEEccCc
Confidence            455543   67 666655 4788999999998874221              111223345556655544  35554322


Q ss_pred             -------------------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160          113 -------------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  173 (316)
Q Consensus       113 -------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  173 (316)
                                         +.+..+|..+.                +....+....   ....+++ +++|+++++.+.+
T Consensus       154 ~~vP~pndg~~l~d~~~y~~~~t~ID~~tm----------------~V~~QV~V~g---~ld~~~~-s~dGK~af~TsyN  213 (459)
T d1fwxa2         154 DETPLVNDGTNMEDVANYVNVFTAVDADKW----------------EVAWQVLVSG---NLDNCDA-DYEGKWAFSTSYN  213 (459)
T ss_dssp             SCEESSCSSSSTTCGG-EEEEEEEEETTTT----------------EEEEEEEESS---CCCCEEE-CSSSSEEEEEESC
T ss_pred             cccccCCCCccccchhhcceEEEEEecCCc----------------eEEEEeeeCC---Chhcccc-CCCCCEEEEEecc
Confidence                               12455666554                3333333222   1567787 8999998887643


Q ss_pred             C---------------eEEEEec-----------------------cC---CeeEEEeecCccceEEEEEcCCCCeEE-E
Q 021160          174 G---------------HLFIWKK-----------------------KG---GKLVRLMVGDRHVVNQLEPHPHIPMFA-T  211 (316)
Q Consensus       174 g---------------~v~~wd~-----------------------~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~-s  211 (316)
                      .               .+.+++.                       +.   ...+..++.. .....+..+|||++++ +
T Consensus       214 SE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~Va  292 (459)
T d1fwxa2         214 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVA  292 (459)
T ss_dssp             TTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEE
T ss_pred             ccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEe
Confidence            2               2334442                       21   0112222222 2345688999999955 5


Q ss_pred             EeCCCcEEEecCCCCC------C-------CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160          212 CGIEKTVKLWAPMPTD------F-------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  267 (316)
Q Consensus       212 ~~~d~~i~iwd~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~  267 (316)
                      +..+.++.|+|++.-.      .       .+..-...++ -.. +...+....|.--|..+--|++..
T Consensus       293 GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL-ht~-fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         293 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL-HTA-FDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE-EEE-ECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc-ccc-cCCCceEEEEeeccceEEEEecch
Confidence            5578999999986321      0       0000011111 111 344566677777899999999853

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.99  E-value=0.27  Score=39.32  Aligned_cols=70  Identities=9%  Similarity=-0.023  Sum_probs=47.9

Q ss_pred             eeeEEEecCCCcEEEEec-cCCeEEEEeccCCe-----------eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160          154 VKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK-----------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  221 (316)
Q Consensus       154 i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw  221 (316)
                      ...+.. +|||+++++++ .+.++.++|++.-.           .+..-....-....-+|...|....|---|..|.-|
T Consensus       277 PHGV~v-SPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNM-APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEE-CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCceEE-CCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEE
Confidence            466787 99999987765 58899999986311           111111122345667898888666666789999999


Q ss_pred             cCC
Q 021160          222 APM  224 (316)
Q Consensus       222 d~~  224 (316)
                      ++.
T Consensus       356 ~~~  358 (459)
T d1fwxa2         356 NIE  358 (459)
T ss_dssp             EHH
T ss_pred             ecc
Confidence            974

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.27  E-value=0.6  Score=39.10  Aligned_cols=51  Identities=10%  Similarity=0.171  Sum_probs=35.0

Q ss_pred             CCcEEEEeccCCeEEEEeccCCeeEEEeecCccc-eEEEEEcCCCCe-EEEEe
Q 021160          163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEPHPHIPM-FATCG  213 (316)
Q Consensus       163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~-l~s~~  213 (316)
                      .+.++++|+.||.++-+|.++|+.+-.+...... -.-+.+..+|+. |+..+
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            4678888999999999999999999887643211 111445557764 44443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.10  E-value=0.085  Score=41.34  Aligned_cols=166  Identities=8%  Similarity=0.067  Sum_probs=84.7

Q ss_pred             eEEEEECCCCCcEEEEEec------------CCcEEEEeCcCCcccCCCCCCCCceecccc-cccCCCcccEEEEEE--c
Q 021160           37 LNAIVIDPRNPNYFAVGGS------------DEYARVYDIRKCHWYSPISSDTPVDTFCPR-HLIGKNNIHITGLAY--S  101 (316)
Q Consensus        37 v~~~~~~~~~~~~l~~g~~------------dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~--~  101 (316)
                      .-.++..|++ ..+++++.            .|.+.++|+.+.+..        ...+... .......-....+..  .
T Consensus        37 ~EDi~~~~dg-~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~--------~~~l~~~~~~~~~~~f~PhGi~l~~~  107 (340)
T d1v04a_          37 SEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--------VSELEIIGNTLDISSFNPHGISTFID  107 (340)
T ss_dssp             CCEEEECTTS-EEEEEECCCC--------CCCCEEEEEETTSSSCC--------EEECEEECSSSCGGGCCEEEEEEEEC
T ss_pred             cceEEECCCC-cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCc--------ceEEEecCCCCCCcceeccceeEEEc
Confidence            3468889988 55544431            488999998765411        0000000 000000011223332  4


Q ss_pred             cCCC-eEEE-e---cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----
Q 021160          102 NTSE-LLIS-Y---NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----  172 (316)
Q Consensus       102 ~~~~-~l~s-~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----  172 (316)
                      ++|+ +|+. .   ...+|-+|++.....            ....+..+.. .......++.. ..++.+++|-..    
T Consensus       108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~------------~l~~~~~v~~-~~~~~pNDv~~-~~~g~fy~Tnd~~~~~  173 (340)
T d1v04a_         108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEK------------SLLHLKTIRH-KLLPSVNDIVA-VGPEHFYATNDHYFID  173 (340)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTT------------EEEEEEEECC-TTCSSEEEEEE-EETTEEEEEESCSCCS
T ss_pred             CCCcEEEEEEeccCCCceeEEEEEeCCCC------------eEEEEeecCC-ccccCccceEE-ecCCCEEEecCccCcC
Confidence            5565 3333 1   356788888764410            0011122222 22233778887 677888877311    


Q ss_pred             -----------CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCC
Q 021160          173 -----------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPT  226 (316)
Q Consensus       173 -----------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~  226 (316)
                                 -+...+|....++.. .....-...+.++++|++++| ++-+..+.|++|++...
T Consensus       174 ~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         174 PYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             hhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence                       112333433333332 222223467899999999885 45557788999988754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.45  E-value=1.1  Score=37.42  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=20.6

Q ss_pred             CCceeEEecCCCeEEEEEecccCcc
Q 021160          247 EDHSRITLTPDVIMHVLRLQRRQTL  271 (316)
Q Consensus       247 ~~~~~~s~~~d~~~~~w~~~~~~~~  271 (316)
                      .+.+++.++.|+.++.+|.++++.+
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEE
Confidence            4567788999999999999988654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.10  E-value=1.4  Score=36.95  Aligned_cols=53  Identities=9%  Similarity=0.025  Sum_probs=37.9

Q ss_pred             CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      |.+.-||+.+|+.+-..+... +...-..+-.+.+++.++.|+.++.+|.++++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence            578889999999887765332 11111122256677788999999999999987

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.94  E-value=1.4  Score=36.96  Aligned_cols=54  Identities=7%  Similarity=-0.103  Sum_probs=36.6

Q ss_pred             CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160          173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  227 (316)
Q Consensus       173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~  227 (316)
                      .|.+.-+|+.+|+.+-...... ...+-...-.+.+++.++.|+.++-+|.++++
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            3678889999999876654221 11111112235577779999999999999987

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.04  E-value=1.8  Score=34.95  Aligned_cols=60  Identities=10%  Similarity=0.017  Sum_probs=37.7

Q ss_pred             ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC
Q 021160           36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT  103 (316)
Q Consensus        36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (316)
                      .-++|+|.|++ +++++--..|.|++++..+++..       .+..+........-......|+++|+
T Consensus        28 ~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~-------~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDN-QIWLTERATGKILRVNPESGSVK-------TVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-------EEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEe-------ecccCCccccccCCCCceeeEEeCCC
Confidence            56799999999 77776545799999988776521       11111100001122456889999996

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=1.5  Score=32.41  Aligned_cols=181  Identities=12%  Similarity=0.035  Sum_probs=98.4

Q ss_pred             CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCcc
Q 021160           57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPE  134 (316)
Q Consensus        57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~  134 (316)
                      ..|+-.++.+.+..               .+.. ....+.+++|.+..+ ++.+ ...+.|+..+++.....        
T Consensus        10 ~~I~~~~l~~~~~~---------------~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~--------   65 (266)
T d1ijqa1          10 HEVRKMTLDRSEYT---------------SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------   65 (266)
T ss_dssp             SSEEEEETTSCCCE---------------EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             CeEEEEECCCCcce---------------eeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC--------
Confidence            45888888765411               1111 234567899988776 4444 35677777776542100        


Q ss_pred             ccccCCCcce-eeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE
Q 021160          135 DLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC  212 (316)
Q Consensus       135 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~  212 (316)
                           ..... +.....  .+..+++ .+.+..|. +-...+.|.+.++........+.........++++|...+|.-.
T Consensus        66 -----~~~~~~~~~~~~--~p~glAv-D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          66 -----SSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             -------CEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             -----cceEEEEeCCCC--CcceEEE-eeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEe
Confidence                 11122 222222  2667777 55555444 44567889999998665545555555678899999966554433


Q ss_pred             e--CCCcEEEecCCCCCCCCCC-CCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160          213 G--IEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  269 (316)
Q Consensus       213 ~--~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~  269 (316)
                      .  ..+.|.-.++.......+. ........++.-...+++..+-...+.|...++....
T Consensus       138 ~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         138 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            2  3345666666655422221 1112222333222345566666777888877775543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.63  E-value=2.8  Score=32.25  Aligned_cols=179  Identities=12%  Similarity=0.133  Sum_probs=90.1

Q ss_pred             ceeeEEEEeeCCCcceE-EEec-cccccccCCCCccceEEEEECCCCCcEEEEEe---cCCcEEEEeCcCCcccCCCCCC
Q 021160            2 VLFNMLFDLRSDSATRL-FYCS-SFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSD   76 (316)
Q Consensus         2 ~g~v~vwd~~~~~~~~~-~~~~-~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---~dg~v~~wd~~~~~~~~~~~~~   76 (316)
                      .|.+.++|+.+.+.... +... .......+..|  .+ ++.-.+++..+|++..   ...+|.+|++......      
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph--Gi-~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~------  137 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH--GI-STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS------  137 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE--EE-EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE------
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceecc--ce-eEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCe------
Confidence            37888999876654322 2111 11111112112  22 1222455533455442   4567888887643310      


Q ss_pred             CCceecccccccCCCcccEEEEEEccCCCeEEEec----C------------CcEEEEEcCCCCCCCCccCCccccccCC
Q 021160           77 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----D------------ELVYLFEKNMGLGPSPLSLSPEDLQKRE  140 (316)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  140 (316)
                        +  .-..++........+.+++..++.++++-.    +            ..-.+|..+.+                 
T Consensus       138 --l--~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-----------------  196 (340)
T d1v04a_         138 --L--LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----------------  196 (340)
T ss_dssp             --E--EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-----------------
T ss_pred             --E--EEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-----------------
Confidence              0  011112122234578888888888888721    1            12344444333                 


Q ss_pred             CcceeeCCcCCceeeeEEEecCCCcEEEE-eccCCeEEEEeccCCeeEEEe--ecCccceEEEEEcCCCCeEEEEe
Q 021160          141 EPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRLM--VGDRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~s~~  213 (316)
                      ..+.....-..  .+.+++ +|++++|+. -+..+.|+.|++...+.+...  ..-....-.+.+.+.+..+..++
T Consensus       197 ~~~~~~~~l~~--pNGI~~-s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVVAEGFDF--ANGINI-SPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEEEEEESS--EEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcCCCCc--cceeEE-CCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            22222222222  788998 999887655 456888999998754322211  11234566788876443444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.54  E-value=3.3  Score=32.92  Aligned_cols=107  Identities=12%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             CCccceEEEEECCCCCcEEEEE-ec----CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160           32 MNSIRLNAIVIDPRNPNYFAVG-GS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  106 (316)
Q Consensus        32 gh~~~v~~~~~~~~~~~~l~~g-~~----dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (316)
                      ++.-.+..++++|++ +++|.+ +.    ...++++|+.+++..             ...+ .  ......++|.++++.
T Consensus       122 ~~~~~~~~~~~Spd~-~~la~s~d~~G~e~~~l~v~Dl~tg~~~-------------~~~i-~--~~~~~~~~W~~D~~~  184 (430)
T d1qfma1         122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKEL-------------PDVL-E--RVKFSCMAWTHDGKG  184 (430)
T ss_dssp             SSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEE-------------EEEE-E--EECSCCEEECTTSSE
T ss_pred             cccceecceEecCCC-CEEEEEeccccCchheeEEeccCcceec-------------cccc-c--cccccceEEcCCCCE
Confidence            344456678899999 666643 33    346999999998732             1111 1  111246889999984


Q ss_pred             EE-EecC----------------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160          107 LI-SYND----------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  169 (316)
Q Consensus       107 l~-s~~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  169 (316)
                      |. +..+                ..|..+.+.+...              .....+........+..+.. +.++++++.
T Consensus       185 ~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~--------------~d~~v~~e~d~~~~~~~~~~-s~d~~~l~i  249 (430)
T d1qfma1         185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS--------------EDILCAEFPDEPKWMGGAEL-SDDGRYVLL  249 (430)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG--------------GCEEEECCTTCTTCEEEEEE-CTTSCEEEE
T ss_pred             EEEEEeccccCcccccccccCCcceEEEEECCCCcc--------------ccccccccccCCceEEeeec-cCCcceeeE
Confidence            43 3221                2477777765410              11223333322222555666 888888765


Q ss_pred             e
Q 021160          170 G  170 (316)
Q Consensus       170 ~  170 (316)
                      .
T Consensus       250 ~  250 (430)
T d1qfma1         250 S  250 (430)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.12  E-value=1.8  Score=36.10  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             EEEEeccCCeEEEEeccCCeeEEEe
Q 021160          166 YVMSGSDCGHLFIWKKKGGKLVRLM  190 (316)
Q Consensus       166 ~l~~~~~dg~v~~wd~~~~~~~~~~  190 (316)
                      .++.+..+|.++++|..+|+++...
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~  340 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAE  340 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeeecCccceEEEEecCCCcccccc
Confidence            5677888999999999999987543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.77  E-value=5.6  Score=31.85  Aligned_cols=31  Identities=6%  Similarity=0.141  Sum_probs=26.1

Q ss_pred             ccEEEEEEccCCCeEEEec-CCcEEEEEcCCC
Q 021160           93 IHITGLAYSNTSELLISYN-DELVYLFEKNMG  123 (316)
Q Consensus        93 ~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~  123 (316)
                      ..-++|+|.|+|++|++-. .|.|++++..++
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g   58 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCC
Confidence            4567999999999999974 799999987665

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.36  E-value=5.4  Score=31.16  Aligned_cols=147  Identities=8%  Similarity=-0.010  Sum_probs=84.6

Q ss_pred             cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcc-cCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160           35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  113 (316)
Q Consensus        35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  113 (316)
                      ...+-+++++.. .++++|+.++ ++|..+..-.- ........+   +....    .-..|..++|+.+  .++...++
T Consensus        37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~---~~~~~----~ip~v~~vafs~d--~l~v~~~~  105 (381)
T d1xipa_          37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLT---FKWEK----EIPDVIFVCFHGD--QVLVSTRN  105 (381)
T ss_dssp             SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC---CSEEE----ECTTEEEEEEETT--EEEEEESS
T ss_pred             cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCc---ceecc----CCCCeEEEEeeCC--EEEEEeCC
Confidence            356778888866 5777777765 66766532110 000000011   11111    1125788999754  45555667


Q ss_pred             cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee--
Q 021160          114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--  191 (316)
Q Consensus       114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--  191 (316)
                      .+..++...-                ..........  ..+.++.+ .|  ..++....++.+.++++..++......  
T Consensus       106 ~l~~~~~~~l----------------~~~~~~~~~~--~~~~~~~~-~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v  164 (381)
T d1xipa_         106 ALYSLDLEEL----------------SEFRTVTSFE--KPVFQLKN-VN--NTLVILNSVNDLSALDLRTKSTKQLAQNV  164 (381)
T ss_dssp             EEEEEESSST----------------TCEEEEEECS--SCEEEEEE-CS--SEEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred             CEEEEEeecc----------------cccccccccc--ccccceec-CC--ceeEEEecCCCEEEEEeccCccccccCCc
Confidence            7888887653                1222222222  33777776 44  456666778999999998876433221  


Q ss_pred             ---cCccceEEEEEcCCCCeEEEEe
Q 021160          192 ---GDRHVVNQLEPHPHIPMFATCG  213 (316)
Q Consensus       192 ---~~~~~v~~~~~~p~~~~l~s~~  213 (316)
                         .-.+.+.+++|++.++.++++.
T Consensus       165 ~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         165 TSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ceEEecCCceEEEEeCCcEEEEEeC
Confidence               1235678899998888887764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=5.5  Score=29.09  Aligned_cols=105  Identities=7%  Similarity=-0.046  Sum_probs=45.9

Q ss_pred             CCcEEEEeccC-----CeEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCCCCCC
Q 021160          163 NDEYVMSGSDC-----GHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPPL  231 (316)
Q Consensus       163 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~~~~~  231 (316)
                      .+..++.|+.+     ..+..||..+.+....-... .....+++.. .+++++.++.+     .....+|..+.+...+
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecc
Confidence            34555555542     34778887766533221111 1111122222 34555555544     2456677766552222


Q ss_pred             CCCcccceeeeecCCCCceeEEecCC-----CeEEEEEeccc
Q 021160          232 PDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  268 (316)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~~~~w~~~~~  268 (316)
                      .....+.........++++++.++.+     ..+.++|+.+.
T Consensus       227 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         227 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             cCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence            21111111111112245666665543     23556665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.41  E-value=2.6  Score=35.15  Aligned_cols=47  Identities=15%  Similarity=0.092  Sum_probs=33.6

Q ss_pred             CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccce-EEEEEcCCCCe
Q 021160          162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-NQLEPHPHIPM  208 (316)
Q Consensus       162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v-~~~~~~p~~~~  208 (316)
                      ..+.++++|+.||.++.+|.++|+.+-.+....... .-+.|..+|++
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            367788899999999999999999998876432111 11445557764